Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99860.t1 | XP_013465643.1 | 90.6 | 445 | 33 | 2 | 1 | 441 | 1 | 440 | 5.10E-205 | 723.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99860.t1 | Q5KQN0 | 76.7 | 377 | 83 | 2 | 68 | 440 | 58 | 433 | 2.2e-156 | 553.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99860.t1 | A0A072VCB3 | 90.6 | 445 | 33 | 2 | 1 | 441 | 1 | 440 | 3.7e-205 | 723.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049807 | MS.gene99860 | 0.812088 | 5.06E-51 | -1.69E-46 |
MS.gene050257 | MS.gene99860 | 0.814102 | 1.83E-51 | -1.69E-46 |
MS.gene050258 | MS.gene99860 | 0.824554 | 7.58E-54 | -1.69E-46 |
MS.gene050562 | MS.gene99860 | 0.804134 | 2.50E-49 | -1.69E-46 |
MS.gene051279 | MS.gene99860 | 0.800158 | 1.64E-48 | -1.69E-46 |
MS.gene051538 | MS.gene99860 | 0.806097 | 9.71E-50 | -1.69E-46 |
MS.gene051744 | MS.gene99860 | 0.804013 | 2.65E-49 | -1.69E-46 |
MS.gene051959 | MS.gene99860 | 0.812525 | 4.06E-51 | -1.69E-46 |
MS.gene051960 | MS.gene99860 | 0.814956 | 1.18E-51 | -1.69E-46 |
MS.gene052016 | MS.gene99860 | 0.825483 | 4.57E-54 | -1.69E-46 |
MS.gene052307 | MS.gene99860 | 0.818118 | 2.32E-52 | -1.69E-46 |
MS.gene052533 | MS.gene99860 | 0.852956 | 3.28E-61 | -1.69E-46 |
MS.gene052609 | MS.gene99860 | 0.823137 | 1.63E-53 | -1.69E-46 |
MS.gene053143 | MS.gene99860 | 0.814968 | 1.18E-51 | -1.69E-46 |
MS.gene053620 | MS.gene99860 | 0.816248 | 6.10E-52 | -1.69E-46 |
MS.gene054178 | MS.gene99860 | 0.829684 | 4.49E-55 | -1.69E-46 |
MS.gene05454 | MS.gene99860 | 0.840555 | 8.10E-58 | -1.69E-46 |
MS.gene054892 | MS.gene99860 | 0.844958 | 5.47E-59 | -1.69E-46 |
MS.gene054893 | MS.gene99860 | 0.840121 | 1.05E-57 | -1.69E-46 |
MS.gene055229 | MS.gene99860 | 0.8037 | 3.08E-49 | -1.69E-46 |
MS.gene055386 | MS.gene99860 | 0.847143 | 1.39E-59 | -1.69E-46 |
MS.gene056677 | MS.gene99860 | 0.840144 | 1.04E-57 | -1.69E-46 |
MS.gene056699 | MS.gene99860 | 0.810689 | 1.02E-50 | -1.69E-46 |
MS.gene05686 | MS.gene99860 | 0.821543 | 3.82E-53 | -1.69E-46 |
MS.gene057102 | MS.gene99860 | 0.81742 | 3.33E-52 | -1.69E-46 |
MS.gene057174 | MS.gene99860 | 0.802251 | 6.13E-49 | -1.69E-46 |
MS.gene057329 | MS.gene99860 | 0.824773 | 6.73E-54 | -1.69E-46 |
MS.gene057344 | MS.gene99860 | 0.826295 | 2.93E-54 | -1.69E-46 |
MS.gene058095 | MS.gene99860 | 0.830192 | 3.37E-55 | -1.69E-46 |
MS.gene058289 | MS.gene99860 | 0.805927 | 1.05E-49 | -1.69E-46 |
MS.gene058649 | MS.gene99860 | 0.817302 | 3.54E-52 | -1.69E-46 |
MS.gene05952 | MS.gene99860 | 0.80213 | 6.49E-49 | -1.69E-46 |
MS.gene059634 | MS.gene99860 | 0.834661 | 2.63E-56 | -1.69E-46 |
MS.gene059774 | MS.gene99860 | 0.811615 | 6.41E-51 | -1.69E-46 |
MS.gene05985 | MS.gene99860 | -0.833657 | 4.70E-56 | -1.69E-46 |
MS.gene059965 | MS.gene99860 | 0.81251 | 4.09E-51 | -1.69E-46 |
MS.gene060522 | MS.gene99860 | 0.846904 | 1.62E-59 | -1.69E-46 |
MS.gene060697 | MS.gene99860 | 0.808319 | 3.28E-50 | -1.69E-46 |
MS.gene060933 | MS.gene99860 | 0.809187 | 2.14E-50 | -1.69E-46 |
MS.gene061100 | MS.gene99860 | 0.803249 | 3.81E-49 | -1.69E-46 |
MS.gene061188 | MS.gene99860 | 0.805789 | 1.13E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene99860 | MS.gene83511 | PPI |
MS.gene99860 | MS.gene067498 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99860.t1 | MTR_2g105640 | 95.281 | 445 | 12 | 4 | 1 | 441 | 1 | 440 | 0.0 | 837 |
MS.gene99860.t1 | MTR_3g082180 | 60.345 | 406 | 144 | 5 | 49 | 438 | 25 | 429 | 7.77e-163 | 467 |
MS.gene99860.t1 | MTR_7g068380 | 47.059 | 425 | 198 | 7 | 30 | 439 | 23 | 435 | 2.03e-104 | 318 |
MS.gene99860.t1 | MTR_4g016720 | 42.299 | 435 | 239 | 5 | 8 | 435 | 2 | 431 | 1.05e-103 | 317 |
MS.gene99860.t1 | MTR_5g070330 | 44.773 | 440 | 212 | 9 | 14 | 439 | 4 | 426 | 4.72e-102 | 311 |
MS.gene99860.t1 | MTR_8g033030 | 65.517 | 58 | 20 | 0 | 136 | 193 | 30 | 87 | 2.01e-16 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99860.t1 | AT3G13320 | 67.857 | 420 | 126 | 4 | 27 | 438 | 18 | 436 | 0.0 | 553 |
MS.gene99860.t1 | AT1G55730 | 69.949 | 396 | 106 | 4 | 48 | 438 | 49 | 436 | 0.0 | 548 |
MS.gene99860.t1 | AT1G55730 | 69.949 | 396 | 106 | 4 | 48 | 438 | 49 | 436 | 0.0 | 548 |
MS.gene99860.t1 | AT1G55720 | 66.838 | 389 | 116 | 5 | 70 | 448 | 75 | 460 | 4.86e-179 | 509 |
MS.gene99860.t1 | AT1G55720 | 68.170 | 377 | 112 | 4 | 70 | 441 | 75 | 448 | 2.04e-178 | 507 |
MS.gene99860.t1 | AT5G01490 | 47.537 | 406 | 200 | 6 | 47 | 440 | 38 | 442 | 3.19e-115 | 346 |
MS.gene99860.t1 | AT5G01490 | 47.537 | 406 | 200 | 6 | 47 | 440 | 38 | 442 | 3.19e-115 | 346 |
MS.gene99860.t1 | AT2G38170 | 45.131 | 421 | 219 | 6 | 30 | 440 | 20 | 438 | 1.94e-105 | 322 |
MS.gene99860.t1 | AT2G38170 | 44.893 | 421 | 220 | 6 | 30 | 440 | 20 | 438 | 7.04e-105 | 320 |
MS.gene99860.t1 | AT3G51860 | 43.844 | 463 | 228 | 10 | 19 | 459 | 7 | 459 | 2.89e-104 | 318 |
MS.gene99860.t1 | AT3G51860 | 43.341 | 413 | 202 | 10 | 19 | 409 | 7 | 409 | 5.11e-87 | 274 |
MS.gene99860.t1 | AT2G38170 | 43.732 | 343 | 161 | 7 | 30 | 352 | 20 | 350 | 8.57e-68 | 222 |
Find 98 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCGATAGGTTGGGCAATT+TGG | 0.166335 | 2.1:-293703 | None:intergenic |
CTTGGATGTGCATTCTTTAC+TGG | 0.168249 | 2.1:+285964 | MS.gene99860:CDS |
CTCAATCGGAAGCGATAATT+TGG | 0.177448 | 2.1:+289906 | MS.gene99860:CDS |
TCCGATAGGTTGGGCAATTT+GGG | 0.184061 | 2.1:-293702 | None:intergenic |
CAACTCAGGGTTGTTGTTGA+TGG | 0.270661 | 2.1:+286109 | MS.gene99860:CDS |
CTTACTACCCTTTGGTCCTT+TGG | 0.284264 | 2.1:+285675 | MS.gene99860:CDS |
GGAGAAGATGAAGATGATTT+AGG | 0.288495 | 2.1:-285574 | None:intergenic |
CTCTGGCGGAAAACATGTTT+GGG | 0.294043 | 2.1:+285717 | MS.gene99860:CDS |
TCCAATATGCTTCTTGTCCT+TGG | 0.300655 | 2.1:+285946 | MS.gene99860:CDS |
CTTATTGGGTATTGCTCCTT+TGG | 0.319778 | 2.1:+285753 | MS.gene99860:CDS |
ATACCACAAACATCGATATC+TGG | 0.329138 | 2.1:-291377 | None:intergenic |
CAAAGGAGCAATACCCAATA+AGG | 0.341740 | 2.1:-285752 | None:intergenic |
GGTTTACTTAATGCAACATT+TGG | 0.344265 | 2.1:+285835 | MS.gene99860:CDS |
TCTCTGGCGGAAAACATGTT+TGG | 0.353870 | 2.1:+285716 | MS.gene99860:CDS |
TGCTATCATGTTTGCTGTAA+AGG | 0.362095 | 2.1:+291236 | MS.gene99860:CDS |
GTCATCTTGCTTCCAATTGT+AGG | 0.377243 | 2.1:+291192 | MS.gene99860:CDS |
ATCCCCTTCTGTGTGGTTGT+TGG | 0.381081 | 2.1:+291581 | MS.gene99860:CDS |
TCCAAGGACAAGAAGCATAT+TGG | 0.388568 | 2.1:-285947 | None:intergenic |
AAAGAAGGAACCTGGTCAAC+TGG | 0.393990 | 2.1:-286296 | None:intergenic |
TGTTCACTACAATAAACTTC+AGG | 0.394259 | 2.1:+285993 | MS.gene99860:CDS |
ATCTTCCTGCACTATTTCTC+TGG | 0.396428 | 2.1:+285700 | MS.gene99860:CDS |
TTTCCACAGGATATCACAAT+TGG | 0.399751 | 2.1:+291333 | MS.gene99860:intron |
CAAGCCTTTAAAATAATTTG+AGG | 0.409091 | 2.1:-292898 | None:intergenic |
ACTCACTCCGAAGTTCATCT+TGG | 0.409420 | 2.1:+286170 | MS.gene99860:CDS |
TCTGCGGCATTTCCTACAAT+TGG | 0.429263 | 2.1:-291204 | None:intergenic |
ATCAACATCTTACTACCCTT+TGG | 0.435660 | 2.1:+285667 | MS.gene99860:CDS |
GTTGTTCAGCAATCTTTACT+TGG | 0.446219 | 2.1:+285913 | MS.gene99860:CDS |
TTCTACACCGGACCAACACT+TGG | 0.453893 | 2.1:+285811 | MS.gene99860:CDS |
AACTTACGTTCCGATAGGTT+GGG | 0.460858 | 2.1:-293711 | None:intergenic |
GTTGTTGTTGATGGCTGTAA+TGG | 0.461660 | 2.1:+286118 | MS.gene99860:CDS |
CTCACTCCGAAGTTCATCTT+GGG | 0.462664 | 2.1:+286171 | MS.gene99860:CDS |
GATTGGTTACTTTGCCGAAA+AGG | 0.464500 | 2.1:-294317 | None:intergenic |
ATCACAATTGGAGTTGCTGT+TGG | 0.467118 | 2.1:+291345 | MS.gene99860:CDS |
TTGTTGTTGATGGCTGTAAT+GGG | 0.471034 | 2.1:+286119 | MS.gene99860:CDS |
GCAGCTGCTGTTGTCAACTC+AGG | 0.475580 | 2.1:+286095 | MS.gene99860:CDS |
CCTTCTGTGTGGTTGTTGGA+TGG | 0.484096 | 2.1:+291585 | MS.gene99860:CDS |
GCTCCTTTGGCTGAACGTCT+AGG | 0.490124 | 2.1:+285766 | MS.gene99860:CDS |
ACTGTACAGCTATACCTCTA+TGG | 0.490233 | 2.1:-289981 | None:intergenic |
GTATGGGTATCAGTGTTGTC+TGG | 0.492249 | 2.1:+289944 | MS.gene99860:CDS |
ATTTAGGGTTCTCACTGTGC+AGG | 0.492508 | 2.1:+293676 | MS.gene99860:intron |
GAACTTACGTTCCGATAGGT+TGG | 0.493936 | 2.1:-293712 | None:intergenic |
CCGATAGGTTGGGCAATTTG+GGG | 0.497185 | 2.1:-293701 | None:intergenic |
TCTACACCGGACCAACACTT+GGG | 0.501683 | 2.1:+285812 | MS.gene99860:CDS |
AGAACTTGAGTTAACTCAAT+CGG | 0.503816 | 2.1:+289892 | MS.gene99860:CDS |
AGGGAATGGTTGAAGAAAGA+AGG | 0.503994 | 2.1:-285595 | None:intergenic |
AACCCAGATATCGATGTTTG+TGG | 0.505182 | 2.1:+291374 | MS.gene99860:CDS |
ATGGTGCATGGGAAAAGAAA+TGG | 0.517232 | 2.1:+291604 | MS.gene99860:CDS |
CCCCAAATTGCCCAACCTAT+CGG | 0.522798 | 2.1:+293701 | MS.gene99860:CDS |
TGTGGTTGTTGGATGGTGCA+TGG | 0.523510 | 2.1:+291592 | MS.gene99860:CDS |
GGATGTGCATTCTTTACTGG+TGG | 0.525607 | 2.1:+285967 | MS.gene99860:CDS |
TTTGCTGATTCGTCTGGTGA+GGG | 0.529052 | 2.1:-285614 | None:intergenic |
CAGCTGCTGTTGTCAACTCA+GGG | 0.534453 | 2.1:+286096 | MS.gene99860:CDS |
GGTAGTTGCATTTATGATGC+AGG | 0.540460 | 2.1:+291676 | MS.gene99860:CDS |
GATGTGCATTCTTTACTGGT+GGG | 0.541335 | 2.1:+285968 | MS.gene99860:CDS |
GTGGTTGTTGGATGGTGCAT+GGG | 0.544841 | 2.1:+291593 | MS.gene99860:CDS |
AGAGAAATAGTGCAGGAAGA+TGG | 0.546337 | 2.1:-285698 | None:intergenic |
TACCACAAACATCGATATCT+GGG | 0.548709 | 2.1:-291376 | None:intergenic |
TGTATCTGCTGGTGACAAGA+TGG | 0.555992 | 2.1:+285429 | MS.gene99860:CDS |
CTACACCGGACCAACACTTG+GGG | 0.556277 | 2.1:+285813 | MS.gene99860:CDS |
CAGATGGGTTCTGTATCTGC+TGG | 0.559787 | 2.1:+285418 | None:intergenic |
TGATTCGTCTGGTGAGGGAA+TGG | 0.564065 | 2.1:-285609 | None:intergenic |
GACTTCTAAGTTGAAAGTAA+AGG | 0.565138 | 2.1:-286256 | None:intergenic |
CCATCCAACAACCACACAGA+AGG | 0.567175 | 2.1:-291585 | None:intergenic |
ATACCTTGTGGATGCCATAG+AGG | 0.575475 | 2.1:+289967 | MS.gene99860:CDS |
TGAGTGAAATGAAGCACGGC+GGG | 0.575534 | 2.1:-286152 | None:intergenic |
TACACCGGACCAACACTTGG+GGG | 0.575655 | 2.1:+285814 | MS.gene99860:CDS |
GTAGCAGTATTAGCAGATGA+AGG | 0.582106 | 2.1:-285493 | None:intergenic |
CGATAGGTTGGGCAATTTGG+GGG | 0.583318 | 2.1:-293700 | None:intergenic |
TTCCTGCACTATTTCTCTGG+CGG | 0.587848 | 2.1:+285703 | MS.gene99860:CDS |
TAACCTAGACGTTCAGCCAA+AGG | 0.591654 | 2.1:-285769 | None:intergenic |
GATAGGTTGGGCAATTTGGG+GGG | 0.593622 | 2.1:-293699 | None:intergenic |
CATCCAACAACCACACAGAA+GGG | 0.594191 | 2.1:-291584 | None:intergenic |
GAGCAACTTGCTTTCTACAC+CGG | 0.596724 | 2.1:+285799 | MS.gene99860:CDS |
GAAGGTGAAGTTGAACTGAA+AGG | 0.597192 | 2.1:-285475 | None:intergenic |
TTCCGCCAGAGAAATAGTGC+AGG | 0.598512 | 2.1:-285705 | None:intergenic |
GAAGATGGCCAAAGGACCAA+AGG | 0.600542 | 2.1:-285683 | None:intergenic |
AAAGTAAAGGTAGCTTGCAT+AGG | 0.600612 | 2.1:-286243 | None:intergenic |
AAGATGGCCAAAGGACCAAA+GGG | 0.603293 | 2.1:-285682 | None:intergenic |
AAATCTTGATAGAGATAAGA+CGG | 0.604817 | 2.1:-286198 | None:intergenic |
AGCAATACCCAATAAGGCGA+AGG | 0.611495 | 2.1:-285746 | None:intergenic |
GTACATGTAGACCCTAAAAG+TGG | 0.612173 | 2.1:+292963 | MS.gene99860:CDS |
CAGTAAAGAATGCACATCCA+AGG | 0.612732 | 2.1:-285963 | None:intergenic |
GAATCGAAATGAAAAGAGTG+TGG | 0.615322 | 2.1:-285538 | None:intergenic |
GGACTTCCCAAGATGAACTT+CGG | 0.619090 | 2.1:-286177 | None:intergenic |
ATCCAACAACCACACAGAAG+GGG | 0.630450 | 2.1:-291583 | None:intergenic |
TGAATCATTGAATATGTCAG+TGG | 0.638115 | 2.1:+291158 | MS.gene99860:CDS |
TAGCAGCTGCATAATGCTAG+TGG | 0.640892 | 2.1:+286220 | MS.gene99860:CDS |
GGTGTAGAAAGCAAGTTGCT+CGG | 0.647936 | 2.1:-285797 | None:intergenic |
TCCAGAACTTACGTTCCGAT+AGG | 0.648267 | 2.1:-293716 | None:intergenic |
TAGTGCAGGAAGATGGCCAA+AGG | 0.652333 | 2.1:-285691 | None:intergenic |
AAGTGAAAACTCTGACGAGG+AGG | 0.660035 | 2.1:+289868 | MS.gene99860:CDS |
TTTGTAGATCCCCTTCTGTG+TGG | 0.673448 | 2.1:+291574 | MS.gene99860:intron |
AGTGTTGTCTGGATACCTTG+TGG | 0.676735 | 2.1:+289955 | MS.gene99860:CDS |
GGAGTGAGTGAAATGAAGCA+CGG | 0.679307 | 2.1:-286156 | None:intergenic |
ATACCTCTATGGCATCCACA+AGG | 0.684822 | 2.1:-289970 | None:intergenic |
TACAAGTGAAAACTCTGACG+AGG | 0.708110 | 2.1:+289865 | MS.gene99860:CDS |
GATAGCACTTGCATGCTCTG+CGG | 0.744200 | 2.1:-291220 | None:intergenic |
GTGAGTGAAATGAAGCACGG+CGG | 0.755080 | 2.1:-286153 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 285421 | 294333 | 285421 | ID=MS.gene99860 |
chr2.1 | mRNA | 285421 | 294333 | 285421 | ID=MS.gene99860.t1;Parent=MS.gene99860 |
chr2.1 | exon | 285421 | 286014 | 285421 | ID=MS.gene99860.t1.exon1;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 285421 | 286014 | 285421 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 286095 | 286307 | 286095 | ID=MS.gene99860.t1.exon2;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 286095 | 286307 | 286095 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 289857 | 289988 | 289857 | ID=MS.gene99860.t1.exon3;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 289857 | 289988 | 289857 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 291150 | 291266 | 291150 | ID=MS.gene99860.t1.exon4;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 291150 | 291266 | 291150 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 291342 | 291395 | 291342 | ID=MS.gene99860.t1.exon5;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 291342 | 291395 | 291342 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 291581 | 291697 | 291581 | ID=MS.gene99860.t1.exon6;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 291581 | 291697 | 291581 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 292891 | 292984 | 292891 | ID=MS.gene99860.t1.exon7;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 292891 | 292984 | 292891 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 293682 | 293726 | 293682 | ID=MS.gene99860.t1.exon8;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 293682 | 293726 | 293682 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
chr2.1 | exon | 294317 | 294333 | 294317 | ID=MS.gene99860.t1.exon9;Parent=MS.gene99860.t1 |
chr2.1 | CDS | 294317 | 294333 | 294317 | ID=cds.MS.gene99860.t1;Parent=MS.gene99860.t1 |
Gene Sequence |
Protein sequence |