AlfalfaGEDB | MS.gene067614

M. sativa cultivar XinJiangDaYe / MS.gene067614

KEGG: K14509
GO: GO:0000155 GO:0000160 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005789 GO:0006793 GO:0006796 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0031090 GO:0035556 GO:0038023 GO:0038199 GO:0042221 GO:0042562 GO:0044237 GO:0050789 GO:0050794 GO:0050896 GO:0051740 GO:0060089 GO:0065007 GO:0072328 GO:0110165 GO:0140096 GO:0140299
PFAM: PF00072.27 PF00512.28 PF01590.29 PF02518.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067614.t1	AES87618.2	98.1	740	14	0	1	740	51	790	0.00E+00	1407.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067614.t1	O81122	84.2	741	116	1	1	740	1	741	0.0e+00	1216.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067614.t1	G7JKV2	98.1	740	14	0	1	740	51	790	0.0e+00	1407.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene067614.t1	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene027808	MS.gene067614	PPI
MS.gene044915	MS.gene067614	PPI
MS.gene062402	MS.gene067614	PPI
MS.gene067614	MS.gene068604	PPI
MS.gene067614	MS.gene070887	PPI
MS.gene067614	MS.gene069138	PPI
MS.gene067614	MS.gene97518	PPI
MS.gene067614	MS.gene068602	PPI
MS.gene067614	MS.gene053206	PPI
MS.gene067614	MS.gene027810	PPI

Showing 1 to 10 of 12 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067614.t1	MTR_4g031150	98.108	740	14	0	1	740	51	790	0.0	1499
MS.gene067614.t1	MTR_7g109150	74.038	624	158	2	1	622	2	623	0.0	907
MS.gene067614.t1	MTR_1g073840	41.711	748	403	18	4	738	29	756	2.61e-175	521
MS.gene067614.t1	MTR_7g116330	39.653	749	411	16	4	733	34	760	7.51e-165	494
MS.gene067614.t1	MTR_1g079790	37.816	751	429	18	2	733	26	757	2.70e-155	469
MS.gene067614.t1	MTR_1g044210	37.332	742	445	12	4	734	28	760	2.79e-151	459
MS.gene067614.t1	MTR_1g079790	38.704	571	328	11	2	560	26	586	3.00e-119	371
MS.gene067614.t1	MTR_3g085130	28.453	362	212	7	334	654	438	793	7.31e-35	143
MS.gene067614.t1	MTR_3g085130	33.884	121	72	3	611	723	903	1023	6.87e-12	69.7
MS.gene067614.t1	MTR_8g080770	29.155	367	215	8	334	662	383	742	9.89e-35	142

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067614.t1	AT1G66340	79.595	740	145	3	1	738	1	736	0.0	1204
MS.gene067614.t1	AT2G40940	70.608	592	174	0	1	592	1	592	0.0	848
MS.gene067614.t1	AT3G23150	38.421	760	411	18	4	731	32	766	2.14e-150	457
MS.gene067614.t1	AT3G04580	38.255	745	437	16	3	732	26	762	1.68e-148	452
MS.gene067614.t1	AT3G04580	38.255	745	437	16	3	732	26	762	1.68e-148	452
MS.gene067614.t1	AT3G23150	40.806	571	313	12	4	561	32	590	4.89e-125	386
MS.gene067614.t1	AT1G04310	38.966	503	282	9	4	491	34	526	1.26e-96	313
MS.gene067614.t1	AT1G04310	38.966	503	282	9	4	491	34	526	1.26e-96	313
MS.gene067614.t1	AT5G10720	34.146	287	163	8	322	589	339	618	2.01e-37	150
MS.gene067614.t1	AT1G27320	26.566	463	287	10	305	727	412	861	4.17e-34	140

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 153 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGACTCTTGTTGAACT+CGG	0.650784	4.1:-69654519	MS.gene067614:CDS
AAAGAGAACTGTTTGAGAGC+TGG	0.562595	4.1:-69651665	MS.gene067614:CDS
AAATAAAAGTGGCCATCACT+TGG	0.516449	4.1:+69653272	None:intergenic
AAATCATCTGCTGGCCATTG+TGG	0.550408	4.1:+69654984	None:intergenic
AAATTAGAAAGATTTAGGAG+AGG	0.591308	4.1:+69654252	None:intergenic
AACCAGAAGTTATGCTTTGA+TGG	0.307492	4.1:-69654202	MS.gene067614:CDS
AACCATCAAAGCATAACTTC+TGG	0.461708	4.1:+69654200	None:intergenic
AAGAAACTGGTCGACATGTT+AGG	0.407386	4.1:-69654590	MS.gene067614:CDS
AAGGGACTTCTTATCCATTT+AGG	0.238284	4.1:-69651881	MS.gene067614:CDS
AAGTGGCCATCACTTGGTAC+TGG	0.531856	4.1:+69653278	None:intergenic

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTCACAACTGAAGGTA+CGG	+	chr4.1:69653945-69653964	None:intergenic	30.0%
AAGTCAGATGAATTGTTTAG+TGG	-	chr4.1:69654584-69654603	MS.gene067614:CDS	30.0%
AATCAGGAAATCTAATATCG+CGG	+	chr4.1:69653273-69653292	None:intergenic	30.0%
AATGCTGTTCACAATTTAAC+AGG	-	chr4.1:69654281-69654300	MS.gene067614:CDS	30.0%
AGGTCCATGTAAAAGAATTT+CGG	+	chr4.1:69652553-69652572	None:intergenic	30.0%
CAAACTTAGTGAATAACGTT+GGG	+	chr4.1:69653480-69653499	None:intergenic	30.0%
CAAATTCTTCTCAATGTTGT+TGG	-	chr4.1:69653178-69653197	MS.gene067614:intron	30.0%
CTAAATACATGATTGATCAC+AGG	+	chr4.1:69652204-69652223	None:intergenic	30.0%
CTTACTATGAAAAGACTTAC+TGG	-	chr4.1:69654380-69654399	MS.gene067614:CDS	30.0%
GTAACAAATTTCACAACTGA+AGG	+	chr4.1:69653950-69653969	None:intergenic	30.0%

Showing 1 to 10 of 242 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	69651568	69655030	69651568	ID=MS.gene067614
chr4.1	mRNA	69651568	69655030	69651568	ID=MS.gene067614.t1;Parent=MS.gene067614
chr4.1	exon	69654125	69655030	69654125	ID=MS.gene067614.t1.exon1;Parent=MS.gene067614.t1
chr4.1	CDS	69654125	69655030	69654125	ID=cds.MS.gene067614.t1;Parent=MS.gene067614.t1
chr4.1	exon	69653644	69654012	69653644	ID=MS.gene067614.t1.exon2;Parent=MS.gene067614.t1
chr4.1	CDS	69653644	69654012	69653644	ID=cds.MS.gene067614.t1;Parent=MS.gene067614.t1
chr4.1	exon	69653262	69653528	69653262	ID=MS.gene067614.t1.exon3;Parent=MS.gene067614.t1
chr4.1	CDS	69653262	69653528	69653262	ID=cds.MS.gene067614.t1;Parent=MS.gene067614.t1
chr4.1	exon	69653032	69653159	69653032	ID=MS.gene067614.t1.exon4;Parent=MS.gene067614.t1
chr4.1	CDS	69653032	69653159	69653032	ID=cds.MS.gene067614.t1;Parent=MS.gene067614.t1
chr4.1	exon	69652676	69652873	69652676	ID=MS.gene067614.t1.exon5;Parent=MS.gene067614.t1
chr4.1	CDS	69652676	69652873	69652676	ID=cds.MS.gene067614.t1;Parent=MS.gene067614.t1
chr4.1	exon	69651568	69651922	69651568	ID=MS.gene067614.t1.exon6;Parent=MS.gene067614.t1
chr4.1	CDS	69651568	69651922	69651568	ID=cds.MS.gene067614.t1;Parent=MS.gene067614.t1

Gene Sequence

>MS.gene067614

ATGGAATCCTGCAATTGTATTGAGCCACAATGGCCAGCAGATGATTTATTGATGAAATACCAATACATATCAGATTTCTTCATCGCCCTTGCTTATTTCTCGATCCCGCTCGAGCTTATCTACTTTGTTAAGAAATCTGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCCTTCATAGTTCTATGTGGAGCAACACATCTAATAAATTTATGGACCTTCACAATTCATACAAGAACCGTGGCAATTGTAATGACCACCGCCAAGGTTTTAACTGCAGTGGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCCGATCTATTAAGTGTTAAAACTAGGGAATTATTTTTGAAGAACAAGGCTGCGGAGCTTGATAGAGAAATGGGCTTGATTCGTACGCAGGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGTACTCTTGATAGACATACAATACTGAAAACGACTCTTGTTGAACTCGGTAGAACTCTTGGGTTAGAGGAATGTGCGTTATGGATGCCGACACGTACTGGGTTGGAGCTTCAACTTTCTTACACATTGAGACAGCAAAACCCTGTTGGATATACGGTACCTATTAATCTTCCTGTGATCAATCATGTATTTAGTAGCAATCGTGCAGTTAAAATTTCATCGAATTGCCCAGTTGCTCGATTACGACCTCATGCTGCAAAATACATGCCTGGGGCAGTAGTTGCTATTCGGGTTCCTCTCCTAAATCTTTCTAATTTTCAAATATATGATTGGCCTGAGGTTTCAACCAGAAGTTATGCTTTGATGGTTTTGATGCTTCCATCTGATAGTGCTAGACAGTGGCATGTACATGAGTTAGAGCTGGTCGAGGTAGTTGCTGATCAGGTTAGTAATTCGCTGTTTTATTCAGTTTCCTTTGTAGCGTATTTCTTTACATGTTGTTTGCTTCACTTTTATTTGACCGAAATTCTTTTACATGGACCTGTTTTTACACCAGGTAGCTGTTGCTCTTTCTCATGCTGCAATCTTAGAAGAGTCGATGAGGGCAAGGGATCAACTTATGGAGCAGAATGTTGCACTTGATATGGCCAGGAGAGAAGCAGAAACTGCAATTCATGCTCGCAATGACTTTTTGGCTGTTATGAATCACGAGATGAGAACTCCGATGCATGCAATTATTGCACTCTCTTCATTGATGCAGGAAACAGATCTGACTGCTGAGCAACGTCTAATGGTGGAAACAATACTGAAAAGCAGCAATTTATTAGCTACACTCGTCAACGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTTTTCAACTTGAAATATCAACATTTAACCTTCATTCATTGTTTAGAGAGGTAAAATTTTCGCCTAAAACCCAAAAAAGAAAACTATATTGGTCTGACTAGTAGCTTATGATCTTTGAGTTTTTTCAAAAGCTTGATGTTGTTATATTTGTTATTCTGATTGCAGGTCATTAACTTGATTAAACCTGTTGCATCTGTTAAAAAGCTGTCACTCACTTTACATTTTGCATCAGATTTGCCGGTGCATGCGATTGGTGATGAAAAGCGTCTCATGCAAATTCTTCTCAATGTTGTTGGCAATGCTGTTAAGTTCACAAAAGAAGGCAGCATTTCCATCGCCGTGGTTGTTGTAAAGCCTGAATCCTTCCGCGATATTAGATTTCCTGATTTCCTACCAGTACCAAGTGATGGCCACTTTTATTTGCGAGTACAGGTTTGTTTCGTCAAGCTTTACTAACTTTCTTCTGTTTTGGTATATTGTATCGTCTGTTATCTGATTTCGAAGGTGGAATATATTTTGTTTTCCACAATATAGGTAAAAGATTCAGGATCAGGAATCAATCCACAAGACATCCCAACGTTATTCACTAAGTTTGCACAAAACCAAACATTAGCAACAAAAAATCCTGTTGGAAGTGGGCTTGGCCTTGCAATTTGTAAAAGGTATTAAATTCTTGTATAGTTACTGATATGAACATGCTAATCTGTTTTCTATTCTTTCGGATATAGTATATTTACAAAATTAGAATTTGCGCTCTTCAATATTGGTATTTATGATTTTCTTCTATTGATTCCATACGGTATCTTTAACACGTGAGCAGGTTTGTGAATCTCATGGAAGGACATATTTGGATCGAAAGCGAAGGTGTTGGTAAAGGATGTACAGCCACTTTCATTGTAAAACTCGGAATCCCGGACCGTCCAAATGAACATAAACTACCTTACAAACCAAAAGCTCTAGTAAATCATGGGTCTACAAACATTTCCGGCCTCAAGGTTCTTGTCATGGATGATAATGGGTCAGTAACAGCTTTATTTCCGTACCTTCAGTTGTGAAATTTGTTACCATGTCTGGTGATTTTATAGAAAAGTAAACTTAGGTTGACTTCTTACTTTACGCCCCGACTTCTTGGGTCCTAATTATATTCTTGAAAGCATGATAATACTTTTGTGCTGAATGCTCATATTGCTTACTACTAGTCCAAAGTAAATCTATATACATCAAGGTTTAGCTGCTAAACTTTTTTAATTTACACTCCCTAAAAGCAATGTTGTAAAAACTGAATCAGAGAGACATCTTGGTCATGGTTCACTGCATTAAACCACTCAAACTGGGACAAAACCGTGTTCTAACTGTTTAAATAACTGAACGTAGAGAATGCTGTTCACAATTTAACAGGCTGAACTGTCCGGTTTGCTTTTCATAGTCCTTGATGGGACATTATGGTTTTAGTTTGATCGATGTAGTTGACCCCACTTACTATGAAAAGACTTACTGGTGGTTGTTGGTGTAACAAGCTTTAATACCATATCAAGGAATATTTCTAGTATAAATTTAAACTTTTAGGTGAAGGTACCTGAATTTTTATTTGACAATTTGTATGTTCATTGACACTCACTTTATAGCCAGAAAAGAAAATATACATAATGCATGCAGTCTTCATTCAGTCTTCTACTTGGAAGTCAGATGAATTGTTTAGTGGCTGATGCATTTGCTACGTTTACTCTTTCCCTTCCTTGTGTCATAACTGATGGTGAAACTTGTAATGCAGGGTGAGTAGGTCAGCGACAAAGGGACTTCTTATCCATTTAGGATGCGATGTCACAACTGTTAGCTCAAGCGAAGAATGCCTGTGTGTTGTTTCTCTGGAACACAAAGTGGTCTTTATGGATGTTTGTACAGGGTTAGATGGTTATGAATTAGCGGTTCGTATACAAGAGAAGTTCACAAAACGTCAAGATAGACCACTTATAGTTGCTCTTACCGGAAACACAAACAAGTTGACCAAAGAGAACTGTTTGAGAGCTGGTGTGAATGGCCTAGTTTTGAAACCTGTTTCTGTTGAGAAGATGAAAGGTGTTTTAACAGAACTCTTGGAGCGTCGGTTTGTGTTTGAAACAATTTAA

Protein sequence

>MS.gene067614.t1

MESCNCIEPQWPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINHVFSSNRAVKISSNCPVARLRPHAAKYMPGAVVAIRVPLLNLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDMARREAETAIHARNDFLAVMNHEMRTPMHAIIALSSLMQETDLTAEQRLMVETILKSSNLLATLVNDVLDLSRLEDGSFQLEISTFNLHSLFREVINLIKPVASVKKLSLTLHFASDLPVHAIGDEKRLMQILLNVVGNAVKFTKEGSISIAVVVVKPESFRDIRFPDFLPVPSDGHFYLRVQVKDSGSGINPQDIPTLFTKFAQNQTLATKNPVGSGLGLAICKRFVNLMEGHIWIESEGVGKGCTATFIVKLGIPDRPNEHKLPYKPKALVNHGSTNISGLKVLVMDDNGVSRSATKGLLIHLGCDVTTVSSSEECLCVVSLEHKVVFMDVCTGLDGYELAVRIQEKFTKRQDRPLIVALTGNTNKLTKENCLRAGVNGLVLKPVSVEKMKGVLTELLERRFVFETI