AlfalfaGEDB | MS.gene067476

M. sativa cultivar XinJiangDaYe / MS.gene067476

KEGG: -
GO: -
PFAM: PF13020.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067476.t1	PNX96111.1	78.6	603	105	5	1	592	1	590	9.20E-263	916

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067476.t1	A0A1P8ARG1	35.2	125	71	2	474	598	527	641	1.2e-13	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067476.t1	A0A2K3MZ83	78.6	603	105	5	1	592	1	590	6.6e-263	916.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051279	MS.gene067476	0.825204	5.32E-54	-1.69E-46
MS.gene051744	MS.gene067476	0.823414	1.40E-53	-1.69E-46
MS.gene053079	MS.gene067476	0.804995	1.65E-49	-1.69E-46
MS.gene053226	MS.gene067476	0.811109	8.25E-51	-1.69E-46
MS.gene053542	MS.gene067476	0.808564	2.91E-50	-1.69E-46
MS.gene056050	MS.gene067476	0.810506	1.11E-50	-1.69E-46
MS.gene056174	MS.gene067476	0.803137	4.02E-49	-1.69E-46
MS.gene056308	MS.gene067476	0.831115	2.00E-55	-1.69E-46
MS.gene056507	MS.gene067476	0.809035	2.31E-50	-1.69E-46
MS.gene05686	MS.gene067476	0.843579	1.28E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067476.t1	MTR_8g080450	34.483	464	215	13	165	553	7	456	3.81e-65	221
MS.gene067476.t1	MTR_5g069070	29.834	543	290	18	72	603	49	511	2.48e-52	187
MS.gene067476.t1	MTR_4g081600	32.143	336	199	7	7	331	8	325	1.80e-38	152
MS.gene067476.t1	MTR_4g082295	39.098	133	66	4	472	603	2	120	1.38e-19	87.0
MS.gene067476.t1	MTR_8g038765	33.099	142	85	5	466	606	236	368	9.10e-12	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067476.t1	AT1G08300	35.200	125	71	2	474	598	489	603	1.24e-15	80.9
MS.gene067476.t1	AT1G08300	35.200	125	71	2	474	598	527	641	1.27e-15	80.9
MS.gene067476.t1	AT1G08300	35.833	120	67	2	479	598	586	695	1.28e-15	80.9
MS.gene067476.t1	AT4G13750	34.646	127	69	3	474	598	2600	2714	2.09e-13	74.3

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Find 110 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATAAAATCCGAAG+AGG	0.611000	2.4:+608145	MS.gene067476:CDS
AAACAAACTTTCTTCTTTCC+TGG	0.281721	2.4:-608023	None:intergenic
AAAGAAGAAAGTTTGTTTCA+CGG	0.453031	2.4:+608028	MS.gene067476:CDS
AAATTCCCTTACACGTTCAA+GGG	0.524065	2.4:-607557	None:intergenic
AACAAAGATATATTCTGGAA+GGG	0.601862	2.4:+607322	MS.gene067476:CDS
AAGAGGAAGCTAGGATAATT+GGG	0.380292	2.4:+608162	MS.gene067476:CDS
AAGATTTCGACCTTTATATT+CGG	0.302596	2.4:-608237	None:intergenic
AATTATCCTAGCTTCCTCTT+CGG	0.481527	2.4:-608159	None:intergenic
ACAATGATTCGTCCTGGTGT+AGG	0.558027	2.4:+604034	MS.gene067476:CDS
ACACAGTTGAAACTGTCCTT+TGG	0.427360	2.4:+604200	MS.gene067476:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCAATAAAATCCGAAG+AGG	+	chr2.4:608145-608164	MS.gene067476:CDS	30.0%
AAACAAACTTTCTTCTTTCC+TGG	-	chr2.4:608026-608045	None:intergenic	30.0%
AAAGTGAATGTGAATGACAA+TGG	-	chr2.4:605056-605075	None:intergenic	30.0%
AAGTTGGAGAATGAAAGAAA+TGG	+	chr2.4:604747-604766	MS.gene067476:intron	30.0%
AATACCATGGTGAAATATCT+CGG	-	chr2.4:605237-605256	None:intergenic	30.0%
AATACCATGGTGAATAATCT+CGG	-	chr2.4:606717-606736	None:intergenic	30.0%
AATTACACTTACTTCCTTTG+AGG	-	chr2.4:606443-606462	None:intergenic	30.0%
AATTATTTACGTAGGTAGTG+TGG	-	chr2.4:605095-605114	None:intergenic	30.0%
ACTCACACAAACAATTACAA+GGG	-	chr2.4:605725-605744	None:intergenic	30.0%
ACTTTCGAACTTTCATTAAG+CGG	+	chr2.4:603930-603949	MS.gene067476:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	603893	608568	603893	ID=MS.gene067476
chr2.4	mRNA	603893	608568	603893	ID=MS.gene067476.t1;Parent=MS.gene067476
chr2.4	exon	603893	604095	603893	ID=MS.gene067476.t1.exon1;Parent=MS.gene067476.t1
chr2.4	CDS	603893	604095	603893	ID=cds.MS.gene067476.t1;Parent=MS.gene067476.t1
chr2.4	exon	604175	604429	604175	ID=MS.gene067476.t1.exon2;Parent=MS.gene067476.t1
chr2.4	CDS	604175	604429	604175	ID=cds.MS.gene067476.t1;Parent=MS.gene067476.t1
chr2.4	exon	604521	604679	604521	ID=MS.gene067476.t1.exon3;Parent=MS.gene067476.t1
chr2.4	CDS	604521	604679	604521	ID=cds.MS.gene067476.t1;Parent=MS.gene067476.t1
chr2.4	exon	607288	608056	607288	ID=MS.gene067476.t1.exon4;Parent=MS.gene067476.t1
chr2.4	CDS	607288	608056	607288	ID=cds.MS.gene067476.t1;Parent=MS.gene067476.t1
chr2.4	exon	608134	608568	608134	ID=MS.gene067476.t1.exon5;Parent=MS.gene067476.t1
chr2.4	CDS	608134	608568	608134	ID=cds.MS.gene067476.t1;Parent=MS.gene067476.t1

Gene Sequence

>MS.gene067476

ATGGAGTCGGAGGAAGTTGCAGCCCTGAATCATCATCACTTTCGAACTTTCATTAAGCGGAATTATCGTAGTTTTGAGGATCATAGGAGTGATGAAGACGAGGACAAGGAGTTTCTTGAAATAATGTATTGGGATGATGAAACAATGATTCGTCCTGGTGTAGGTTTATCATCTGGCACCATTGATATCGGAGACTCACTCTGGTAAGTGCCGTTTATAATTTCTTAATTTTGATTTTTTTTTTTCTTCCTCCTCATCCATGCGTCACTTGCACATTTGTAGGACTTACAATTATTCGAGAAAAGGGACACAGTTGAAACTGTCCTTTGGACTTGATCAGAGTAAGCTGGCAACAATCGCTGATGTTCTAGTTACAGCAATTAACCTAAAGGATTCTTCAAAATTGCTTGTCTTAAGTAAAGATGTTACTAAAGGTGGTATTATTAGATGTAATCATCCACAAGTTTGTCAAACTAAAACCGGATTTATGGATCATTCTGGGGCTGTTTCCATCCGGCTTCAGATTCAGGCCAGACCGTAAGTTGAGATATAATTTTGACATATTACTAGCAGTAATTTTTTTTTTTATTCCGCGTTTTCTTATGATTGATTTTTTATTCATTTACAGCAATAAGCCTACTATTCATTCTTTCCATCGACATTTTAGACTGCAATTATACTGGTTTAAGAAGAAAAGGATTGACCAAGTATTTTCTGATGTGATAAAGTCTACAACCACCACATATGACAAGTGCAAGAATGGTGTATCTGATTCTAGATGGGAAAGGTATCTAATATATTCATGCTTTTATGAATATTTTTGAACTGTCTTTAGTTTGACTTGTTGGGTTCTAAAGTTGGAGAATGAAAGAAATGGTAGGGGAGCGAGAGAGAGAGAGAGAGAGATAGGCAATGATTGAAGCCCGGAGTGAATGAAAATGGAATGGCAACTAACGTTCATCTAACTCTATTAATCTAAAGGGGTGTGTTTGTCCCTTAAGATAAGATTTAAGCGAGGTTAGTGTCTAATTTAAAACTATAGGGGGTGTTGTTGCTTTTTAAGAAAACCTCAAAGGAAGTGTAATTTCCCCTTGTAATTGTGTGTGAGTCTTGTTTCTTAATTGTGTGTGTGTGTGGGTCATGCTGAAATCATTGTGATACCATTGTCATTCACATTCACTTTGCATCGTGCCAGTGTGCCACACTACCTACGTAAATAATTCAATGTGACTCCATCATCACAACGTTATTTTCTTAAATTATGTTTAACATATATGCAAATGATTGAAACTAGAACAAATTGGATGTGATCTATTTCTGAACTCTTCTTAATACTAACTTCCGAGATATTTCACCATGGTATTATAAAACTTGGTTTTGTTTAATGTTTTTCTTGTCAACGTCGTCGTAGACTCAAAATTTATGGGAATTTACAGTTGCTTCATCTTTTTAATATTGCTTGGGAGGGCTGCATTTGTCTTTCCCTCTCTGCACTTGCCAATCATATGTATAGGCGGTACTGAACAAACACCGAGTATTTTACATTCGAACACCTACTTGAACATGTTTTATGATATACTTTTAGTTCATAGTAGTTTGAGAAAATAATTTGTTGGGTTCTAAAGTTGGAGAATGAGAGAAATAGTAGGGGGGGAGAGAGACAATGATTGAAGCCTGGAGTGAATGAAAATGGAAGGGCAGCTAACGTTAATCTTAAGGGGTGTGTTTGTCACTTTAGATAAAATTTAAGGGTGGTTAGTGTCTAATTGAAAACTATAGGGGGTGTTGGTGCTTTTTAAGAAAACCTCAAGGGAGGTGAGTGTAATTTCCCCTTGTAATTGTTTGTGTGAGTCATGTTTCTTAATTGTGTCATGCTGAATATTATCATTCACATTCACTTTGCATCGTGCCAGTGTGCCACACTACCTATGTAAATAATTCATTGTGACTCTATCATCACAACGTTATTTTCTTAAAATATGTTTGACATATATGCAAATGACTGAAACTGGAACAAATTGTATCTGATCTATTTCTGAACTCTTCTTAATACTAACTTCCGAGATATTTCACCATGGTATTATAAAACTTTGTTTTGTTTAATGTATTTCTTGTCAACGTCGTTGTAGACTCAAAAAAATTATGGGAATTTACGGTTGCTTCATCTTTTTAATATTGCTTGGGAGGGCTGCATTTGTTTTTCCCCTCTGCACTTGCCAATCATATTTATAGGCGGCACTGAACAAACACCGAGTATTTTACATTCGAACACTTACTTGAACATGTTTTATGATATACTTTTAGTTCATAGTTGTTTGAGAAAATAATGTTTTGTTGGGTTCTAAAGTTGGAGAATGAAAGAAATGGTAGGGGAGAGAGAGAAAGAGAGACAATGATTGAAGCCTCGAGTGAATGAAAATGGAATGGCAACTAACGTTCATCTAACTCTATTAATCTAAAGGGGTGTGTTTGTCCCTTAAGATAAGATTTAAGAGAGGTTAGTGTCTAATTTAAAACTATAGGGGGTGTTGGTGCTTTTTAAGAAAACCTCAAAGGAAGTAAGTGTAATTTCCCCTTGTAATTGTGTGTGAGTCATGTTTCTTAATTGTGTGTGTGTGGGTCATGCTGAAATCACCGTGATACTATTGTCATTCACATTCACTTTGCATCGTGCGAGTGTGCCACACTACCTATGTAAATAATTCAATGTGACTGCATCATCACAACGTTATTTTCTTAAATTATGTTTGACATATATGCAAATGATTGAAACTAGAACAAATTGCATGTGATCTATTTCTGAAATCTTCTTAACTAACTTCCGAGATTATTCACCATGGTATTATAAAACTTTGTTTTGTTTAATGTTTTTCTTGTCAACGTCGTTGTAGACTCAAAAAAATTATGGGAATTTATGGTTGCTTCATCTTCTTAATATTGCTTGGGAGGGATGCATTTGTCTTTCCCCTCTCTGCACTTGCCAATCATATGTATAGGCGGCACTGAACAAACACCGAGTATTTTACATTTGAACACCTACTTGAACATGTTTTATGATATACTTTTAGTTCACAGTTGTTTGAGAAAATAATTTTTTGTTGGGTTCTAAAGTTGTAGAATGGGAGAAATGGTAGGGGAGAGAGAGAGACAATGATTGAAGCTTGGAGTGAATGAAAATGGAAGGGCAACTAACGTTAATCTAACTCTGTTAATCTAAAGGGGTGTGTTTGTCACTTTAGATAAAATTTAAGGTAGGTAGTGTCTAATTGAAAACTATAAGGGGTGTTGATGCTTTTTAAGAAAATTTCAAGGGAAGTGAGTGTAATTTCCCCTTGTAATTGTGTGTGTGTGTCATGTTTTTAAATTGTGTGTGGGTCATTTTGTGATATGTGCAGATATTTGGTAGAGGCTAGTAAGGACTTTTCCCTGAACAAAGATATATTCTGGAAGGGCTTACTGGATCATTGTAAAGGGGACTATTTTCTGGTAGACATTGTTAATTCTGGTTCTAAACTGTTACTCAACGAGAAACCCCCACAACTATCTTTTTTAATCGAAGCTGGTAAAGATGATTTTCACTTAATTGGTAGTTTTGGTGATTTGCTAAGTCACGCTTTACAACTGGCGTACTTGTCTATACAACAGTTAGATGCTGAGAATTTAACCCTTGAACGTGTAAGGGAATTTGAGGAGCGTCTGTTAAAGAATGGCAGCTTTGTTTTCCAATGTTTTTTCATCAACAGTAAATTCAAGCAAAGCTTTCTGCAATATCTGGAACAAGCTGAACCTGATCTAAAAATGGATGATGATGGTAAAAAAAATATTTCTGTTGGTGATGGAAAAGGTGGTAATTCTACTGAAGAGCAACCAGCTGACACTGATTATGCTCATTCAAAACCGAGTGATACTAAACAAGATGAACTCAGTAAATCTCTTCAGGCAATAATGACCTTGTACAATGAATGTTTAAAACCTGTCACGAAGAAGATCCATGCAGAATACCCGGTTGAGGAATTCAGTCGTGAACTAGAAAAGAAGATCTCTGAATGGCACGTTACTGCACAAAAAGATGCTTATTATCAATTTAGAGAGCAGGAGGAGAAGATCAATGATGCTGATTATATTGCTGACCAGGAAAGAAGAAAGTTTGTTTCACGGCCTACTGTAAGCACTCATTCTGTTGATATTACAATTTTAGTCTTTTTGAAAAATCTTATTTTATTTTTTTGTTGTTGGTGTAGGCCAGAGAAAAAAAAGCAATAAAATCCGAAGAGGAAGCTAGGATAATTGGGGAAATGGGTGAGAAGCATGCACACAAATATTTCACCACCAAATATAAAGGTCCCGAATATAAAGGTCGAAATCTTGTAGTTCGTTGGATGAATGAACATAGAGAAGCCGGACACGCTTACGATTTGTGCGTTTTTGAGAAAAATAAACCCAAGATTTTTATTAAAGTGAAGTCCACCTCTGTGTTAGGAAAAAATTGGTTTCATTTGACACCCAACGAGTATGAATCTGCTAAAGAGAACGAGGAGAATTACATCATTGCACATGTTCATATAAATGAAAATGAGCAAGATGAAACAAAGAAATACACTTTGACTGAATATGTTAATCCTCTTAAAGAAGGCGGTGAACTAAAATTGTCCATGACACGCTGCCACAAGGAATGA

Protein sequence

>MS.gene067476.t1

MESEEVAALNHHHFRTFIKRNYRSFEDHRSDEDEDKEFLEIMYWDDETMIRPGVGLSSGTIDIGDSLWTYNYSRKGTQLKLSFGLDQSKLATIADVLVTAINLKDSSKLLVLSKDVTKGGIIRCNHPQVCQTKTGFMDHSGAVSIRLQIQARPNKPTIHSFHRHFRLQLYWFKKKRIDQVFSDVIKSTTTTYDKCKNGVSDSRWERYLVEASKDFSLNKDIFWKGLLDHCKGDYFLVDIVNSGSKLLLNEKPPQLSFLIEAGKDDFHLIGSFGDLLSHALQLAYLSIQQLDAENLTLERVREFEERLLKNGSFVFQCFFINSKFKQSFLQYLEQAEPDLKMDDDGKKNISVGDGKGGNSTEEQPADTDYAHSKPSDTKQDELSKSLQAIMTLYNECLKPVTKKIHAEYPVEEFSRELEKKISEWHVTAQKDAYYQFREQEEKINDADYIADQERRKFVSRPTAREKKAIKSEEEARIIGEMGEKHAHKYFTTKYKGPEYKGRNLVVRWMNEHREAGHAYDLCVFEKNKPKIFIKVKSTSVLGKNWFHLTPNEYESAKENEENYIIAHVHINENEQDETKKYTLTEYVNPLKEGGELKLSMTRCHKE