Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066900.t1 | XP_013445298.1 | 95.9 | 387 | 12 | 2 | 1 | 387 | 1 | 383 | 1.30E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066900.t1 | Q7VG78 | 39.9 | 208 | 117 | 3 | 177 | 376 | 761 | 968 | 2.4e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066900.t1 | A0A072TP99 | 95.9 | 387 | 12 | 2 | 1 | 387 | 1 | 383 | 9.7e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052564 | MS.gene066900 | 0.822615 | 2.15E-53 | -1.69E-46 |
| MS.gene052565 | MS.gene066900 | 0.826356 | 2.84E-54 | -1.69E-46 |
| MS.gene054473 | MS.gene066900 | 0.817684 | 2.90E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066900.t1 | MTR_8g447000 | 95.607 | 387 | 13 | 2 | 1 | 387 | 1 | 383 | 0.0 | 752 |
| MS.gene066900.t1 | MTR_2g063510 | 74.623 | 398 | 81 | 6 | 1 | 387 | 1 | 389 | 0.0 | 558 |
| MS.gene066900.t1 | MTR_8g447000 | 94.371 | 302 | 13 | 2 | 1 | 302 | 1 | 298 | 0.0 | 529 |
| MS.gene066900.t1 | MTR_2g063510 | 70.186 | 322 | 74 | 7 | 1 | 309 | 1 | 313 | 8.58e-138 | 395 |
| MS.gene066900.t1 | MTR_4g130880 | 51.064 | 188 | 90 | 1 | 198 | 383 | 147 | 334 | 1.01e-68 | 221 |
| MS.gene066900.t1 | MTR_4g007070 | 49.215 | 191 | 95 | 1 | 196 | 384 | 134 | 324 | 5.86e-68 | 219 |
| MS.gene066900.t1 | MTR_0009s0230 | 46.354 | 192 | 101 | 1 | 197 | 386 | 110 | 301 | 4.26e-66 | 212 |
| MS.gene066900.t1 | MTR_3g111690 | 47.418 | 213 | 108 | 3 | 175 | 384 | 105 | 316 | 2.28e-65 | 211 |
| MS.gene066900.t1 | MTR_0009s0230 | 45.833 | 192 | 101 | 2 | 197 | 386 | 110 | 300 | 2.38e-63 | 205 |
| MS.gene066900.t1 | MTR_8g066040 | 43.541 | 209 | 99 | 3 | 197 | 386 | 114 | 322 | 5.33e-61 | 200 |
| MS.gene066900.t1 | MTR_4g130880 | 44.860 | 107 | 57 | 1 | 198 | 302 | 147 | 253 | 1.30e-26 | 107 |
| MS.gene066900.t1 | MTR_6g052980 | 66.667 | 45 | 15 | 0 | 256 | 300 | 43 | 87 | 7.77e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066900.t1 | AT3G12710 | 68.727 | 275 | 69 | 4 | 114 | 386 | 50 | 309 | 3.66e-133 | 384 |
| MS.gene066900.t1 | AT5G44680 | 51.671 | 389 | 149 | 6 | 1 | 387 | 1 | 352 | 1.22e-131 | 381 |
| MS.gene066900.t1 | AT1G75090 | 51.596 | 188 | 89 | 1 | 199 | 384 | 119 | 306 | 2.80e-72 | 229 |
| MS.gene066900.t1 | AT1G80850 | 54.839 | 186 | 82 | 1 | 199 | 382 | 134 | 319 | 1.83e-71 | 227 |
| MS.gene066900.t1 | AT5G57970 | 52.356 | 191 | 89 | 1 | 196 | 384 | 151 | 341 | 3.26e-71 | 227 |
| MS.gene066900.t1 | AT5G57970 | 52.356 | 191 | 89 | 1 | 196 | 384 | 151 | 341 | 3.26e-71 | 227 |
| MS.gene066900.t1 | AT1G13635 | 48.980 | 196 | 98 | 1 | 193 | 386 | 109 | 304 | 8.16e-70 | 222 |
| MS.gene066900.t1 | AT1G13635 | 48.980 | 196 | 98 | 1 | 193 | 386 | 109 | 304 | 8.16e-70 | 222 |
| MS.gene066900.t1 | AT1G15970 | 50.785 | 191 | 86 | 2 | 199 | 384 | 145 | 332 | 7.12e-68 | 218 |
| MS.gene066900.t1 | AT1G15970 | 50.785 | 191 | 86 | 2 | 199 | 384 | 145 | 332 | 7.12e-68 | 218 |
Find 73 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAGGTCTTCCATTGATTT+TGG | 0.179487 | 8.4:-54684061 | None:intergenic |
| TGAAGAAACGTCAGAATTTC+AGG | 0.191617 | 8.4:+54685441 | MS.gene066900:CDS |
| CTCTTTGTTGCTGGTGGTCT+TGG | 0.216304 | 8.4:-54684231 | None:intergenic |
| GAAATCTTTGTTAAATTTCT+TGG | 0.238097 | 8.4:-54684303 | None:intergenic |
| TTGTCTATTAGTTTGGAATA+TGG | 0.244808 | 8.4:+54685805 | MS.gene066900:CDS |
| ACAAATGTTGTCTATTAGTT+TGG | 0.247258 | 8.4:+54685798 | MS.gene066900:CDS |
| GACTTTAACTTTGGTGAAAT+TGG | 0.248820 | 8.4:-54684207 | None:intergenic |
| CTCTCTGAATTACCTGAATT+AGG | 0.255887 | 8.4:-54684609 | None:intergenic |
| TTCTATGCCTACTTTGGTCT+TGG | 0.263306 | 8.4:-54684004 | None:intergenic |
| GAATTTCTTCTTTCAAGATT+TGG | 0.263831 | 8.4:-54684108 | None:intergenic |
| GATGGTAGTGAAAGTGATTT+TGG | 0.282834 | 8.4:-54684147 | None:intergenic |
| ATGTCTTCACTGGAATCTTA+TGG | 0.298466 | 8.4:-54686636 | None:intergenic |
| AAAATGAAGATTGCTCATTA+TGG | 0.312266 | 8.4:+54684474 | MS.gene066900:CDS |
| AACTTGTATTGTGTGGAAAT+AGG | 0.315120 | 8.4:-54686610 | None:intergenic |
| TCATTGACTCTCTTTGTTGC+TGG | 0.326408 | 8.4:-54684240 | None:intergenic |
| ACATGATCAGAAGAGGCTTT+AGG | 0.331121 | 8.4:+54686683 | MS.gene066900:CDS |
| GGTCTTGGTGACTTTAACTT+TGG | 0.357782 | 8.4:-54684216 | None:intergenic |
| ATTTCCACACAATACAAGTT+TGG | 0.362445 | 8.4:+54686613 | MS.gene066900:CDS |
| GTTCATTTGATAAATACATA+TGG | 0.363388 | 8.4:+54686569 | MS.gene066900:CDS |
| AGAATTTAATGCAGCAACTT+TGG | 0.368329 | 8.4:+54685759 | MS.gene066900:CDS |
| TTCTCATCAGCATGACAATA+AGG | 0.369609 | 8.4:-54686797 | None:intergenic |
| ATCATGATAAGCAATATAGA+TGG | 0.377489 | 8.4:-54685212 | None:intergenic |
| AGAAGAGGCTTTAGGTTTGT+AGG | 0.383881 | 8.4:+54686691 | MS.gene066900:CDS |
| TGCTTATCATGATGAGGAAT+GGG | 0.384161 | 8.4:+54685222 | MS.gene066900:CDS |
| TTACAAGTTGGTTGAAGAAC+AGG | 0.385259 | 8.4:-54684078 | None:intergenic |
| TGGTGGTGTTGATGAAGTTT+TGG | 0.386677 | 8.4:-54684187 | None:intergenic |
| GATTCACCAGGGAGTATTGC+TGG | 0.391119 | 8.4:+54684411 | MS.gene066900:CDS |
| CTGACGTTTCTTCAAGATTG+AGG | 0.413643 | 8.4:-54685432 | None:intergenic |
| TTCATTTGATAAATACATAT+GGG | 0.421482 | 8.4:+54686570 | MS.gene066900:CDS |
| AGCTTTATCACACCTAATTC+AGG | 0.433665 | 8.4:+54684597 | MS.gene066900:CDS |
| ACTTACTTGTCATCATGAAC+TGG | 0.454154 | 8.4:-54685250 | None:intergenic |
| GTTGGAAGTGGTGGTGATGA+TGG | 0.454983 | 8.4:-54684165 | None:intergenic |
| TCACCTGTTGCCAAAATCAA+TGG | 0.455608 | 8.4:+54684051 | MS.gene066900:CDS |
| TTTGAAATAAGATTGTTTGA+AGG | 0.459190 | 8.4:-54684546 | None:intergenic |
| CATTTGTTTATCAGTTAAGC+TGG | 0.466390 | 8.4:-54685782 | None:intergenic |
| TGTGCTTTCTATGCCTACTT+TGG | 0.468054 | 8.4:-54684010 | None:intergenic |
| TTACAGGTTAACAAGGACTT+TGG | 0.477182 | 8.4:+54686547 | MS.gene066900:intron |
| CATTCGTTTATGCAAGCAGC+TGG | 0.483851 | 8.4:+54686727 | MS.gene066900:CDS |
| TTGACTCTCTTTGTTGCTGG+TGG | 0.490510 | 8.4:-54684237 | None:intergenic |
| GAAGAGGCTTTAGGTTTGTA+GGG | 0.499476 | 8.4:+54686692 | MS.gene066900:CDS |
| TTGCTTATCATGATGAGGAA+TGG | 0.508626 | 8.4:+54685221 | MS.gene066900:CDS |
| AGTCAAAGAGTTTGAAAGAA+GGG | 0.533649 | 8.4:+54684337 | MS.gene066900:CDS |
| GTGCTCAAGTTGGATCTGAT+TGG | 0.533668 | 8.4:+54685408 | MS.gene066900:CDS |
| TTTGGAACTCTGTTACAAGT+TGG | 0.544819 | 8.4:-54684090 | None:intergenic |
| AGGTGATGTAGCTGTGGCTG+TGG | 0.545571 | 8.4:-54684034 | None:intergenic |
| CTCAAGCCAGCAATACTCCC+TGG | 0.554438 | 8.4:-54684417 | None:intergenic |
| AAGTCAAAGAGTTTGAAAGA+AGG | 0.556152 | 8.4:+54684336 | MS.gene066900:CDS |
| TTTAACTTTGGTGAAATTGG+TGG | 0.559341 | 8.4:-54684204 | None:intergenic |
| TGCAGCTCCAAGACCAAAGT+AGG | 0.560303 | 8.4:+54683997 | MS.gene066900:CDS |
| ATCGACATAAGCAGAGTTCG+AGG | 0.564739 | 8.4:+54685829 | MS.gene066900:CDS |
| AGGTGCATTTCAAGTGGCTG+TGG | 0.567532 | 8.4:-54686777 | None:intergenic |
| AGCAAAGACATGATCAGAAG+AGG | 0.567539 | 8.4:+54686676 | MS.gene066900:CDS |
| AGTTTGAAAGAAGGGTCTTG+TGG | 0.570144 | 8.4:+54684345 | MS.gene066900:CDS |
| GCAAGTGATTAAGTGGTCAT+TGG | 0.573542 | 8.4:-54686755 | None:intergenic |
| CAGGGAGTATTGCTGGCTTG+AGG | 0.580636 | 8.4:+54684418 | MS.gene066900:CDS |
| GGCTGTGGCAAGTGATTAAG+TGG | 0.581468 | 8.4:-54686762 | None:intergenic |
| TCATTTGATAAATACATATG+GGG | 0.581577 | 8.4:+54686571 | MS.gene066900:CDS |
| TGGCTTGAGGAGAGAACAGA+TGG | 0.590647 | 8.4:+54684431 | MS.gene066900:CDS |
| TCATGATAAGCAATATAGAT+GGG | 0.591991 | 8.4:-54685211 | None:intergenic |
| GGCAACAGGTGATGTAGCTG+TGG | 0.595305 | 8.4:-54684040 | None:intergenic |
| CTATATTGCTTATCATGATG+AGG | 0.598338 | 8.4:+54685216 | MS.gene066900:CDS |
| TAGGTTTGTAGGGCCAACAG+TGG | 0.605848 | 8.4:+54686702 | MS.gene066900:CDS |
| AGATTGTTTGAAGGATCAAG+AGG | 0.610434 | 8.4:-54684537 | None:intergenic |
| AATTTGATCACTGATTCACC+AGG | 0.618780 | 8.4:+54684399 | MS.gene066900:CDS |
| TGATTAAGTGGTCATTGGTG+AGG | 0.631169 | 8.4:-54686750 | None:intergenic |
| ATGGCCAAACTTGTATTGTG+TGG | 0.631469 | 8.4:-54686617 | None:intergenic |
| GTTATATTTACAGGTTAACA+AGG | 0.634646 | 8.4:+54686540 | MS.gene066900:intron |
| ATAAACGAATGAACCACTGT+TGG | 0.637839 | 8.4:-54686715 | None:intergenic |
| ACAATAAGGTGCATTTCAAG+TGG | 0.639984 | 8.4:-54686783 | None:intergenic |
| GCTTATCATGATGAGGAATG+GGG | 0.660568 | 8.4:+54685223 | MS.gene066900:CDS |
| AGGGTCTTGTGGTTCTACTG+AGG | 0.671323 | 8.4:+54684356 | MS.gene066900:CDS |
| ATTTGATCACTGATTCACCA+GGG | 0.698236 | 8.4:+54684400 | MS.gene066900:CDS |
| TGGCATTGCAGCATGCACAG+AGG | 0.736384 | 8.4:+54684451 | MS.gene066900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTACAATTACATAAAT+AGG | + | chr8.4:54684915-54684934 | MS.gene066900:intron | 10.0% |
| !!! | ATTTTACAATTACATAAATA+GGG | + | chr8.4:54684916-54684935 | MS.gene066900:intron | 10.0% |
| !! | AATGTCTAAAAATAAAAAAG+TGG | - | chr8.4:54685124-54685143 | None:intergenic | 15.0% |
| !! | ATGTCTAAAAATAAAAAAGT+GGG | - | chr8.4:54685123-54685142 | None:intergenic | 15.0% |
| !! | TTCATTTGATAAATACATAT+GGG | + | chr8.4:54686570-54686589 | MS.gene066900:CDS | 15.0% |
| !! | TTGATAAAAAATATTGTCAT+AGG | - | chr8.4:54685035-54685054 | None:intergenic | 15.0% |
| !!! | ATACTTTAGTTTTCTTTAAA+TGG | + | chr8.4:54684646-54684665 | MS.gene066900:intron | 15.0% |
| !!! | TGAAATTTAAATTCTTTTAC+AGG | + | chr8.4:54685725-54685744 | MS.gene066900:intron | 15.0% |
| !! | AACATCATTAGTTATGATAA+TGG | + | chr8.4:54685087-54685106 | MS.gene066900:intron | 20.0% |
| !! | AATTAAAATCTCAATCTTGT+CGG | - | chr8.4:54686217-54686236 | None:intergenic | 20.0% |
| !! | ACATCATTAGTTATGATAAT+GGG | + | chr8.4:54685088-54685107 | MS.gene066900:intron | 20.0% |
| !! | GAAATCTTTGTTAAATTTCT+TGG | - | chr8.4:54684306-54684325 | None:intergenic | 20.0% |
| !! | GTTCATTTGATAAATACATA+TGG | + | chr8.4:54686569-54686588 | MS.gene066900:CDS | 20.0% |
| !! | TCATTTGATAAATACATATG+GGG | + | chr8.4:54686571-54686590 | MS.gene066900:CDS | 20.0% |
| !! | TTAATATTCTCTCTGTAAAT+TGG | + | chr8.4:54686514-54686533 | MS.gene066900:intron | 20.0% |
| !! | TTGTTAACCTGTAAATATAA+CGG | - | chr8.4:54686541-54686560 | None:intergenic | 20.0% |
| !! | TTTAATAAAAAGAGACACAT+TGG | - | chr8.4:54685186-54685205 | None:intergenic | 20.0% |
| !!! | TTTGAAATAAGATTGTTTGA+AGG | - | chr8.4:54684549-54684568 | None:intergenic | 20.0% |
| ! | AAAATGAAGATTGCTCATTA+TGG | + | chr8.4:54684474-54684493 | MS.gene066900:CDS | 25.0% |
| ! | ACAAATGTTGTCTATTAGTT+TGG | + | chr8.4:54685798-54685817 | MS.gene066900:CDS | 25.0% |
| ! | AGAGATCAAACAGAATATAT+GGG | - | chr8.4:54686246-54686265 | None:intergenic | 25.0% |
| ! | ATAATTTGAGAAAACAGAAG+TGG | - | chr8.4:54685579-54685598 | None:intergenic | 25.0% |
| ! | ATCATGATAAGCAATATAGA+TGG | - | chr8.4:54685215-54685234 | None:intergenic | 25.0% |
| ! | ATTAAAATCTCAATCTTGTC+GGG | - | chr8.4:54686216-54686235 | None:intergenic | 25.0% |
| ! | GAATTTCTTCTTTCAAGATT+TGG | - | chr8.4:54684111-54684130 | None:intergenic | 25.0% |
| ! | GAGAATATAGTTCAAAATTG+CGG | - | chr8.4:54686037-54686056 | None:intergenic | 25.0% |
| ! | GCATATTATGATATTATAGC+TGG | + | chr8.4:54685939-54685958 | MS.gene066900:intron | 25.0% |
| ! | GTTATATTTACAGGTTAACA+AGG | + | chr8.4:54686540-54686559 | MS.gene066900:intron | 25.0% |
| ! | TAATCCTCATTATAGTAGTT+TGG | - | chr8.4:54684994-54685013 | None:intergenic | 25.0% |
| ! | TAGAGATCAAACAGAATATA+TGG | - | chr8.4:54686247-54686266 | None:intergenic | 25.0% |
| ! | TCATGATAAGCAATATAGAT+GGG | - | chr8.4:54685214-54685233 | None:intergenic | 25.0% |
| ! | TTTACCAAACTACTATAATG+AGG | + | chr8.4:54684987-54685006 | MS.gene066900:intron | 25.0% |
| !! | CATCATTAGTTATGATAATG+GGG | + | chr8.4:54685089-54685108 | MS.gene066900:intron | 25.0% |
| !! | TAATGCTAATCGAATTTTAG+AGG | + | chr8.4:54685861-54685880 | MS.gene066900:CDS | 25.0% |
| !! | TCTTATTTCAAAAACAAGTG+AGG | + | chr8.4:54684557-54684576 | MS.gene066900:CDS | 25.0% |
| !! | TCTTTGTTATAGTTGAAGTA+AGG | - | chr8.4:54686164-54686183 | None:intergenic | 25.0% |
| !! | TTGTCTATTAGTTTGGAATA+TGG | + | chr8.4:54685805-54685824 | MS.gene066900:CDS | 25.0% |
| !!! | ATGTACTTTTTTCAGAATGA+GGG | + | chr8.4:54685696-54685715 | MS.gene066900:intron | 25.0% |
| !!! | TATGTACTTTTTTCAGAATG+AGG | + | chr8.4:54685695-54685714 | MS.gene066900:intron | 25.0% |
| !!! | TTTGAACTTCTAGTTTTAAG+TGG | + | chr8.4:54685386-54685405 | MS.gene066900:CDS | 25.0% |
| AACTTGTATTGTGTGGAAAT+AGG | - | chr8.4:54686613-54686632 | None:intergenic | 30.0% | |
| AAGCAAATATGAAATGTACC+TGG | + | chr8.4:54686438-54686457 | MS.gene066900:intron | 30.0% | |
| AAGTCAAAGAGTTTGAAAGA+AGG | + | chr8.4:54684336-54684355 | MS.gene066900:CDS | 30.0% | |
| AATTCATGCAAATGTAGTTG+CGG | + | chr8.4:54686010-54686029 | MS.gene066900:intron | 30.0% | |
| AATTGGTCCGTTATATTTAC+AGG | + | chr8.4:54686531-54686550 | MS.gene066900:intron | 30.0% | |
| AGAATTTAATGCAGCAACTT+TGG | + | chr8.4:54685759-54685778 | MS.gene066900:CDS | 30.0% | |
| AGTCAAAGAGTTTGAAAGAA+GGG | + | chr8.4:54684337-54684356 | MS.gene066900:CDS | 30.0% | |
| ATTTCCACACAATACAAGTT+TGG | + | chr8.4:54686613-54686632 | MS.gene066900:CDS | 30.0% | |
| CATTTGTTTATCAGTTAAGC+TGG | - | chr8.4:54685785-54685804 | None:intergenic | 30.0% | |
| CTATATTGCTTATCATGATG+AGG | + | chr8.4:54685216-54685235 | MS.gene066900:CDS | 30.0% | |
| GAGATCAAACAGAATATATG+GGG | - | chr8.4:54686245-54686264 | None:intergenic | 30.0% | |
| GTAGAATGTTCACTAAAAAC+AGG | - | chr8.4:54686073-54686092 | None:intergenic | 30.0% | |
| TATTTCAAAAACAAGTGAGG+AGG | + | chr8.4:54684560-54684579 | MS.gene066900:CDS | 30.0% | |
| ! | ATAAGTGAGATCGAGATTTT+AGG | - | chr8.4:54686288-54686307 | None:intergenic | 30.0% |
| ! | GACTTTAACTTTGGTGAAAT+TGG | - | chr8.4:54684210-54684229 | None:intergenic | 30.0% |
| ! | TTTAACTTTGGTGAAATTGG+TGG | - | chr8.4:54684207-54684226 | None:intergenic | 30.0% |
| !! | ATTGATGCTTTAGAAATCTG+TGG | + | chr8.4:54684798-54684817 | MS.gene066900:intron | 30.0% |
| !! | TCATTGTGTTTTTGTGTGAT+GGG | - | chr8.4:54685290-54685309 | None:intergenic | 30.0% |
| !! | TTATAGCTGGTTCTAAATTG+TGG | + | chr8.4:54685952-54685971 | MS.gene066900:intron | 30.0% |
| !! | TTCATTGTGTTTTTGTGTGA+TGG | - | chr8.4:54685291-54685310 | None:intergenic | 30.0% |
| !! | TTGATGCTTTAGAAATCTGT+GGG | + | chr8.4:54684799-54684818 | MS.gene066900:intron | 30.0% |
| !!! | TGTACTTTTTTCAGAATGAG+GGG | + | chr8.4:54685697-54685716 | MS.gene066900:intron | 30.0% |
| ACAATAAGGTGCATTTCAAG+TGG | - | chr8.4:54686786-54686805 | None:intergenic | 35.0% | |
| ACTTACTTGTCATCATGAAC+TGG | - | chr8.4:54685253-54685272 | None:intergenic | 35.0% | |
| AGATTGTTTGAAGGATCAAG+AGG | - | chr8.4:54684540-54684559 | None:intergenic | 35.0% | |
| ATAAACGAATGAACCACTGT+TGG | - | chr8.4:54686718-54686737 | None:intergenic | 35.0% | |
| ATGAAATGTACCTGGAGTAT+TGG | + | chr8.4:54686446-54686465 | MS.gene066900:intron | 35.0% | |
| ATGTCTTCACTGGAATCTTA+TGG | - | chr8.4:54686639-54686658 | None:intergenic | 35.0% | |
| CTCTCTGAATTACCTGAATT+AGG | - | chr8.4:54684612-54684631 | None:intergenic | 35.0% | |
| GTTTGACACTAACACTAACA+CGG | + | chr8.4:54685528-54685547 | MS.gene066900:intron | 35.0% | |
| TATATTTGTTCGCGTAGAAC+TGG | - | chr8.4:54684766-54684785 | None:intergenic | 35.0% | |
| TCAGACACATCATAAAGTGT+CGG | - | chr8.4:54685497-54685516 | None:intergenic | 35.0% | |
| TGAAGAAACGTCAGAATTTC+AGG | + | chr8.4:54685441-54685460 | MS.gene066900:CDS | 35.0% | |
| TGCTTATCATGATGAGGAAT+GGG | + | chr8.4:54685222-54685241 | MS.gene066900:CDS | 35.0% | |
| TTACAGGTTAACAAGGACTT+TGG | + | chr8.4:54686547-54686566 | MS.gene066900:intron | 35.0% | |
| TTGCTTATCATGATGAGGAA+TGG | + | chr8.4:54685221-54685240 | MS.gene066900:CDS | 35.0% | |
| ! | AAAAATGCTTTTGCACATGC+AGG | + | chr8.4:54685357-54685376 | MS.gene066900:intron | 35.0% |
| ! | AGCTTTATCACACCTAATTC+AGG | + | chr8.4:54684597-54684616 | MS.gene066900:CDS | 35.0% |
| ! | TGAAATGTACCTGGAGTATT+GGG | + | chr8.4:54686447-54686466 | MS.gene066900:intron | 35.0% |
| ! | TTTGGAACTCTGTTACAAGT+TGG | - | chr8.4:54684093-54684112 | None:intergenic | 35.0% |
| !! | AATTTGATCACTGATTCACC+AGG | + | chr8.4:54684399-54684418 | MS.gene066900:CDS | 35.0% |
| !! | ATTTGATCACTGATTCACCA+GGG | + | chr8.4:54684400-54684419 | MS.gene066900:CDS | 35.0% |
| !! | GATGGTAGTGAAAGTGATTT+TGG | - | chr8.4:54684150-54684169 | None:intergenic | 35.0% |
| !! | GGATTCAGACTTGTTATGTA+AGG | - | chr8.4:54684745-54684764 | None:intergenic | 35.0% |
| !! | TCTGATTTTGATGTCTTCAC+TGG | - | chr8.4:54686649-54686668 | None:intergenic | 35.0% |
| !! | TTACAAGTTGGTTGAAGAAC+AGG | - | chr8.4:54684081-54684100 | None:intergenic | 35.0% |
| !!! | AACAGGTCTTCCATTGATTT+TGG | - | chr8.4:54684064-54684083 | None:intergenic | 35.0% |
| AAAAGTGAGAGACCAAGTAG+AGG | - | chr8.4:54685917-54685936 | None:intergenic | 40.0% | |
| ACATGATCAGAAGAGGCTTT+AGG | + | chr8.4:54686683-54686702 | MS.gene066900:CDS | 40.0% | |
| AGACCAAGTAGAGGAACAAA+AGG | - | chr8.4:54685908-54685927 | None:intergenic | 40.0% | |
| AGCAAAGACATGATCAGAAG+AGG | + | chr8.4:54686676-54686695 | MS.gene066900:CDS | 40.0% | |
| AGTTTGAAAGAAGGGTCTTG+TGG | + | chr8.4:54684345-54684364 | MS.gene066900:CDS | 40.0% | |
| ATGGCCAAACTTGTATTGTG+TGG | - | chr8.4:54686620-54686639 | None:intergenic | 40.0% | |
| ATGTGACACATGTCACATTG+TGG | + | chr8.4:54686349-54686368 | MS.gene066900:intron | 40.0% | |
| ATGTGACATGTGTCACATTG+TGG | - | chr8.4:54686347-54686366 | None:intergenic | 40.0% | |
| CAAACAGAATATATGGGGTC+AGG | - | chr8.4:54686240-54686259 | None:intergenic | 40.0% | |
| CTGACGTTTCTTCAAGATTG+AGG | - | chr8.4:54685435-54685454 | None:intergenic | 40.0% | |
| GATCTCACTTATGTGACTTG+TGG | + | chr8.4:54686296-54686315 | MS.gene066900:intron | 40.0% | |
| GCAAGTGATTAAGTGGTCAT+TGG | - | chr8.4:54686758-54686777 | None:intergenic | 40.0% | |
| GCTTATCATGATGAGGAATG+GGG | + | chr8.4:54685223-54685242 | MS.gene066900:CDS | 40.0% | |
| TCACCTGTTGCCAAAATCAA+TGG | + | chr8.4:54684051-54684070 | MS.gene066900:CDS | 40.0% | |
| TGATTAAGTGGTCATTGGTG+AGG | - | chr8.4:54686753-54686772 | None:intergenic | 40.0% | |
| TGTGCTTTCTATGCCTACTT+TGG | - | chr8.4:54684013-54684032 | None:intergenic | 40.0% | |
| TTCAAAAACAAGTGAGGAGG+AGG | + | chr8.4:54684563-54684582 | MS.gene066900:CDS | 40.0% | |
| TTCTATGCCTACTTTGGTCT+TGG | - | chr8.4:54684007-54684026 | None:intergenic | 40.0% | |
| ! | GAAACGTCAGAATTTCAGGT+TGG | + | chr8.4:54685445-54685464 | MS.gene066900:intron | 40.0% |
| ! | GACAGTGTAGGTATTGTGTT+TGG | + | chr8.4:54685618-54685637 | MS.gene066900:intron | 40.0% |
| ! | GGTAGTGAAAGTGATTTTGG+TGG | - | chr8.4:54684147-54684166 | None:intergenic | 40.0% |
| ! | GGTCTTGGTGACTTTAACTT+TGG | - | chr8.4:54684219-54684238 | None:intergenic | 40.0% |
| !! | AGAAGAGGCTTTAGGTTTGT+AGG | + | chr8.4:54686691-54686710 | MS.gene066900:CDS | 40.0% |
| !! | CTGGTTCTAAATTGTGGTTG+CGG | + | chr8.4:54685958-54685977 | MS.gene066900:intron | 40.0% |
| !! | GAAATGTACCTGGAGTATTG+GGG | + | chr8.4:54686448-54686467 | MS.gene066900:intron | 40.0% |
| !! | GAAGAGGCTTTAGGTTTGTA+GGG | + | chr8.4:54686692-54686711 | MS.gene066900:CDS | 40.0% |
| !! | GTTTTAAGTGGTGCTCAAGT+TGG | + | chr8.4:54685398-54685417 | MS.gene066900:CDS | 40.0% |
| !! | TCATTGACTCTCTTTGTTGC+TGG | - | chr8.4:54684243-54684262 | None:intergenic | 40.0% |
| !!! | CTTCCATTGATTTTGGCAAC+AGG | - | chr8.4:54684057-54684076 | None:intergenic | 40.0% |
| !!! | GATGAAGTTTTGGTTGGAAG+TGG | - | chr8.4:54684180-54684199 | None:intergenic | 40.0% |
| !!! | GGTGTTGATGAAGTTTTGGT+TGG | - | chr8.4:54684186-54684205 | None:intergenic | 40.0% |
| !!! | TGGTGGTGTTGATGAAGTTT+TGG | - | chr8.4:54684190-54684209 | None:intergenic | 40.0% |
| ATCCCACTTGTGTGACATTG+TGG | - | chr8.4:54686401-54686420 | None:intergenic | 45.0% | |
| ATCGACATAAGCAGAGTTCG+AGG | + | chr8.4:54685829-54685848 | MS.gene066900:CDS | 45.0% | |
| CATTCGTTTATGCAAGCAGC+TGG | + | chr8.4:54686727-54686746 | MS.gene066900:CDS | 45.0% | |
| TGACATGTGTCACATTGTGG+TGG | - | chr8.4:54686344-54686363 | None:intergenic | 45.0% | |
| TTGACTCTCTTTGTTGCTGG+TGG | - | chr8.4:54684240-54684259 | None:intergenic | 45.0% | |
| ! | AGTAGAGGAACAAAAGGCAC+AGG | - | chr8.4:54685902-54685921 | None:intergenic | 45.0% |
| ! | GTGCCTTTTGTTCCTCTACT+TGG | + | chr8.4:54685902-54685921 | MS.gene066900:intron | 45.0% |
| ! | GTGTGATGGGAAAGAGAAGT+GGG | - | chr8.4:54685277-54685296 | None:intergenic | 45.0% |
| ! | TGTGTGATGGGAAAGAGAAG+TGG | - | chr8.4:54685278-54685297 | None:intergenic | 45.0% |
| !! | GTGCTCAAGTTGGATCTGAT+TGG | + | chr8.4:54685408-54685427 | MS.gene066900:CDS | 45.0% |
| !!! | GAAGTTTTGGTTGGAAGTGG+TGG | - | chr8.4:54684177-54684196 | None:intergenic | 45.0% |
| CACTGTCACTGAGACAGACA+CGG | - | chr8.4:54685605-54685624 | None:intergenic | 50.0% | |
| CACTTGTGTGACATTGTGGC+GGG | - | chr8.4:54686397-54686416 | None:intergenic | 50.0% | |
| CCACTTGTGTGACATTGTGG+CGG | - | chr8.4:54686398-54686417 | None:intergenic | 50.0% | |
| CGCCACAATGTCACACAAGT+GGG | + | chr8.4:54686396-54686415 | MS.gene066900:intron | 50.0% | |
| CTCTTTGTTGCTGGTGGTCT+TGG | - | chr8.4:54684234-54684253 | None:intergenic | 50.0% | |
| GGCTGTGGCAAGTGATTAAG+TGG | - | chr8.4:54686765-54686784 | None:intergenic | 50.0% | |
| GTCTGTCTCAGTGACAGTGT+AGG | + | chr8.4:54685606-54685625 | MS.gene066900:intron | 50.0% | |
| TAGGTTTGTAGGGCCAACAG+TGG | + | chr8.4:54686702-54686721 | MS.gene066900:CDS | 50.0% | |
| TGCAGCTCCAAGACCAAAGT+AGG | + | chr8.4:54683997-54684016 | MS.gene066900:CDS | 50.0% | |
| TGGCTTGAGGAGAGAACAGA+TGG | + | chr8.4:54684431-54684450 | MS.gene066900:CDS | 50.0% | |
| ! | AGGGTCTTGTGGTTCTACTG+AGG | + | chr8.4:54684356-54684375 | MS.gene066900:CDS | 50.0% |
| ! | AGGTGCATTTCAAGTGGCTG+TGG | - | chr8.4:54686780-54686799 | None:intergenic | 50.0% |
| ! | GTTGGAAGTGGTGGTGATGA+TGG | - | chr8.4:54684168-54684187 | None:intergenic | 50.0% |
| !! | AGAGAGTACCCCAATACTCC+AGG | - | chr8.4:54686459-54686478 | None:intergenic | 50.0% |
| !! | GATTCACCAGGGAGTATTGC+TGG | + | chr8.4:54684411-54684430 | MS.gene066900:CDS | 50.0% |
| !! | GTGTCACATTGTGGTGGACA+AGG | - | chr8.4:54686338-54686357 | None:intergenic | 50.0% |
| AGGTGATGTAGCTGTGGCTG+TGG | - | chr8.4:54684037-54684056 | None:intergenic | 55.0% | |
| CCGCCACAATGTCACACAAG+TGG | + | chr8.4:54686395-54686414 | MS.gene066900:intron | 55.0% | |
| CTCAAGCCAGCAATACTCCC+TGG | - | chr8.4:54684420-54684439 | None:intergenic | 55.0% | |
| GGCAACAGGTGATGTAGCTG+TGG | - | chr8.4:54684043-54684062 | None:intergenic | 55.0% | |
| TGGCATTGCAGCATGCACAG+AGG | + | chr8.4:54684451-54684470 | MS.gene066900:CDS | 55.0% | |
| !! | CAGGGAGTATTGCTGGCTTG+AGG | + | chr8.4:54684418-54684437 | MS.gene066900:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 54683994 | 54686813 | 54683994 | ID=MS.gene066900 |
| chr8.4 | mRNA | 54683994 | 54686813 | 54683994 | ID=MS.gene066900.t1;Parent=MS.gene066900 |
| chr8.4 | exon | 54683994 | 54684618 | 54683994 | ID=MS.gene066900.t1.exon1;Parent=MS.gene066900.t1 |
| chr8.4 | CDS | 54683994 | 54684618 | 54683994 | ID=cds.MS.gene066900.t1;Parent=MS.gene066900.t1 |
| chr8.4 | exon | 54685209 | 54685266 | 54685209 | ID=MS.gene066900.t1.exon2;Parent=MS.gene066900.t1 |
| chr8.4 | CDS | 54685209 | 54685266 | 54685209 | ID=cds.MS.gene066900.t1;Parent=MS.gene066900.t1 |
| chr8.4 | exon | 54685379 | 54685462 | 54685379 | ID=MS.gene066900.t1.exon3;Parent=MS.gene066900.t1 |
| chr8.4 | CDS | 54685379 | 54685462 | 54685379 | ID=cds.MS.gene066900.t1;Parent=MS.gene066900.t1 |
| chr8.4 | exon | 54685747 | 54685882 | 54685747 | ID=MS.gene066900.t1.exon4;Parent=MS.gene066900.t1 |
| chr8.4 | CDS | 54685747 | 54685882 | 54685747 | ID=cds.MS.gene066900.t1;Parent=MS.gene066900.t1 |
| chr8.4 | exon | 54686553 | 54686813 | 54686553 | ID=MS.gene066900.t1.exon5;Parent=MS.gene066900.t1 |
| chr8.4 | CDS | 54686553 | 54686813 | 54686553 | ID=cds.MS.gene066900.t1;Parent=MS.gene066900.t1 |
| Gene Sequence |
| Protein sequence |
