AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058074


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058074.t1 MTR_5g007030 99.083 436 4 0 1 436 1 436 0.0 898
MS.gene058074.t1 MTR_5g007030 99.042 313 3 0 124 436 14 326 0.0 646
MS.gene058074.t1 MTR_3g092640 43.256 430 224 8 12 434 1 417 3.44e-120 357
MS.gene058074.t1 MTR_1g078030 43.230 421 198 8 17 435 9 390 3.06e-117 348
MS.gene058074.t1 MTR_4g005140 29.018 224 150 4 126 347 62 278 1.05e-31 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058074.t1 AT4G14500 66.591 440 136 6 1 436 1 433 0.0 598
MS.gene058074.t1 AT3G23080 65.197 431 131 6 9 436 5 419 0.0 561
MS.gene058074.t1 AT3G23080 64.604 404 124 6 36 436 1 388 0.0 515
MS.gene058074.t1 AT3G23080 64.604 404 124 6 36 436 1 388 0.0 515
MS.gene058074.t1 AT5G54170 45.561 428 212 6 23 434 6 428 4.53e-121 360
MS.gene058074.t1 AT1G64720 44.096 415 181 6 21 435 17 380 5.21e-121 357
MS.gene058074.t1 AT4G14500 61.290 279 101 4 1 274 1 277 3.31e-117 344
MS.gene058074.t1 AT3G13062 29.934 304 189 9 136 431 84 371 5.78e-36 137
MS.gene058074.t1 AT3G13062 31.250 304 185 10 136 431 84 371 1.11e-35 137
MS.gene058074.t1 AT3G13062 29.167 312 189 9 136 431 84 379 1.38e-34 133
MS.gene058074.t1 AT1G55960 31.727 249 156 6 128 369 75 316 2.59e-30 121
MS.gene058074.t1 AT1G55960 28.829 222 121 6 128 344 75 264 1.63e-18 87.4

Find 122 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTTTGTATTGCATATT+TGG 0.148571 5.1:-1681753 None:intergenic
TGGGACTGTTGCTGTGGTTT+TGG 0.168770 5.1:+1683269 MS.gene058074:CDS
CCTAACTTTGCAACATCTTT+TGG 0.178743 5.1:-1683000 None:intergenic
AGTTAGTGAGGGATTTCTTC+TGG 0.188486 5.1:+1682119 MS.gene058074:CDS
TTCCCGATCACTGCAGAAAA+AGG 0.234946 5.1:-1682323 None:intergenic
AATTGTTCACTGGATTAAAA+AGG 0.263893 5.1:+1682222 MS.gene058074:CDS
CCAAAAGATGTTGCAAAGTT+AGG 0.281442 5.1:+1683000 MS.gene058074:CDS
GGAGCAAGTTTCGTTTCTTA+TGG 0.297226 5.1:+1679784 MS.gene058074:CDS
CGTCTGGGCTTATCGCGTTT+TGG 0.309096 5.1:-1682772 None:intergenic
GGATTATTTATTCGATGTTA+TGG 0.311579 5.1:+1679617 MS.gene058074:CDS
ATACATTAGGTCCGGTGATA+TGG 0.313982 5.1:+1681617 MS.gene058074:intron
ACAACCAGGCTTTCTTCTAA+TGG 0.315169 5.1:+1683138 MS.gene058074:CDS
TACAGTTACAGAGGCTGATT+TGG 0.318868 5.1:+1681659 MS.gene058074:CDS
TGCTATGTGCGGTTCCGATT+TGG 0.329919 5.1:+1679685 MS.gene058074:CDS
TCTCTATTTGTCGCAGATAT+TGG 0.336013 5.1:+1679868 MS.gene058074:CDS
TGGAAACTTGCATTCGTTAG+AGG 0.346382 5.1:+1683158 MS.gene058074:CDS
AAAGTAGAGGTCTACGCGTC+TGG 0.348134 5.1:-1682788 None:intergenic
CATCTTCTTCATCTTCTTGA+AGG 0.364952 5.1:+1681684 MS.gene058074:CDS
GATTGGAAGTGGGTGGCCTT+AGG 0.367105 5.1:+1683246 MS.gene058074:CDS
CGAGCATTGTTGTTGGGAGC+AGG 0.370322 5.1:+1683315 MS.gene058074:CDS
GTTAGTGAGGGATTTCTTCT+GGG 0.373539 5.1:+1682120 MS.gene058074:CDS
ATATTATTGCTCGAAGGATT+TGG 0.373822 5.1:+1682347 MS.gene058074:CDS
TGGACGGTTCCGCCGGGATT+CGG 0.387516 5.1:+1679804 MS.gene058074:CDS
TTGGAGGAATGCCCTCATAA+TGG 0.394374 5.1:+1682193 MS.gene058074:CDS
AATCTGTCGGGCATTGTTGA+TGG 0.394962 5.1:-1683211 None:intergenic
GTTAGAGGATGCGTCTTTGA+TGG 0.400725 5.1:+1683173 MS.gene058074:CDS
TTTGTCGAGATGTGCGTTGA+TGG 0.403304 5.1:+1683107 MS.gene058074:CDS
GATTCGGTGCTCGCCGTCTC+TGG 0.407752 5.1:+1679820 MS.gene058074:CDS
ACGCTACCAAACACGCTTCT+CGG 0.411331 5.1:+1679958 MS.gene058074:CDS
GACTTCTCTTCATCGGTCTT+CGG 0.414196 5.1:+1679763 MS.gene058074:CDS
GGCGTCATCAGAACACGAAT+TGG 0.416015 5.1:-1679931 None:intergenic
TGCGAGCATAGGATCCCATT+TGG 0.417922 5.1:-1682158 None:intergenic
CCATGTCTTCGTGATGCAAA+AGG 0.428688 5.1:-1682972 None:intergenic
TTTCTTATGGACGGTTCCGC+CGG 0.430105 5.1:+1679797 MS.gene058074:CDS
TGGAGGAATGCCCTCATAAT+GGG 0.431673 5.1:+1682194 MS.gene058074:CDS
GTAGGGCGAGCATTGTTGTT+GGG 0.436511 5.1:+1683309 MS.gene058074:CDS
ACAATTGATGTCCCATTATG+AGG 0.437523 5.1:-1682205 None:intergenic
CATCTTCTTGAAGGGAAAGA+TGG 0.441427 5.1:+1681693 MS.gene058074:CDS
ATCATGACCGCAAGCCAAAT+CGG 0.444905 5.1:-1679699 None:intergenic
GAATTACCGAGAAGCGTGTT+TGG 0.447476 5.1:-1679964 None:intergenic
AGGCCACCCACTTCCAATCC+AGG 0.453527 5.1:-1683242 None:intergenic
TATGAAGAAACCTTCAATAA+CGG 0.462966 5.1:+1679644 MS.gene058074:CDS
TGGAAGTGGGTGGCCTTAGG+TGG 0.465831 5.1:+1683249 MS.gene058074:CDS
AGATTGGTCACGGCCTGGAT+TGG 0.468477 5.1:+1683229 MS.gene058074:CDS
ATTTGGCTTGCGGTCATGAT+CGG 0.474486 5.1:+1679702 MS.gene058074:CDS
GTCACGGCCTGGATTGGAAG+TGG 0.475906 5.1:+1683235 MS.gene058074:CDS
ACGAATGTTTCCGTTATTGA+AGG 0.481101 5.1:-1679654 None:intergenic
GTGGAATCTCGCAAAGGAGA+TGG 0.484870 5.1:+1682925 MS.gene058074:intron
ATCAACAATGCCCGACAGAT+TGG 0.485079 5.1:+1683213 MS.gene058074:CDS
GTTTGGTGATCGGTTGGTCA+TGG 0.485828 5.1:+1679724 MS.gene058074:CDS
AGACGGCGAGCACCGAATCC+CGG 0.489608 5.1:-1679816 None:intergenic
GCGAGCATAGGATCCCATTT+GGG 0.491899 5.1:-1682157 None:intergenic
TGACAGCTCCCCACATTCCA+TGG 0.497311 5.1:-1683029 None:intergenic
TGCGGTTCCGATTTGGCTTG+CGG 0.503029 5.1:+1679692 MS.gene058074:CDS
GTCATGATCGGTTTGGTGAT+CGG 0.504723 5.1:+1679714 MS.gene058074:CDS
AGTAGGGCGAGCATTGTTGT+TGG 0.504978 5.1:+1683308 MS.gene058074:CDS
TTCTTATGGACGGTTCCGCC+GGG 0.508895 5.1:+1679798 MS.gene058074:CDS
ATGGGACATCAATTGTTCAC+TGG 0.510323 5.1:+1682212 MS.gene058074:CDS
TATTGCTCGAAGGATTTGGC+AGG 0.516863 5.1:+1682351 MS.gene058074:CDS
GCTTGCGGTCATGATCGGTT+TGG 0.517226 5.1:+1679707 MS.gene058074:CDS
CAAATATGCAATACAAAGCT+TGG 0.518060 5.1:+1681754 MS.gene058074:CDS
CAAGTTTCGTTTCTTATGGA+CGG 0.518083 5.1:+1679788 MS.gene058074:CDS
TCTAGTTGGGTAATCAAACC+TGG 0.518454 5.1:+1682811 MS.gene058074:CDS
TGATCGGTTTGGTGATCGGT+TGG 0.518750 5.1:+1679718 MS.gene058074:CDS
GGAAGTGGGTGGCCTTAGGT+GGG 0.520331 5.1:+1683250 MS.gene058074:CDS
GTTTCCATTAGAAGAAAGCC+TGG 0.520462 5.1:-1683142 None:intergenic
TAGGAGTTCGCCATGGAATG+TGG 0.521492 5.1:+1683019 MS.gene058074:CDS
CGCACACTGCAAAGTGTTGG+AGG 0.521745 5.1:+1682177 MS.gene058074:CDS
GAGCATTGTTGTTGGGAGCA+GGG 0.522764 5.1:+1683316 MS.gene058074:CDS
ATCTTCTTCATCTTCTTGAA+GGG 0.522948 5.1:+1681685 MS.gene058074:CDS
GGAAAGATGGAGAGATTGAC+TGG 0.525971 5.1:+1681706 MS.gene058074:CDS
TGGAATCTCGCAAAGGAGAT+GGG 0.527938 5.1:+1682926 MS.gene058074:CDS
TCATGGCGTCCACGGTGGAC+CGG 0.529717 5.1:+1679741 MS.gene058074:CDS
CATGTCTTCGTGATGCAAAA+GGG 0.535250 5.1:-1682971 None:intergenic
TGAGAGCATACCAGAATGCT+AGG 0.537126 5.1:+1683070 MS.gene058074:CDS
GGTATACACAGTGGTGCAGT+AGG 0.538233 5.1:+1683291 MS.gene058074:CDS
CCGACAGATTGGTCACGGCC+TGG 0.540884 5.1:+1683224 MS.gene058074:CDS
GCTCGAAGGATTTGGCAGGC+TGG 0.543160 5.1:+1682355 MS.gene058074:CDS
TCGGTTGGTCATGGCGTCCA+CGG 0.546920 5.1:+1679733 MS.gene058074:CDS
AAGTAGAGGTCTACGCGTCT+GGG 0.548459 5.1:-1682787 None:intergenic
CTTAGGTGGGACTGTTGCTG+TGG 0.550839 5.1:+1683263 MS.gene058074:CDS
TCACGGCCTGGATTGGAAGT+GGG 0.553226 5.1:+1683236 MS.gene058074:CDS
GCTCGCACACTGCAAAGTGT+TGG 0.555461 5.1:+1682174 MS.gene058074:CDS
AAGAAATCCCTCACTAACTC+AGG 0.556254 5.1:-1682115 None:intergenic
ACTTTGCAGTGTGCGAGCAT+AGG 0.560803 5.1:-1682169 None:intergenic
TCAGAACACGAATTGGAAGA+AGG 0.560879 5.1:-1679924 None:intergenic
AGGAGTTCGCCATGGAATGT+GGG 0.565387 5.1:+1683020 MS.gene058074:CDS
CAGGCCGTGACCAATCTGTC+GGG 0.566688 5.1:-1683223 None:intergenic
CCAGGCCGTGACCAATCTGT+CGG 0.568274 5.1:-1683224 None:intergenic
AGCGTGTTTGGTAGCGTCGG+TGG 0.579757 5.1:-1679952 None:intergenic
CACAGCAACAGTCCCACCTA+AGG 0.583165 5.1:-1683262 None:intergenic
CAATTGATGTCCCATTATGA+GGG 0.583701 5.1:-1682204 None:intergenic
TGCGTCTTTGATGGAAGAGA+GGG 0.591648 5.1:+1683182 MS.gene058074:CDS
ATGCAACTCCTGAGTTAGTG+AGG 0.591962 5.1:+1682107 MS.gene058074:CDS
CTTCAAATACAGTTCTACTA+CGG 0.596069 5.1:-1682084 None:intergenic
TGGGCAGTTGTCTGCATGCG+AGG 0.601567 5.1:+1682945 MS.gene058074:CDS
CGGCCTGGATTGGAAGTGGG+TGG 0.605735 5.1:+1683239 MS.gene058074:CDS
AAGACCGATGAAGAGAAGTC+CGG 0.606267 5.1:-1679760 None:intergenic
CGGTGAACGCTAACCAGAGA+CGG 0.606502 5.1:-1679833 None:intergenic
ATGCGTCTTTGATGGAAGAG+AGG 0.608772 5.1:+1683181 MS.gene058074:CDS
TGCATACTACTGTGTGACAA+AGG 0.612553 5.1:+1682381 MS.gene058074:CDS
AATAGAGAAAGCAGAAAGAG+CGG 0.618635 5.1:-1679853 None:intergenic
GGGAATATATTATTGCTCGA+AGG 0.619326 5.1:+1682341 MS.gene058074:CDS
TGGACCGGACTTCTCTTCAT+CGG 0.622743 5.1:+1679756 MS.gene058074:CDS
TCTCTCGTCAGCCATATCAC+CGG 0.623742 5.1:-1681628 None:intergenic
TGCAACTCCTGAGTTAGTGA+GGG 0.625852 5.1:+1682108 MS.gene058074:CDS
GAGCAGGGCATAGATTTGCA+CGG 0.635579 5.1:+1683331 MS.gene058074:CDS
AGAAGCGTGTTTGGTAGCGT+CGG 0.637843 5.1:-1679955 None:intergenic
AGACAAGGATACAGTTACAG+AGG 0.641279 5.1:+1681650 MS.gene058074:CDS
TTACCCAACTAGAAAAGTAG+AGG 0.644640 5.1:-1682801 None:intergenic
GCTGTCAAGAAATTGCACTC+TGG 0.647856 5.1:+1683045 MS.gene058074:CDS
AATGCCCGACAGATTGGTCA+CGG 0.651595 5.1:+1683219 MS.gene058074:CDS
GGAGTTCGCCATGGAATGTG+GGG 0.655861 5.1:+1683021 MS.gene058074:CDS
TGATGGCAAGTAAAACAACC+AGG 0.673260 5.1:+1683124 MS.gene058074:CDS
AGCTTGGCGTTATGACTCTG+AGG 0.673296 5.1:+1681770 MS.gene058074:CDS
TATGGCTGACGAGAGAGACA+AGG 0.679529 5.1:+1681635 MS.gene058074:CDS
GTATACACAGTGGTGCAGTA+GGG 0.686841 5.1:+1683292 MS.gene058074:CDS
GCAAAGTTAGGAGTTCGCCA+TGG 0.689467 5.1:+1683012 MS.gene058074:CDS
GTTGGTCATGGCGTCCACGG+TGG 0.693217 5.1:+1679736 MS.gene058074:CDS
GATGCAGTGGAATCTCGCAA+AGG 0.695128 5.1:+1682919 MS.gene058074:intron
AAGAGAAGTCCGGTCCACCG+TGG 0.715281 5.1:-1679750 None:intergenic
CGGCGAGCACCGAATCCCGG+CGG 0.734938 5.1:-1679813 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTGAAATTTATC+TGG + chr5.1:1680034-1680053 MS.gene058074:intron 10.0%
!! AAAAAGAAATATAAGAAACA+GGG - chr5.1:1682618-1682637 None:intergenic 15.0%
!! TACAACATTAACTATTTATT+TGG - chr5.1:1682256-1682275 None:intergenic 15.0%
!! TGAAATATATATAATGTATC+AGG + chr5.1:1680070-1680089 MS.gene058074:intron 15.0%
!!! AGACTATATATAATTTTGTT+GGG + chr5.1:1680532-1680551 MS.gene058074:intron 15.0%
!!! TAGACTATATATAATTTTGT+TGG + chr5.1:1680531-1680550 MS.gene058074:intron 15.0%
!! AGAACTTATAGTAGAAAATA+TGG + chr5.1:1680231-1680250 MS.gene058074:intron 20.0%
!! AGGTTTATGAAAAATTAGAT+TGG - chr5.1:1682645-1682664 None:intergenic 20.0%
!! AGTATTATAACAACATAGAT+TGG - chr5.1:1681153-1681172 None:intergenic 20.0%
!! ATTTAATCTTCAATGTTGTA+GGG + chr5.1:1682730-1682749 MS.gene058074:intron 20.0%
!! CAAAAAGAAATATAAGAAAC+AGG - chr5.1:1682619-1682638 None:intergenic 20.0%
!! TAGCATCAACTATTTAATAA+TGG + chr5.1:1682869-1682888 MS.gene058074:intron 20.0%
!! TATTTAATCTTCAATGTTGT+AGG + chr5.1:1682729-1682748 MS.gene058074:intron 20.0%
!! TTGGTCTAATTTCAAAAATA+AGG + chr5.1:1679887-1679906 MS.gene058074:CDS 20.0%
!!! ATATTATACTGTATTTCTAG+CGG + chr5.1:1681551-1681570 MS.gene058074:intron 20.0%
!!! GATTTTTATTGTTGTTGTTA+AGG + chr5.1:1680472-1680491 MS.gene058074:intron 20.0%
!!! GTAATTCACTACATTATTTT+TGG + chr5.1:1679980-1679999 MS.gene058074:intron 20.0%
!!! TATACTTTTTCAGCATTTTT+AGG + chr5.1:1680129-1680148 MS.gene058074:intron 20.0%
!!! TATATAATTTTGTTGGGTTA+AGG + chr5.1:1680538-1680557 MS.gene058074:intron 20.0%
!!! TTTGTTATGATTTTTCTACT+TGG + chr5.1:1681338-1681357 MS.gene058074:intron 20.0%
! AAAACACTCTTTCAAAAATG+TGG - chr5.1:1680699-1680718 None:intergenic 25.0%
! AATTGTTCACTGGATTAAAA+AGG + chr5.1:1682222-1682241 MS.gene058074:CDS 25.0%
! ACATAAATCCACTTTAAACT+AGG - chr5.1:1681921-1681940 None:intergenic 25.0%
! AGAAAATCTTGTTAATCTGA+AGG + chr5.1:1682499-1682518 MS.gene058074:intron 25.0%
! GGATTATTTATTCGATGTTA+TGG + chr5.1:1679617-1679636 MS.gene058074:CDS 25.0%
! TATGAAGAAACCTTCAATAA+CGG + chr5.1:1679644-1679663 MS.gene058074:CDS 25.0%
! TGATACAAAATACCCTAATT+TGG + chr5.1:1681057-1681076 MS.gene058074:intron 25.0%
! TTTAATCTTCAATGTTGTAG+GGG + chr5.1:1682731-1682750 MS.gene058074:intron 25.0%
!! GGTTTCAATTCAAGTTATTA+GGG + chr5.1:1680001-1680020 MS.gene058074:intron 25.0%
!! TGGTTTCAATTCAAGTTATT+AGG + chr5.1:1680000-1680019 MS.gene058074:intron 25.0%
!! TGGTTTTTGATATAACACTA+TGG + chr5.1:1680403-1680422 MS.gene058074:intron 25.0%
!! TTTTACTTCCTAGTTTAAAG+TGG + chr5.1:1681910-1681929 MS.gene058074:intron 25.0%
!!! ATGAAGCGTTTTATTCATTT+TGG + chr5.1:1681578-1681597 MS.gene058074:intron 25.0%
!!! GTTTTATTCATTTTGGAACT+TGG + chr5.1:1681585-1681604 MS.gene058074:intron 25.0%
AAATTTGCAAACAAAGCCTT+AGG + chr5.1:1680926-1680945 MS.gene058074:intron 30.0%
AAGAGAGTAGATCAGATAAA+TGG + chr5.1:1680313-1680332 MS.gene058074:intron 30.0%
AAGGAACTCAAACATTGTAT+TGG - chr5.1:1680786-1680805 None:intergenic 30.0%
AATAAATCAGCATCTGATCT+TGG + chr5.1:1682032-1682051 MS.gene058074:intron 30.0%
AATATATCAAACAACCATCC+AGG - chr5.1:1681536-1681555 None:intergenic 30.0%
AATCAAACCTGGTAAGAAAT+AGG + chr5.1:1682822-1682841 MS.gene058074:intron 30.0%
AATTGATGTTCCTATGTAAG+TGG + chr5.1:1681498-1681517 MS.gene058074:intron 30.0%
AATTTGCAAACAAAGCCTTA+GGG + chr5.1:1680927-1680946 MS.gene058074:intron 30.0%
AGGTAGAGAATCTATTAAGA+AGG + chr5.1:1680350-1680369 MS.gene058074:intron 30.0%
ATATGGTACAAACTAGACTT+AGG + chr5.1:1680248-1680267 MS.gene058074:intron 30.0%
ATATTATTGCTCGAAGGATT+TGG + chr5.1:1682347-1682366 MS.gene058074:CDS 30.0%
ATCTTCTTCATCTTCTTGAA+GGG + chr5.1:1681685-1681704 MS.gene058074:CDS 30.0%
ATTAGACACACAGAAGAAAT+TGG - chr5.1:1681404-1681423 None:intergenic 30.0%
CAAATATGCAATACAAAGCT+TGG + chr5.1:1681754-1681773 MS.gene058074:CDS 30.0%
CTCAAAAATTGTATCACAAC+TGG + chr5.1:1681085-1681104 MS.gene058074:intron 30.0%
CTTCAAATACAGTTCTACTA+CGG - chr5.1:1682087-1682106 None:intergenic 30.0%
GAAGCTGATTGTCATATTTA+AGG - chr5.1:1681429-1681448 None:intergenic 30.0%
GATTATACAGTGTAAACGTA+AGG + chr5.1:1682699-1682718 MS.gene058074:intron 30.0%
GTATTTAATGTACACTGACA+TGG + chr5.1:1682273-1682292 MS.gene058074:intron 30.0%
TACAAAATACCCTAATTTGG+AGG + chr5.1:1681060-1681079 MS.gene058074:intron 30.0%
TTAATCTTCAATGTTGTAGG+GGG + chr5.1:1682732-1682751 MS.gene058074:intron 30.0%
TTGGATATCCTTTCTATTTG+AGG + chr5.1:1681884-1681903 MS.gene058074:intron 30.0%
TTGGTTATTGCACATACATT+AGG + chr5.1:1681604-1681623 MS.gene058074:intron 30.0%
! AGCTTCTTTTTACTGTAACA+TGG + chr5.1:1681443-1681462 MS.gene058074:intron 30.0%
! ATTGTATCACAACTGGATTT+TGG + chr5.1:1681092-1681111 MS.gene058074:intron 30.0%
! CAAGCTTTGTATTGCATATT+TGG - chr5.1:1681756-1681775 None:intergenic 30.0%
! CTTTGTTTGCAAATTTGGAA+GGG - chr5.1:1680922-1680941 None:intergenic 30.0%
! TAATGAGTTGGATAAAGACA+TGG + chr5.1:1680383-1680402 MS.gene058074:intron 30.0%
! TATTGTTGTTGTTAAGGAAC+TGG + chr5.1:1680478-1680497 MS.gene058074:intron 30.0%
! TGTTCAATTTTCATCTTGTG+CGG + chr5.1:1681803-1681822 MS.gene058074:intron 30.0%
!! AAGTTTTATCCCACTAAACA+GGG - chr5.1:1680452-1680471 None:intergenic 30.0%
!! TAAAAGTGCCTCAAATAGAA+AGG - chr5.1:1681895-1681914 None:intergenic 30.0%
!! TAAGGCTTTGTTTGCAAATT+TGG - chr5.1:1680927-1680946 None:intergenic 30.0%
!! TTTTCAGCATTTTTAGGAAC+TGG + chr5.1:1680135-1680154 MS.gene058074:intron 30.0%
!!! TTTTGAGTTCCTCCAAATTA+GGG - chr5.1:1681072-1681091 None:intergenic 30.0%
!!! TTTTTGAGTTCCTCCAAATT+AGG - chr5.1:1681073-1681092 None:intergenic 30.0%
AAACTAGACTTAGGTGGTTT+GGG + chr5.1:1680257-1680276 MS.gene058074:intron 35.0%
AAATGGAGTCAAATCACTAG+AGG + chr5.1:1680330-1680349 MS.gene058074:intron 35.0%
AATAGAGAAAGCAGAAAGAG+CGG - chr5.1:1679856-1679875 None:intergenic 35.0%
ACAATTGATGTCCCATTATG+AGG - chr5.1:1682208-1682227 None:intergenic 35.0%
ACGAATGTTTCCGTTATTGA+AGG - chr5.1:1679657-1679676 None:intergenic 35.0%
ACTCTCAAACAAAGCCTAAA+AGG - chr5.1:1680616-1680635 None:intergenic 35.0%
AGATCCTACACATAGAATCA+CGG - chr5.1:1681377-1681396 None:intergenic 35.0%
ATTAGAGAGATAGAGAGAGT+TGG + chr5.1:1680205-1680224 MS.gene058074:intron 35.0%
CAAGTTTCGTTTCTTATGGA+CGG + chr5.1:1679788-1679807 MS.gene058074:CDS 35.0%
CAATTGATGTCCCATTATGA+GGG - chr5.1:1682207-1682226 None:intergenic 35.0%
CATCTTCTTCATCTTCTTGA+AGG + chr5.1:1681684-1681703 MS.gene058074:CDS 35.0%
CCAAAAGATGTTGCAAAGTT+AGG + chr5.1:1683000-1683019 MS.gene058074:CDS 35.0%
CTCTTTACTACAGAATCCAA+AGG - chr5.1:1680298-1680317 None:intergenic 35.0%
GGATCTAGAGATTAATGAGT+TGG + chr5.1:1680371-1680390 MS.gene058074:intron 35.0%
GGGAATATATTATTGCTCGA+AGG + chr5.1:1682341-1682360 MS.gene058074:CDS 35.0%
TATTGCACATACATTAGGTC+CGG + chr5.1:1681609-1681628 MS.gene058074:intron 35.0%
TCTCTATTTGTCGCAGATAT+TGG + chr5.1:1679868-1679887 MS.gene058074:CDS 35.0%
TCTGTTTGAGAGTTTAGGAA+GGG + chr5.1:1680950-1680969 MS.gene058074:intron 35.0%
TTACCCAACTAGAAAAGTAG+AGG - chr5.1:1682804-1682823 None:intergenic 35.0%
TTAGAGAGATAGAGAGAGTT+GGG + chr5.1:1680206-1680225 MS.gene058074:intron 35.0%
TTATCTCGTTTCTTTCCCAA+TGG + chr5.1:1682448-1682467 MS.gene058074:intron 35.0%
TTCCATATTTGACACCCAAA+AGG + chr5.1:1681953-1681972 MS.gene058074:intron 35.0%
TTTGCAAATTTGGAAGGGAA+GGG - chr5.1:1680917-1680936 None:intergenic 35.0%
TTTGGAAAAAAGGAAGAAGC+AGG - chr5.1:1680884-1680903 None:intergenic 35.0%
! AACTTTGCCTATTTCTTACC+AGG - chr5.1:1682832-1682851 None:intergenic 35.0%
! ATGATGATTTTCGTCCCAAA+TGG + chr5.1:1682143-1682162 MS.gene058074:CDS 35.0%
! CAAAAATAAGGAGAAAGTGC+TGG + chr5.1:1679899-1679918 MS.gene058074:CDS 35.0%
! CCTAACTTTGCAACATCTTT+TGG - chr5.1:1683003-1683022 None:intergenic 35.0%
! CTTTGTTTGAGAGTTTGAAG+GGG + chr5.1:1680622-1680641 MS.gene058074:intron 35.0%
! GACTATGTAATGAGCCTTTT+GGG - chr5.1:1681970-1681989 None:intergenic 35.0%
! GATTGACTGGCAAAGTTTTA+TGG + chr5.1:1681719-1681738 MS.gene058074:CDS 35.0%
! GTTTGAGTTCCTTCAAAGTA+GGG + chr5.1:1680793-1680812 MS.gene058074:intron 35.0%
! TAGGAACTGGTTTATATGTG+TGG + chr5.1:1680148-1680167 MS.gene058074:intron 35.0%
! TATCACAACTGGATTTTGGA+GGG + chr5.1:1681096-1681115 MS.gene058074:intron 35.0%
! TGACTATGTAATGAGCCTTT+TGG - chr5.1:1681971-1681990 None:intergenic 35.0%
! TGATGATTTTCGTCCCAAAT+GGG + chr5.1:1682144-1682163 MS.gene058074:CDS 35.0%
! TGTTTGAGTTCCTTCAAAGT+AGG + chr5.1:1680792-1680811 MS.gene058074:intron 35.0%
! TTTGAGTTCCTTCAAAGTAG+GGG + chr5.1:1680794-1680813 MS.gene058074:intron 35.0%
! TTTTCTGACAACACATACAC+AGG - chr5.1:1682665-1682684 None:intergenic 35.0%
! TTTTTACTTCGCTGCCTTTT+AGG + chr5.1:1680599-1680618 MS.gene058074:intron 35.0%
!! ACTGGCAAAGTTTTATGGAA+AGG + chr5.1:1681724-1681743 MS.gene058074:CDS 35.0%
!! CAAGTTTTATCCCACTAAAC+AGG - chr5.1:1680453-1680472 None:intergenic 35.0%
!! CTTTTCTAGTGACAGAAGAA+TGG - chr5.1:1682481-1682500 None:intergenic 35.0%
!! GCTTTGTTTGAGAGTTTGAA+GGG + chr5.1:1680621-1680640 MS.gene058074:intron 35.0%
!! GCTTTGTTTGCAAATTTGGA+AGG - chr5.1:1680923-1680942 None:intergenic 35.0%
!! TAGACCTCTACTTTTCTAGT+TGG + chr5.1:1682797-1682816 MS.gene058074:CDS 35.0%
!! TGTCTAGTATTGACATGTGA+TGG + chr5.1:1680095-1680114 MS.gene058074:intron 35.0%
!!! AGACCTCTACTTTTCTAGTT+GGG + chr5.1:1682798-1682817 MS.gene058074:CDS 35.0%
AAACTCTCAAACAGACCCTA+AGG - chr5.1:1680945-1680964 None:intergenic 40.0%
AAGAAATCCCTCACTAACTC+AGG - chr5.1:1682118-1682137 None:intergenic 40.0%
AATGCTGCAACCATACTCTA+AGG - chr5.1:1681302-1681321 None:intergenic 40.0%
ACAACCAGGCTTTCTTCTAA+TGG + chr5.1:1683138-1683157 MS.gene058074:CDS 40.0%
AGACAAGGATACAGTTACAG+AGG + chr5.1:1681650-1681669 MS.gene058074:CDS 40.0%
AGGAATAGAAGACTTCGGAA+TGG - chr5.1:1680857-1680876 None:intergenic 40.0%
AGTTAGTGAGGGATTTCTTC+TGG + chr5.1:1682119-1682138 MS.gene058074:CDS 40.0%
ATACATTAGGTCCGGTGATA+TGG + chr5.1:1681617-1681636 MS.gene058074:intron 40.0%
ATGGGACATCAATTGTTCAC+TGG + chr5.1:1682212-1682231 MS.gene058074:CDS 40.0%
CAAACTAGACTTAGGTGGTT+TGG + chr5.1:1680256-1680275 MS.gene058074:intron 40.0%
CATCTTCTTGAAGGGAAAGA+TGG + chr5.1:1681693-1681712 MS.gene058074:CDS 40.0%
CATGTCTTCGTGATGCAAAA+GGG - chr5.1:1682974-1682993 None:intergenic 40.0%
CTAGAAGTGACCACTTACAT+AGG - chr5.1:1681511-1681530 None:intergenic 40.0%
GAAAGAAAGGAAGGATGAAG+TGG + chr5.1:1680981-1681000 MS.gene058074:intron 40.0%
GATGAAGTGGAAGGAATGAA+GGG + chr5.1:1680994-1681013 MS.gene058074:intron 40.0%
GCATGTAGAGAGATAACCTT+TGG + chr5.1:1680279-1680298 MS.gene058074:intron 40.0%
GGAATAGAAGACTTCGGAAT+GGG - chr5.1:1680856-1680875 None:intergenic 40.0%
GGAGCAAGTTTCGTTTCTTA+TGG + chr5.1:1679784-1679803 MS.gene058074:CDS 40.0%
GTCTGTTTGAGAGTTTAGGA+AGG + chr5.1:1680949-1680968 MS.gene058074:intron 40.0%
GTGGAAGGAATAGAAGACTT+CGG - chr5.1:1680862-1680881 None:intergenic 40.0%
GTTAGTGAGGGATTTCTTCT+GGG + chr5.1:1682120-1682139 MS.gene058074:CDS 40.0%
GTTTCCATTAGAAGAAAGCC+TGG - chr5.1:1683145-1683164 None:intergenic 40.0%
GTTTGCAAATTTGGAAGGGA+AGG - chr5.1:1680918-1680937 None:intergenic 40.0%
TACAGTTACAGAGGCTGATT+TGG + chr5.1:1681659-1681678 MS.gene058074:CDS 40.0%
TAGAGAGATAGAGAGAGTTG+GGG + chr5.1:1680207-1680226 MS.gene058074:intron 40.0%
TAGGGTCTGTTTGAGAGTTT+AGG + chr5.1:1680945-1680964 MS.gene058074:intron 40.0%
TCAAAATCCCCCTACTTTGA+AGG - chr5.1:1680805-1680824 None:intergenic 40.0%
TCAGAACACGAATTGGAAGA+AGG - chr5.1:1679927-1679946 None:intergenic 40.0%
TCTAGTTGGGTAATCAAACC+TGG + chr5.1:1682811-1682830 MS.gene058074:CDS 40.0%
TGATGGCAAGTAAAACAACC+AGG + chr5.1:1683124-1683143 MS.gene058074:CDS 40.0%
TGCATACTACTGTGTGACAA+AGG + chr5.1:1682381-1682400 MS.gene058074:CDS 40.0%
TGCGGATATTGTCTGTAATC+TGG + chr5.1:1681821-1681840 MS.gene058074:intron 40.0%
TGGAAACTTGCATTCGTTAG+AGG + chr5.1:1683158-1683177 MS.gene058074:CDS 40.0%
TGGTACAAACTAGACTTAGG+TGG + chr5.1:1680251-1680270 MS.gene058074:intron 40.0%
TTCTAGTGACAGAAGAATGG+AGG - chr5.1:1682478-1682497 None:intergenic 40.0%
TTGAGTTCCTTCAAAGTAGG+GGG + chr5.1:1680795-1680814 MS.gene058074:intron 40.0%
! AAGGGAGGACTTTGAAAGAA+AGG + chr5.1:1680968-1680987 MS.gene058074:intron 40.0%
! CATCTGTTTTCCTAGCATTC+TGG - chr5.1:1683083-1683102 None:intergenic 40.0%
! CTTGGAGCTTTTAACAGACA+GGG + chr5.1:1682050-1682069 MS.gene058074:intron 40.0%
! CTTTTGCATCACGAAGACAT+GGG + chr5.1:1682973-1682992 MS.gene058074:CDS 40.0%
! GAGGACTTTGAAAGAAAGGA+AGG + chr5.1:1680972-1680991 MS.gene058074:intron 40.0%
! GTATCACAACTGGATTTTGG+AGG + chr5.1:1681095-1681114 MS.gene058074:intron 40.0%
! TCTTGGAGCTTTTAACAGAC+AGG + chr5.1:1682049-1682068 MS.gene058074:intron 40.0%
! TTGGAGCTTTTAACAGACAG+GGG + chr5.1:1682051-1682070 MS.gene058074:intron 40.0%
! TTTTGCATCACGAAGACATG+GGG + chr5.1:1682974-1682993 MS.gene058074:CDS 40.0%
!! AACTGGATTTTGGAGGGTTT+TGG + chr5.1:1681102-1681121 MS.gene058074:intron 40.0%
!! AGCCTTTTGGGTGTCAAATA+TGG - chr5.1:1681958-1681977 None:intergenic 40.0%
!! CATACTCTAAGGCTTGGTTT+GGG - chr5.1:1681291-1681310 None:intergenic 40.0%
!! CGTCGATATTTTGCTATGTG+CGG + chr5.1:1679674-1679693 MS.gene058074:CDS 40.0%
!! CGTTTTGGCAAACTTGGATA+GGG - chr5.1:1682760-1682779 None:intergenic 40.0%
!! GGCTTTGTTTGAGAGTTTGA+AGG + chr5.1:1680620-1680639 MS.gene058074:intron 40.0%
!! TTATCGCGTTTTGGCAAACT+TGG - chr5.1:1682766-1682785 None:intergenic 40.0%
!!! AAGGAATGAAGGGTTTTGAG+AGG + chr5.1:1681004-1681023 MS.gene058074:intron 40.0%
!!! AGGAATGAAGGGTTTTGAGA+GGG + chr5.1:1681005-1681024 MS.gene058074:intron 40.0%
AAAAGGAAGAAGCAGGTGGA+AGG - chr5.1:1680877-1680896 None:intergenic 45.0%
AAATTTGGAAGGGAAGGGAG+GGG - chr5.1:1680912-1680931 None:intergenic 45.0%
AAGACCGATGAAGAGAAGTC+CGG - chr5.1:1679763-1679782 None:intergenic 45.0%
AGTGTGCGAAATTGATGCAG+TGG + chr5.1:1682906-1682925 MS.gene058074:intron 45.0%
AGTTTGGAGGGGAGATTAGA+GGG - chr5.1:1681268-1681287 None:intergenic 45.0%
ATAGAAGACTTCGGAATGGG+AGG - chr5.1:1680853-1680872 None:intergenic 45.0%
ATCAACAATGCCCGACAGAT+TGG + chr5.1:1683213-1683232 MS.gene058074:CDS 45.0%
ATCATGACCGCAAGCCAAAT+CGG - chr5.1:1679702-1679721 None:intergenic 45.0%
ATGCAACTCCTGAGTTAGTG+AGG + chr5.1:1682107-1682126 MS.gene058074:CDS 45.0%
ATGCGTCTTTGATGGAAGAG+AGG + chr5.1:1683181-1683200 MS.gene058074:CDS 45.0%
CAAATTTGGAAGGGAAGGGA+GGG - chr5.1:1680913-1680932 None:intergenic 45.0%
CCAAACCAAGCCTTAGAGTA+TGG + chr5.1:1681289-1681308 MS.gene058074:intron 45.0%
CCATGTCTTCGTGATGCAAA+AGG - chr5.1:1682975-1682994 None:intergenic 45.0%
CTGCAGAAAAAGGGGAACTA+TGG - chr5.1:1682316-1682335 None:intergenic 45.0%
GAAAGGAAGGATGAAGTGGA+AGG + chr5.1:1680985-1681004 MS.gene058074:intron 45.0%
GACTTCTCTTCATCGGTCTT+CGG + chr5.1:1679763-1679782 MS.gene058074:CDS 45.0%
GCTGTCAAGAAATTGCACTC+TGG + chr5.1:1683045-1683064 MS.gene058074:CDS 45.0%
GGAAAAAAGGAAGAAGCAGG+TGG - chr5.1:1680881-1680900 None:intergenic 45.0%
GGAAAGATGGAGAGATTGAC+TGG + chr5.1:1681706-1681725 MS.gene058074:CDS 45.0%
GGATGAAGTGGAAGGAATGA+AGG + chr5.1:1680993-1681012 MS.gene058074:intron 45.0%
GTATACACAGTGGTGCAGTA+GGG + chr5.1:1683292-1683311 MS.gene058074:CDS 45.0%
GTTAGAGGATGCGTCTTTGA+TGG + chr5.1:1683173-1683192 MS.gene058074:CDS 45.0%
GTTTGAGAGTTTAGGAAGGG+AGG + chr5.1:1680953-1680972 MS.gene058074:intron 45.0%
GTTTGAGAGTTTGAAGGGGA+GGG + chr5.1:1680626-1680645 MS.gene058074:intron 45.0%
TAGAAGACTTCGGAATGGGA+GGG - chr5.1:1680852-1680871 None:intergenic 45.0%
TATTGCTCGAAGGATTTGGC+AGG + chr5.1:1682351-1682370 MS.gene058074:CDS 45.0%
TCCCGATCACTGCAGAAAAA+GGG - chr5.1:1682325-1682344 None:intergenic 45.0%
TGCAACTCCTGAGTTAGTGA+GGG + chr5.1:1682108-1682127 MS.gene058074:CDS 45.0%
TGCGTCTTTGATGGAAGAGA+GGG + chr5.1:1683182-1683201 MS.gene058074:CDS 45.0%
TGGAATCTCGCAAAGGAGAT+GGG + chr5.1:1682926-1682945 MS.gene058074:CDS 45.0%
TGGAGGAATGCCCTCATAAT+GGG + chr5.1:1682194-1682213 MS.gene058074:CDS 45.0%
TGTTTGAGAGTTTGAAGGGG+AGG + chr5.1:1680625-1680644 MS.gene058074:intron 45.0%
TTCCCGATCACTGCAGAAAA+AGG - chr5.1:1682326-1682345 None:intergenic 45.0%
TTCGCCGTGATTCTATGTGT+AGG + chr5.1:1681370-1681389 MS.gene058074:intron 45.0%
TTGGAGGAATGCCCTCATAA+TGG + chr5.1:1682193-1682212 MS.gene058074:CDS 45.0%
TTTGTCGAGATGTGCGTTGA+TGG + chr5.1:1683107-1683126 MS.gene058074:CDS 45.0%
! AAGAATGGAGGCTAGCCATT+GGG - chr5.1:1682466-1682485 None:intergenic 45.0%
! AATCTGTCGGGCATTGTTGA+TGG - chr5.1:1683214-1683233 None:intergenic 45.0%
! CCTTTTGCATCACGAAGACA+TGG + chr5.1:1682972-1682991 MS.gene058074:CDS 45.0%
! GAATTACCGAGAAGCGTGTT+TGG - chr5.1:1679967-1679986 None:intergenic 45.0%
! TCCCCTTTTTCTGCAGTGAT+CGG + chr5.1:1682320-1682339 MS.gene058074:CDS 45.0%
! TGAGAGCATACCAGAATGCT+AGG + chr5.1:1683070-1683089 MS.gene058074:CDS 45.0%
!! AAGTGGTCACTTCTAGTTCC+TGG + chr5.1:1681515-1681534 MS.gene058074:intron 45.0%
!! ATTTGGCTTGCGGTCATGAT+CGG + chr5.1:1679702-1679721 MS.gene058074:CDS 45.0%
!! CCATACTCTAAGGCTTGGTT+TGG - chr5.1:1681292-1681311 None:intergenic 45.0%
!! GATTTTGGAGGGTTTTGGTG+TGG + chr5.1:1681107-1681126 MS.gene058074:intron 45.0%
!! GCGTTTTGGCAAACTTGGAT+AGG - chr5.1:1682761-1682780 None:intergenic 45.0%
!! GTCATGATCGGTTTGGTGAT+CGG + chr5.1:1679714-1679733 MS.gene058074:CDS 45.0%
!! TAAGGCTTGGTTTGGGAGTT+TGG - chr5.1:1681284-1681303 None:intergenic 45.0%
!! TGCAACCATACTCTAAGGCT+TGG - chr5.1:1681297-1681316 None:intergenic 45.0%
!!! GGAATGAAGGGTTTTGAGAG+GGG + chr5.1:1681006-1681025 MS.gene058074:intron 45.0%
!!! GTGGTTTTGGGTATACACAG+TGG + chr5.1:1683282-1683301 MS.gene058074:CDS 45.0%
!!! TACAAATAAATAATTTTTTT+TGG + chr5.1:1681865-1681884 MS.gene058074:intron 5.0%
AAAGTAGAGGTCTACGCGTC+TGG - chr5.1:1682791-1682810 None:intergenic 50.0%
AAGTAGAGGTCTACGCGTCT+GGG - chr5.1:1682790-1682809 None:intergenic 50.0%
ACGCTACCAAACACGCTTCT+CGG + chr5.1:1679958-1679977 MS.gene058074:CDS 50.0%
ACTTTGCAGTGTGCGAGCAT+AGG - chr5.1:1682172-1682191 None:intergenic 50.0%
AGCTTGGCGTTATGACTCTG+AGG + chr5.1:1681770-1681789 MS.gene058074:CDS 50.0%
AGGAGTTCGCCATGGAATGT+GGG + chr5.1:1683020-1683039 MS.gene058074:CDS 50.0%
ATGCAGCTGACCCTGTTTAG+TGG + chr5.1:1680439-1680458 MS.gene058074:intron 50.0%
CCCGATCACTGCAGAAAAAG+GGG - chr5.1:1682324-1682343 None:intergenic 50.0%
GAGCAGGGCATAGATTTGCA+CGG + chr5.1:1683331-1683350 MS.gene058074:CDS 50.0%
GAGTTTGGAGGGGAGATTAG+AGG - chr5.1:1681269-1681288 None:intergenic 50.0%
GATGCAGTGGAATCTCGCAA+AGG + chr5.1:1682919-1682938 MS.gene058074:intron 50.0%
GCAAAGTTAGGAGTTCGCCA+TGG + chr5.1:1683012-1683031 MS.gene058074:CDS 50.0%
GCAAATTTGGAAGGGAAGGG+AGG - chr5.1:1680914-1680933 None:intergenic 50.0%
GCGAGCATAGGATCCCATTT+GGG - chr5.1:1682160-1682179 None:intergenic 50.0%
GGCGTCATCAGAACACGAAT+TGG - chr5.1:1679934-1679953 None:intergenic 50.0%
GGTATACACAGTGGTGCAGT+AGG + chr5.1:1683291-1683310 MS.gene058074:CDS 50.0%
GTGGAATCTCGCAAAGGAGA+TGG + chr5.1:1682925-1682944 MS.gene058074:intron 50.0%
GTTTGGAGGGGAGATTAGAG+GGG - chr5.1:1681267-1681286 None:intergenic 50.0%
TAGGAGTTCGCCATGGAATG+TGG + chr5.1:1683019-1683038 MS.gene058074:CDS 50.0%
TATGGCTGACGAGAGAGACA+AGG + chr5.1:1681635-1681654 MS.gene058074:CDS 50.0%
TCTCTCGTCAGCCATATCAC+CGG - chr5.1:1681631-1681650 None:intergenic 50.0%
TGCAGCTGACCCTGTTTAGT+GGG + chr5.1:1680440-1680459 MS.gene058074:intron 50.0%
TGCGAGCATAGGATCCCATT+TGG - chr5.1:1682161-1682180 None:intergenic 50.0%
TGCTATGTGCGGTTCCGATT+TGG + chr5.1:1679685-1679704 MS.gene058074:CDS 50.0%
TGGACCGGACTTCTCTTCAT+CGG + chr5.1:1679756-1679775 MS.gene058074:CDS 50.0%
TTTCTTATGGACGGTTCCGC+CGG + chr5.1:1679797-1679816 MS.gene058074:CDS 50.0%
! AATGCCCGACAGATTGGTCA+CGG + chr5.1:1683219-1683238 MS.gene058074:CDS 50.0%
! AGTAGGGCGAGCATTGTTGT+TGG + chr5.1:1683308-1683327 MS.gene058074:CDS 50.0%
! CCCCTTTTTCTGCAGTGATC+GGG + chr5.1:1682321-1682340 MS.gene058074:CDS 50.0%
! GAAGAATGGAGGCTAGCCAT+TGG - chr5.1:1682467-1682486 None:intergenic 50.0%
! GAGCATTGTTGTTGGGAGCA+GGG + chr5.1:1683316-1683335 MS.gene058074:CDS 50.0%
! GGGACTGTTGCTGTGGTTTT+GGG + chr5.1:1683270-1683289 MS.gene058074:CDS 50.0%
! GTAGGGCGAGCATTGTTGTT+GGG + chr5.1:1683309-1683328 MS.gene058074:CDS 50.0%
! GTTTGGTGATCGGTTGGTCA+TGG + chr5.1:1679724-1679743 MS.gene058074:CDS 50.0%
! TGGGACTGTTGCTGTGGTTT+TGG + chr5.1:1683269-1683288 MS.gene058074:CDS 50.0%
!! AGAAGCGTGTTTGGTAGCGT+CGG - chr5.1:1679958-1679977 None:intergenic 50.0%
!! AGGGGAGGGCTTTGGAAAAA+AGG - chr5.1:1680894-1680913 None:intergenic 50.0%
!! CTTGGTTTGGGAGTTTGGAG+GGG - chr5.1:1681279-1681298 None:intergenic 50.0%
!! GCTTGGTTTGGGAGTTTGGA+GGG - chr5.1:1681280-1681299 None:intergenic 50.0%
!! GGTCACTTCTAGTTCCTGGA+TGG + chr5.1:1681519-1681538 MS.gene058074:intron 50.0%
!! TGATCGGTTTGGTGATCGGT+TGG + chr5.1:1679718-1679737 MS.gene058074:CDS 50.0%
!! TTTTGAGAGGGGAGGGCTTT+GGG + chr5.1:1681017-1681036 MS.gene058074:intron 50.0%
!!! ATGAAGGGTTTTGAGAGGGG+AGG + chr5.1:1681009-1681028 MS.gene058074:intron 50.0%
!!! TGAAGGGTTTTGAGAGGGGA+GGG + chr5.1:1681010-1681029 MS.gene058074:intron 50.0%
ACTTCGGAATGGGAGGGCTT+TGG - chr5.1:1680846-1680865 None:intergenic 55.0%
AGAGTTTGAAGGGGAGGGTG+AGG + chr5.1:1680631-1680650 MS.gene058074:intron 55.0%
CACAGCAACAGTCCCACCTA+AGG - chr5.1:1683265-1683284 None:intergenic 55.0%
CGGTGAACGCTAACCAGAGA+CGG - chr5.1:1679836-1679855 None:intergenic 55.0%
CTTAGGTGGGACTGTTGCTG+TGG + chr5.1:1683263-1683282 MS.gene058074:CDS 55.0%
GAGTTTGAAGGGGAGGGTGA+GGG + chr5.1:1680632-1680651 MS.gene058074:intron 55.0%
GATTGGAAGTGGGTGGCCTT+AGG + chr5.1:1683246-1683265 MS.gene058074:CDS 55.0%
GCTCGCACACTGCAAAGTGT+TGG + chr5.1:1682174-1682193 MS.gene058074:CDS 55.0%
GCTTGCGGTCATGATCGGTT+TGG + chr5.1:1679707-1679726 MS.gene058074:CDS 55.0%
GGAGTTCGCCATGGAATGTG+GGG + chr5.1:1683021-1683040 MS.gene058074:CDS 55.0%
TGACAGCTCCCCACATTCCA+TGG - chr5.1:1683032-1683051 None:intergenic 55.0%
TTCTTATGGACGGTTCCGCC+GGG + chr5.1:1679798-1679817 MS.gene058074:CDS 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG + chr5.1:1681018-1681037 MS.gene058074:intron 55.0%
! AGATTGGTCACGGCCTGGAT+TGG + chr5.1:1683229-1683248 MS.gene058074:CDS 55.0%
! CGAGCATTGTTGTTGGGAGC+AGG + chr5.1:1683315-1683334 MS.gene058074:CDS 55.0%
! CGTCTGGGCTTATCGCGTTT+TGG - chr5.1:1682775-1682794 None:intergenic 55.0%
! CTTTGGGGGGAGAGGAATAG+AGG + chr5.1:1680655-1680674 MS.gene058074:intron 55.0%
! TCACGGCCTGGATTGGAAGT+GGG + chr5.1:1683236-1683255 MS.gene058074:CDS 55.0%
!! CGCACACTGCAAAGTGTTGG+AGG + chr5.1:1682177-1682196 MS.gene058074:CDS 55.0%
!! GGCTTGGTTTGGGAGTTTGG+AGG - chr5.1:1681281-1681300 None:intergenic 55.0%
!! TGCGGTTCCGATTTGGCTTG+CGG + chr5.1:1679692-1679711 MS.gene058074:CDS 55.0%
!! TGGAGGGTTTTGGTGTGGCT+TGG + chr5.1:1681112-1681131 MS.gene058074:intron 55.0%
!!! GTTTTGAGAGGGGAGGGCTT+TGG + chr5.1:1681016-1681035 MS.gene058074:intron 55.0%
AAGAGAAGTCCGGTCCACCG+TGG - chr5.1:1679753-1679772 None:intergenic 60.0%
AAGGGGAGGGTGAGGGCTTT+GGG + chr5.1:1680639-1680658 MS.gene058074:intron 60.0%
AGGCCACCCACTTCCAATCC+AGG - chr5.1:1683245-1683264 None:intergenic 60.0%
CAGGCCGTGACCAATCTGTC+GGG - chr5.1:1683226-1683245 None:intergenic 60.0%
CCAGGCCGTGACCAATCTGT+CGG - chr5.1:1683227-1683246 None:intergenic 60.0%
GCTCGAAGGATTTGGCAGGC+TGG + chr5.1:1682355-1682374 MS.gene058074:CDS 60.0%
TGGGCAGTTGTCTGCATGCG+AGG + chr5.1:1682945-1682964 MS.gene058074:CDS 60.0%
TTGGAAGGGAAGGGAGGGGA+GGG - chr5.1:1680908-1680927 None:intergenic 60.0%
TTTGGAAGGGAAGGGAGGGG+AGG - chr5.1:1680909-1680928 None:intergenic 60.0%
! GGAAGTGGGTGGCCTTAGGT+GGG + chr5.1:1683250-1683269 MS.gene058074:CDS 60.0%
! GTCACGGCCTGGATTGGAAG+TGG + chr5.1:1683235-1683254 MS.gene058074:CDS 60.0%
! TCGGTTGGTCATGGCGTCCA+CGG + chr5.1:1679733-1679752 MS.gene058074:CDS 60.0%
! TGGAAGTGGGTGGCCTTAGG+TGG + chr5.1:1683249-1683268 MS.gene058074:CDS 60.0%
!! AGCGTGTTTGGTAGCGTCGG+TGG - chr5.1:1679955-1679974 None:intergenic 60.0%
!! CGGAATGGGAGGGCTTTGGA+AGG - chr5.1:1680842-1680861 None:intergenic 60.0%
AGGGGAGGGTGAGGGCTTTG+GGG + chr5.1:1680640-1680659 MS.gene058074:intron 65.0%
GAAGGGGAGGGTGAGGGCTT+TGG + chr5.1:1680638-1680657 MS.gene058074:intron 65.0%
GTTGGTCATGGCGTCCACGG+TGG + chr5.1:1679736-1679755 MS.gene058074:CDS 65.0%
TCATGGCGTCCACGGTGGAC+CGG + chr5.1:1679741-1679760 MS.gene058074:CDS 65.0%
TGGACGGTTCCGCCGGGATT+CGG + chr5.1:1679804-1679823 MS.gene058074:CDS 65.0%
! CCGACAGATTGGTCACGGCC+TGG + chr5.1:1683224-1683243 MS.gene058074:CDS 65.0%
! CGGCCTGGATTGGAAGTGGG+TGG + chr5.1:1683239-1683258 MS.gene058074:CDS 65.0%
!! AGACGGCGAGCACCGAATCC+CGG - chr5.1:1679819-1679838 None:intergenic 65.0%
!! GATTCGGTGCTCGCCGTCTC+TGG + chr5.1:1679820-1679839 MS.gene058074:CDS 65.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr5.1:1680902-1680921 None:intergenic 70.0%
! GGGGAGGGTGAGGGCTTTGG+GGG + chr5.1:1680641-1680660 MS.gene058074:intron 70.0%
!! GGGAGGGTGAGGGCTTTGGG+GGG + chr5.1:1680642-1680661 MS.gene058074:intron 70.0%
!! GGTGAGGGCTTTGGGGGGAG+AGG + chr5.1:1680647-1680666 MS.gene058074:intron 70.0%
!! CGGCGAGCACCGAATCCCGG+CGG - chr5.1:1679816-1679835 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 1679612 1683359 1679612 ID=MS.gene058074
chr5.1 mRNA 1679612 1683359 1679612 ID=MS.gene058074.t1;Parent=MS.gene058074
chr5.1 exon 1679612 1679979 1679612 ID=MS.gene058074.t1.exon1;Parent=MS.gene058074.t1
chr5.1 CDS 1679612 1679979 1679612 ID=cds.MS.gene058074.t1;Parent=MS.gene058074.t1
chr5.1 exon 1681626 1681791 1681626 ID=MS.gene058074.t1.exon2;Parent=MS.gene058074.t1
chr5.1 CDS 1681626 1681791 1681626 ID=cds.MS.gene058074.t1;Parent=MS.gene058074.t1
chr5.1 exon 1682067 1682243 1682067 ID=MS.gene058074.t1.exon3;Parent=MS.gene058074.t1
chr5.1 CDS 1682067 1682243 1682067 ID=cds.MS.gene058074.t1;Parent=MS.gene058074.t1
chr5.1 exon 1682319 1682402 1682319 ID=MS.gene058074.t1.exon4;Parent=MS.gene058074.t1
chr5.1 CDS 1682319 1682402 1682319 ID=cds.MS.gene058074.t1;Parent=MS.gene058074.t1
chr5.1 exon 1682751 1682832 1682751 ID=MS.gene058074.t1.exon5;Parent=MS.gene058074.t1
chr5.1 CDS 1682751 1682832 1682751 ID=cds.MS.gene058074.t1;Parent=MS.gene058074.t1
chr5.1 exon 1682926 1683359 1682926 ID=MS.gene058074.t1.exon6;Parent=MS.gene058074.t1
chr5.1 CDS 1682926 1683359 1682926 ID=cds.MS.gene058074.t1;Parent=MS.gene058074.t1
Gene Sequence

>MS.gene058074

ATGGAGGATTATTTATTCGATGTTATGGAGTTTATGAAGAAACCTTCAATAACGGAAACATTCGTCGATATTTTGCTATGTGCGGTTCCGATTTGGCTTGCGGTCATGATCGGTTTGGTGATCGGTTGGTCATGGCGTCCACGGTGGACCGGACTTCTCTTCATCGGTCTTCGGAGCAAGTTTCGTTTCTTATGGACGGTTCCGCCGGGATTCGGTGCTCGCCGTCTCTGGTTAGCGTTCACCGCTCTTTCTGCTTTCTCTATTTGTCGCAGATATTGGTCTAATTTCAAAAATAAGGAGAAAGTGCTGGATCCTTCTTCCAATTCGTGTTCTGATGACGCCACCGACGCTACCAAACACGCTTCTCGGTAATTCACTACATTATTTTTGGTTTCAATTCAAGTTATTAGGGTTTTTTTTTTTTTTATTATTGAAATTTATCTGGTTTATTGAAATATTGAAATATATATAATGTATCAGGTGTGTCTAGTATTGACATGTGATGGTTGATTTTTCATATACTTTTTCAGCATTTTTAGGAACTGGTTTATATGTGTGGTAAGATTAGACAGAATACAATTATAAATGAGAACATTAGAGAGATAGAGAGAGTTGGGGTAGAACTTATAGTAGAAAATATGGTACAAACTAGACTTAGGTGGTTTGGGCATGTAGAGAGATAACCTTTGGATTCTGTAGTAAAGAGAGTAGATCAGATAAATGGAGTCAAATCACTAGAGGTAGAGAATCTATTAAGAAGGATCTAGAGATTAATGAGTTGGATAAAGACATGGTTTTTGATATAACACTATGGCGTTGTTTAATTGATGCAGCTGACCCTGTTTAGTGGGATAAAACTTGATTTTTATTGTTGTTGTTAAGGAACTGGTTTTCTACATGTATGAATTAGTTTAGAGTTTAGACTATATATAATTTTGTTGGGTTAAGGATAGAGAGATATTTTAGTTGCTATCTTGCGCATCTCATTTTTTACTTCGCTGCCTTTTAGGCTTTGTTTGAGAGTTTGAAGGGGAGGGTGAGGGCTTTGGGGGGAGAGGAATAGAGGATAAAATAGAGAAATCTTCCACATTTTTGAAAGAGTGTTTTTAATATTGAGATTTGAGAATATTACAACAACATAGATTGAATTTGAAGATTTCGAAATCTTTCTCCAATACAATGTTTGAGTTCCTTCAAAGTAGGGGGATTTTGAATTATGAAAAAAAACCTTCCAAAGCCCTCCCATTCCGAAGTCTTCTATTCCTTCCACCTGCTTCTTCCTTTTTTCCAAAGCCCTCCCCTCCCTTCCCTTCCAAATTTGCAAACAAAGCCTTAGGGTCTGTTTGAGAGTTTAGGAAGGGAGGACTTTGAAAGAAAGGAAGGATGAAGTGGAAGGAATGAAGGGTTTTGAGAGGGGAGGGCTTTGGGGAATTGATTTTTCTTCGTGATACAAAATACCCTAATTTGGAGGAACTCAAAAATTGTATCACAACTGGATTTTGGAGGGTTTTGGTGTGGCTTGGATAAATTTTTCAATTCCAATCTATGTTGTTATAATACTCTCAATATTAAAAATATATTAATCATAAACATTCATTTATCATTCTCTAAAAAAATACTCTCAAAAAAGTTGAAAGATTTATTTATTTTTTCCCCTCTAATCTCCCCTCCAAACTCCCAAACCAAGCCTTAGAGTATGGTTGCAGCATTGATAATCTTGTAGTAGTTTGTTATGATTTTTCTACTTGGCACTTTACGTTCGCCGTGATTCTATGTGTAGGATCTTTTTCCAATTTCTTCTGTGTGTCTAATTTCCTTAAATATGACAATCAGCTTCTTTTTACTGTAACATGGATTTCATAAATGCGCACAAACATTAATTATCAAATTGATGTTCCTATGTAAGTGGTCACTTCTAGTTCCTGGATGGTTGTTTGATATATTATACTGTATTTCTAGCGGAAGAATGAAGCGTTTTATTCATTTTGGAACTTGGTTATTGCACATACATTAGGTCCGGTGATATGGCTGACGAGAGAGACAAGGATACAGTTACAGAGGCTGATTTGGAACATCTTCTTCATCTTCTTGAAGGGAAAGATGGAGAGATTGACTGGCAAAGTTTTATGGAAAGGTCAACACCAAATATGCAATACAAAGCTTGGCGTTATGACTCTGAGGTAGATTTTGATGTTCAATTTTCATCTTGTGCGGATATTGTCTGTAATCTGGCAAAAAAATAACAACGCATGTTACAAATAAATAATTTTTTTTGGATATCCTTTCTATTTGAGGCACTTTTACTTCCTAGTTTAAAGTGGATTTATGTGAGTTATCTATATTCCATATTTGACACCCAAAAGGCTCATTACATAGTCATCATCTATGTTGATGATTATTTCTCTTTGTAGTTTGACTAAAATAAATCAGCATCTGATCTTGGAGCTTTTAACAGACAGGGGCTACAGTTTACCGTAGTAGAACTGTATTTGAAGATGCAACTCCTGAGTTAGTGAGGGATTTCTTCTGGGATGATGATTTTCGTCCCAAATGGGATCCTATGCTCGCACACTGCAAAGTGTTGGAGGAATGCCCTCATAATGGGACATCAATTGTTCACTGGATTAAAAAGGTATTTAAACCAAATAAATAGTTAATGTTGTATTTAATGTACACTGACATGGTTCACTTACTTTTCTATCCATAGTTCCCCTTTTTCTGCAGTGATCGGGAATATATTATTGCTCGAAGGATTTGGCAGGCTGGAAATGCATACTACTGTGTGACAAAGGTATGACTATGAGTTGTGACATAATTCATGCAATTTTGTGACATTTTATCTCGTTTCTTTCCCAATGGCTAGCCTCCATTCTTCTGTCACTAGAAAAGAAAATCTTGTTAATCTGAAGGCACTAACAGCGAAAGTTTCAATTTATCACTAGAAACATTTGAGCTTAAATTGTCATGCTAAGAATTTGTTAATACGAGTTTGCTATCACTCGACCCTGTTTCTTATATTTCTTTTTGTAGCCAATCTAATTTTTCATAAACCTGTGTATGTGTTGTCAGAAAAGACAATTCATATCTGATTATACAGTGTAAACGTAAGGTTTTTACTATTTAATCTTCAATGTTGTAGGGGGTTCCCTATCCAAGTTTGCCAAAACGCGATAAGCCCAGACGCGTAGACCTCTACTTTTCTAGTTGGGTAATCAAACCTGGTAAGAAATAGGCAAAGTTCATTCTTATTTGCTTGTTAGCATCAACTATTTAATAATGGCGTTTTAACAATTGAGTGTGCGAAATTGATGCAGTGGAATCTCGCAAAGGAGATGGGCAGTTGTCTGCATGCGAGGTTACCCTTTTGCATCACGAAGACATGGGGATTCCAAAAGATGTTGCAAAGTTAGGAGTTCGCCATGGAATGTGGGGAGCTGTCAAGAAATTGCACTCTGGTATGAGAGCATACCAGAATGCTAGGAAAACAGATGCTTCTTTGTCGAGATGTGCGTTGATGGCAAGTAAAACAACCAGGCTTTCTTCTAATGGAAACTTGCATTCGTTAGAGGATGCGTCTTTGATGGAAGAGAGGGAGCAAGCCATCAACAATGCCCGACAGATTGGTCACGGCCTGGATTGGAAGTGGGTGGCCTTAGGTGGGACTGTTGCTGTGGTTTTGGGTATACACAGTGGTGCAGTAGGGCGAGCATTGTTGTTGGGAGCAGGGCATAGATTTGCACGGAGATGA

Protein sequence

>MS.gene058074.t1

MEDYLFDVMEFMKKPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLLFIGLRSKFRFLWTVPPGFGARRLWLAFTALSAFSICRRYWSNFKNKEKVLDPSSNSCSDDATDATKHASRSGDMADERDKDTVTEADLEHLLHLLEGKDGEIDWQSFMERSTPNMQYKAWRYDSETGATVYRSRTVFEDATPELVRDFFWDDDFRPKWDPMLAHCKVLEECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQAGNAYYCVTKGVPYPSLPKRDKPRRVDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDMGIPKDVAKLGVRHGMWGAVKKLHSGMRAYQNARKTDASLSRCALMASKTTRLSSNGNLHSLEDASLMEEREQAINNARQIGHGLDWKWVALGGTVAVVLGIHSGAVGRALLLGAGHRFARR