Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83511.t1 | XP_013465643.1 | 91 | 446 | 33 | 1 | 1 | 446 | 1 | 439 | 3.70E-208 | 734.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83511.t1 | Q5KQN0 | 77.7 | 377 | 83 | 1 | 70 | 446 | 58 | 433 | 1.9e-160 | 567.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83511.t1 | A0A072VCB3 | 91.0 | 446 | 33 | 1 | 1 | 446 | 1 | 439 | 2.6e-208 | 734.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene83511 | 0.832729 | 8.01E-56 | -1.69E-46 |
| MS.gene051960 | MS.gene83511 | 0.836904 | 7.12E-57 | -1.69E-46 |
| MS.gene054892 | MS.gene83511 | 0.801607 | 8.32E-49 | -1.69E-46 |
| MS.gene057001 | MS.gene83511 | 0.821937 | 3.10E-53 | -1.69E-46 |
| MS.gene057174 | MS.gene83511 | 0.811211 | 7.84E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99860 | MS.gene83511 | PPI |
| MS.gene067498 | MS.gene83511 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83511.t1 | MTR_2g105640 | 94.395 | 446 | 18 | 2 | 1 | 446 | 1 | 439 | 0.0 | 790 |
| MS.gene83511.t1 | MTR_3g082180 | 60.837 | 406 | 148 | 4 | 49 | 444 | 25 | 429 | 6.21e-168 | 479 |
| MS.gene83511.t1 | MTR_7g068380 | 47.482 | 417 | 214 | 4 | 30 | 445 | 23 | 435 | 5.11e-107 | 325 |
| MS.gene83511.t1 | MTR_4g016720 | 45.614 | 399 | 212 | 4 | 44 | 441 | 37 | 431 | 3.45e-106 | 322 |
| MS.gene83511.t1 | MTR_5g070330 | 44.419 | 430 | 224 | 5 | 21 | 445 | 7 | 426 | 2.20e-105 | 320 |
| MS.gene83511.t1 | MTR_8g033030 | 56.522 | 69 | 30 | 0 | 138 | 206 | 30 | 98 | 7.25e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83511.t1 | AT3G13320 | 70.500 | 400 | 116 | 2 | 46 | 444 | 38 | 436 | 0.0 | 566 |
| MS.gene83511.t1 | AT1G55730 | 69.756 | 410 | 115 | 4 | 43 | 444 | 28 | 436 | 0.0 | 562 |
| MS.gene83511.t1 | AT1G55730 | 69.756 | 410 | 115 | 4 | 43 | 444 | 28 | 436 | 0.0 | 562 |
| MS.gene83511.t1 | AT1G55720 | 69.251 | 374 | 111 | 3 | 72 | 444 | 75 | 445 | 0.0 | 518 |
| MS.gene83511.t1 | AT1G55720 | 69.251 | 374 | 111 | 3 | 72 | 444 | 75 | 445 | 0.0 | 518 |
| MS.gene83511.t1 | AT5G01490 | 47.783 | 406 | 205 | 4 | 47 | 446 | 38 | 442 | 1.59e-119 | 357 |
| MS.gene83511.t1 | AT5G01490 | 47.783 | 406 | 205 | 4 | 47 | 446 | 38 | 442 | 1.59e-119 | 357 |
| MS.gene83511.t1 | AT2G38170 | 44.419 | 439 | 223 | 5 | 23 | 446 | 6 | 438 | 1.29e-110 | 334 |
| MS.gene83511.t1 | AT2G38170 | 44.191 | 439 | 224 | 5 | 23 | 446 | 6 | 438 | 3.94e-110 | 333 |
| MS.gene83511.t1 | AT3G51860 | 45.000 | 440 | 222 | 8 | 19 | 445 | 7 | 439 | 1.74e-107 | 326 |
| MS.gene83511.t1 | AT3G51860 | 43.902 | 410 | 210 | 8 | 19 | 415 | 7 | 409 | 1.18e-91 | 285 |
| MS.gene83511.t1 | AT2G38170 | 43.020 | 351 | 179 | 5 | 23 | 358 | 6 | 350 | 8.99e-73 | 234 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGATGTGCATTCTTTAC+TGG | 0.168249 | 2.2:+195002 | MS.gene83511:CDS |
| CTCAATCGGAAGCGATAATT+TGG | 0.177448 | 2.2:+198941 | MS.gene83511:CDS |
| CAACTCAGGGTTGTTGTTGA+TGG | 0.270661 | 2.2:+195147 | MS.gene83511:CDS |
| CTTACTACCCTTTGGTCCTT+TGG | 0.284264 | 2.2:+194713 | MS.gene83511:CDS |
| CTCTGGCGGAAAACATGTTT+GGG | 0.294043 | 2.2:+194755 | MS.gene83511:CDS |
| TCCAATATGCTTCTTGTCCT+TGG | 0.300655 | 2.2:+194984 | MS.gene83511:CDS |
| CTTATTGGGTATTGCTCCTT+TGG | 0.319778 | 2.2:+194791 | MS.gene83511:CDS |
| ATACCACAAACATCGATATC+TGG | 0.329138 | 2.2:-200412 | None:intergenic |
| CAAAGGAGCAATACCCAATA+AGG | 0.341740 | 2.2:-194790 | None:intergenic |
| GGTTTACTTAATGCAACATT+TGG | 0.344265 | 2.2:+194873 | MS.gene83511:CDS |
| TCTCTGGCGGAAAACATGTT+TGG | 0.353870 | 2.2:+194754 | MS.gene83511:CDS |
| TGCTATCATGTTTGCTGTAA+AGG | 0.362095 | 2.2:+200271 | MS.gene83511:CDS |
| GTCATCTTGCTTCCAATTGT+AGG | 0.377243 | 2.2:+200227 | MS.gene83511:CDS |
| ATCCCCTTCTGTGTGGTTGT+TGG | 0.381081 | 2.2:+200616 | MS.gene83511:CDS |
| TCCAAGGACAAGAAGCATAT+TGG | 0.388568 | 2.2:-194985 | None:intergenic |
| AAAGAAGGAACCTGGTCAAC+TGG | 0.393990 | 2.2:-195334 | None:intergenic |
| TGTTCACTACAATAAACTTC+AGG | 0.394259 | 2.2:+195031 | MS.gene83511:CDS |
| ATCTTCCTGCACTATTTCTC+TGG | 0.396428 | 2.2:+194738 | MS.gene83511:CDS |
| TTTCCACAGGATATCACAAT+TGG | 0.399751 | 2.2:+200368 | MS.gene83511:intron |
| CAAGCCTTTAAAATAATTTG+AGG | 0.409091 | 2.2:-201933 | None:intergenic |
| ACTCACTCCGAAGTTCATCT+TGG | 0.409420 | 2.2:+195208 | MS.gene83511:CDS |
| TCTGCGGCATTTCCTACAAT+TGG | 0.429263 | 2.2:-200239 | None:intergenic |
| ATCAACATCTTACTACCCTT+TGG | 0.435660 | 2.2:+194705 | MS.gene83511:CDS |
| GTTGTTCAGCAATCTTTACT+TGG | 0.446219 | 2.2:+194951 | MS.gene83511:CDS |
| TTCTACACCGGACCAACACT+TGG | 0.453893 | 2.2:+194849 | MS.gene83511:CDS |
| GTTGTTGTTGATGGCTGTAA+TGG | 0.461660 | 2.2:+195156 | MS.gene83511:CDS |
| CTCACTCCGAAGTTCATCTT+GGG | 0.462664 | 2.2:+195209 | MS.gene83511:CDS |
| ATCACAATTGGAGTTGCTGT+TGG | 0.467118 | 2.2:+200380 | MS.gene83511:CDS |
| TTGTTGTTGATGGCTGTAAT+GGG | 0.471034 | 2.2:+195157 | MS.gene83511:CDS |
| GCAGCTGCTGTTGTCAACTC+AGG | 0.475580 | 2.2:+195133 | MS.gene83511:CDS |
| CCTTCTGTGTGGTTGTTGGA+TGG | 0.484096 | 2.2:+200620 | MS.gene83511:CDS |
| GCTCCTTTGGCTGAACGTCT+AGG | 0.490124 | 2.2:+194804 | MS.gene83511:CDS |
| ACTGTACAGCTATACCTCTA+TGG | 0.490233 | 2.2:-199016 | None:intergenic |
| GTATGGGTATCAGTGTTGTC+TGG | 0.492249 | 2.2:+198979 | MS.gene83511:CDS |
| TCTACACCGGACCAACACTT+GGG | 0.501683 | 2.2:+194850 | MS.gene83511:CDS |
| AGAACTTGAGTTAACTCAAT+CGG | 0.503816 | 2.2:+198927 | MS.gene83511:CDS |
| AGGGAATGGTTGAAGAAAGA+AGG | 0.503994 | 2.2:-194633 | None:intergenic |
| AACCCAGATATCGATGTTTG+TGG | 0.505182 | 2.2:+200409 | MS.gene83511:CDS |
| ATGGTGCATGGGAAAAGAAA+TGG | 0.517232 | 2.2:+200639 | MS.gene83511:CDS |
| TGTGGTTGTTGGATGGTGCA+TGG | 0.523510 | 2.2:+200627 | MS.gene83511:CDS |
| GGATGTGCATTCTTTACTGG+TGG | 0.525607 | 2.2:+195005 | MS.gene83511:CDS |
| TTTGCTGATTCGTCTGGTGA+GGG | 0.529052 | 2.2:-194652 | None:intergenic |
| CAGCTGCTGTTGTCAACTCA+GGG | 0.534453 | 2.2:+195134 | MS.gene83511:CDS |
| GGTAGTTGCATTTATGATGC+AGG | 0.540460 | 2.2:+200711 | MS.gene83511:CDS |
| GATGTGCATTCTTTACTGGT+GGG | 0.541335 | 2.2:+195006 | MS.gene83511:CDS |
| GTGGTTGTTGGATGGTGCAT+GGG | 0.544841 | 2.2:+200628 | MS.gene83511:CDS |
| AGAGAAATAGTGCAGGAAGA+TGG | 0.546337 | 2.2:-194736 | None:intergenic |
| TACCACAAACATCGATATCT+GGG | 0.548709 | 2.2:-200411 | None:intergenic |
| TGTATCTGCTGGTGACAAGA+TGG | 0.555992 | 2.2:+194461 | MS.gene83511:CDS |
| CTACACCGGACCAACACTTG+GGG | 0.556277 | 2.2:+194851 | MS.gene83511:CDS |
| CAGATGGGTTCTGTATCTGC+TGG | 0.559787 | 2.2:+194450 | None:intergenic |
| TGATTCGTCTGGTGAGGGAA+TGG | 0.564065 | 2.2:-194647 | None:intergenic |
| GACTTCTAAGTTGAAAGTAA+AGG | 0.565138 | 2.2:-195294 | None:intergenic |
| CCATCCAACAACCACACAGA+AGG | 0.567175 | 2.2:-200620 | None:intergenic |
| ATACCTTGTGGATGCCATAG+AGG | 0.575475 | 2.2:+199002 | MS.gene83511:CDS |
| TGAGTGAAATGAAGCACGGC+GGG | 0.575534 | 2.2:-195190 | None:intergenic |
| TACACCGGACCAACACTTGG+GGG | 0.575655 | 2.2:+194852 | MS.gene83511:CDS |
| GTAGCAGTATTAGCAGATGA+AGG | 0.585714 | 2.2:-194525 | None:intergenic |
| TTCCTGCACTATTTCTCTGG+CGG | 0.587848 | 2.2:+194741 | MS.gene83511:CDS |
| TAACCTAGACGTTCAGCCAA+AGG | 0.591654 | 2.2:-194807 | None:intergenic |
| CATCCAACAACCACACAGAA+GGG | 0.594191 | 2.2:-200619 | None:intergenic |
| GAGCAACTTGCTTTCTACAC+CGG | 0.596724 | 2.2:+194837 | MS.gene83511:CDS |
| GAAGGTGAAGTTGAACTGAA+AGG | 0.597192 | 2.2:-194507 | None:intergenic |
| TTCCGCCAGAGAAATAGTGC+AGG | 0.598512 | 2.2:-194743 | None:intergenic |
| GAAGATGGCCAAAGGACCAA+AGG | 0.600542 | 2.2:-194721 | None:intergenic |
| AAAGTAAAGGTAGCTTGCAT+AGG | 0.600612 | 2.2:-195281 | None:intergenic |
| AAGATGGCCAAAGGACCAAA+GGG | 0.603293 | 2.2:-194720 | None:intergenic |
| AAATCTTGATAGAGATAAGA+CGG | 0.604817 | 2.2:-195236 | None:intergenic |
| AGCAATACCCAATAAGGCGA+AGG | 0.611495 | 2.2:-194784 | None:intergenic |
| GTACATGTAGACCCTAAAAG+TGG | 0.612173 | 2.2:+201998 | MS.gene83511:CDS |
| CAGTAAAGAATGCACATCCA+AGG | 0.612732 | 2.2:-195001 | None:intergenic |
| GAATCGAAATGAAAAGAGTG+TGG | 0.615322 | 2.2:-194570 | None:intergenic |
| GGACTTCCCAAGATGAACTT+CGG | 0.619090 | 2.2:-195215 | None:intergenic |
| ATCCAACAACCACACAGAAG+GGG | 0.630450 | 2.2:-200618 | None:intergenic |
| TGAATCATTGAATATGTCAG+TGG | 0.638115 | 2.2:+200193 | MS.gene83511:CDS |
| TAGCAGCTGCATAATGCTAG+TGG | 0.640892 | 2.2:+195258 | MS.gene83511:CDS |
| GGTGTAGAAAGCAAGTTGCT+CGG | 0.647936 | 2.2:-194835 | None:intergenic |
| TAGTGCAGGAAGATGGCCAA+AGG | 0.652333 | 2.2:-194729 | None:intergenic |
| AAGTGAAAACTCTGACGAGG+AGG | 0.660035 | 2.2:+198903 | MS.gene83511:CDS |
| TTTGTAGATCCCCTTCTGTG+TGG | 0.673448 | 2.2:+200609 | MS.gene83511:intron |
| AGTGTTGTCTGGATACCTTG+TGG | 0.676735 | 2.2:+198990 | MS.gene83511:CDS |
| GGAGTGAGTGAAATGAAGCA+CGG | 0.679307 | 2.2:-195194 | None:intergenic |
| ATACCTCTATGGCATCCACA+AGG | 0.684822 | 2.2:-199005 | None:intergenic |
| TACAAGTGAAAACTCTGACG+AGG | 0.708110 | 2.2:+198900 | MS.gene83511:CDS |
| GATAGCACTTGCATGCTCTG+CGG | 0.744200 | 2.2:-200255 | None:intergenic |
| GTGAGTGAAATGAAGCACGG+CGG | 0.755080 | 2.2:-195191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 194453 | 202019 | 194453 | ID=MS.gene83511 |
| chr2.2 | mRNA | 194453 | 202019 | 194453 | ID=MS.gene83511.t1;Parent=MS.gene83511 |
| chr2.2 | exon | 194453 | 195064 | 194453 | ID=MS.gene83511.t1.exon1;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 194453 | 195064 | 194453 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| chr2.2 | exon | 195133 | 195345 | 195133 | ID=MS.gene83511.t1.exon2;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 195133 | 195345 | 195133 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| chr2.2 | exon | 198892 | 199023 | 198892 | ID=MS.gene83511.t1.exon3;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 198892 | 199023 | 198892 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| chr2.2 | exon | 200185 | 200301 | 200185 | ID=MS.gene83511.t1.exon4;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 200185 | 200301 | 200185 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| chr2.2 | exon | 200377 | 200430 | 200377 | ID=MS.gene83511.t1.exon5;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 200377 | 200430 | 200377 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| chr2.2 | exon | 200616 | 200732 | 200616 | ID=MS.gene83511.t1.exon6;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 200616 | 200732 | 200616 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| chr2.2 | exon | 201926 | 202019 | 201926 | ID=MS.gene83511.t1.exon7;Parent=MS.gene83511.t1 |
| chr2.2 | CDS | 201926 | 202019 | 201926 | ID=cds.MS.gene83511.t1;Parent=MS.gene83511.t1 |
| Gene Sequence |
| Protein sequence |