Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067159.t1 | KEH35434.1 | 86.8 | 152 | 12 | 2 | 1 | 145 | 20 | 170 | 6.60E-66 | 260 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067159.t1 | A0A072V0A8 | 86.8 | 152 | 12 | 2 | 1 | 145 | 20 | 170 | 4.7e-66 | 260.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051746 | MS.gene067159 | -0.801818 | 7.52E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene067159 | -0.812892 | 3.37E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene067159 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene055174 | MS.gene067159 | -0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene056830 | MS.gene067159 | 0.802568 | 5.28E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene067159 | -0.840963 | 6.33E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGCTGTTAAGAATTA+TGG | 0.144268 | 3.4:+82902186 | MS.gene067159:CDS |
| AACCCAAACTGGACCAAATT+TGG | 0.146669 | 3.4:+82901855 | MS.gene067159:CDS |
| AGCAACTTTCAATTTGATTT+TGG | 0.153995 | 3.4:+82901795 | MS.gene067159:CDS |
| GCATTGGCATATTTCCTTAA+TGG | 0.192152 | 3.4:+82903595 | MS.gene067159:CDS |
| TGGATTGGAGAGGAAAATTT+TGG | 0.234442 | 3.4:+82901815 | MS.gene067159:CDS |
| TGCAGTAGGATTGGGTATTA+AGG | 0.261399 | 3.4:+82901143 | None:intergenic |
| ACCCCAAATTTGGTCCAGTT+TGG | 0.293884 | 3.4:-82901858 | None:intergenic |
| CCCCAAATTTGGTCCAGTTT+GGG | 0.293983 | 3.4:-82901857 | None:intergenic |
| AATCTTATGATGAGCCATTA+AGG | 0.294555 | 3.4:-82903609 | None:intergenic |
| ACCCAAACTGGACCAAATTT+GGG | 0.315467 | 3.4:+82901856 | MS.gene067159:CDS |
| CCATAATTCTTAACAGCAAT+TGG | 0.323280 | 3.4:-82902186 | None:intergenic |
| GATCTTATATTCCGGTTTGA+TGG | 0.373999 | 3.4:-82901169 | None:intergenic |
| ATACACCCTTCTGCATGAAA+TGG | 0.413329 | 3.4:+82903513 | MS.gene067159:CDS |
| CAGAGAAGGAAAACCCAAAC+TGG | 0.417760 | 3.4:+82901844 | MS.gene067159:CDS |
| CGTGGAATATCTCCCACATT+TGG | 0.418255 | 3.4:-82901771 | None:intergenic |
| GCTATATATTTGTTCACAAT+GGG | 0.422820 | 3.4:-82902139 | None:intergenic |
| CCCACATTTGGTAGCAAATG+AGG | 0.464243 | 3.4:-82901759 | None:intergenic |
| TCAAATTGAAAGTTGCTTCG+TGG | 0.468559 | 3.4:-82901789 | None:intergenic |
| GGCGGTGCGATCTTATATTC+CGG | 0.475988 | 3.4:-82901177 | None:intergenic |
| TACACCCTTCTGCATGAAAT+GGG | 0.476910 | 3.4:+82903514 | MS.gene067159:CDS |
| GGCTATATATTTGTTCACAA+TGG | 0.484861 | 3.4:-82902140 | None:intergenic |
| GCCTCATTTGCTACCAAATG+TGG | 0.486271 | 3.4:+82901758 | MS.gene067159:intron |
| CAACCTCTCGGCTGAGTCCA+TGG | 0.488771 | 3.4:-82902161 | None:intergenic |
| CGATGATGTATCAGAAGCCT+TGG | 0.505994 | 3.4:-82901895 | None:intergenic |
| GATGTATCAGAAGCCTTGGT+TGG | 0.511864 | 3.4:-82901891 | None:intergenic |
| TATTAAGGTTGCCATCAAAC+CGG | 0.518688 | 3.4:+82901158 | MS.gene067159:CDS |
| ACGGAGACAGAGAACATACT+TGG | 0.528999 | 3.4:-82902220 | None:intergenic |
| AAAATCCCATTTCATGCAGA+AGG | 0.534230 | 3.4:-82903519 | None:intergenic |
| AGACAGAGAACATACTTGGT+TGG | 0.554215 | 3.4:-82902216 | None:intergenic |
| GAAGGTTCAAGAATTTGTCA+AGG | 0.564438 | 3.4:+82903489 | MS.gene067159:intron |
| GGAATATAAGATCGCACCGC+CGG | 0.569586 | 3.4:+82901179 | MS.gene067159:CDS |
| AAGGTTCAAGAATTTGTCAA+GGG | 0.577160 | 3.4:+82903490 | MS.gene067159:intron |
| CAGCAATTGGAACAACCTCT+CGG | 0.588372 | 3.4:-82902173 | None:intergenic |
| ATCATTGTCATACATAAGCA+AGG | 0.605733 | 3.4:-82903563 | None:intergenic |
| TGTGAACAAATATATAGCCA+TGG | 0.610007 | 3.4:+82902144 | MS.gene067159:CDS |
| CAATGATACAGACAAGGCAT+TGG | 0.625236 | 3.4:+82903579 | MS.gene067159:CDS |
| CCTCATTTGCTACCAAATGT+GGG | 0.632935 | 3.4:+82901759 | MS.gene067159:CDS |
| CCCAAACTGGACCAAATTTG+GGG | 0.636289 | 3.4:+82901857 | MS.gene067159:CDS |
| GGTAGAAAATCTTCCAACCA+AGG | 0.640328 | 3.4:+82901878 | MS.gene067159:CDS |
| AAATCCCATTTCATGCAGAA+GGG | 0.642353 | 3.4:-82903518 | None:intergenic |
| GTATGACAATGATACAGACA+AGG | 0.732064 | 3.4:+82903573 | MS.gene067159:CDS |
| TAGCCATGGACTCAGCCGAG+AGG | 0.740668 | 3.4:+82902158 | MS.gene067159:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTTAGAATTGA+TGG | + | chr3.4:82901327-82901346 | MS.gene067159:intron | 10.0% |
| !!! | AAAAAAAATTTAGAATTGAT+GGG | + | chr3.4:82901328-82901347 | MS.gene067159:intron | 10.0% |
| !! | AACTTATTATTAAAAGAATG+AGG | + | chr3.4:82901559-82901578 | MS.gene067159:intron | 15.0% |
| !! | ACTTATTATTAAAAGAATGA+GGG | + | chr3.4:82901560-82901579 | MS.gene067159:intron | 15.0% |
| !!! | AAAAAAATTTAGAATTGATG+GGG | + | chr3.4:82901329-82901348 | MS.gene067159:intron | 15.0% |
| !!! | AATTTACTGGTTTTTTTTAT+CGG | + | chr3.4:82901690-82901709 | MS.gene067159:intron | 15.0% |
| !!! | CTATTTTTTATATATGATTG+TGG | + | chr3.4:82903141-82903160 | MS.gene067159:intron | 15.0% |
| !! | AATAAACTGTTTACTTGTAT+GGG | - | chr3.4:82902687-82902706 | None:intergenic | 20.0% |
| !! | ATAAGTTCACAGTAATAATT+TGG | - | chr3.4:82902415-82902434 | None:intergenic | 20.0% |
| !! | CAAATGTATTATTCATTTGA+AGG | + | chr3.4:82903471-82903490 | MS.gene067159:intron | 20.0% |
| !! | GAAACTATATTATCTTTAGT+TGG | - | chr3.4:82903346-82903365 | None:intergenic | 20.0% |
| !! | TAATATGAAACTATATTTGC+AGG | + | chr3.4:82902102-82902121 | MS.gene067159:intron | 20.0% |
| !! | TACTCCTCAAAATAAAATTA+GGG | + | chr3.4:82901285-82901304 | MS.gene067159:intron | 20.0% |
| !! | TTACTCCTCAAAATAAAATT+AGG | + | chr3.4:82901284-82901303 | MS.gene067159:intron | 20.0% |
| !! | TTTATATATGATTGTGGTTT+GGG | + | chr3.4:82903147-82903166 | MS.gene067159:intron | 20.0% |
| !!! | AAGTAATTACTGATTATAAC+TGG | - | chr3.4:82902757-82902776 | None:intergenic | 20.0% |
| !!! | AATTGATTTCTGTCAATAAT+AGG | - | chr3.4:82902612-82902631 | None:intergenic | 20.0% |
| !!! | AGTAATTACTGATTATAACT+GGG | - | chr3.4:82902756-82902775 | None:intergenic | 20.0% |
| !!! | ATAGTTAAATATGACTTTTG+AGG | + | chr3.4:82901717-82901736 | MS.gene067159:intron | 20.0% |
| !!! | ATTTTCAAATATTGATTTCG+TGG | + | chr3.4:82903302-82903321 | MS.gene067159:intron | 20.0% |
| !!! | TAGTTAAATATGACTTTTGA+GGG | + | chr3.4:82901718-82901737 | MS.gene067159:intron | 20.0% |
| !!! | TTCACTTTGTCATTTTTATA+AGG | + | chr3.4:82902848-82902867 | MS.gene067159:intron | 20.0% |
| !!! | TTTTACTTTTTGATCCAAAA+TGG | + | chr3.4:82902641-82902660 | MS.gene067159:intron | 20.0% |
| !!! | TTTTATATATGATTGTGGTT+TGG | + | chr3.4:82903146-82903165 | MS.gene067159:intron | 20.0% |
| ! | AAACCCAAACTAGAATAAAT+CGG | - | chr3.4:82901960-82901979 | None:intergenic | 25.0% |
| ! | ATAAGTTAAATTTAAGCACG+AGG | - | chr3.4:82901546-82901565 | None:intergenic | 25.0% |
| ! | ATCATGTCCATTATAAGTTA+CGG | - | chr3.4:82902242-82902261 | None:intergenic | 25.0% |
| ! | ATTTAGCTGATCAAAATATC+TGG | - | chr3.4:82903181-82903200 | None:intergenic | 25.0% |
| ! | CAATAAACTGTTTACTTGTA+TGG | - | chr3.4:82902688-82902707 | None:intergenic | 25.0% |
| ! | GCGTAATATCTTAAACTTTA+GGG | - | chr3.4:82901449-82901468 | None:intergenic | 25.0% |
| ! | GCTATATATTTGTTCACAAT+GGG | - | chr3.4:82902142-82902161 | None:intergenic | 25.0% |
| ! | TAAGTTAAATTTAAGCACGA+GGG | - | chr3.4:82901545-82901564 | None:intergenic | 25.0% |
| ! | TAATGTTTAACAGCTGAATA+CGG | - | chr3.4:82902896-82902915 | None:intergenic | 25.0% |
| ! | TTCAGAATTCAGAAGAATAA+CGG | - | chr3.4:82901230-82901249 | None:intergenic | 25.0% |
| !! | AGTTAAATATGACTTTTGAG+GGG | + | chr3.4:82901719-82901738 | MS.gene067159:intron | 25.0% |
| !! | ATATCTTAAACTTTAGGGAT+AGG | - | chr3.4:82901444-82901463 | None:intergenic | 25.0% |
| !! | GACAGAAATCAATTTTCAAT+AGG | + | chr3.4:82902618-82902637 | MS.gene067159:intron | 25.0% |
| !! | GTTGAAAAATTCTTCCATTT+TGG | - | chr3.4:82902658-82902677 | None:intergenic | 25.0% |
| !! | TCTACTTAGATTTCATTTTG+TGG | + | chr3.4:82901377-82901396 | MS.gene067159:intron | 25.0% |
| !!! | AGCAACTTTCAATTTGATTT+TGG | + | chr3.4:82901795-82901814 | MS.gene067159:CDS | 25.0% |
| !!! | CTTTCAATTTGATTTTGGAT+TGG | + | chr3.4:82901800-82901819 | MS.gene067159:CDS | 25.0% |
| !!! | TTTATTCTAGTTTGGGTTTA+TGG | + | chr3.4:82901961-82901980 | MS.gene067159:intron | 25.0% |
| AAGGTTCAAGAATTTGTCAA+GGG | + | chr3.4:82903490-82903509 | MS.gene067159:intron | 30.0% | |
| AGTTCACAGTAATAATTTGG+AGG | - | chr3.4:82902412-82902431 | None:intergenic | 30.0% | |
| ATCATTGTCATACATAAGCA+AGG | - | chr3.4:82903566-82903585 | None:intergenic | 30.0% | |
| CCATAATTCTTAACAGCAAT+TGG | - | chr3.4:82902189-82902208 | None:intergenic | 30.0% | |
| CGCGTAATATCTTAAACTTT+AGG | - | chr3.4:82901450-82901469 | None:intergenic | 30.0% | |
| GGCTATATATTTGTTCACAA+TGG | - | chr3.4:82902143-82902162 | None:intergenic | 30.0% | |
| GTGAGAATCCAATTTAGATA+CGG | + | chr3.4:82903082-82903101 | MS.gene067159:intron | 30.0% | |
| TGAAAGTTACACGCATTAAT+GGG | + | chr3.4:82903237-82903256 | MS.gene067159:intron | 30.0% | |
| TGAATTATTCGATCTTTGCA+TGG | - | chr3.4:82902347-82902366 | None:intergenic | 30.0% | |
| TGTGAACAAATATATAGCCA+TGG | + | chr3.4:82902144-82902163 | MS.gene067159:CDS | 30.0% | |
| TTAAAAGAATGAGGGTGATT+CGG | + | chr3.4:82901568-82901587 | MS.gene067159:intron | 30.0% | |
| ! | AAGATTTTCTACCCCAAATT+TGG | - | chr3.4:82901871-82901890 | None:intergenic | 30.0% |
| ! | AGATTAGTTGTTTCATGACA+TGG | - | chr3.4:82901635-82901654 | None:intergenic | 30.0% |
| ! | AGTTCCGATTTATTCTAGTT+TGG | + | chr3.4:82901953-82901972 | MS.gene067159:intron | 30.0% |
| ! | CCAATTGCTGTTAAGAATTA+TGG | + | chr3.4:82902186-82902205 | MS.gene067159:CDS | 30.0% |
| ! | TAACTTTCAGTATGGCTTTA+AGG | - | chr3.4:82903226-82903245 | None:intergenic | 30.0% |
| ! | TCTGAAATGCTTATGCTATT+AGG | + | chr3.4:82901652-82901671 | MS.gene067159:intron | 30.0% |
| ! | TTTTCAAACATGCTAGAAAG+TGG | + | chr3.4:82902457-82902476 | MS.gene067159:intron | 30.0% |
| !! | AATTTGATTTTGGATTGGAG+AGG | + | chr3.4:82901805-82901824 | MS.gene067159:CDS | 30.0% |
| !! | GTTCCGATTTATTCTAGTTT+GGG | + | chr3.4:82901954-82901973 | MS.gene067159:intron | 30.0% |
| !!! | AGCACCCTAATTTTATTTTG+AGG | - | chr3.4:82901292-82901311 | None:intergenic | 30.0% |
| AAAACATGATTTCCAGTTGC+TGG | - | chr3.4:82903117-82903136 | None:intergenic | 35.0% | |
| AAAATCCCATTTCATGCAGA+AGG | - | chr3.4:82903522-82903541 | None:intergenic | 35.0% | |
| AAACCAGTAAATTGTCTCCA+CGG | - | chr3.4:82901683-82901702 | None:intergenic | 35.0% | |
| AAATCCCATTTCATGCAGAA+GGG | - | chr3.4:82903521-82903540 | None:intergenic | 35.0% | |
| AAGAGCCATGTAATTAGAAC+TGG | - | chr3.4:82902816-82902835 | None:intergenic | 35.0% | |
| AATGCGTGTAACTTTCAGTA+TGG | - | chr3.4:82903234-82903253 | None:intergenic | 35.0% | |
| ACGAGTTGCAAATATCTGAT+TGG | + | chr3.4:82903027-82903046 | MS.gene067159:intron | 35.0% | |
| ATCTTTGCATGGTCAGTATA+TGG | - | chr3.4:82902336-82902355 | None:intergenic | 35.0% | |
| CAAAAGCGATTGAATCTTAC+CGG | - | chr3.4:82901201-82901220 | None:intergenic | 35.0% | |
| CAACATCTGCATAATGAATC+AGG | - | chr3.4:82901996-82902015 | None:intergenic | 35.0% | |
| CTGAAAGTTACACGCATTAA+TGG | + | chr3.4:82903236-82903255 | MS.gene067159:intron | 35.0% | |
| CTGGATATCCGTATCTAAAT+TGG | - | chr3.4:82903093-82903112 | None:intergenic | 35.0% | |
| GAAGGTTCAAGAATTTGTCA+AGG | + | chr3.4:82903489-82903508 | MS.gene067159:intron | 35.0% | |
| GACGCCAATGTTCAAAATAT+GGG | + | chr3.4:82902960-82902979 | MS.gene067159:intron | 35.0% | |
| GGATTGAATTATTGACCACT+TGG | + | chr3.4:82901589-82901608 | MS.gene067159:intron | 35.0% | |
| GTATGACAATGATACAGACA+AGG | + | chr3.4:82903573-82903592 | MS.gene067159:CDS | 35.0% | |
| TATTAAGGTTGCCATCAAAC+CGG | + | chr3.4:82901158-82901177 | MS.gene067159:CDS | 35.0% | |
| TCAAATTGAAAGTTGCTTCG+TGG | - | chr3.4:82901792-82901811 | None:intergenic | 35.0% | |
| TCAGTATATGGAGAGATGAT+GGG | - | chr3.4:82902324-82902343 | None:intergenic | 35.0% | |
| TCATATTACACCATGTGAGT+TGG | - | chr3.4:82902090-82902109 | None:intergenic | 35.0% | |
| TCTGTCTCCGTAACTTATAA+TGG | + | chr3.4:82902232-82902251 | MS.gene067159:intron | 35.0% | |
| TTTAACAGCTGAATACGGTT+AGG | - | chr3.4:82902891-82902910 | None:intergenic | 35.0% | |
| ! | ATACGATTGTTTTCTGCTTC+TGG | + | chr3.4:82902524-82902543 | MS.gene067159:intron | 35.0% |
| ! | CTCTTCCAGTTCTAATTACA+TGG | + | chr3.4:82902808-82902827 | MS.gene067159:intron | 35.0% |
| ! | GATCTTATATTCCGGTTTGA+TGG | - | chr3.4:82901172-82901191 | None:intergenic | 35.0% |
| ! | GCATTGGCATATTTCCTTAA+TGG | + | chr3.4:82903595-82903614 | MS.gene067159:CDS | 35.0% |
| ! | TCTTAAACTTTAGGGATAGG+TGG | - | chr3.4:82901441-82901460 | None:intergenic | 35.0% |
| ! | TGCAAATATCTGATTGGTTG+TGG | + | chr3.4:82903033-82903052 | MS.gene067159:intron | 35.0% |
| !! | GTGTCCCATATTTTGAACAT+TGG | - | chr3.4:82902967-82902986 | None:intergenic | 35.0% |
| !! | TGGATTGGAGAGGAAAATTT+TGG | + | chr3.4:82901815-82901834 | MS.gene067159:CDS | 35.0% |
| !!! | GATGGGGCTTTTTTAAGATA+TGG | + | chr3.4:82901345-82901364 | MS.gene067159:intron | 35.0% |
| AACCCAAACTGGACCAAATT+TGG | + | chr3.4:82901855-82901874 | MS.gene067159:CDS | 40.0% | |
| ACATTGCCATCTATGAAGCA+CGG | + | chr3.4:82902938-82902957 | MS.gene067159:intron | 40.0% | |
| ACCCAAACTGGACCAAATTT+GGG | + | chr3.4:82901856-82901875 | MS.gene067159:CDS | 40.0% | |
| AGACAGAGAACATACTTGGT+TGG | - | chr3.4:82902219-82902238 | None:intergenic | 40.0% | |
| ATACACCCTTCTGCATGAAA+TGG | + | chr3.4:82903513-82903532 | MS.gene067159:CDS | 40.0% | |
| CAATGATACAGACAAGGCAT+TGG | + | chr3.4:82903579-82903598 | MS.gene067159:CDS | 40.0% | |
| CTTTCTGCTTCTCTTGATTC+TGG | + | chr3.4:82902380-82902399 | MS.gene067159:intron | 40.0% | |
| GACACACACACACATATCTT+GGG | + | chr3.4:82902988-82903007 | MS.gene067159:intron | 40.0% | |
| GGACGCCAATGTTCAAAATA+TGG | + | chr3.4:82902959-82902978 | MS.gene067159:intron | 40.0% | |
| GGTAGAAAATCTTCCAACCA+AGG | + | chr3.4:82901878-82901897 | MS.gene067159:CDS | 40.0% | |
| GTCAGTATATGGAGAGATGA+TGG | - | chr3.4:82902325-82902344 | None:intergenic | 40.0% | |
| TACACCCTTCTGCATGAAAT+GGG | + | chr3.4:82903514-82903533 | MS.gene067159:CDS | 40.0% | |
| TATGCTATTAGGTAAAGCCG+TGG | + | chr3.4:82901663-82901682 | MS.gene067159:intron | 40.0% | |
| TCATAGATGGCAATGTGGTT+TGG | - | chr3.4:82902934-82902953 | None:intergenic | 40.0% | |
| TCTACTGTTTCCAACTCACA+TGG | + | chr3.4:82902077-82902096 | MS.gene067159:intron | 40.0% | |
| TGACACACACACACATATCT+TGG | + | chr3.4:82902987-82903006 | MS.gene067159:intron | 40.0% | |
| TGATACATCATCGTCGTCAA+AGG | + | chr3.4:82901905-82901924 | MS.gene067159:intron | 40.0% | |
| ! | CCTCATTTGCTACCAAATGT+GGG | + | chr3.4:82901759-82901778 | MS.gene067159:CDS | 40.0% |
| ! | TCGTGGTGTTTTCTGAGTTT+TGG | + | chr3.4:82903319-82903338 | MS.gene067159:intron | 40.0% |
| AACGTTGTACTGTAGCCTGT+AGG | + | chr3.4:82902780-82902799 | MS.gene067159:intron | 45.0% | |
| AAGCCGTGGAGACAATTTAC+TGG | + | chr3.4:82901677-82901696 | MS.gene067159:intron | 45.0% | |
| AAGCGATTGAATCTTACCGG+CGG | - | chr3.4:82901198-82901217 | None:intergenic | 45.0% | |
| ACACACACACATATCTTGGG+TGG | + | chr3.4:82902991-82903010 | MS.gene067159:intron | 45.0% | |
| ACCCCAAATTTGGTCCAGTT+TGG | - | chr3.4:82901861-82901880 | None:intergenic | 45.0% | |
| ACGGAGACAGAGAACATACT+TGG | - | chr3.4:82902223-82902242 | None:intergenic | 45.0% | |
| ACTCCTCTTTCCCAGCATAA+AGG | - | chr3.4:82902559-82902578 | None:intergenic | 45.0% | |
| AGCATGCACGCAATGTTGTA+TGG | - | chr3.4:82902501-82902520 | None:intergenic | 45.0% | |
| ATGATTTCCAGTTGCTGGTC+TGG | - | chr3.4:82903112-82903131 | None:intergenic | 45.0% | |
| CACACACACATATCTTGGGT+GGG | + | chr3.4:82902992-82903011 | MS.gene067159:intron | 45.0% | |
| CAGAGAAGGAAAACCCAAAC+TGG | + | chr3.4:82901844-82901863 | MS.gene067159:CDS | 45.0% | |
| CAGCAATTGGAACAACCTCT+CGG | - | chr3.4:82902176-82902195 | None:intergenic | 45.0% | |
| CCCAAACTGGACCAAATTTG+GGG | + | chr3.4:82901857-82901876 | MS.gene067159:CDS | 45.0% | |
| CCCCAAATTTGGTCCAGTTT+GGG | - | chr3.4:82901860-82901879 | None:intergenic | 45.0% | |
| CGATGATGTATCAGAAGCCT+TGG | - | chr3.4:82901898-82901917 | None:intergenic | 45.0% | |
| CGTGGAATATCTCCCACATT+TGG | - | chr3.4:82901774-82901793 | None:intergenic | 45.0% | |
| CTCCTCTTTCCCAGCATAAA+GGG | - | chr3.4:82902558-82902577 | None:intergenic | 45.0% | |
| CTGGGAAAGAGGAGTAATGT+TGG | + | chr3.4:82902564-82902583 | MS.gene067159:intron | 45.0% | |
| GATGTATCAGAAGCCTTGGT+TGG | - | chr3.4:82901894-82901913 | None:intergenic | 45.0% | |
| GCACGCAATGTTGTATGGAT+CGG | - | chr3.4:82902496-82902515 | None:intergenic | 45.0% | |
| GGGTTAAGTCCAAAGGGTTA+TGG | - | chr3.4:82901525-82901544 | None:intergenic | 45.0% | |
| GTGCTTCATAGATGGCAATG+TGG | - | chr3.4:82902939-82902958 | None:intergenic | 45.0% | |
| TACAGGCTACAGTACAACGT+TGG | - | chr3.4:82902781-82902800 | None:intergenic | 45.0% | |
| TAGGAACCAGTAGACTCCAT+AGG | - | chr3.4:82902593-82902612 | None:intergenic | 45.0% | |
| TCTTTCCCAGCATAAAGGGA+GGG | - | chr3.4:82902554-82902573 | None:intergenic | 45.0% | |
| TTATAACTGGGAGCAGACTC+TGG | - | chr3.4:82902744-82902763 | None:intergenic | 45.0% | |
| ! | CCCACATTTGGTAGCAAATG+AGG | - | chr3.4:82901762-82901781 | None:intergenic | 45.0% |
| ! | GCCTCATTTGCTACCAAATG+TGG | + | chr3.4:82901758-82901777 | MS.gene067159:intron | 45.0% |
| ! | GGAGTAATGTTGGTGTCCTA+TGG | + | chr3.4:82902574-82902593 | MS.gene067159:intron | 45.0% |
| ! | TGGGTTTTCCTTCTCTGCTT+CGG | - | chr3.4:82901841-82901860 | None:intergenic | 45.0% |
| !! | AATTTTGGCCGAAGCAGAGA+AGG | + | chr3.4:82901830-82901849 | MS.gene067159:CDS | 45.0% |
| AACCCTATACGTCGACCAAG+TGG | - | chr3.4:82901607-82901626 | None:intergenic | 50.0% | |
| AGCACGAGGGTTAAGTCCAA+AGG | - | chr3.4:82901532-82901551 | None:intergenic | 50.0% | |
| ATCTTGGGTGGGCGAATTGA+TGG | + | chr3.4:82903003-82903022 | MS.gene067159:intron | 50.0% | |
| ATTTCCAGTCACAGCGTAGC+AGG | + | chr3.4:82903407-82903426 | MS.gene067159:intron | 50.0% | |
| CTCCCTTTATGCTGGGAAAG+AGG | + | chr3.4:82902553-82902572 | MS.gene067159:intron | 50.0% | |
| CTCTTTCCCAGCATAAAGGG+AGG | - | chr3.4:82902555-82902574 | None:intergenic | 50.0% | |
| CTTTCCCAGCATAAAGGGAG+GGG | - | chr3.4:82902553-82902572 | None:intergenic | 50.0% | |
| GACCACTTGGTCGACGTATA+GGG | + | chr3.4:82901602-82901621 | MS.gene067159:intron | 50.0% | |
| GCACGAGGGTTAAGTCCAAA+GGG | - | chr3.4:82901531-82901550 | None:intergenic | 50.0% | |
| GGAATATAAGATCGCACCGC+CGG | + | chr3.4:82901179-82901198 | MS.gene067159:CDS | 50.0% | |
| GGCGGTGCGATCTTATATTC+CGG | - | chr3.4:82901180-82901199 | None:intergenic | 50.0% | |
| TCTTGGGTGGGCGAATTGAT+GGG | + | chr3.4:82903004-82903023 | MS.gene067159:intron | 50.0% | |
| TGACCACTTGGTCGACGTAT+AGG | + | chr3.4:82901601-82901620 | MS.gene067159:intron | 50.0% | |
| TGGTGTCCTATGGAGTCTAC+TGG | + | chr3.4:82902584-82902603 | MS.gene067159:intron | 50.0% | |
| TGTACTGTAGCCTGTAGGAG+AGG | + | chr3.4:82902785-82902804 | MS.gene067159:intron | 50.0% | |
| TTTCCAGTCACAGCGTAGCA+GGG | + | chr3.4:82903408-82903427 | MS.gene067159:intron | 50.0% | |
| ACTGGAAGAGCCTCTCCTAC+AGG | - | chr3.4:82902798-82902817 | None:intergenic | 55.0% | |
| CGGATATCCAGACCAGCAAC+TGG | + | chr3.4:82903102-82903121 | MS.gene067159:intron | 55.0% | |
| TCCAAAGGGTTATGGCGCGA+GGG | - | chr3.4:82901517-82901536 | None:intergenic | 55.0% | |
| TGGCGTCCGTGCTTCATAGA+TGG | - | chr3.4:82902947-82902966 | None:intergenic | 55.0% | |
| TTTCCCTGCTACGCTGTGAC+TGG | - | chr3.4:82903414-82903433 | None:intergenic | 55.0% | |
| CAACCTCTCGGCTGAGTCCA+TGG | - | chr3.4:82902164-82902183 | None:intergenic | 60.0% | |
| CCAAAGGGTTATGGCGCGAG+GGG | - | chr3.4:82901516-82901535 | None:intergenic | 60.0% | |
| GCCACCCCTCCCTTTATGCT+GGG | + | chr3.4:82902546-82902565 | MS.gene067159:intron | 60.0% | |
| GGGAGCAGACTCTGGATGAG+AGG | - | chr3.4:82902736-82902755 | None:intergenic | 60.0% | |
| GTCCAAAGGGTTATGGCGCG+AGG | - | chr3.4:82901518-82901537 | None:intergenic | 60.0% | |
| TAGCCATGGACTCAGCCGAG+AGG | + | chr3.4:82902158-82902177 | MS.gene067159:CDS | 60.0% | |
| TCCCAGCATAAAGGGAGGGG+TGG | - | chr3.4:82902550-82902569 | None:intergenic | 60.0% | |
| CCCCTCGCGCCATAACCCTT+TGG | + | chr3.4:82901513-82901532 | MS.gene067159:intron | 65.0% | |
| GGCCACCCCTCCCTTTATGC+TGG | + | chr3.4:82902545-82902564 | MS.gene067159:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 82901148 | 82903627 | 82901148 | ID=MS.gene067159 |
| chr3.4 | mRNA | 82901148 | 82903627 | 82901148 | ID=MS.gene067159.t1;Parent=MS.gene067159 |
| chr3.4 | exon | 82901148 | 82901200 | 82901148 | ID=MS.gene067159.t1.exon1;Parent=MS.gene067159.t1 |
| chr3.4 | CDS | 82901148 | 82901200 | 82901148 | ID=cds.MS.gene067159.t1;Parent=MS.gene067159.t1 |
| chr3.4 | exon | 82901759 | 82901919 | 82901759 | ID=MS.gene067159.t1.exon2;Parent=MS.gene067159.t1 |
| chr3.4 | CDS | 82901759 | 82901919 | 82901759 | ID=cds.MS.gene067159.t1;Parent=MS.gene067159.t1 |
| chr3.4 | exon | 82902137 | 82902227 | 82902137 | ID=MS.gene067159.t1.exon3;Parent=MS.gene067159.t1 |
| chr3.4 | CDS | 82902137 | 82902227 | 82902137 | ID=cds.MS.gene067159.t1;Parent=MS.gene067159.t1 |
| chr3.4 | exon | 82903493 | 82903627 | 82903493 | ID=MS.gene067159.t1.exon4;Parent=MS.gene067159.t1 |
| chr3.4 | CDS | 82903493 | 82903627 | 82903493 | ID=cds.MS.gene067159.t1;Parent=MS.gene067159.t1 |
| Gene Sequence |
| Protein sequence |
