Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067498.t1 | XP_013465643.1 | 91.5 | 445 | 33 | 1 | 1 | 445 | 1 | 440 | 4.50E-209 | 737.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067498.t1 | Q5KQN0 | 77.7 | 377 | 83 | 1 | 68 | 444 | 58 | 433 | 1.9e-160 | 567.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067498.t1 | A0A072VCB3 | 91.5 | 445 | 33 | 1 | 1 | 445 | 1 | 440 | 3.2e-209 | 737.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene067498 | MS.gene83511 | PPI |
MS.gene99860 | MS.gene067498 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067498.t1 | MTR_2g105640 | 96.180 | 445 | 12 | 3 | 1 | 445 | 1 | 440 | 0.0 | 851 |
MS.gene067498.t1 | MTR_3g082180 | 60.837 | 406 | 146 | 4 | 49 | 442 | 25 | 429 | 8.37e-167 | 477 |
MS.gene067498.t1 | MTR_7g068380 | 47.045 | 423 | 205 | 5 | 30 | 443 | 23 | 435 | 1.22e-106 | 324 |
MS.gene067498.t1 | MTR_4g016720 | 42.263 | 433 | 246 | 3 | 8 | 439 | 2 | 431 | 3.11e-106 | 323 |
MS.gene067498.t1 | MTR_5g070330 | 44.773 | 440 | 216 | 8 | 14 | 443 | 4 | 426 | 3.63e-105 | 320 |
MS.gene067498.t1 | MTR_8g033030 | 56.522 | 69 | 30 | 0 | 136 | 204 | 30 | 98 | 7.06e-17 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067498.t1 | AT3G13320 | 68.571 | 420 | 127 | 3 | 27 | 442 | 18 | 436 | 0.0 | 566 |
MS.gene067498.t1 | AT1G55730 | 70.707 | 396 | 107 | 3 | 48 | 442 | 49 | 436 | 0.0 | 561 |
MS.gene067498.t1 | AT1G55730 | 70.707 | 396 | 107 | 3 | 48 | 442 | 49 | 436 | 0.0 | 561 |
MS.gene067498.t1 | AT1G55720 | 67.609 | 389 | 117 | 4 | 70 | 452 | 75 | 460 | 0.0 | 521 |
MS.gene067498.t1 | AT1G55720 | 68.966 | 377 | 113 | 3 | 70 | 445 | 75 | 448 | 0.0 | 519 |
MS.gene067498.t1 | AT5G01490 | 47.783 | 406 | 203 | 5 | 47 | 444 | 38 | 442 | 6.06e-118 | 353 |
MS.gene067498.t1 | AT5G01490 | 47.783 | 406 | 203 | 5 | 47 | 444 | 38 | 442 | 6.06e-118 | 353 |
MS.gene067498.t1 | AT2G38170 | 45.368 | 421 | 222 | 5 | 30 | 444 | 20 | 438 | 6.73e-109 | 331 |
MS.gene067498.t1 | AT2G38170 | 45.131 | 421 | 223 | 5 | 30 | 444 | 20 | 438 | 2.10e-108 | 329 |
MS.gene067498.t1 | AT3G51860 | 44.060 | 463 | 231 | 9 | 19 | 463 | 7 | 459 | 1.56e-107 | 327 |
MS.gene067498.t1 | AT3G51860 | 43.584 | 413 | 205 | 9 | 19 | 413 | 7 | 409 | 9.87e-91 | 284 |
MS.gene067498.t1 | AT2G38170 | 44.023 | 343 | 164 | 6 | 30 | 356 | 20 | 350 | 2.46e-71 | 231 |
Find 98 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCGATAGGTTGGGCAATT+TGG | 0.166335 | 2.4:-220801 | None:intergenic |
CTTGGATGTGCATTCTTTAC+TGG | 0.168249 | 2.4:+213062 | MS.gene067498:CDS |
CTCAATCGGAAGCGATAATT+TGG | 0.177448 | 2.4:+217004 | MS.gene067498:CDS |
TCCGATAGGTTGGGCAATTT+GGG | 0.184061 | 2.4:-220800 | None:intergenic |
CAACTCAGGGTTGTTGTTGA+TGG | 0.270661 | 2.4:+213207 | MS.gene067498:CDS |
CTTACTACCCTTTGGTCCTT+TGG | 0.284264 | 2.4:+212773 | MS.gene067498:CDS |
CTCTGGCGGAAAACATGTTT+GGG | 0.294043 | 2.4:+212815 | MS.gene067498:CDS |
GGAGAAGATGATGATGATTT+AGG | 0.299978 | 2.4:-212672 | None:intergenic |
TCCAATATGCTTCTTGTCCT+TGG | 0.300655 | 2.4:+213044 | MS.gene067498:CDS |
CTTATTGGGTATTGCTCCTT+TGG | 0.319778 | 2.4:+212851 | MS.gene067498:CDS |
ATACCACAAACATCGATATC+TGG | 0.329138 | 2.4:-218475 | None:intergenic |
CAAAGGAGCAATACCCAATA+AGG | 0.341740 | 2.4:-212850 | None:intergenic |
GGTTTACTTAATGCAACATT+TGG | 0.344265 | 2.4:+212933 | MS.gene067498:CDS |
TCTCTGGCGGAAAACATGTT+TGG | 0.353870 | 2.4:+212814 | MS.gene067498:CDS |
TGCTATCATGTTTGCTGTAA+AGG | 0.362095 | 2.4:+218334 | MS.gene067498:CDS |
GTCATCTTGCTTCCAATTGT+AGG | 0.377243 | 2.4:+218290 | MS.gene067498:CDS |
ATCCCCTTCTGTGTGGTTGT+TGG | 0.381081 | 2.4:+218679 | MS.gene067498:CDS |
TCCAAGGACAAGAAGCATAT+TGG | 0.388568 | 2.4:-213045 | None:intergenic |
AAAGAAGGAACCTGGTCAAC+TGG | 0.393990 | 2.4:-213394 | None:intergenic |
TGTTCACTACAATAAACTTC+AGG | 0.394259 | 2.4:+213091 | MS.gene067498:CDS |
ATCTTCCTGCACTATTTCTC+TGG | 0.396428 | 2.4:+212798 | MS.gene067498:CDS |
TTTCCACAGGATATCACAAT+TGG | 0.399751 | 2.4:+218431 | MS.gene067498:intron |
CAAGCCTTTAAAATAATTTG+AGG | 0.409091 | 2.4:-219996 | None:intergenic |
ACTCACTCCGAAGTTCATCT+TGG | 0.409420 | 2.4:+213268 | MS.gene067498:CDS |
TCTGCGGCATTTCCTACAAT+TGG | 0.429263 | 2.4:-218302 | None:intergenic |
ATCAACATCTTACTACCCTT+TGG | 0.435660 | 2.4:+212765 | MS.gene067498:CDS |
GTTGTTCAGCAATCTTTACT+TGG | 0.446219 | 2.4:+213011 | MS.gene067498:CDS |
TTCTACACCGGACCAACACT+TGG | 0.453893 | 2.4:+212909 | MS.gene067498:CDS |
AACTTACGTTCCGATAGGTT+GGG | 0.460858 | 2.4:-220809 | None:intergenic |
GTTGTTGTTGATGGCTGTAA+TGG | 0.461660 | 2.4:+213216 | MS.gene067498:CDS |
CTCACTCCGAAGTTCATCTT+GGG | 0.462664 | 2.4:+213269 | MS.gene067498:CDS |
GATTGGTTACTTTGCCGAAA+AGG | 0.464500 | 2.4:-221417 | None:intergenic |
ATCACAATTGGAGTTGCTGT+TGG | 0.467118 | 2.4:+218443 | MS.gene067498:CDS |
TTGTTGTTGATGGCTGTAAT+GGG | 0.471034 | 2.4:+213217 | MS.gene067498:CDS |
GCAGCTGCTGTTGTCAACTC+AGG | 0.475580 | 2.4:+213193 | MS.gene067498:CDS |
CCTTCTGTGTGGTTGTTGGA+TGG | 0.484096 | 2.4:+218683 | MS.gene067498:CDS |
GCTCCTTTGGCTGAACGTCT+AGG | 0.490124 | 2.4:+212864 | MS.gene067498:CDS |
ACTGTACAGCTATACCTCTA+TGG | 0.490233 | 2.4:-217079 | None:intergenic |
GTATGGGTATCAGTGTTGTC+TGG | 0.492249 | 2.4:+217042 | MS.gene067498:CDS |
ATTTAGGGTTCTCACTGTGC+AGG | 0.492508 | 2.4:+220774 | MS.gene067498:intron |
GAACTTACGTTCCGATAGGT+TGG | 0.493936 | 2.4:-220810 | None:intergenic |
CCGATAGGTTGGGCAATTTG+GGG | 0.497185 | 2.4:-220799 | None:intergenic |
TCTACACCGGACCAACACTT+GGG | 0.501683 | 2.4:+212910 | MS.gene067498:CDS |
AGAACTTGAGTTAACTCAAT+CGG | 0.503816 | 2.4:+216990 | MS.gene067498:CDS |
AGGGAATGGTTGAAGAAAGA+AGG | 0.503994 | 2.4:-212693 | None:intergenic |
AACCCAGATATCGATGTTTG+TGG | 0.505182 | 2.4:+218472 | MS.gene067498:CDS |
ATGGTGCATGGGAAAAGAAA+TGG | 0.517232 | 2.4:+218702 | MS.gene067498:CDS |
CCCCAAATTGCCCAACCTAT+CGG | 0.522798 | 2.4:+220799 | MS.gene067498:CDS |
TGTGGTTGTTGGATGGTGCA+TGG | 0.523510 | 2.4:+218690 | MS.gene067498:CDS |
GGATGTGCATTCTTTACTGG+TGG | 0.525607 | 2.4:+213065 | MS.gene067498:CDS |
TTTGCTGATTCGTCTGGTGA+GGG | 0.529052 | 2.4:-212712 | None:intergenic |
CAGCTGCTGTTGTCAACTCA+GGG | 0.534453 | 2.4:+213194 | MS.gene067498:CDS |
GGTAGTTGCATTTATGATGC+AGG | 0.540460 | 2.4:+218774 | MS.gene067498:CDS |
GATGTGCATTCTTTACTGGT+GGG | 0.541335 | 2.4:+213066 | MS.gene067498:CDS |
GTGGTTGTTGGATGGTGCAT+GGG | 0.544841 | 2.4:+218691 | MS.gene067498:CDS |
AGAGAAATAGTGCAGGAAGA+TGG | 0.546337 | 2.4:-212796 | None:intergenic |
TACCACAAACATCGATATCT+GGG | 0.548709 | 2.4:-218474 | None:intergenic |
TGTATCTGCTGGTGACAAGA+TGG | 0.555992 | 2.4:+212527 | MS.gene067498:CDS |
CTACACCGGACCAACACTTG+GGG | 0.556277 | 2.4:+212911 | MS.gene067498:CDS |
CAGATGGGTTCTGTATCTGC+TGG | 0.559787 | 2.4:+212516 | None:intergenic |
TGATTCGTCTGGTGAGGGAA+TGG | 0.564065 | 2.4:-212707 | None:intergenic |
GACTTCTAAGTTGAAAGTAA+AGG | 0.565138 | 2.4:-213354 | None:intergenic |
CCATCCAACAACCACACAGA+AGG | 0.567175 | 2.4:-218683 | None:intergenic |
ATACCTTGTGGATGCCATAG+AGG | 0.575475 | 2.4:+217065 | MS.gene067498:CDS |
TGAGTGAAATGAAGCACGGC+GGG | 0.575534 | 2.4:-213250 | None:intergenic |
TACACCGGACCAACACTTGG+GGG | 0.575655 | 2.4:+212912 | MS.gene067498:CDS |
CGATAGGTTGGGCAATTTGG+GGG | 0.583318 | 2.4:-220798 | None:intergenic |
GTAGCAGTATTAGCAGATGA+AGG | 0.585714 | 2.4:-212591 | None:intergenic |
TTCCTGCACTATTTCTCTGG+CGG | 0.587848 | 2.4:+212801 | MS.gene067498:CDS |
TAACCTAGACGTTCAGCCAA+AGG | 0.591654 | 2.4:-212867 | None:intergenic |
GATAGGTTGGGCAATTTGGG+GGG | 0.593622 | 2.4:-220797 | None:intergenic |
CATCCAACAACCACACAGAA+GGG | 0.594191 | 2.4:-218682 | None:intergenic |
GAGCAACTTGCTTTCTACAC+CGG | 0.596724 | 2.4:+212897 | MS.gene067498:CDS |
GAAGGTGAAGTTGAACTGAA+AGG | 0.597192 | 2.4:-212573 | None:intergenic |
TTCCGCCAGAGAAATAGTGC+AGG | 0.598512 | 2.4:-212803 | None:intergenic |
GAAGATGGCCAAAGGACCAA+AGG | 0.600542 | 2.4:-212781 | None:intergenic |
AAAGTAAAGGTAGCTTGCAT+AGG | 0.600612 | 2.4:-213341 | None:intergenic |
AAGATGGCCAAAGGACCAAA+GGG | 0.603293 | 2.4:-212780 | None:intergenic |
AAATCTTGATAGAGATAAGA+CGG | 0.604817 | 2.4:-213296 | None:intergenic |
AGCAATACCCAATAAGGCGA+AGG | 0.611495 | 2.4:-212844 | None:intergenic |
GTACATGTAGACCCTAAAAG+TGG | 0.612173 | 2.4:+220061 | MS.gene067498:CDS |
CAGTAAAGAATGCACATCCA+AGG | 0.612732 | 2.4:-213061 | None:intergenic |
GAATCGAAATGAAAAGAGTG+TGG | 0.615322 | 2.4:-212636 | None:intergenic |
GGACTTCCCAAGATGAACTT+CGG | 0.619090 | 2.4:-213275 | None:intergenic |
ATCCAACAACCACACAGAAG+GGG | 0.630450 | 2.4:-218681 | None:intergenic |
TGAATCATTGAATATGTCAG+TGG | 0.638115 | 2.4:+218256 | MS.gene067498:CDS |
TAGCAGCTGCATAATGCTAG+TGG | 0.640892 | 2.4:+213318 | MS.gene067498:CDS |
GGTGTAGAAAGCAAGTTGCT+CGG | 0.647936 | 2.4:-212895 | None:intergenic |
TCCAGAACTTACGTTCCGAT+AGG | 0.648267 | 2.4:-220814 | None:intergenic |
TAGTGCAGGAAGATGGCCAA+AGG | 0.652333 | 2.4:-212789 | None:intergenic |
AAGTGAAAACTCTGACGAGG+AGG | 0.660035 | 2.4:+216966 | MS.gene067498:CDS |
TTTGTAGATCCCCTTCTGTG+TGG | 0.673448 | 2.4:+218672 | MS.gene067498:intron |
AGTGTTGTCTGGATACCTTG+TGG | 0.676735 | 2.4:+217053 | MS.gene067498:CDS |
GGAGTGAGTGAAATGAAGCA+CGG | 0.679307 | 2.4:-213254 | None:intergenic |
ATACCTCTATGGCATCCACA+AGG | 0.684822 | 2.4:-217068 | None:intergenic |
TACAAGTGAAAACTCTGACG+AGG | 0.708110 | 2.4:+216963 | MS.gene067498:CDS |
GATAGCACTTGCATGCTCTG+CGG | 0.744200 | 2.4:-218318 | None:intergenic |
GTGAGTGAAATGAAGCACGG+CGG | 0.755080 | 2.4:-213251 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 212519 | 221433 | 212519 | ID=MS.gene067498 |
chr2.4 | mRNA | 212519 | 221433 | 212519 | ID=MS.gene067498.t1;Parent=MS.gene067498 |
chr2.4 | exon | 212519 | 213124 | 212519 | ID=MS.gene067498.t1.exon1;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 212519 | 213124 | 212519 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 213193 | 213405 | 213193 | ID=MS.gene067498.t1.exon2;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 213193 | 213405 | 213193 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 216955 | 217086 | 216955 | ID=MS.gene067498.t1.exon3;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 216955 | 217086 | 216955 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 218248 | 218364 | 218248 | ID=MS.gene067498.t1.exon4;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 218248 | 218364 | 218248 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 218440 | 218493 | 218440 | ID=MS.gene067498.t1.exon5;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 218440 | 218493 | 218440 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 218679 | 218795 | 218679 | ID=MS.gene067498.t1.exon6;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 218679 | 218795 | 218679 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 219989 | 220082 | 219989 | ID=MS.gene067498.t1.exon7;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 219989 | 220082 | 219989 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 220780 | 220824 | 220780 | ID=MS.gene067498.t1.exon8;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 220780 | 220824 | 220780 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
chr2.4 | exon | 221417 | 221433 | 221417 | ID=MS.gene067498.t1.exon9;Parent=MS.gene067498.t1 |
chr2.4 | CDS | 221417 | 221433 | 221417 | ID=cds.MS.gene067498.t1;Parent=MS.gene067498.t1 |
Gene Sequence |
Protein sequence |