Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067219.t1 | XP_013445314.1 | 98.6 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 6.00E-167 | 596.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067219.t1 | Q9QWZ1 | 26.7 | 303 | 181 | 12 | 1 | 293 | 4 | 275 | 2.5e-20 | 100.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067219.t1 | A0A072U0N1 | 98.6 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 4.4e-167 | 596.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052242 | MS.gene067219 | -0.800247 | 1.58E-48 | -1.69E-46 |
MS.gene057452 | MS.gene067219 | -0.81301 | 3.18E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067219.t1 | MTR_8g447310 | 98.649 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 0.0 | 610 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067219.t1 | AT4G17760 | 71.331 | 293 | 83 | 1 | 4 | 296 | 9 | 300 | 1.83e-164 | 459 |
MS.gene067219.t1 | AT4G17760 | 69.892 | 186 | 55 | 1 | 111 | 296 | 1 | 185 | 4.78e-95 | 278 |
Find 68 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTCCCATGCAACGGTTTC+AGG | 0.162062 | 8.1:-58676853 | None:intergenic |
CCCTTTGACCTTTACTGTTC+AGG | 0.268886 | 8.1:+58676900 | MS.gene067219:CDS |
TCTGATCTCTGCACAAATAC+TGG | 0.365082 | 8.1:-58676821 | None:intergenic |
TTGAGGAGAAGCTGCATATC+AGG | 0.368769 | 8.1:-58674562 | None:intergenic |
GATCTGGCTCCATAGTTATC+TGG | 0.370914 | 8.1:-58677752 | None:intergenic |
GCAGAAGGACGACCTCGTTT+TGG | 0.381089 | 8.1:+58674454 | MS.gene067219:CDS |
TCCAGTTCGCATAGAACGTC+TGG | 0.414965 | 8.1:-58674179 | None:intergenic |
GATTAAAACGATGCCGTGTT+CGG | 0.422134 | 8.1:-58674276 | None:intergenic |
ATCAAGCATCCAGATAACTA+TGG | 0.424375 | 8.1:+58677743 | MS.gene067219:CDS |
ATTTAGTCTTCACTTTCCTC+AGG | 0.432864 | 8.1:-58678298 | None:intergenic |
GCCTTAGTCTGCAGCACTAA+AGG | 0.450575 | 8.1:+58677692 | MS.gene067219:intron |
CATCCCGACCATGTCAGAAA+TGG | 0.450961 | 8.1:+58674145 | None:intergenic |
AGAGCAAGCAAGTTAAGCAT+TGG | 0.453888 | 8.1:+58678151 | MS.gene067219:CDS |
AATGTAACAGAAGGAGGATC+TGG | 0.473691 | 8.1:-58677768 | None:intergenic |
GAGCAAGCAAGTTAAGCATT+GGG | 0.475187 | 8.1:+58678152 | MS.gene067219:CDS |
TTCTTCGTCCATTTCTGACA+TGG | 0.475461 | 8.1:-58674153 | None:intergenic |
AATGTTAAAAGTGCAGCATC+TGG | 0.477607 | 8.1:+58678183 | MS.gene067219:CDS |
CTTCAGATCTGTAGATTCGC+TGG | 0.480426 | 8.1:+58676795 | MS.gene067219:intron |
ATAAGCGTGAGAGGTAGGTT+TGG | 0.486372 | 8.1:-58678215 | None:intergenic |
GTTATTCAGATTCAATATCC+TGG | 0.487642 | 8.1:+58674538 | MS.gene067219:CDS |
GTTCTATGACGGCGTCTTGG+TGG | 0.496782 | 8.1:-58674250 | None:intergenic |
CCTGAACAGTAAAGGTCAAA+GGG | 0.505595 | 8.1:-58676900 | None:intergenic |
CTGAAATGCTACCAAGAGTT+CGG | 0.505766 | 8.1:-58677942 | None:intergenic |
ATTGAGGATCTTGAATGGCC+TGG | 0.506692 | 8.1:+58677720 | MS.gene067219:CDS |
TGAAGGACATGGGGACCTGC+AGG | 0.506864 | 8.1:+58677797 | MS.gene067219:CDS |
TAGCATTTCAGTGTGATCAC+CGG | 0.508883 | 8.1:+58677954 | MS.gene067219:CDS |
ACCAGACGTTCTATGCGAAC+TGG | 0.510099 | 8.1:+58674178 | MS.gene067219:CDS |
GTTATCTGGATGCTTGATCC+AGG | 0.519897 | 8.1:-58677738 | None:intergenic |
ATGGCATACCTGAACAGTAA+AGG | 0.520495 | 8.1:-58676908 | None:intergenic |
CACGCTTATGTCGATTCTGC+CGG | 0.524198 | 8.1:+58678229 | MS.gene067219:CDS |
AAGTGGTTGTCTTCAAGCAA+AGG | 0.524384 | 8.1:+58674307 | MS.gene067219:CDS |
TCGACCAGGTTGCTGATAGC+CGG | 0.525487 | 8.1:-58678248 | None:intergenic |
AGCACTAAAGGAAGCTATTG+AGG | 0.528126 | 8.1:+58677704 | MS.gene067219:CDS |
ACGCTCTAACCGCCGTTCGA+TGG | 0.529777 | 8.1:+58674222 | MS.gene067219:CDS |
ACCTGAACAGTAAAGGTCAA+AGG | 0.531404 | 8.1:-58676901 | None:intergenic |
ACATTGAGAGCTGAAGGACA+TGG | 0.533667 | 8.1:+58677786 | MS.gene067219:CDS |
GTCAAAGGGTTAGTCCCAGC+AGG | 0.538849 | 8.1:-58676886 | None:intergenic |
AGAGTTCTATGACGGCGTCT+TGG | 0.544782 | 8.1:-58674253 | None:intergenic |
GATTCCTGAAACCGTTGCAT+GGG | 0.550720 | 8.1:+58676849 | MS.gene067219:CDS |
GGATTCCTGAAACCGTTGCA+TGG | 0.552682 | 8.1:+58676848 | MS.gene067219:CDS |
TTGTGCGAATTCCGAACTCT+TGG | 0.553644 | 8.1:+58677931 | MS.gene067219:CDS |
TCTGTTACATTGAGAGCTGA+AGG | 0.555436 | 8.1:+58677780 | MS.gene067219:CDS |
TTGGTGGCGCTTCCATCGAA+CGG | 0.556421 | 8.1:-58674234 | None:intergenic |
TGCGAACTGGAAAACGTACA+AGG | 0.564049 | 8.1:+58674191 | MS.gene067219:CDS |
AGCATTTCAGTGTGATCACC+GGG | 0.564504 | 8.1:+58677955 | MS.gene067219:CDS |
TCGACATAAGCGTGAGAGGT+AGG | 0.565313 | 8.1:-58678220 | None:intergenic |
AAGCTATTGAGGATCTTGAA+TGG | 0.582081 | 8.1:+58677715 | MS.gene067219:CDS |
ATTAATACTTGAAAGAAGCC+CGG | 0.583729 | 8.1:-58677973 | None:intergenic |
CATTGAGAGCTGAAGGACAT+GGG | 0.592060 | 8.1:+58677787 | MS.gene067219:CDS |
TGAATTCTTTGTGAAACCTG+AGG | 0.592342 | 8.1:+58678282 | MS.gene067219:CDS |
GTCATAGAACTCTCCGAACA+CGG | 0.593745 | 8.1:+58674263 | MS.gene067219:CDS |
AGCAAGTTAAGCATTGGGAG+AGG | 0.601192 | 8.1:+58678157 | MS.gene067219:CDS |
GCTCTCAATGTAACAGAAGG+AGG | 0.601673 | 8.1:-58677774 | None:intergenic |
TCAATATGAGCTATTCGACC+AGG | 0.602194 | 8.1:-58678262 | None:intergenic |
CGATATGATTACAATGCAGA+AGG | 0.602790 | 8.1:+58674439 | MS.gene067219:CDS |
TCAGCTCTCAATGTAACAGA+AGG | 0.603298 | 8.1:-58677777 | None:intergenic |
AGAAGCTGCATATCAGGACC+AGG | 0.605824 | 8.1:-58674556 | None:intergenic |
AAAATTGTAGTCCCATGCAA+CGG | 0.611318 | 8.1:-58676860 | None:intergenic |
AGAATCGACATAAGCGTGAG+AGG | 0.616523 | 8.1:-58678224 | None:intergenic |
AAGTTAAGCATTGGGAGAGG+TGG | 0.624290 | 8.1:+58678160 | MS.gene067219:CDS |
GTGTTCGGAGAGTTCTATGA+CGG | 0.640641 | 8.1:-58674261 | None:intergenic |
GTGGCGCTTCCATCGAACGG+CGG | 0.657652 | 8.1:-58674231 | None:intergenic |
TATTAGAAGTTGATGCTCTG+AGG | 0.660938 | 8.1:-58678102 | None:intergenic |
TCTGCCGGCTATCAGCAACC+TGG | 0.662037 | 8.1:+58678244 | MS.gene067219:CDS |
TGAATAACACCAGAATGACC+AGG | 0.667670 | 8.1:-58674523 | None:intergenic |
CCTAAACTCACACCAAAACG+AGG | 0.678815 | 8.1:-58674466 | None:intergenic |
ATTGAGAGCTGAAGGACATG+GGG | 0.686071 | 8.1:+58677788 | MS.gene067219:CDS |
TTTGTGCAGAGATCAGAACA+AGG | 0.733824 | 8.1:+58676827 | MS.gene067219:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACCAAAATGAAATAAAATAT+TGG | + | chr8.1:58675595-58675614 | MS.gene067219:intron | 15.0% |
!! | ATAAAACAAATATGATATAG+AGG | - | chr8.1:58675910-58675929 | None:intergenic | 15.0% |
!! | ATAAAGAAATTTAAATTCTG+TGG | - | chr8.1:58676683-58676702 | None:intergenic | 15.0% |
!! | TGTTAAATATAAAGTAGTTT+CGG | + | chr8.1:58675187-58675206 | MS.gene067219:intron | 15.0% |
!!! | TATATTTTGTGTATTTGAAT+GGG | - | chr8.1:58674625-58674644 | None:intergenic | 15.0% |
!! | AATATAATGAATTCAAAGTG+CGG | - | chr8.1:58677870-58677889 | None:intergenic | 20.0% |
!! | AATGAAATAAAATATTGGCA+AGG | + | chr8.1:58675600-58675619 | MS.gene067219:intron | 20.0% |
!! | ACTGTTAGATTAAAATTGTA+AGG | - | chr8.1:58675372-58675391 | None:intergenic | 20.0% |
!! | AGTAAGAAAATTGAAGAAAT+TGG | - | chr8.1:58674353-58674372 | None:intergenic | 20.0% |
!!! | AACCATAGAATCATTTTAAT+TGG | + | chr8.1:58677632-58677651 | MS.gene067219:intron | 20.0% |
!!! | ACCATAGAATCATTTTAATT+GGG | + | chr8.1:58677633-58677652 | MS.gene067219:intron | 20.0% |
!!! | AGCTATAAATGACAATTTTA+TGG | - | chr8.1:58676196-58676215 | None:intergenic | 20.0% |
!!! | AGTATATTGTTTTTACTCTT+TGG | - | chr8.1:58675983-58676002 | None:intergenic | 20.0% |
!!! | CTATATTTTGTGTATTTGAA+TGG | - | chr8.1:58674626-58674645 | None:intergenic | 20.0% |
!!! | GCCAATATTTTATTTCATTT+TGG | - | chr8.1:58675599-58675618 | None:intergenic | 20.0% |
!!! | GTATATTGTTTTTACTCTTT+GGG | - | chr8.1:58675982-58676001 | None:intergenic | 20.0% |
!!! | TAAATCCAAAATTTTGTAGA+GGG | - | chr8.1:58677032-58677051 | None:intergenic | 20.0% |
!!! | TATAAGTTTTACTAAAACCA+CGG | - | chr8.1:58674711-58674730 | None:intergenic | 20.0% |
!!! | TTAAATCCAAAATTTTGTAG+AGG | - | chr8.1:58677033-58677052 | None:intergenic | 20.0% |
! | AAAGGTTTATCTCAAAAAAG+AGG | + | chr8.1:58674325-58674344 | MS.gene067219:CDS | 25.0% |
! | AAGGATCTATATGTTGAATT+AGG | + | chr8.1:58675530-58675549 | MS.gene067219:intron | 25.0% |
! | ACTAGTAACCAGTAATATAA+TGG | - | chr8.1:58677129-58677148 | None:intergenic | 25.0% |
! | ACTTATTTGAGCTTATCTAT+TGG | - | chr8.1:58675031-58675050 | None:intergenic | 25.0% |
! | ATATAGATCCTTATTGGAAA+TGG | - | chr8.1:58675522-58675541 | None:intergenic | 25.0% |
! | CCAAATTAATGGTCATTTAT+TGG | + | chr8.1:58676750-58676769 | MS.gene067219:intron | 25.0% |
! | CCAATAAATGACCATTAATT+TGG | - | chr8.1:58676753-58676772 | None:intergenic | 25.0% |
! | GAAAACTAATTAGATGTAGA+AGG | - | chr8.1:58676546-58676565 | None:intergenic | 25.0% |
! | GAAATCCAATTAGAATTTGT+CGG | + | chr8.1:58676616-58676635 | MS.gene067219:intron | 25.0% |
! | TCATTCAACCATTATATTAC+TGG | + | chr8.1:58677118-58677137 | MS.gene067219:intron | 25.0% |
! | TCCCAATTAAAATGATTCTA+TGG | - | chr8.1:58677637-58677656 | None:intergenic | 25.0% |
! | TTAATGTGATAGTTCAATGA+TGG | + | chr8.1:58677049-58677068 | MS.gene067219:intron | 25.0% |
! | TTCAACATATAGATCCTTAT+TGG | - | chr8.1:58675528-58675547 | None:intergenic | 25.0% |
! | TTGCCTATAGTATATTGAAA+TGG | - | chr8.1:58675742-58675761 | None:intergenic | 25.0% |
!! | CAAACAACTTTTCATATAAG+TGG | + | chr8.1:58677514-58677533 | MS.gene067219:intron | 25.0% |
!! | CTTTATCAAGTAAGAACTTT+TGG | + | chr8.1:58676697-58676716 | MS.gene067219:intron | 25.0% |
!!! | ACTACATTTTTATTTCACTG+TGG | + | chr8.1:58674648-58674667 | MS.gene067219:intron | 25.0% |
!!! | ATGATTTGCTTTATTATCTG+AGG | + | chr8.1:58675931-58675950 | MS.gene067219:intron | 25.0% |
!!! | GCTATTTTCAAAAGCTATTT+TGG | + | chr8.1:58674915-58674934 | MS.gene067219:intron | 25.0% |
!!! | TTTTCTTTGATAACACTACT+AGG | - | chr8.1:58678130-58678149 | None:intergenic | 25.0% |
AAACATGCCCTTAGTATATT+TGG | + | chr8.1:58675057-58675076 | MS.gene067219:intron | 30.0% | |
AAGTTCCGACAAATTCTAAT+TGG | - | chr8.1:58676624-58676643 | None:intergenic | 30.0% | |
AATAATGACCTAGTATCCTT+TGG | + | chr8.1:58676955-58676974 | MS.gene067219:intron | 30.0% | |
AGATGTAATTCCTTTCAGAA+TGG | + | chr8.1:58676724-58676743 | MS.gene067219:intron | 30.0% | |
ATTAATACTTGAAAGAAGCC+CGG | - | chr8.1:58677976-58677995 | None:intergenic | 30.0% | |
ATTTCTTGATACTCGATATC+AGG | - | chr8.1:58676448-58676467 | None:intergenic | 30.0% | |
CACAGTTCCAAATATACTAA+GGG | - | chr8.1:58675067-58675086 | None:intergenic | 30.0% | |
CACTGCTTACTATATAAGAA+TGG | - | chr8.1:58676157-58676176 | None:intergenic | 30.0% | |
CTATCAGTGTTGTCAAATAT+TGG | - | chr8.1:58676311-58676330 | None:intergenic | 30.0% | |
CTTCATTGATAGGTATTTAG+AGG | - | chr8.1:58676420-58676439 | None:intergenic | 30.0% | |
GAATTTGTGACTGTCATAAA+TGG | - | chr8.1:58676476-58676495 | None:intergenic | 30.0% | |
GTTATTCAGATTCAATATCC+TGG | + | chr8.1:58674538-58674557 | MS.gene067219:CDS | 30.0% | |
TATAGTAAGCAGTGTATTGA+TGG | + | chr8.1:58676163-58676182 | MS.gene067219:intron | 30.0% | |
TGAACTGTCTGATTAAGTTT+AGG | + | chr8.1:58675322-58675341 | MS.gene067219:intron | 30.0% | |
TTTCTTGATACTCGATATCA+GGG | - | chr8.1:58676447-58676466 | None:intergenic | 30.0% | |
! | ATTTGAAATTTGAGCCAAAC+TGG | + | chr8.1:58677670-58677689 | MS.gene067219:intron | 30.0% |
! | CTGCCATTTCAATATACTAT+AGG | + | chr8.1:58675736-58675755 | MS.gene067219:intron | 30.0% |
! | GAAAAACTGTTGCTTGTATA+CGG | + | chr8.1:58677380-58677399 | MS.gene067219:intron | 30.0% |
! | GATAGTTCAATGATGGAAAT+TGG | + | chr8.1:58677056-58677075 | MS.gene067219:intron | 30.0% |
! | TATTTGGAATGACAGTAAGT+AGG | - | chr8.1:58674776-58674795 | None:intergenic | 30.0% |
! | TGAGTGTTTAGAACCAAAAT+AGG | - | chr8.1:58675159-58675178 | None:intergenic | 30.0% |
!! | ATTTTTCAACTACTCATGTG+TGG | - | chr8.1:58676374-58676393 | None:intergenic | 30.0% |
!! | GTTTTAATCGTTGAAGAAAG+TGG | + | chr8.1:58674290-58674309 | MS.gene067219:CDS | 30.0% |
!! | TTTACTCTTTGGGTTGATAT+AGG | - | chr8.1:58675972-58675991 | None:intergenic | 30.0% |
AAAATTGTAGTCCCATGCAA+CGG | - | chr8.1:58676863-58676882 | None:intergenic | 35.0% | |
AAGCTATTGAGGATCTTGAA+TGG | + | chr8.1:58677715-58677734 | MS.gene067219:CDS | 35.0% | |
AATAAGCCGTTTATCCAAAC+AGG | - | chr8.1:58674810-58674829 | None:intergenic | 35.0% | |
AATCTACAGATCTGAAGATG+TGG | - | chr8.1:58676792-58676811 | None:intergenic | 35.0% | |
AATTACACCTAGAGCTAGTT+TGG | + | chr8.1:58677425-58677444 | MS.gene067219:intron | 35.0% | |
AATTTGGCTACCATTCTGAA+AGG | - | chr8.1:58676737-58676756 | None:intergenic | 35.0% | |
ATAAGCCGTTTATCCAAACA+GGG | - | chr8.1:58674809-58674828 | None:intergenic | 35.0% | |
ATAGGTAACCAAGCAACTAA+CGG | - | chr8.1:58675141-58675160 | None:intergenic | 35.0% | |
ATCAAGCATCCAGATAACTA+TGG | + | chr8.1:58677743-58677762 | MS.gene067219:CDS | 35.0% | |
CAGAATGGTAGCCAAATTAA+TGG | + | chr8.1:58676739-58676758 | MS.gene067219:intron | 35.0% | |
CAGCTTATGTACAATGTCAT+AGG | + | chr8.1:58674963-58674982 | MS.gene067219:intron | 35.0% | |
CATGCTTTCCATTTCCAATA+AGG | + | chr8.1:58675511-58675530 | MS.gene067219:intron | 35.0% | |
CATTAATAGAAGGGTCTACA+AGG | - | chr8.1:58676065-58676084 | None:intergenic | 35.0% | |
CCACAGTTCCAAATATACTA+AGG | - | chr8.1:58675068-58675087 | None:intergenic | 35.0% | |
CGATATGATTACAATGCAGA+AGG | + | chr8.1:58674439-58674458 | MS.gene067219:CDS | 35.0% | |
CGGGCAAAACATTAATAGAA+GGG | - | chr8.1:58676074-58676093 | None:intergenic | 35.0% | |
CTGTGCAGTAAAAAATTTGG+AGG | + | chr8.1:58677221-58677240 | MS.gene067219:intron | 35.0% | |
GTATTGCTTTCGACTCAAAT+GGG | + | chr8.1:58677823-58677842 | MS.gene067219:intron | 35.0% | |
GTGCTGTGCAGTAAAAAATT+TGG | + | chr8.1:58677218-58677237 | MS.gene067219:intron | 35.0% | |
TAAGTTCTGTGAGACTGTTT+AGG | - | chr8.1:58675006-58675025 | None:intergenic | 35.0% | |
TAATGTACGAGAAGTGAGAA+AGG | - | chr8.1:58676102-58676121 | None:intergenic | 35.0% | |
TCGTTGCTTATGGTTATAAC+AGG | + | chr8.1:58678065-58678084 | MS.gene067219:intron | 35.0% | |
TGAATGATTGCGTGAATGTA+GGG | + | chr8.1:58675397-58675416 | MS.gene067219:intron | 35.0% | |
TGAATTCTTTGTGAAACCTG+AGG | + | chr8.1:58678282-58678301 | MS.gene067219:CDS | 35.0% | |
TGACAGTTAGAACATACTTG+AGG | - | chr8.1:58674582-58674601 | None:intergenic | 35.0% | |
TGCGTACATGACATTCAATA+TGG | + | chr8.1:58675469-58675488 | MS.gene067219:intron | 35.0% | |
TGTATTGCTTTCGACTCAAA+TGG | + | chr8.1:58677822-58677841 | MS.gene067219:intron | 35.0% | |
TTAAGCCCTGTTTGGATAAA+CGG | + | chr8.1:58674801-58674820 | MS.gene067219:intron | 35.0% | |
TTTCTCACTTCTCGTACATT+AGG | + | chr8.1:58676101-58676120 | MS.gene067219:intron | 35.0% | |
! | AATGTTAAAAGTGCAGCATC+TGG | + | chr8.1:58678183-58678202 | MS.gene067219:CDS | 35.0% |
! | AATTTGACTTAAACCGTGAC+AGG | - | chr8.1:58676509-58676528 | None:intergenic | 35.0% |
! | ACTACAATTTTGAACCTGCT+GGG | + | chr8.1:58676872-58676891 | MS.gene067219:CDS | 35.0% |
! | AGTTGCTTGGTTACCTATTT+TGG | + | chr8.1:58675143-58675162 | MS.gene067219:intron | 35.0% |
! | AGTTTATCCAAACTAGCTCT+AGG | - | chr8.1:58677435-58677454 | None:intergenic | 35.0% |
! | ATCTGTCATTTCGTTGCTTA+TGG | + | chr8.1:58678055-58678074 | MS.gene067219:intron | 35.0% |
! | CCTTAGTATATTTGGAACTG+TGG | + | chr8.1:58675065-58675084 | MS.gene067219:intron | 35.0% |
! | GTGTTTATAGGGAAGGTTTT+TGG | + | chr8.1:58675808-58675827 | MS.gene067219:intron | 35.0% |
! | GTTTAGGCGATTTGAAATGT+TGG | + | chr8.1:58675338-58675357 | MS.gene067219:intron | 35.0% |
! | TGATTGTTTGAACGCGTTTT+CGG | + | chr8.1:58674498-58674517 | MS.gene067219:CDS | 35.0% |
! | TGCAACGGTAGAGAATTTTA+TGG | - | chr8.1:58676930-58676949 | None:intergenic | 35.0% |
!! | TATTAGAAGTTGATGCTCTG+AGG | - | chr8.1:58678105-58678124 | None:intergenic | 35.0% |
!!! | AGATTTTTTGAGAACTGCCA+TGG | - | chr8.1:58676268-58676287 | None:intergenic | 35.0% |
AACGACATCCAAAGGATACT+AGG | - | chr8.1:58676966-58676985 | None:intergenic | 40.0% | |
AAGTGGTTGTCTTCAAGCAA+AGG | + | chr8.1:58674307-58674326 | MS.gene067219:CDS | 40.0% | |
AATCCCCATGAATTTGTAGC+TGG | + | chr8.1:58675626-58675645 | MS.gene067219:intron | 40.0% | |
AATGTAACAGAAGGAGGATC+TGG | - | chr8.1:58677771-58677790 | None:intergenic | 40.0% | |
ACAGGGCTTAAGTGCATATT+TGG | - | chr8.1:58674792-58674811 | None:intergenic | 40.0% | |
ACATCTGCCATAAAACGTCA+GGG | + | chr8.1:58676219-58676238 | MS.gene067219:intron | 40.0% | |
ACCTGAACAGTAAAGGTCAA+AGG | - | chr8.1:58676904-58676923 | None:intergenic | 40.0% | |
AGCACTAAAGGAAGCTATTG+AGG | + | chr8.1:58677704-58677723 | MS.gene067219:CDS | 40.0% | |
ATAAGTCGATGGCTGGTAAA+TGG | - | chr8.1:58678037-58678056 | None:intergenic | 40.0% | |
ATATGCACTTAAGCCCTGTT+TGG | + | chr8.1:58674793-58674812 | MS.gene067219:intron | 40.0% | |
ATGGCATACCTGAACAGTAA+AGG | - | chr8.1:58676911-58676930 | None:intergenic | 40.0% | |
CATCCAGCTACAAATTCATG+GGG | - | chr8.1:58675632-58675651 | None:intergenic | 40.0% | |
CATTCACGCAATCATTCACT+TGG | - | chr8.1:58675395-58675414 | None:intergenic | 40.0% | |
CCTGAACAGTAAAGGTCAAA+GGG | - | chr8.1:58676903-58676922 | None:intergenic | 40.0% | |
CGAAATGACAGATAAGTCGA+TGG | - | chr8.1:58678048-58678067 | None:intergenic | 40.0% | |
CTGAAATGCTACCAAGAGTT+CGG | - | chr8.1:58677945-58677964 | None:intergenic | 40.0% | |
GAAAATCCAACGACATCCAA+AGG | - | chr8.1:58676974-58676993 | None:intergenic | 40.0% | |
GATTAAAACGATGCCGTGTT+CGG | - | chr8.1:58674279-58674298 | None:intergenic | 40.0% | |
GCATCCAGCTACAAATTCAT+GGG | - | chr8.1:58675633-58675652 | None:intergenic | 40.0% | |
GCGGGCAAAACATTAATAGA+AGG | - | chr8.1:58676075-58676094 | None:intergenic | 40.0% | |
GGTCATTATTCAAGCTGCAA+CGG | - | chr8.1:58676945-58676964 | None:intergenic | 40.0% | |
GTACACATCTGTACACAAGA+TGG | + | chr8.1:58675668-58675687 | MS.gene067219:intron | 40.0% | |
GTGAATGATTGCGTGAATGT+AGG | + | chr8.1:58675396-58675415 | MS.gene067219:intron | 40.0% | |
GTGTTGTCAAATATTGGCCA+TGG | - | chr8.1:58676305-58676324 | None:intergenic | 40.0% | |
TAGCATTTCAGTGTGATCAC+CGG | + | chr8.1:58677954-58677973 | MS.gene067219:CDS | 40.0% | |
TAGTATCCTTTGGATGTCGT+TGG | + | chr8.1:58676965-58676984 | MS.gene067219:intron | 40.0% | |
TAGTTGAGACTTGACAGGTT+TGG | + | chr8.1:58675553-58675572 | MS.gene067219:intron | 40.0% | |
TCAATATGAGCTATTCGACC+AGG | - | chr8.1:58678265-58678284 | None:intergenic | 40.0% | |
TCAGCTCTCAATGTAACAGA+AGG | - | chr8.1:58677780-58677799 | None:intergenic | 40.0% | |
TCAGGGTGATCTTCATTGAT+AGG | - | chr8.1:58676430-58676449 | None:intergenic | 40.0% | |
TCTGATCTCTGCACAAATAC+TGG | - | chr8.1:58676824-58676843 | None:intergenic | 40.0% | |
TCTGTTACATTGAGAGCTGA+AGG | + | chr8.1:58677780-58677799 | MS.gene067219:CDS | 40.0% | |
TGAATAACACCAGAATGACC+AGG | - | chr8.1:58674526-58674545 | None:intergenic | 40.0% | |
TGATTTCGTGTCTCGAGAAA+GGG | + | chr8.1:58675088-58675107 | MS.gene067219:intron | 40.0% | |
TGCATCCAGCTACAAATTCA+TGG | - | chr8.1:58675634-58675653 | None:intergenic | 40.0% | |
TGTCATGTACGCAACTTGTA+TGG | - | chr8.1:58675462-58675481 | None:intergenic | 40.0% | |
TTAGGTAGTTGAGACTTGAC+AGG | + | chr8.1:58675548-58675567 | MS.gene067219:intron | 40.0% | |
TTCTCCCATGTATCAATTGC+AGG | - | chr8.1:58677363-58677382 | None:intergenic | 40.0% | |
TTGTCAAATATTGGCCATGG+CGG | - | chr8.1:58676302-58676321 | None:intergenic | 40.0% | |
TTGTGATGAGACATCCATCA+TGG | + | chr8.1:58675763-58675782 | MS.gene067219:intron | 40.0% | |
TTTGTGCAGAGATCAGAACA+AGG | + | chr8.1:58676827-58676846 | MS.gene067219:CDS | 40.0% | |
! | ACTTGATGCAGTGTTGTTGA+TGG | - | chr8.1:58675858-58675877 | None:intergenic | 40.0% |
! | AGGGTCCCTCTACAAAATTT+TGG | + | chr8.1:58677024-58677043 | MS.gene067219:intron | 40.0% |
! | AGTAAGCAGTGTATTGATGG+CGG | + | chr8.1:58676166-58676185 | MS.gene067219:intron | 40.0% |
! | GACTACAATTTTGAACCTGC+TGG | + | chr8.1:58676871-58676890 | MS.gene067219:CDS | 40.0% |
! | TATTTCACTGTGGAGTGTCA+CGG | + | chr8.1:58674658-58674677 | MS.gene067219:intron | 40.0% |
!! | AGGAGCTTTGGGACTAAATT+TGG | - | chr8.1:58676045-58676064 | None:intergenic | 40.0% |
!! | CTCGTTTTGGTGTGAGTTTA+GGG | + | chr8.1:58674467-58674486 | MS.gene067219:CDS | 40.0% |
AACTAGATTCCCGATAGTCG+GGG | + | chr8.1:58675270-58675289 | MS.gene067219:intron | 45.0% | |
AAGCATGATTCCCCGACTAT+CGG | - | chr8.1:58675283-58675302 | None:intergenic | 45.0% | |
AAGGGTCTACAAGGAGCTTT+GGG | - | chr8.1:58676056-58676075 | None:intergenic | 45.0% | |
ACATTGAGAGCTGAAGGACA+TGG | + | chr8.1:58677786-58677805 | MS.gene067219:CDS | 45.0% | |
AGAATCGACATAAGCGTGAG+AGG | - | chr8.1:58678227-58678246 | None:intergenic | 45.0% | |
AGCATTTCAGTGTGATCACC+GGG | + | chr8.1:58677955-58677974 | MS.gene067219:CDS | 45.0% | |
ATAAGCGTGAGAGGTAGGTT+TGG | - | chr8.1:58678218-58678237 | None:intergenic | 45.0% | |
ATGACAGATAAGTCGATGGC+TGG | - | chr8.1:58678044-58678063 | None:intergenic | 45.0% | |
ATTGAGAGCTGAAGGACATG+GGG | + | chr8.1:58677788-58677807 | MS.gene067219:CDS | 45.0% | |
ATTGAGGATCTTGAATGGCC+TGG | + | chr8.1:58677720-58677739 | MS.gene067219:CDS | 45.0% | |
CAATGGCGTGTTTATAGGGA+AGG | + | chr8.1:58675801-58675820 | MS.gene067219:intron | 45.0% | |
CACATCTGCCATAAAACGTC+AGG | + | chr8.1:58676218-58676237 | MS.gene067219:intron | 45.0% | |
CACCACCATCCGTTACAAAT+TGG | + | chr8.1:58676242-58676261 | MS.gene067219:intron | 45.0% | |
CATCCGTTACAAATTGGCCA+TGG | + | chr8.1:58676248-58676267 | MS.gene067219:intron | 45.0% | |
CATTGAGAGCTGAAGGACAT+GGG | + | chr8.1:58677787-58677806 | MS.gene067219:CDS | 45.0% | |
CCCTTTGACCTTTACTGTTC+AGG | + | chr8.1:58676900-58676919 | MS.gene067219:CDS | 45.0% | |
CCTAAACTCACACCAAAACG+AGG | - | chr8.1:58674469-58674488 | None:intergenic | 45.0% | |
CGAAAGCAATACAAACCTGC+AGG | - | chr8.1:58677815-58677834 | None:intergenic | 45.0% | |
CGAACTAGATTCCCGATAGT+CGG | + | chr8.1:58675268-58675287 | MS.gene067219:intron | 45.0% | |
CGCACCTGCAATTGATACAT+GGG | + | chr8.1:58677356-58677375 | MS.gene067219:intron | 45.0% | |
CTACAGATCTGAAGATGTGG+AGG | - | chr8.1:58676789-58676808 | None:intergenic | 45.0% | |
CTGCCATGGCCAATTTGTAA+CGG | - | chr8.1:58676254-58676273 | None:intergenic | 45.0% | |
CTTCAGATCTGTAGATTCGC+TGG | + | chr8.1:58676795-58676814 | MS.gene067219:intron | 45.0% | |
GAACTAGATTCCCGATAGTC+GGG | + | chr8.1:58675269-58675288 | MS.gene067219:intron | 45.0% | |
GAGAAAGGGGAACTACAACT+TGG | + | chr8.1:58675102-58675121 | MS.gene067219:intron | 45.0% | |
GAGAAGTGAGAAAGGAAGTG+CGG | - | chr8.1:58676094-58676113 | None:intergenic | 45.0% | |
GATTCCTGAAACCGTTGCAT+GGG | + | chr8.1:58676849-58676868 | MS.gene067219:CDS | 45.0% | |
GATTTCGTGTCTCGAGAAAG+GGG | + | chr8.1:58675089-58675108 | MS.gene067219:intron | 45.0% | |
GCTCTCAATGTAACAGAAGG+AGG | - | chr8.1:58677777-58677796 | None:intergenic | 45.0% | |
GCTGCAATGGCGTGTTTATA+GGG | + | chr8.1:58675797-58675816 | MS.gene067219:intron | 45.0% | |
GTCATAGAACTCTCCGAACA+CGG | + | chr8.1:58674263-58674282 | MS.gene067219:CDS | 45.0% | |
GTGATTTCGTGTCTCGAGAA+AGG | + | chr8.1:58675087-58675106 | MS.gene067219:intron | 45.0% | |
GTGTTCGGAGAGTTCTATGA+CGG | - | chr8.1:58674264-58674283 | None:intergenic | 45.0% | |
GTTATCTGGATGCTTGATCC+AGG | - | chr8.1:58677741-58677760 | None:intergenic | 45.0% | |
TCCTTTAGTGCTGCAGACTA+AGG | - | chr8.1:58677696-58677715 | None:intergenic | 45.0% | |
TCGCACCTGCAATTGATACA+TGG | + | chr8.1:58677355-58677374 | MS.gene067219:intron | 45.0% | |
TGCGAACTGGAAAACGTACA+AGG | + | chr8.1:58674191-58674210 | MS.gene067219:CDS | 45.0% | |
TGTAGAAGGCTAGAAGCTGT+CGG | - | chr8.1:58676532-58676551 | None:intergenic | 45.0% | |
TTCCAACAGATTGCCTGTCA+CGG | + | chr8.1:58676493-58676512 | MS.gene067219:intron | 45.0% | |
TTGAGGAGAAGCTGCATATC+AGG | - | chr8.1:58674565-58674584 | None:intergenic | 45.0% | |
TTGTGCGAATTCCGAACTCT+TGG | + | chr8.1:58677931-58677950 | MS.gene067219:CDS | 45.0% | |
! | AATTTTGTAGAGGGACCCTG+AGG | - | chr8.1:58677023-58677042 | None:intergenic | 45.0% |
! | AGAAGTGAGAAAGGAAGTGC+GGG | - | chr8.1:58676093-58676112 | None:intergenic | 45.0% |
! | ATCGATTGCAAATGGCGGAA+TGG | + | chr8.1:58675706-58675725 | MS.gene067219:intron | 45.0% |
! | CATGGCCAATTTGTAACGGA+TGG | - | chr8.1:58676250-58676269 | None:intergenic | 45.0% |
! | CTGACGTTTTATGGCAGATG+TGG | - | chr8.1:58676220-58676239 | None:intergenic | 45.0% |
! | GATCTGGCTCCATAGTTATC+TGG | - | chr8.1:58677755-58677774 | None:intergenic | 45.0% |
! | GCAGCGTTATCGATTGCAAA+TGG | + | chr8.1:58675698-58675717 | MS.gene067219:intron | 45.0% |
! | GCGTTATCGATTGCAAATGG+CGG | + | chr8.1:58675701-58675720 | MS.gene067219:intron | 45.0% |
! | GGATGGTGAAATATGGTGGA+AGG | - | chr8.1:58675834-58675853 | None:intergenic | 45.0% |
! | TGATGCAGTGTTGTTGATGG+CGG | - | chr8.1:58675855-58675874 | None:intergenic | 45.0% |
! | TTTTCGGTTCCTGGTCATTC+TGG | + | chr8.1:58674514-58674533 | MS.gene067219:CDS | 45.0% |
!! | AAGTTAAGCATTGGGAGAGG+TGG | + | chr8.1:58678160-58678179 | MS.gene067219:CDS | 45.0% |
!! | AGCAAGTTAAGCATTGGGAG+AGG | + | chr8.1:58678157-58678176 | MS.gene067219:CDS | 45.0% |
!! | CCTCGTTTTGGTGTGAGTTT+AGG | + | chr8.1:58674466-58674485 | MS.gene067219:CDS | 45.0% |
!! | TGATGGCGGATGGTGAAATA+TGG | - | chr8.1:58675841-58675860 | None:intergenic | 45.0% |
AACCGTGACAGGCAATCTGT+TGG | - | chr8.1:58676498-58676517 | None:intergenic | 50.0% | |
ACCAGACGTTCTATGCGAAC+TGG | + | chr8.1:58674178-58674197 | MS.gene067219:CDS | 50.0% | |
AGAAGCTGCATATCAGGACC+AGG | - | chr8.1:58674559-58674578 | None:intergenic | 50.0% | |
AGAATCACGCTTTGTCACCG+TGG | + | chr8.1:58674691-58674710 | MS.gene067219:intron | 50.0% | |
AGAGTTCTATGACGGCGTCT+TGG | - | chr8.1:58674256-58674275 | None:intergenic | 50.0% | |
AGCATGATTCCCCGACTATC+GGG | - | chr8.1:58675282-58675301 | None:intergenic | 50.0% | |
ATCCATCATGGCTGCACGAT+AGG | + | chr8.1:58675775-58675794 | MS.gene067219:intron | 50.0% | |
CTGATCCACCGTTAGTTGCT+TGG | + | chr8.1:58675130-58675149 | MS.gene067219:intron | 50.0% | |
GAAGGGTCTACAAGGAGCTT+TGG | - | chr8.1:58676057-58676076 | None:intergenic | 50.0% | |
GCCTTAGTCTGCAGCACTAA+AGG | + | chr8.1:58677692-58677711 | MS.gene067219:intron | 50.0% | |
GGATTCCTGAAACCGTTGCA+TGG | + | chr8.1:58676848-58676867 | MS.gene067219:CDS | 50.0% | |
GGCTGCAATGGCGTGTTTAT+AGG | + | chr8.1:58675796-58675815 | MS.gene067219:intron | 50.0% | |
GGTAACCAAGCAACTAACGG+TGG | - | chr8.1:58675138-58675157 | None:intergenic | 50.0% | |
TAGTCCCATGCAACGGTTTC+AGG | - | chr8.1:58676856-58676875 | None:intergenic | 50.0% | |
TCCAGTTCGCATAGAACGTC+TGG | - | chr8.1:58674182-58674201 | None:intergenic | 50.0% | |
TCGACATAAGCGTGAGAGGT+AGG | - | chr8.1:58678223-58678242 | None:intergenic | 50.0% | |
! | TGGCGGATGGTGAAATATGG+TGG | - | chr8.1:58675838-58675857 | None:intergenic | 50.0% |
! | TTGAACGCGTTTTCGGTTCC+TGG | + | chr8.1:58674505-58674524 | MS.gene067219:CDS | 50.0% |
!! | ATATTGGCCATGGCGGATTG+TGG | - | chr8.1:58676295-58676314 | None:intergenic | 50.0% |
!! | CACGCTTATGTCGATTCTGC+CGG | + | chr8.1:58678229-58678248 | MS.gene067219:CDS | 50.0% |
!! | GGCCAATTTGTAACGGATGG+TGG | - | chr8.1:58676247-58676266 | None:intergenic | 50.0% |
AGCCTATCGTGCAGCCATGA+TGG | - | chr8.1:58675780-58675799 | None:intergenic | 55.0% | |
GCTGCAGACTAAGGCCAGTT+TGG | - | chr8.1:58677687-58677706 | None:intergenic | 55.0% | |
GTTCTATGACGGCGTCTTGG+TGG | - | chr8.1:58674253-58674272 | None:intergenic | 55.0% | |
TCGACCAGGTTGCTGATAGC+CGG | - | chr8.1:58678251-58678270 | None:intergenic | 55.0% | |
TTTGTAGAGGGACCCTGAGG+TGG | - | chr8.1:58677020-58677039 | None:intergenic | 55.0% | |
! | GCAGAAGGACGACCTCGTTT+TGG | + | chr8.1:58674454-58674473 | MS.gene067219:CDS | 55.0% |
! | GGTGGTGCCCTGACGTTTTA+TGG | - | chr8.1:58676229-58676248 | None:intergenic | 55.0% |
!! | GCAGTGTTGTTGATGGCGGA+TGG | - | chr8.1:58675851-58675870 | None:intergenic | 55.0% |
!! | GTCAAAGGGTTAGTCCCAGC+AGG | - | chr8.1:58676889-58676908 | None:intergenic | 55.0% |
!! | TTGGTGGCGCTTCCATCGAA+CGG | - | chr8.1:58674237-58674256 | None:intergenic | 55.0% |
ACGCTCTAACCGCCGTTCGA+TGG | + | chr8.1:58674222-58674241 | MS.gene067219:CDS | 60.0% | |
GGCTGCACGATAGGCTGCAA+TGG | + | chr8.1:58675784-58675803 | MS.gene067219:intron | 60.0% | |
TCTCCCACCACAATCCGCCA+TGG | + | chr8.1:58676285-58676304 | MS.gene067219:intron | 60.0% | |
TGAAGGACATGGGGACCTGC+AGG | + | chr8.1:58677797-58677816 | MS.gene067219:CDS | 60.0% | |
! | TCTGCCGGCTATCAGCAACC+TGG | + | chr8.1:58678244-58678263 | MS.gene067219:CDS | 60.0% |
!! | TGGCCATGGCGGATTGTGGT+GGG | - | chr8.1:58676291-58676310 | None:intergenic | 60.0% |
!! | TTGGCCATGGCGGATTGTGG+TGG | - | chr8.1:58676292-58676311 | None:intergenic | 60.0% |
GTAGAGGGACCCTGAGGTGG+CGG | - | chr8.1:58677017-58677036 | None:intergenic | 65.0% | |
GTGGCGCTTCCATCGAACGG+CGG | - | chr8.1:58674234-58674253 | None:intergenic | 65.0% | |
TAGAGGGACCCTGAGGTGGC+GGG | - | chr8.1:58677016-58677035 | None:intergenic | 65.0% | |
AGAGGGACCCTGAGGTGGCG+GGG | - | chr8.1:58677015-58677034 | None:intergenic | 70.0% | |
GCCAATCCCCCGCCACCTCA+GGG | + | chr8.1:58677005-58677024 | MS.gene067219:intron | 70.0% | |
TGCCAATCCCCCGCCACCTC+AGG | + | chr8.1:58677004-58677023 | MS.gene067219:intron | 70.0% | |
!! | ACCCTGAGGTGGCGGGGGAT+TGG | - | chr8.1:58677009-58677028 | None:intergenic | 70.0% |
! | GAGGGACCCTGAGGTGGCGG+GGG | - | chr8.1:58677014-58677033 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 58674155 | 58678318 | 58674155 | ID=MS.gene067219 |
chr8.1 | mRNA | 58674155 | 58678318 | 58674155 | ID=MS.gene067219.t1;Parent=MS.gene067219 |
chr8.1 | exon | 58674155 | 58674346 | 58674155 | ID=MS.gene067219.t1.exon1;Parent=MS.gene067219.t1 |
chr8.1 | CDS | 58674155 | 58674346 | 58674155 | ID=cds.MS.gene067219.t1;Parent=MS.gene067219.t1 |
chr8.1 | exon | 58674430 | 58674584 | 58674430 | ID=MS.gene067219.t1.exon2;Parent=MS.gene067219.t1 |
chr8.1 | CDS | 58674430 | 58674584 | 58674430 | ID=cds.MS.gene067219.t1;Parent=MS.gene067219.t1 |
chr8.1 | exon | 58676801 | 58676921 | 58676801 | ID=MS.gene067219.t1.exon3;Parent=MS.gene067219.t1 |
chr8.1 | CDS | 58676801 | 58676921 | 58676801 | ID=cds.MS.gene067219.t1;Parent=MS.gene067219.t1 |
chr8.1 | exon | 58677699 | 58677818 | 58677699 | ID=MS.gene067219.t1.exon4;Parent=MS.gene067219.t1 |
chr8.1 | CDS | 58677699 | 58677818 | 58677699 | ID=cds.MS.gene067219.t1;Parent=MS.gene067219.t1 |
chr8.1 | exon | 58677917 | 58677987 | 58677917 | ID=MS.gene067219.t1.exon5;Parent=MS.gene067219.t1 |
chr8.1 | CDS | 58677917 | 58677987 | 58677917 | ID=cds.MS.gene067219.t1;Parent=MS.gene067219.t1 |
chr8.1 | exon | 58678087 | 58678318 | 58678087 | ID=MS.gene067219.t1.exon6;Parent=MS.gene067219.t1 |
chr8.1 | CDS | 58678087 | 58678318 | 58678087 | ID=cds.MS.gene067219.t1;Parent=MS.gene067219.t1 |
Gene Sequence |
Protein sequence |