Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067276.t1 | XP_024627486.1 | 81.6 | 217 | 9 | 3 | 1 | 187 | 1 | 216 | 4.60E-96 | 360.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067276.t1 | Q9M160 | 37.6 | 117 | 48 | 5 | 5 | 100 | 8 | 120 | 1.2e-07 | 58.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067276.t1 | A0A396GEA7 | 79.6 | 191 | 8 | 3 | 1 | 161 | 1 | 190 | 8.2e-79 | 302.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050020 | MS.gene067276 | 0.806595 | 7.62E-50 | -1.69E-46 |
MS.gene052456 | MS.gene067276 | 0.839113 | 1.92E-57 | -1.69E-46 |
MS.gene05456 | MS.gene067276 | 0.822906 | 1.84E-53 | -1.69E-46 |
MS.gene055359 | MS.gene067276 | 0.826069 | 3.32E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067276.t1 | MTR_8g027435 | 83.432 | 169 | 19 | 3 | 1 | 168 | 1 | 161 | 1.14e-96 | 277 |
MS.gene067276.t1 | MTR_7g117695 | 34.956 | 226 | 94 | 7 | 4 | 181 | 5 | 225 | 8.65e-28 | 104 |
MS.gene067276.t1 | MTR_1g007905 | 33.533 | 167 | 83 | 8 | 35 | 178 | 44 | 205 | 1.11e-15 | 72.4 |
MS.gene067276.t1 | MTR_3g091680 | 34.783 | 161 | 89 | 7 | 36 | 186 | 9 | 163 | 7.99e-14 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067276.t1 | AT4G27810 | 35.079 | 191 | 99 | 5 | 5 | 180 | 7 | 187 | 1.82e-22 | 89.7 |
MS.gene067276.t1 | AT5G53030 | 31.818 | 220 | 96 | 8 | 14 | 180 | 18 | 236 | 2.82e-17 | 77.4 |
MS.gene067276.t1 | AT5G53030 | 45.455 | 88 | 42 | 2 | 14 | 95 | 18 | 105 | 6.14e-15 | 70.5 |
Find 47 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCATGAATAATGGAAGTTT+TGG | 0.308636 | 8.2:-70474750 | None:intergenic |
TTCATGCCAAGTCTCTTGTT+TGG | 0.319122 | 8.2:+70475262 | MS.gene067276:CDS |
ACAATATCAGTACATGGTTT+TGG | 0.319500 | 8.2:-70474873 | None:intergenic |
GAGTGTAGTGATCATTCTTT+TGG | 0.350568 | 8.2:+70475005 | MS.gene067276:CDS |
TCCATCACCTACAACAGTTT+TGG | 0.360357 | 8.2:+70474965 | MS.gene067276:CDS |
TCATGCCAAGTCTCTTGTTT+GGG | 0.361967 | 8.2:+70475263 | MS.gene067276:CDS |
ACTTGGGAGTTTGATTCTTA+AGG | 0.363896 | 8.2:+70475043 | MS.gene067276:CDS |
ACAAGAGACTTGGCATGAAA+TGG | 0.388152 | 8.2:-70475258 | None:intergenic |
AGGAAGAAGATAAAACATTA+TGG | 0.389689 | 8.2:+70475222 | MS.gene067276:CDS |
GAAGCTTGTGAGGAAGAAAA+TGG | 0.395638 | 8.2:+70474717 | MS.gene067276:CDS |
GGTGGAGGGCTCATGAATAA+TGG | 0.418821 | 8.2:-70474759 | None:intergenic |
TCCAACACTAGTCAAGTGTT+TGG | 0.431206 | 8.2:+70474908 | MS.gene067276:CDS |
ATCACAGCATCAATACCATT+TGG | 0.441782 | 8.2:+70474828 | MS.gene067276:CDS |
TCCAAACACTTGACTAGTGT+TGG | 0.454319 | 8.2:-70474909 | None:intergenic |
CTCTCTGGTGAATGCATTGG+TGG | 0.455474 | 8.2:-70474777 | None:intergenic |
AGCATCAATACCATTTGGTT+GGG | 0.456795 | 8.2:+70474833 | MS.gene067276:CDS |
GATGGAAGCGTGTGGTTCCA+TGG | 0.463300 | 8.2:+70476142 | MS.gene067276:CDS |
GGTCCATCCAAAACTGTTGT+AGG | 0.469058 | 8.2:-70474972 | None:intergenic |
TTTGTATCAATGAACAACCT+TGG | 0.487076 | 8.2:-70474939 | None:intergenic |
GTGGTTGGTGGTGGCATCAT+AGG | 0.487189 | 8.2:+70475177 | MS.gene067276:CDS |
TCCAAAACTGTTGTAGGTGA+TGG | 0.491958 | 8.2:-70474966 | None:intergenic |
CAGCATCAATACCATTTGGT+TGG | 0.495412 | 8.2:+70474832 | MS.gene067276:CDS |
TTTGGTTGGGAAGAAGAGCC+AGG | 0.497915 | 8.2:+70474846 | MS.gene067276:CDS |
GGCTCTTCTTCCCAACCAAA+TGG | 0.498578 | 8.2:-70474843 | None:intergenic |
TCTGGTGAATGCATTGGTGG+AGG | 0.503654 | 8.2:-70474774 | None:intergenic |
TGAACAAGTATCAGCGTTGG+TGG | 0.511295 | 8.2:+70476178 | MS.gene067276:CDS |
GATTCTTAAGGAAGAAATGA+GGG | 0.514201 | 8.2:+70475055 | MS.gene067276:CDS |
GATCTCTCTGGTGAATGCAT+TGG | 0.516177 | 8.2:-70474780 | None:intergenic |
CTGGTGAATGCATTGGTGGA+GGG | 0.527666 | 8.2:-70474773 | None:intergenic |
TGATTCTTAAGGAAGAAATG+AGG | 0.535606 | 8.2:+70475054 | MS.gene067276:CDS |
GTGACAAGAATGTGAAGATG+AGG | 0.544963 | 8.2:+70475202 | MS.gene067276:CDS |
ATGCATTCACCAGAGAGATC+AGG | 0.552291 | 8.2:+70474783 | MS.gene067276:CDS |
AGTGAAAATGGAAGCTTGTG+AGG | 0.556127 | 8.2:+70474707 | None:intergenic |
AATGATAATGTGGTTGGTGG+TGG | 0.559273 | 8.2:+70475168 | MS.gene067276:CDS |
ATTTACCCAAACAAGAGACT+TGG | 0.560482 | 8.2:-70475268 | None:intergenic |
GATAATGATAATGTGGTTGG+TGG | 0.575718 | 8.2:+70475165 | MS.gene067276:CDS |
GTATCAATGAACAACCTTGG+AGG | 0.583736 | 8.2:-70474936 | None:intergenic |
AGTGTTTGGAACTTCCTCCA+AGG | 0.603766 | 8.2:+70474922 | MS.gene067276:CDS |
AAGGATAATGATAATGTGGT+TGG | 0.603829 | 8.2:+70475162 | MS.gene067276:intron |
TTGCAGACAAAGATGTGTGA+AGG | 0.630882 | 8.2:+70476120 | MS.gene067276:intron |
TGATAAGGATAATGATAATG+TGG | 0.637344 | 8.2:+70475158 | MS.gene067276:intron |
AAGTGAACAAGTATCAGCGT+TGG | 0.638401 | 8.2:+70476175 | MS.gene067276:CDS |
AATGTGACAATATCAGTACA+TGG | 0.654176 | 8.2:-70474879 | None:intergenic |
ATTGATGCTGTGATATGAAG+TGG | 0.663709 | 8.2:-70474819 | None:intergenic |
AGACAAAGATGTGTGAAGGA+TGG | 0.677511 | 8.2:+70476124 | MS.gene067276:intron |
GATGCTGTGATATGAAGTGG+TGG | 0.702825 | 8.2:-70474816 | None:intergenic |
GTGTGAAGGATGGAAGCGTG+TGG | 0.756661 | 8.2:+70476134 | MS.gene067276:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAGAATAATAATAATGT+TGG | + | chr8.2:70475975-70475994 | MS.gene067276:intron | 15.0% |
!! | AGAAGAATAATAATAATGTT+GGG | + | chr8.2:70475976-70475995 | MS.gene067276:intron | 15.0% |
!! | TATTGTAAATATAATTCTTG+TGG | + | chr8.2:70475577-70475596 | MS.gene067276:intron | 15.0% |
!! | TTGTTATAGAAATTTCTATT+TGG | + | chr8.2:70475423-70475442 | MS.gene067276:intron | 15.0% |
!!! | ATAATTGATTTTGGTATTTT+TGG | + | chr8.2:70475642-70475661 | MS.gene067276:intron | 15.0% |
!!! | TTTTATTTTGTGTAAAGATA+TGG | + | chr8.2:70476069-70476088 | MS.gene067276:intron | 15.0% |
!! | ACTAATCATTTATAAACTTG+TGG | + | chr8.2:70475713-70475732 | MS.gene067276:intron | 20.0% |
!! | ATACCAAAATCAATTATACT+TGG | - | chr8.2:70475639-70475658 | None:intergenic | 20.0% |
!! | ATTTCACTTAACTAGTATAT+TGG | + | chr8.2:70475540-70475559 | MS.gene067276:intron | 20.0% |
!! | GGTAAATAGAAATAAGAAAA+TGG | + | chr8.2:70476042-70476061 | MS.gene067276:intron | 20.0% |
!!! | ATTCCAAGTATAATTGATTT+TGG | + | chr8.2:70475633-70475652 | MS.gene067276:intron | 20.0% |
!!! | ATTTTGTTTGTAAATCCAAA+TGG | - | chr8.2:70475860-70475879 | None:intergenic | 20.0% |
!!! | ATTTTTTCTAAAATACGAGT+AGG | + | chr8.2:70476020-70476039 | MS.gene067276:intron | 20.0% |
!!! | TTTTTTCTAAAATACGAGTA+GGG | + | chr8.2:70476021-70476040 | MS.gene067276:intron | 20.0% |
! | AAATGAGGGTAAAGAAAAAA+GGG | + | chr8.2:70475069-70475088 | MS.gene067276:intron | 25.0% |
! | AGGAAGAAGATAAAACATTA+TGG | + | chr8.2:70475222-70475241 | MS.gene067276:CDS | 25.0% |
! | CTTGAAACTATAGTTATAGA+AGG | + | chr8.2:70475388-70475407 | MS.gene067276:intron | 25.0% |
! | GTTATTTAGATTAAAACGTG+TGG | + | chr8.2:70475514-70475533 | MS.gene067276:intron | 25.0% |
! | TTTAGAAAAAATCACTAGCA+TGG | - | chr8.2:70476012-70476031 | None:intergenic | 25.0% |
! | TTTATCATCTTCTGTTGATA+AGG | + | chr8.2:70475143-70475162 | MS.gene067276:intron | 25.0% |
!! | ATTGTTTGTGTAGTGTATTT+TGG | + | chr8.2:70475329-70475348 | MS.gene067276:intron | 25.0% |
!! | TGATAAGGATAATGATAATG+TGG | + | chr8.2:70475158-70475177 | MS.gene067276:intron | 25.0% |
!!! | AGTGTATTTTGGTTTGATTT+GGG | + | chr8.2:70475340-70475359 | MS.gene067276:intron | 25.0% |
!!! | ATTCTTTTGGTTTTGAAAGT+GGG | + | chr8.2:70475018-70475037 | MS.gene067276:CDS | 25.0% |
!!! | TAGTGTATTTTGGTTTGATT+TGG | + | chr8.2:70475339-70475358 | MS.gene067276:intron | 25.0% |
!!! | TGAATGTTAAGTTGAATAGT+TGG | + | chr8.2:70475492-70475511 | MS.gene067276:intron | 25.0% |
AAAAGTAGTTCCAACATTTG+GGG | - | chr8.2:70476096-70476115 | None:intergenic | 30.0% | |
AATGTGACAATATCAGTACA+TGG | - | chr8.2:70474882-70474901 | None:intergenic | 30.0% | |
CAAAAGTAGTTCCAACATTT+GGG | - | chr8.2:70476097-70476116 | None:intergenic | 30.0% | |
GAAATGAGGGTAAAGAAAAA+AGG | + | chr8.2:70475068-70475087 | MS.gene067276:intron | 30.0% | |
GATTCTTAAGGAAGAAATGA+GGG | + | chr8.2:70475055-70475074 | MS.gene067276:CDS | 30.0% | |
TCAAAAGTAGTTCCAACATT+TGG | - | chr8.2:70476098-70476117 | None:intergenic | 30.0% | |
TGATTCTTAAGGAAGAAATG+AGG | + | chr8.2:70475054-70475073 | MS.gene067276:CDS | 30.0% | |
TTCATGAAATATGCACCATT+TGG | + | chr8.2:70475842-70475861 | MS.gene067276:intron | 30.0% | |
TTCTATTTGGTTGTTCATGT+GGG | + | chr8.2:70475436-70475455 | MS.gene067276:intron | 30.0% | |
TTGGAGGAAAATGGATATTA+AGG | + | chr8.2:70475103-70475122 | MS.gene067276:intron | 30.0% | |
TTTCTATTTGGTTGTTCATG+TGG | + | chr8.2:70475435-70475454 | MS.gene067276:intron | 30.0% | |
TTTGTATCAATGAACAACCT+TGG | - | chr8.2:70474942-70474961 | None:intergenic | 30.0% | |
! | AAGGATAATGATAATGTGGT+TGG | + | chr8.2:70475162-70475181 | MS.gene067276:intron | 30.0% |
! | ACAATATCAGTACATGGTTT+TGG | - | chr8.2:70474876-70474895 | None:intergenic | 30.0% |
!! | CTCATGAATAATGGAAGTTT+TGG | - | chr8.2:70474753-70474772 | None:intergenic | 30.0% |
!! | TTTTGGTAATTGGAGGAAAA+TGG | + | chr8.2:70475094-70475113 | MS.gene067276:intron | 30.0% |
!!! | AAAAAGGGTGTTTTGGTAAT+TGG | + | chr8.2:70475084-70475103 | MS.gene067276:intron | 30.0% |
!!! | ATCACTACACTCTTTTTTGT+AGG | - | chr8.2:70474997-70475016 | None:intergenic | 30.0% |
!!! | CATTCTTTTGGTTTTGAAAG+TGG | + | chr8.2:70475017-70475036 | MS.gene067276:CDS | 30.0% |
!!! | GTAAAGAAAAAAGGGTGTTT+TGG | + | chr8.2:70475077-70475096 | MS.gene067276:intron | 30.0% |
!!! | TCACTACACTCTTTTTTGTA+GGG | - | chr8.2:70474996-70475015 | None:intergenic | 30.0% |
AATATGCACTATAGCCAAGA+TGG | + | chr8.2:70475929-70475948 | MS.gene067276:intron | 35.0% | |
ACTTGGGAGTTTGATTCTTA+AGG | + | chr8.2:70475043-70475062 | MS.gene067276:CDS | 35.0% | |
AGCATCAATACCATTTGGTT+GGG | + | chr8.2:70474833-70474852 | MS.gene067276:CDS | 35.0% | |
ATCACAGCATCAATACCATT+TGG | + | chr8.2:70474828-70474847 | MS.gene067276:CDS | 35.0% | |
ATTGATGCTGTGATATGAAG+TGG | - | chr8.2:70474822-70474841 | None:intergenic | 35.0% | |
ATTTACCCAAACAAGAGACT+TGG | - | chr8.2:70475271-70475290 | None:intergenic | 35.0% | |
TCTTGGCTATAGTGCATATT+TGG | - | chr8.2:70475929-70475948 | None:intergenic | 35.0% | |
! | GAGTGTAGTGATCATTCTTT+TGG | + | chr8.2:70475005-70475024 | MS.gene067276:CDS | 35.0% |
! | GATAATGATAATGTGGTTGG+TGG | + | chr8.2:70475165-70475184 | MS.gene067276:CDS | 35.0% |
!! | ACTAGTATATTGGCTTAGAG+TGG | + | chr8.2:70475550-70475569 | MS.gene067276:intron | 35.0% |
!!! | GTTTTGAAAGTGGGAAACTT+GGG | + | chr8.2:70475027-70475046 | MS.gene067276:CDS | 35.0% |
!!! | TTCACTTTTTCACTCTTCCA+TGG | - | chr8.2:70476162-70476181 | None:intergenic | 35.0% |
AAGACTAGATGTGACCATCT+TGG | - | chr8.2:70475946-70475965 | None:intergenic | 40.0% | |
AAGATATGGTCCCCAAATGT+TGG | + | chr8.2:70476083-70476102 | MS.gene067276:intron | 40.0% | |
AAGTGAACAAGTATCAGCGT+TGG | + | chr8.2:70476175-70476194 | MS.gene067276:CDS | 40.0% | |
ACAAGAGACTTGGCATGAAA+TGG | - | chr8.2:70475261-70475280 | None:intergenic | 40.0% | |
AGACAAAGATGTGTGAAGGA+TGG | + | chr8.2:70476124-70476143 | MS.gene067276:intron | 40.0% | |
CAGCATCAATACCATTTGGT+TGG | + | chr8.2:70474832-70474851 | MS.gene067276:CDS | 40.0% | |
GAAGCTTGTGAGGAAGAAAA+TGG | + | chr8.2:70474717-70474736 | MS.gene067276:CDS | 40.0% | |
GTATCAATGAACAACCTTGG+AGG | - | chr8.2:70474939-70474958 | None:intergenic | 40.0% | |
GTGACAAGAATGTGAAGATG+AGG | + | chr8.2:70475202-70475221 | MS.gene067276:CDS | 40.0% | |
TCCAAAACTGTTGTAGGTGA+TGG | - | chr8.2:70474969-70474988 | None:intergenic | 40.0% | |
TCCAAACACTTGACTAGTGT+TGG | - | chr8.2:70474912-70474931 | None:intergenic | 40.0% | |
TCCAACACTAGTCAAGTGTT+TGG | + | chr8.2:70474908-70474927 | MS.gene067276:CDS | 40.0% | |
TTCATGCCAAGTCTCTTGTT+TGG | + | chr8.2:70475262-70475281 | MS.gene067276:CDS | 40.0% | |
TTGCAGACAAAGATGTGTGA+AGG | + | chr8.2:70476120-70476139 | MS.gene067276:intron | 40.0% | |
! | GTTTTTGTTCCTGATCTCTC+TGG | - | chr8.2:70474795-70474814 | None:intergenic | 40.0% |
! | TCATGCCAAGTCTCTTGTTT+GGG | + | chr8.2:70475263-70475282 | MS.gene067276:CDS | 40.0% |
! | TCCATCACCTACAACAGTTT+TGG | + | chr8.2:70474965-70474984 | MS.gene067276:CDS | 40.0% |
!! | AATGATAATGTGGTTGGTGG+TGG | + | chr8.2:70475168-70475187 | MS.gene067276:CDS | 40.0% |
!!! | AAGGGTGTTTTGGTAATTGG+AGG | + | chr8.2:70475087-70475106 | MS.gene067276:intron | 40.0% |
!!! | GGTTTTGAAAGTGGGAAACT+TGG | + | chr8.2:70475026-70475045 | MS.gene067276:CDS | 40.0% |
!!! | GTACATGGTTTTGGTTTTCC+TGG | - | chr8.2:70474867-70474886 | None:intergenic | 40.0% |
!!! | TCACCTACAACAGTTTTGGA+TGG | + | chr8.2:70474969-70474988 | MS.gene067276:CDS | 40.0% |
ATGCATTCACCAGAGAGATC+AGG | + | chr8.2:70474783-70474802 | MS.gene067276:CDS | 45.0% | |
GATCTCTCTGGTGAATGCAT+TGG | - | chr8.2:70474783-70474802 | None:intergenic | 45.0% | |
GATGCTGTGATATGAAGTGG+TGG | - | chr8.2:70474819-70474838 | None:intergenic | 45.0% | |
GGTCCATCCAAAACTGTTGT+AGG | - | chr8.2:70474975-70474994 | None:intergenic | 45.0% | |
! | AGTGTTTGGAACTTCCTCCA+AGG | + | chr8.2:70474922-70474941 | MS.gene067276:CDS | 45.0% |
! | TGAACAAGTATCAGCGTTGG+TGG | + | chr8.2:70476178-70476197 | MS.gene067276:CDS | 45.0% |
CTCTCTGGTGAATGCATTGG+TGG | - | chr8.2:70474780-70474799 | None:intergenic | 50.0% | |
GGCTCTTCTTCCCAACCAAA+TGG | - | chr8.2:70474846-70474865 | None:intergenic | 50.0% | |
GGTGGAGGGCTCATGAATAA+TGG | - | chr8.2:70474762-70474781 | None:intergenic | 50.0% | |
TTTGGTTGGGAAGAAGAGCC+AGG | + | chr8.2:70474846-70474865 | MS.gene067276:CDS | 50.0% | |
! | CTGGTGAATGCATTGGTGGA+GGG | - | chr8.2:70474776-70474795 | None:intergenic | 50.0% |
! | TCTGGTGAATGCATTGGTGG+AGG | - | chr8.2:70474777-70474796 | None:intergenic | 50.0% |
! | GATGGAAGCGTGTGGTTCCA+TGG | + | chr8.2:70476142-70476161 | MS.gene067276:CDS | 55.0% |
! | GTGTGAAGGATGGAAGCGTG+TGG | + | chr8.2:70476134-70476153 | MS.gene067276:CDS | 55.0% |
!! | GTGGTTGGTGGTGGCATCAT+AGG | + | chr8.2:70475177-70475196 | MS.gene067276:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 70474714 | 70476206 | 70474714 | ID=MS.gene067276 |
chr8.2 | mRNA | 70474714 | 70476206 | 70474714 | ID=MS.gene067276.t1;Parent=MS.gene067276 |
chr8.2 | exon | 70474714 | 70475076 | 70474714 | ID=MS.gene067276.t1.exon1;Parent=MS.gene067276.t1 |
chr8.2 | CDS | 70474714 | 70475076 | 70474714 | ID=cds.MS.gene067276.t1;Parent=MS.gene067276.t1 |
chr8.2 | exon | 70475165 | 70475284 | 70475165 | ID=MS.gene067276.t1.exon2;Parent=MS.gene067276.t1 |
chr8.2 | CDS | 70475165 | 70475284 | 70475165 | ID=cds.MS.gene067276.t1;Parent=MS.gene067276.t1 |
chr8.2 | exon | 70476126 | 70476206 | 70476126 | ID=MS.gene067276.t1.exon3;Parent=MS.gene067276.t1 |
chr8.2 | CDS | 70476126 | 70476206 | 70476126 | ID=cds.MS.gene067276.t1;Parent=MS.gene067276.t1 |
Gene Sequence |
Protein sequence |