AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051748


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051748.t1 MTR_7g053450 99.539 217 1 0 1 217 1 217 6.34e-160 441
MS.gene051748.t1 MTR_8g012330 87.907 215 26 0 3 217 74 288 8.68e-132 372
MS.gene051748.t1 MTR_8g012325 91.244 217 17 1 1 217 1 215 2.81e-126 355
MS.gene051748.t1 MTR_4g016670 88.021 192 23 0 26 217 26 217 2.24e-123 348
MS.gene051748.t1 MTR_4g016663 75.904 83 19 1 136 217 5 87 2.25e-37 125
MS.gene051748.t1 MTR_4g016620 70.690 58 17 0 136 193 21 78 5.40e-22 86.7
MS.gene051748.t1 MTR_4g016610 59.524 84 18 1 134 217 1042 1109 1.98e-21 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051748.t1 AT5G59240 85.854 205 20 1 1 205 1 196 3.43e-128 360
MS.gene051748.t1 AT5G20290 81.982 222 35 1 1 217 1 222 2.00e-111 318

Find 51 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCTGCAGAATCCTTCT+TGG 0.271014 7.3:-50465300 None:intergenic
CACGCCCTGGTCAATGTGGC+AGG 0.380048 7.3:+50465978 MS.gene051748:CDS
GGTCAATGTGGCAGGGCTGA+TGG 0.387861 7.3:+50465986 MS.gene051748:CDS
TTGAGCAGCGTCAGAAAGAT+AGG 0.420260 7.3:+50465894 MS.gene051748:CDS
CTAGACAGCTTAGTGTTGGC+TGG 0.421456 7.3:-50465008 None:intergenic
GTCAGGAGAATCCGTGTTAG+AGG 0.433718 7.3:+50465041 MS.gene051748:CDS
GTCAATGTGGCAGGGCTGAT+GGG 0.439498 7.3:+50465987 MS.gene051748:CDS
TCCAATAGGTACATTCTTGA+AGG 0.448248 7.3:+50466085 MS.gene051748:intron
CAGTGGTATCTTCAGCACTA+TGG 0.456331 7.3:+50465245 MS.gene051748:CDS
ACGAACAAGCTCATTGTTTG+AGG 0.460749 7.3:-50465168 None:intergenic
ACAGCTTAGTGTTGGCTGGC+TGG 0.467973 7.3:-50465004 None:intergenic
TCAGCCCTGCCACATTGACC+AGG 0.474891 7.3:-50465983 None:intergenic
GCCTGCATTTCATCACGCCC+TGG 0.479375 7.3:+50465965 MS.gene051748:CDS
TGTCTAGCAACAAGACAGTC+AGG 0.484105 7.3:+50465024 MS.gene051748:CDS
CAGCACTATGGTGTTGAAGT+TGG 0.484909 7.3:+50465257 MS.gene051748:CDS
CATTCTTGAAGGTAAGGAGT+TGG 0.488645 7.3:+50466096 MS.gene051748:CDS
TAGGTACATTCTTGAAGGTA+AGG 0.500539 7.3:+50466090 MS.gene051748:intron
TGAAGATACCACTGCTTGAA+TGG 0.502756 7.3:-50465236 None:intergenic
GCTTGTTCGTACTCAGACTC+TGG 0.506342 7.3:+50465181 MS.gene051748:CDS
ATTGAAGAGCAGTTCGGCGG+TGG 0.507577 7.3:+50465932 MS.gene051748:CDS
GTTGCTAGACAGCTTAGTGT+TGG 0.512620 7.3:-50465012 None:intergenic
TTAGAGGTGGCAATGTGAAA+TGG 0.513214 7.3:+50465057 MS.gene051748:CDS
ATGCACAAGAGGCGTGCCAC+TGG 0.523144 7.3:+50463791 MS.gene051748:CDS
GAAATGGAGAGCTCTTAGAT+TGG 0.523645 7.3:+50465073 MS.gene051748:CDS
ACCAGGGCGTGATGAAATGC+AGG 0.526557 7.3:-50465966 None:intergenic
CTGGTGGCAAGAAGAAGAGC+TGG 0.534252 7.3:+50463810 MS.gene051748:CDS
TCCCACATTGAAGAGCAGTT+CGG 0.538409 7.3:+50465926 MS.gene051748:CDS
TGAATGGTGCAGCATCAACT+TGG 0.539497 7.3:-50465220 None:intergenic
GCTCTTCTTCTTGCCACCAG+TGG 0.539638 7.3:-50463807 None:intergenic
AAAGAAAACAGCAGCCAAGA+AGG 0.547923 7.3:+50465286 MS.gene051748:CDS
CGCCGAACTGCTCTTCAATG+TGG 0.556342 7.3:-50465928 None:intergenic
TGCAGCATCAACTTGGACAA+TGG 0.565135 7.3:-50465213 None:intergenic
CACAAGAGGCGTGCCACTGG+TGG 0.574033 7.3:+50463794 MS.gene051748:CDS
GCCGAACTGCTCTTCAATGT+GGG 0.578038 7.3:-50465927 None:intergenic
GGTTTGTATAGGTACGAGCT+TGG 0.590987 7.3:+50464978 MS.gene051748:intron
ACGCCCTGGTCAATGTGGCA+GGG 0.593939 7.3:+50465979 MS.gene051748:CDS
CAAGACTCGTCTTCTCGATG+TGG 0.596566 7.3:+50465136 MS.gene051748:CDS
TCACATTGCCACCTCTAACA+CGG 0.599964 7.3:-50465052 None:intergenic
AAATTTCTCGTGGGGTAGTG+AGG 0.601685 7.3:+50465103 MS.gene051748:CDS
CAAGAGATTCTATGCACAAG+AGG 0.601927 7.3:+50463780 MS.gene051748:CDS
TGGACACTGGAAATTTCTCG+TGG 0.606783 7.3:+50465093 MS.gene051748:CDS
GGACACTGGAAATTTCTCGT+GGG 0.613954 7.3:+50465094 MS.gene051748:CDS
CACATTGAAGAGCAGTTCGG+CGG 0.615554 7.3:+50465929 MS.gene051748:CDS
GACACTGGAAATTTCTCGTG+GGG 0.616779 7.3:+50465095 MS.gene051748:CDS
AGCCAAGAAGGATTCTGCAG+AGG 0.633472 7.3:+50465298 MS.gene051748:CDS
AGGAGAATCCGTGTTAGAGG+TGG 0.633660 7.3:+50465044 MS.gene051748:CDS
CAGCCCTGCCACATTGACCA+GGG 0.641454 7.3:-50465982 None:intergenic
ACTATGGTGTTGAAGTTGGT+AGG 0.642583 7.3:+50465261 MS.gene051748:CDS
ATGCTGCACCATTCAAGCAG+TGG 0.644432 7.3:+50465228 MS.gene051748:CDS
TCATCACGCCCTGGTCAATG+TGG 0.654082 7.3:+50465974 MS.gene051748:CDS
AGAGCTCTTAGATTGGACAC+TGG 0.691283 7.3:+50465080 MS.gene051748:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAAAATTTCAATTTTTT+TGG + chr7.3:50464884-50464903 MS.gene051748:intron 10.0%
!!! TGAAATTTTAATCTAATTAA+AGG - chr7.3:50464877-50464896 None:intergenic 10.0%
!! ATATATGTTTATATAAAGAG+TGG - chr7.3:50465700-50465719 None:intergenic 15.0%
!! ATATATTATGTGTTTCTTAA+TGG + chr7.3:50465522-50465541 MS.gene051748:intron 15.0%
!! TATATGTTTATATAAAGAGT+GGG - chr7.3:50465699-50465718 None:intergenic 15.0%
!!! ATTGGTTTATTAAATAGAAT+GGG - chr7.3:50463473-50463492 None:intergenic 15.0%
!!! CTTTAAGTTATCATTTTAAT+TGG + chr7.3:50465619-50465638 MS.gene051748:intron 15.0%
!!! TAAATTTAAGATGTTTTTGT+CGG + chr7.3:50464956-50464975 MS.gene051748:intron 15.0%
!!! TATTGGTTTATTAAATAGAA+TGG - chr7.3:50463474-50463493 None:intergenic 15.0%
!!! TTATCATTTTAATTGGATAT+TGG + chr7.3:50465626-50465645 MS.gene051748:intron 15.0%
!! AAAATTCAAATAGAACAATG+TGG - chr7.3:50463890-50463909 None:intergenic 20.0%
!! AAACATATATTTGCCATTAA+GGG + chr7.3:50465710-50465729 MS.gene051748:intron 20.0%
!! AAATTTCAAAAACAGATTAG+GGG - chr7.3:50464489-50464508 None:intergenic 20.0%
!! AACATAGGTTATTCATATAA+AGG - chr7.3:50465579-50465598 None:intergenic 20.0%
!! AAGAAATTACAGAAAAAGAA+GGG + chr7.3:50466130-50466149 MS.gene051748:CDS 20.0%
!! ACATAGGTTATTCATATAAA+GGG - chr7.3:50465578-50465597 None:intergenic 20.0%
!! ATACTTTAAGCATATAATCT+AGG + chr7.3:50463403-50463422 MS.gene051748:intron 20.0%
!! GAAATTAATTAAAATCATCC+CGG - chr7.3:50463365-50463384 None:intergenic 20.0%
!! GAAATTTCAAAAACAGATTA+GGG - chr7.3:50464490-50464509 None:intergenic 20.0%
!! GAATATTGATCAAAATACAA+AGG + chr7.3:50464667-50464686 MS.gene051748:intron 20.0%
!! TAAACATATATTTGCCATTA+AGG + chr7.3:50465709-50465728 MS.gene051748:intron 20.0%
!! TGAAATTTCAAAAACAGATT+AGG - chr7.3:50464491-50464510 None:intergenic 20.0%
!! TGATTATATAGAGAGAAAAA+GGG - chr7.3:50463856-50463875 None:intergenic 20.0%
!! TTAGTATTAATAATACTCAG+CGG - chr7.3:50464754-50464773 None:intergenic 20.0%
!! TTGATTATATAGAGAGAAAA+AGG - chr7.3:50463857-50463876 None:intergenic 20.0%
!! TTGGTTTATTAAATAGAATG+GGG - chr7.3:50463472-50463491 None:intergenic 20.0%
!!! AAATTTAAGATGTTTTTGTC+GGG + chr7.3:50464957-50464976 MS.gene051748:intron 20.0%
!!! AATTAACTTGTTCAGTATTA+AGG + chr7.3:50463968-50463987 MS.gene051748:intron 20.0%
!!! CATCATACTAATTTGTTTAT+AGG - chr7.3:50464801-50464820 None:intergenic 20.0%
!!! TATGTTTAGTTTACCATTAA+GGG + chr7.3:50465593-50465612 MS.gene051748:intron 20.0%
!!! TTATTTAAATTTCAAGTGTC+CGG + chr7.3:50463343-50463362 MS.gene051748:intron 20.0%
!!! TTTTTATAAAGTACCTTTAC+CGG + chr7.3:50464322-50464341 MS.gene051748:intron 20.0%
! AAATCCTAATCACATTTAAC+AGG - chr7.3:50464844-50464863 None:intergenic 25.0%
! AGACATAATTCGATAACAAA+TGG + chr7.3:50463656-50463675 MS.gene051748:intron 25.0%
! ATTGTGTTGAAATTGTAAGT+AGG + chr7.3:50465474-50465493 MS.gene051748:intron 25.0%
! CTTAATGGTAAACTAAACAT+AGG - chr7.3:50465594-50465613 None:intergenic 25.0%
! CTTACAATTTCAACACAATA+TGG - chr7.3:50465473-50465492 None:intergenic 25.0%
! GAAGAAATTACAGAAAAAGA+AGG + chr7.3:50466129-50466148 MS.gene051748:CDS 25.0%
! GTTAACACTAAAAACAAAGA+TGG - chr7.3:50466045-50466064 None:intergenic 25.0%
! TAATAAGTAGTAGATCAACA+TGG + chr7.3:50463497-50463516 MS.gene051748:intron 25.0%
! TATAAGTTGTGAATGCAATA+CGG + chr7.3:50463535-50463554 MS.gene051748:intron 25.0%
! TATTGATCAAAATACAAAGG+AGG + chr7.3:50464670-50464689 MS.gene051748:intron 25.0%
! TATTTGCATGATAGATCAAA+TGG + chr7.3:50463596-50463615 MS.gene051748:intron 25.0%
! TCTACTACTTATTACTCTAT+TGG - chr7.3:50463491-50463510 None:intergenic 25.0%
! TGAGAACTTATGAAATTAAG+CGG + chr7.3:50464133-50464152 MS.gene051748:intron 25.0%
!! AAGATTTATGAATTGATTCC+TGG + chr7.3:50463232-50463251 MS.gene051748:intron 25.0%
!! AGCTTATGAAGATACAATTT+TGG - chr7.3:50464300-50464319 None:intergenic 25.0%
!! ATATTTTGCAAGACTGTTTA+GGG - chr7.3:50464427-50464446 None:intergenic 25.0%
!! ATGTTTAGTTTACCATTAAG+GGG + chr7.3:50465594-50465613 MS.gene051748:intron 25.0%
!! CTATGTTTAGTTTACCATTA+AGG + chr7.3:50465592-50465611 MS.gene051748:intron 25.0%
!! CTTTTGTCATTATTCATTTC+TGG + chr7.3:50464577-50464596 MS.gene051748:intron 25.0%
!! GTTTTGTATGAACTATTTGT+TGG + chr7.3:50463723-50463742 MS.gene051748:intron 25.0%
!! TATATTTTGCAAGACTGTTT+AGG - chr7.3:50464428-50464447 None:intergenic 25.0%
!! TATTAAATAGAATGGGGTTT+TGG - chr7.3:50463466-50463485 None:intergenic 25.0%
!! TATTTAAATTTCAAGTGTCC+GGG + chr7.3:50463344-50463363 MS.gene051748:intron 25.0%
!! TTTTTCTTGTGATTTCCAAT+AGG + chr7.3:50466071-50466090 MS.gene051748:intron 25.0%
!!! CTAGGCTTATTGTTTTTTAT+TGG + chr7.3:50465499-50465518 MS.gene051748:intron 25.0%
!!! TTATGAAAAGTGTCAAAAGT+TGG + chr7.3:50464164-50464183 MS.gene051748:intron 25.0%
!!! TTCATTTCTGGAATTATATG+TGG + chr7.3:50464589-50464608 MS.gene051748:intron 25.0%
!!! TTTATAGGAACTTCTAAGAT+AGG - chr7.3:50464786-50464805 None:intergenic 25.0%
!!! TTTTAGCTTTTGCTTGATTT+AGG + chr7.3:50463310-50463329 MS.gene051748:intron 25.0%
AAAAACTAGCCAATCCAAAT+GGG - chr7.3:50464211-50464230 None:intergenic 30.0%
AAAAAGCTGTTTAACCAAAC+AGG - chr7.3:50463995-50464014 None:intergenic 30.0%
AAAAGCTGTTTAACCAAACA+GGG - chr7.3:50463994-50464013 None:intergenic 30.0%
AAACAAAGATGGAGTTTAAG+CGG - chr7.3:50466034-50466053 None:intergenic 30.0%
ATGCAAATAGTGGTTGAAAT+AGG - chr7.3:50463585-50463604 None:intergenic 30.0%
CTTTCCTGTTAAATGTGATT+AGG + chr7.3:50464837-50464856 MS.gene051748:intron 30.0%
GCACTTAATTATTCAAATGC+TGG + chr7.3:50463910-50463929 MS.gene051748:intron 30.0%
TAGGTTATTCATATAAAGGG+TGG - chr7.3:50465575-50465594 None:intergenic 30.0%
TATAATTCATAAGCCGGTAA+AGG - chr7.3:50464338-50464357 None:intergenic 30.0%
TCAAATAATCCAATCCAAAC+AGG + chr7.3:50464463-50464482 MS.gene051748:intron 30.0%
TCACATTTAACAGGAAAGAA+CGG - chr7.3:50464835-50464854 None:intergenic 30.0%
TCTATGTCATCTATTGTGTA+TGG + chr7.3:50463267-50463286 MS.gene051748:intron 30.0%
TGCAAATAGTGGTTGAAATA+GGG - chr7.3:50463584-50463603 None:intergenic 30.0%
TGCTTGATTTAGGCTATATT+AGG + chr7.3:50463320-50463339 MS.gene051748:intron 30.0%
TGTGTGTATAATTCATAAGC+CGG - chr7.3:50464344-50464363 None:intergenic 30.0%
TTGATCTATCATGCAAATAG+TGG - chr7.3:50463595-50463614 None:intergenic 30.0%
! ATTACGAACTTTTGACAACA+TGG - chr7.3:50465672-50465691 None:intergenic 30.0%
! GGTTTTCATAAGTTCATCTA+GGG + chr7.3:50464185-50464204 MS.gene051748:intron 30.0%
! TAACTTAAAGTACCCCTTAA+TGG - chr7.3:50465609-50465628 None:intergenic 30.0%
! TATTTTGCAAGACTGTTTAG+GGG - chr7.3:50464426-50464445 None:intergenic 30.0%
! TGATAACAAAGTACCCTTAA+TGG - chr7.3:50465726-50465745 None:intergenic 30.0%
! TGGTTTTCATAAGTTCATCT+AGG + chr7.3:50464184-50464203 MS.gene051748:intron 30.0%
!!! ATGTTTTGATTTGAACATCC+AGG + chr7.3:50465817-50465836 MS.gene051748:intron 30.0%
AAAGTAAGAAAACCATCCAC+AGG - chr7.3:50465394-50465413 None:intergenic 35.0%
AACTCAAAAATAAGCCAAGC+CGG + chr7.3:50464396-50464415 MS.gene051748:intron 35.0%
ACCTTCAAGAATGTACCTAT+TGG - chr7.3:50466089-50466108 None:intergenic 35.0%
AGATTTATCATCTTCCCTCT+AGG - chr7.3:50464700-50464719 None:intergenic 35.0%
ATATATGCCTTCAGGTATAG+TGG + chr7.3:50465368-50465387 MS.gene051748:intron 35.0%
ATCAACATGGTTTATGAAGC+TGG + chr7.3:50463510-50463529 MS.gene051748:intron 35.0%
CAAAAACTAGCCAATCCAAA+TGG - chr7.3:50464212-50464231 None:intergenic 35.0%
CATAGACATATGCAAAAACC+AGG - chr7.3:50463253-50463272 None:intergenic 35.0%
TAGGTACATTCTTGAAGGTA+AGG + chr7.3:50466090-50466109 MS.gene051748:intron 35.0%
TCCAATAGGTACATTCTTGA+AGG + chr7.3:50466085-50466104 MS.gene051748:intron 35.0%
TGAAATTGTAAGTAGGTGCT+AGG + chr7.3:50465481-50465500 MS.gene051748:intron 35.0%
TTAGCTAATGCTTGTGAAGT+AGG - chr7.3:50463629-50463648 None:intergenic 35.0%
! TATTTGTTGGAGTTCTCATG+TGG + chr7.3:50463736-50463755 MS.gene051748:intron 35.0%
! TCTTCATCTCTGTCTGTTTT+TGG + chr7.3:50463690-50463709 MS.gene051748:intron 35.0%
!! TGTTTTTGTCGGGTTTGTAT+AGG + chr7.3:50464967-50464986 MS.gene051748:intron 35.0%
!!! TTTTGATTTGAACATCCAGG+AGG + chr7.3:50465820-50465839 MS.gene051748:intron 35.0%
AAAGAAAACAGCAGCCAAGA+AGG + chr7.3:50465286-50465305 MS.gene051748:CDS 40.0%
ACGAACAAGCTCATTGTTTG+AGG - chr7.3:50465171-50465190 None:intergenic 40.0%
AGAACTAATTCAGCTCATCC+AGG - chr7.3:50464553-50464572 None:intergenic 40.0%
CAAGAGATTCTATGCACAAG+AGG + chr7.3:50463780-50463799 MS.gene051748:CDS 40.0%
CATTCTTGAAGGTAAGGAGT+TGG + chr7.3:50466096-50466115 MS.gene051748:CDS 40.0%
GAAATGGAGAGCTCTTAGAT+TGG + chr7.3:50465073-50465092 MS.gene051748:CDS 40.0%
GAACTAATTCAGCTCATCCA+GGG - chr7.3:50464552-50464571 None:intergenic 40.0%
GCTGTATGATATATGCCTTC+AGG + chr7.3:50465360-50465379 MS.gene051748:intron 40.0%
TATCATCACCAAAAGCGAGT+CGG - chr7.3:50464915-50464934 None:intergenic 40.0%
TGAAGATACCACTGCTTGAA+TGG - chr7.3:50465239-50465258 None:intergenic 40.0%
TTAGAGGTGGCAATGTGAAA+TGG + chr7.3:50465057-50465076 MS.gene051748:CDS 40.0%
TTCAGTATTAAGGCCCTGTT+TGG + chr7.3:50463978-50463997 MS.gene051748:intron 40.0%
! ACAAAGGAGGTATACCTAGA+GGG + chr7.3:50464683-50464702 MS.gene051748:intron 40.0%
! ACTATGGTGTTGAAGTTGGT+AGG + chr7.3:50465261-50465280 MS.gene051748:CDS 40.0%
! AGGGTACTTTGTTATCACTG+TGG + chr7.3:50465729-50465748 MS.gene051748:intron 40.0%
! GATGAGCTGAATTAGTTCTC+TGG + chr7.3:50464554-50464573 MS.gene051748:intron 40.0%
! TACAAAGGAGGTATACCTAG+AGG + chr7.3:50464682-50464701 MS.gene051748:intron 40.0%
!! AAGCAAGTTGATGCTCTTTG+GGG + chr7.3:50463432-50463451 MS.gene051748:intron 40.0%
!! AGAAGCAAGTTGATGCTCTT+TGG + chr7.3:50463430-50463449 MS.gene051748:intron 40.0%
!! CATGTGGTTGTTTCTTGAAC+AGG + chr7.3:50463752-50463771 MS.gene051748:intron 40.0%
!! GAAGCAAGTTGATGCTCTTT+GGG + chr7.3:50463431-50463450 MS.gene051748:intron 40.0%
AAACAGATTAGGGGCCTGTT+TGG - chr7.3:50464480-50464499 None:intergenic 45.0%
AAATTTCTCGTGGGGTAGTG+AGG + chr7.3:50465103-50465122 MS.gene051748:CDS 45.0%
AGAGCTCTTAGATTGGACAC+TGG + chr7.3:50465080-50465099 MS.gene051748:CDS 45.0%
ATGGAGTTTAAGCGGAGACA+AGG - chr7.3:50466026-50466045 None:intergenic 45.0%
CAGTGGTATCTTCAGCACTA+TGG + chr7.3:50465245-50465264 MS.gene051748:CDS 45.0%
GACACTGGAAATTTCTCGTG+GGG + chr7.3:50465095-50465114 MS.gene051748:CDS 45.0%
GGACACTGGAAATTTCTCGT+GGG + chr7.3:50465094-50465113 MS.gene051748:CDS 45.0%
GGTTTGTATAGGTACGAGCT+TGG + chr7.3:50464978-50464997 MS.gene051748:intron 45.0%
GTTGCTAGACAGCTTAGTGT+TGG - chr7.3:50465015-50465034 None:intergenic 45.0%
GTTGTGAATGCAATACGGTC+TGG + chr7.3:50463540-50463559 MS.gene051748:intron 45.0%
TACCTCTGCAGAATCCTTCT+TGG - chr7.3:50465303-50465322 None:intergenic 45.0%
TCACATTGCCACCTCTAACA+CGG - chr7.3:50465055-50465074 None:intergenic 45.0%
TCCCACATTGAAGAGCAGTT+CGG + chr7.3:50465926-50465945 MS.gene051748:CDS 45.0%
TGAATGGTGCAGCATCAACT+TGG - chr7.3:50465223-50465242 None:intergenic 45.0%
TGCAGCATCAACTTGGACAA+TGG - chr7.3:50465216-50465235 None:intergenic 45.0%
TGGACACTGGAAATTTCTCG+TGG + chr7.3:50465093-50465112 MS.gene051748:CDS 45.0%
TGTCTAGCAACAAGACAGTC+AGG + chr7.3:50465024-50465043 MS.gene051748:CDS 45.0%
TTGAGCAGCGTCAGAAAGAT+AGG + chr7.3:50465894-50465913 MS.gene051748:CDS 45.0%
! AAGTTCATCTAGGGCCCATT+TGG + chr7.3:50464194-50464213 MS.gene051748:intron 45.0%
! CAGCACTATGGTGTTGAAGT+TGG + chr7.3:50465257-50465276 MS.gene051748:CDS 45.0%
!! TTAAATTTAAATAATTAACT+AGG - chr7.3:50464945-50464964 None:intergenic 5.0%
AAGACTGTTTAGGGGCAGTC+CGG - chr7.3:50464418-50464437 None:intergenic 50.0%
AGCCAAGAAGGATTCTGCAG+AGG + chr7.3:50465298-50465317 MS.gene051748:CDS 50.0%
AGGAGAATCCGTGTTAGAGG+TGG + chr7.3:50465044-50465063 MS.gene051748:CDS 50.0%
ATGCTGCACCATTCAAGCAG+TGG + chr7.3:50465228-50465247 MS.gene051748:CDS 50.0%
CAAGACTCGTCTTCTCGATG+TGG + chr7.3:50465136-50465155 MS.gene051748:CDS 50.0%
CACATTGAAGAGCAGTTCGG+CGG + chr7.3:50465929-50465948 MS.gene051748:CDS 50.0%
CTTATTCTCACTGTGCTCCC+TGG + chr7.3:50464532-50464551 MS.gene051748:intron 50.0%
GATTAGGGGCCTGTTTGGAT+TGG - chr7.3:50464475-50464494 None:intergenic 50.0%
GCAATACGGTCTGGCCTAAT+GGG + chr7.3:50463549-50463568 MS.gene051748:intron 50.0%
GCCGAACTGCTCTTCAATGT+GGG - chr7.3:50465930-50465949 None:intergenic 50.0%
GCTTGTTCGTACTCAGACTC+TGG + chr7.3:50465181-50465200 MS.gene051748:CDS 50.0%
GTCAGGAGAATCCGTGTTAG+AGG + chr7.3:50465041-50465060 MS.gene051748:CDS 50.0%
TAGGGCCATAAGCTCCCATT+AGG - chr7.3:50463566-50463585 None:intergenic 50.0%
TCTGGCCTAATGGGAGCTTA+TGG + chr7.3:50463558-50463577 MS.gene051748:intron 50.0%
TGCAATACGGTCTGGCCTAA+TGG + chr7.3:50463548-50463567 MS.gene051748:intron 50.0%
! CATCTAGGGCCCATTTGGAT+TGG + chr7.3:50464199-50464218 MS.gene051748:intron 50.0%
! GCTCAAGTTTTCTCTGCACG+TGG - chr7.3:50465880-50465899 None:intergenic 50.0%
!! CTAGACAGCTTAGTGTTGGC+TGG - chr7.3:50465011-50465030 None:intergenic 50.0%
!! GTTGATGCTCTTTGGGGCTT+AGG + chr7.3:50463438-50463457 MS.gene051748:intron 50.0%
ACCAGGGCGTGATGAAATGC+AGG - chr7.3:50465969-50465988 None:intergenic 55.0%
ATTGAAGAGCAGTTCGGCGG+TGG + chr7.3:50465932-50465951 MS.gene051748:CDS 55.0%
CAGCAACAACTTCAGCCTCC+TGG - chr7.3:50465838-50465857 None:intergenic 55.0%
CAGGTATAGTGGCCTGTGGA+TGG + chr7.3:50465379-50465398 MS.gene051748:intron 55.0%
CCACAGGCCACTATACCTGA+AGG - chr7.3:50465378-50465397 None:intergenic 55.0%
CCTTCAGGTATAGTGGCCTG+TGG + chr7.3:50465375-50465394 MS.gene051748:intron 55.0%
CGCCGAACTGCTCTTCAATG+TGG - chr7.3:50465931-50465950 None:intergenic 55.0%
CTGGTGGCAAGAAGAAGAGC+TGG + chr7.3:50463810-50463829 MS.gene051748:CDS 55.0%
GCTCTTCTTCTTGCCACCAG+TGG - chr7.3:50463810-50463829 None:intergenic 55.0%
GTCAATGTGGCAGGGCTGAT+GGG + chr7.3:50465987-50466006 MS.gene051748:CDS 55.0%
TCATCACGCCCTGGTCAATG+TGG + chr7.3:50465974-50465993 MS.gene051748:CDS 55.0%
!! ACAGCTTAGTGTTGGCTGGC+TGG - chr7.3:50465007-50465026 None:intergenic 55.0%
!!! TGGATGTGCCGACTCGCTTT+TGG + chr7.3:50464904-50464923 MS.gene051748:intron 55.0%
ACGCCCTGGTCAATGTGGCA+GGG + chr7.3:50465979-50465998 MS.gene051748:CDS 60.0%
CAGCCCTGCCACATTGACCA+GGG - chr7.3:50465985-50466004 None:intergenic 60.0%
GCCTGCATTTCATCACGCCC+TGG + chr7.3:50465965-50465984 MS.gene051748:CDS 60.0%
GGTCAATGTGGCAGGGCTGA+TGG + chr7.3:50465986-50466005 MS.gene051748:CDS 60.0%
TCAGCCCTGCCACATTGACC+AGG - chr7.3:50465986-50466005 None:intergenic 60.0%
TGTTTAGGGGCAGTCCGGCT+TGG - chr7.3:50464413-50464432 None:intergenic 60.0%
! ATGCACAAGAGGCGTGCCAC+TGG + chr7.3:50463791-50463810 MS.gene051748:CDS 60.0%
CACGCCCTGGTCAATGTGGC+AGG + chr7.3:50465978-50465997 MS.gene051748:CDS 65.0%
! CACAAGAGGCGTGCCACTGG+TGG + chr7.3:50463794-50463813 MS.gene051748:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 50463226 50466168 50463226 ID=MS.gene051748
chr7.3 mRNA 50463226 50466168 50463226 ID=MS.gene051748.t1;Parent=MS.gene051748
chr7.3 exon 50463226 50463229 50463226 ID=MS.gene051748.t1.exon1;Parent=MS.gene051748.t1
chr7.3 CDS 50463226 50463229 50463226 ID=cds.MS.gene051748.t1;Parent=MS.gene051748.t1
chr7.3 exon 50463774 50463846 50463774 ID=MS.gene051748.t1.exon2;Parent=MS.gene051748.t1
chr7.3 CDS 50463774 50463846 50463774 ID=cds.MS.gene051748.t1;Parent=MS.gene051748.t1
chr7.3 exon 50464989 50465319 50464989 ID=MS.gene051748.t1.exon3;Parent=MS.gene051748.t1
chr7.3 CDS 50464989 50465319 50464989 ID=cds.MS.gene051748.t1;Parent=MS.gene051748.t1
chr7.3 exon 50465839 50466008 50465839 ID=MS.gene051748.t1.exon4;Parent=MS.gene051748.t1
chr7.3 CDS 50465839 50466008 50465839 ID=cds.MS.gene051748.t1;Parent=MS.gene051748.t1
chr7.3 exon 50466093 50466168 50466093 ID=MS.gene051748.t1.exon5;Parent=MS.gene051748.t1
chr7.3 CDS 50466093 50466168 50466093 ID=cds.MS.gene051748.t1;Parent=MS.gene051748.t1
Gene Sequence

>MS.gene051748

ATGGGTAAGATTTATGAATTGATTCCTGGTTTTTGCATATGTCTATGTCATCTATTGTGTATGGAAACAAACTGAAAGTGTAGATTTTAGCTTTTGCTTGATTTAGGCTATATTAGGTTATTTAAATTTCAAGTGTCCGGGATGATTTTAATTAATTTCTGTTAGAGCTAATTATATATACTTTAAGCATATAATCTAGGTTAGAGAAGCAAGTTGATGCTCTTTGGGGCTTAGGCTCCAAAACCCCATTCTATTTAATAAACCAATAGAGTAATAAGTAGTAGATCAACATGGTTTATGAAGCTGGTATATAAGTTGTGAATGCAATACGGTCTGGCCTAATGGGAGCTTATGGCCCTATTTCAACCACTATTTGCATGATAGATCAAATGGTTATTATCCTACTTCACAAGCATTAGCTAATTGATCAAGACATAATTCGATAACAAATGGTTTCATCTTCATCTTCATCTCTGTCTGTTTTTGGATCTATCATTGTTTTGTATGAACTATTTGTTGGAGTTCTCATGTGGTTGTTTCTTGAACAGGTATTTCAAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGAGCTGGAGAAAGAAGCGAAAGTAATTCCCTTTTTCTCTCTATATAATCAAATGATCAGATCCACATTGTTCTATTTGAATTTTGCACTTAATTATTCAAATGCTGGATTTTAATTGTTGATTATTATACATTATAAATTTGAATTAACTTGTTCAGTATTAAGGCCCTGTTTGGTTAAACAGCTTTTTTGCACAAATACTGATCATGATAAGCACTTATGTATAAGCTTACATAAGCTATTTTTATACAACAAATTAACAATAACGTTAAATAGTTTTTGTGTAAGTTGTTTTCAAATGCTATCTGTGAGAACTTATGAAATTAAGCGGAAAAAAGCTTATGAAAAGTGTCAAAAGTTGGTTTTCATAAGTTCATCTAGGGCCCATTTGGATTGGCTAGTTTTTGAGCTTATTAAAAATAGCTTATGCAAATAAATAAGCTTTTTTTGTTGATTCATAACTTCTCACTGACCAAAATTGTATCTTCATAAGCTGTTTTTTATAAAGTACCTTTACCGGCTTATGAATTATACACACAAGCTTATTTATTTGCATATGCTCTTTTGTGTAAACTCAAAAATAAGCCAAGCCGGACTGCCCCTAAACAGTCTTGCAAAATATATGACAGCAAATAAGCTCAAATAATCCAATCCAAACAGGCCCCTAATCTGTTTTTGAAATTTCAAGTTTTAATGTGATTCATATTCTTATTCTCACTGTGCTCCCTGGATGAGCTGAATTAGTTCTCTGGCTTTTGTCATTATTCATTTCTGGAATTATATGTGGCATAGCATTCAATCATCATATTTAAATGATATATGAAGATTGTCGATTTTAAGATGAATATTGATCAAAATACAAAGGAGGTATACCTAGAGGGAAGATGATAAATCTTCTGTAATTAAGAAACAAAATGTAAACAGAGCCGCTGAGTATTATTAATACTAACATTGCTTTCCTATCTTAGAAGTTCCTATAAACAAATTAGTATGATGAATACAAGTTGCCGTTCTTTCCTGTTAAATGTGATTAGGATTTTCTCTTTGCACCTTTAATTAGATTAAAATTTCAATTTTTTTGGATGTGCCGACTCGCTTTTGGTGATGATATATTGATCCTAGTTAATTATTTAAATTTAAGATGTTTTTGTCGGGTTTGTATAGGTACGAGCTTGGTCGCCAGCCAGCCAACACTAAGCTGTCTAGCAACAAGACAGTCAGGAGAATCCGTGTTAGAGGTGGCAATGTGAAATGGAGAGCTCTTAGATTGGACACTGGAAATTTCTCGTGGGGTAGTGAGGCAGTGACTCGCAAGACTCGTCTTCTCGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTTCGTACTCAGACTCTGGTTAAGAGTGCCATTGTCCAAGTTGATGCTGCACCATTCAAGCAGTGGTATCTTCAGCACTATGGTGTTGAAGTTGGTAGGAAAAAGAAAACAGCAGCCAAGAAGGATTCTGCAGAGGTAATAGTTTTTGAAATTTTCATGTTATATATGTTTGTGTGCTGTATGATATATGCCTTCAGGTATAGTGGCCTGTGGATGGTTTTCTTACTTTGCATATCTTCAATTTTTAAATGACTGCGCTTTTTCAAATATATCTCTTTGAAAACTCCATATTGTGTTGAAATTGTAAGTAGGTGCTAGGCTTATTGTTTTTTATTGGATATATTATGTGTTTCTTAATGGCATGTTCTTAAAAGTTTATAATTTGTTCCACCCTTTATATGAATAACCTATGTTTAGTTTACCATTAAGGGGTACTTTAAGTTATCATTTTAATTGGATATTGGATATATTATGTTTCTTAATACCATGTTGTCAAAAGTTCGTAATTTGTCCCACTCTTTATATAAACATATATTTGCCATTAAGGGTACTTTGTTATCACTGTGGATTAAATTAGCTTGCACTACTGTGTTGTAGTTGACTCTAATCTCAAATCTGATGTAAATTTTCTGATGTTTTGATTTGAACATCCAGGAGGCTGAAGTTGTTGCTGAAGAAGTTAAGAAGAGTAACCACGTGCAGAGAAAACTTGAGCAGCGTCAGAAAGATAGGCAACTTGATTCCCACATTGAAGAGCAGTTCGGCGGTGGACGTTTGCTTGCCTGCATTTCATCACGCCCTGGTCAATGTGGCAGGGCTGATGGGTATGTATAACTCACCTTGTCTCCGCTTAAACTCCATCTTTGTTTTTAGTGTTAACTGTTCTTTTTTCTTGTGATTTCCAATAGGTACATTCTTGAAGGTAAGGAGTTGGAGTTTTACATGAAGAAATTACAGAAAAAGAAGGGAAAGAGTGCTGCTTAA

Protein sequence

>MS.gene051748.t1

MGISRDSMHKRRATGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEVGRKKKTAAKKDSAEEAEVVAEEVKKSNHVQRKLEQRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKSAA