Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067636.t1 | GAU36621.1 | 59.7 | 62 | 22 | 2 | 1 | 62 | 1 | 59 | 2.90E-09 | 72 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067636.t1 | A0A2Z6MYR6 | 59.7 | 62 | 22 | 2 | 1 | 62 | 1 | 59 | 2.1e-09 | 72.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051710 | MS.gene067636 | 0.816456 | 5.48E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene067636 | 0.809741 | 1.63E-50 | -1.69E-46 |
| MS.gene054801 | MS.gene067636 | 0.800321 | 1.52E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene067636 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene067636 | 0.823155 | 1.61E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene067636 | 0.804779 | 1.83E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene067636 | 0.820758 | 5.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067636.t1 | MTR_2g011420 | 83.871 | 62 | 7 | 2 | 1 | 62 | 1 | 59 | 2.22e-29 | 107 |
| MS.gene067636.t1 | MTR_2g011420 | 83.871 | 62 | 7 | 2 | 1 | 62 | 1 | 59 | 2.47e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAATAAAGAACCGATTT+TGG | 0.165009 | 4.1:-69178713 | MS.gene067636:CDS |
| GGAGTGAGGGACGGCGGCGG+CGG | 0.256932 | 4.1:-69175031 | MS.gene067636:intron |
| ACCCACAAATGGAAATTTCT+TGG | 0.278625 | 4.1:+69178585 | None:intergenic |
| AAATTACCCCACGCAGATTC+TGG | 0.280776 | 4.1:+69178661 | None:intergenic |
| GTTGTGATTGTGGTGGTGTT+AGG | 0.316103 | 4.1:-69174867 | MS.gene067636:CDS |
| GACGGCGGCGGCGGGAGGTC+GGG | 0.337985 | 4.1:-69175022 | MS.gene067636:CDS |
| GCAGCAGCAATCTTCTATTC+AGG | 0.365842 | 4.1:-69178617 | MS.gene067636:CDS |
| GGACGGCGGCGGCGGGAGGT+CGG | 0.369298 | 4.1:-69175023 | MS.gene067636:CDS |
| ATTTCCATTTGTGGGTGATA+AGG | 0.396431 | 4.1:-69178578 | MS.gene067636:intron |
| TGAGGGACGGCGGCGGCGGG+AGG | 0.402695 | 4.1:-69175027 | MS.gene067636:intron |
| CCATTGTCTAGCCAACAAAA+TGG | 0.403643 | 4.1:-69176951 | MS.gene067636:intron |
| GAGTGAGGGACGGCGGCGGC+GGG | 0.407373 | 4.1:-69175030 | MS.gene067636:intron |
| GAGGGAGTGAGGGACGGCGG+CGG | 0.409363 | 4.1:-69175034 | MS.gene067636:intron |
| GCCAAGAAATTTCCATTTGT+GGG | 0.422209 | 4.1:-69178586 | MS.gene067636:CDS |
| GACGAAGAAGGCTTGAGAAT+GGG | 0.426597 | 4.1:-69174801 | MS.gene067636:CDS |
| GTCGGAGACGGGTGTGAGAA+TGG | 0.438012 | 4.1:-69174844 | MS.gene067636:CDS |
| ACAAATGCAATTGTTGTTAG+TGG | 0.440049 | 4.1:+69176990 | None:intergenic |
| TTGTGATTGTGGTGGTGTTA+GGG | 0.449040 | 4.1:-69174866 | MS.gene067636:CDS |
| AGCCAAGAAATTTCCATTTG+TGG | 0.451303 | 4.1:-69178587 | MS.gene067636:CDS |
| GCGGAGGGAGTGAGGGACGG+CGG | 0.460115 | 4.1:-69175037 | MS.gene067636:intron |
| TCGGAGACGGGTGTGAGAAT+GGG | 0.470147 | 4.1:-69174843 | MS.gene067636:CDS |
| GGACGAAGAAGGCTTGAGAA+TGG | 0.474897 | 4.1:-69174802 | MS.gene067636:CDS |
| ACTTCCCCATCATCCAAAAT+CGG | 0.480162 | 4.1:+69178700 | None:intergenic |
| GTGGTGTTAGGGTCGGAGAC+GGG | 0.487929 | 4.1:-69174855 | MS.gene067636:CDS |
| GGTGGTGTTAGGGTCGGAGA+CGG | 0.488468 | 4.1:-69174856 | MS.gene067636:CDS |
| AAGAGAAGAGGTTGTGATTG+TGG | 0.508513 | 4.1:-69174877 | MS.gene067636:CDS |
| CTTACCTTATCACCCACAAA+TGG | 0.525327 | 4.1:+69178574 | None:intergenic |
| CGCGAGCAAGAGGACGAAGA+AGG | 0.532184 | 4.1:-69174813 | MS.gene067636:CDS |
| AAGAAGAAGAGGAGGCGGTG+AGG | 0.536810 | 4.1:-69174924 | MS.gene067636:CDS |
| GGGTCGGAGGCGCGAGCAAG+AGG | 0.544507 | 4.1:-69174823 | MS.gene067636:CDS |
| CGGCGGTTGTGAAGAAGAAG+AGG | 0.547520 | 4.1:-69174935 | MS.gene067636:CDS |
| ACGAAGAAGGCTTGAGAATG+GGG | 0.547963 | 4.1:-69174800 | MS.gene067636:CDS |
| TGATGGGGAAGTAGAGTATG+AGG | 0.548779 | 4.1:-69178689 | MS.gene067636:CDS |
| AACAATTGCATTTGTTCCCG+TGG | 0.553050 | 4.1:-69176982 | MS.gene067636:CDS |
| GGCTGGTCCAGAATCTGCGT+GGG | 0.566158 | 4.1:-69178668 | MS.gene067636:CDS |
| GATTGTGGTGGTGTTAGGGT+CGG | 0.568938 | 4.1:-69174862 | MS.gene067636:CDS |
| TTGTGAAGAAGAAGAGGAGG+CGG | 0.587466 | 4.1:-69174929 | MS.gene067636:CDS |
| GGGGAAGTAGAGTATGAGGC+TGG | 0.604667 | 4.1:-69178685 | MS.gene067636:CDS |
| GACAATGGTTGAATTACCAC+GGG | 0.609751 | 4.1:+69176966 | None:intergenic |
| CGAAGAAGGCTTGAGAATGG+GGG | 0.635254 | 4.1:-69174799 | MS.gene067636:CDS |
| AGGCTGGTCCAGAATCTGCG+TGG | 0.639324 | 4.1:-69178669 | MS.gene067636:CDS |
| AGACAATGGTTGAATTACCA+CGG | 0.644788 | 4.1:+69176965 | None:intergenic |
| GACTATATTGACGAGGACGG+CGG | 0.646318 | 4.1:-69174952 | MS.gene067636:CDS |
| AGACGGGTGTGAGAATGGGT+CGG | 0.648077 | 4.1:-69174839 | MS.gene067636:CDS |
| CGGGTGTGAGAATGGGTCGG+AGG | 0.652614 | 4.1:-69174836 | MS.gene067636:CDS |
| AACGACTATATTGACGAGGA+CGG | 0.658761 | 4.1:-69174955 | MS.gene067636:CDS |
| CGGTTGTGAAGAAGAAGAGG+AGG | 0.673596 | 4.1:-69174932 | MS.gene067636:CDS |
| AGAAGAGGTTGTGATTGTGG+TGG | 0.693045 | 4.1:-69174874 | MS.gene067636:CDS |
| GCTGGTCCAGAATCTGCGTG+GGG | 0.726249 | 4.1:-69178667 | MS.gene067636:CDS |
| AGTCAACGACTATATTGACG+AGG | 0.752622 | 4.1:-69174959 | MS.gene067636:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAATCAAAAATATAA+AGG | + | chr4.1:69176428-69176447 | None:intergenic | 10.0% |
| !! | AAATTGTTATAGTTAATATT+AGG | - | chr4.1:69176186-69176205 | MS.gene067636:intron | 10.0% |
| !!! | AATAAATTAATCTAAAGTTA+TGG | - | chr4.1:69176061-69176080 | MS.gene067636:intron | 10.0% |
| !!! | GATTTTGAAATAAAAATTAA+TGG | + | chr4.1:69176212-69176231 | None:intergenic | 10.0% |
| !! | AAATGAAATTATTTACATCT+AGG | - | chr4.1:69177222-69177241 | MS.gene067636:intron | 15.0% |
| !! | AATTTAAATTAATTTCATCG+TGG | + | chr4.1:69176171-69176190 | None:intergenic | 15.0% |
| !! | ATATAATTTATTGGAGAAAT+TGG | + | chr4.1:69176374-69176393 | None:intergenic | 15.0% |
| !! | CTAATTTATGAAAAAAATAG+TGG | + | chr4.1:69177091-69177110 | None:intergenic | 15.0% |
| !! | TATAATTTATTGGAGAAATT+GGG | + | chr4.1:69176373-69176392 | None:intergenic | 15.0% |
| !! | TCACAACTTATATAATTTAT+TGG | + | chr4.1:69176383-69176402 | None:intergenic | 15.0% |
| !! | TCTAATTTATGAAAAAATAG+TGG | + | chr4.1:69177304-69177323 | None:intergenic | 15.0% |
| !!! | GATGTAAATAATTTCATTTT+AGG | + | chr4.1:69177221-69177240 | None:intergenic | 15.0% |
| !!! | TTATTATTCCATTAACTTTT+TGG | - | chr4.1:69175432-69175451 | MS.gene067636:intron | 15.0% |
| !! | AAAAAAACTAGCCAAATATA+TGG | - | chr4.1:69178093-69178112 | MS.gene067636:intron | 20.0% |
| !! | ATATAAACTAGCCAAATATA+TGG | - | chr4.1:69177247-69177266 | MS.gene067636:intron | 20.0% |
| !! | ATTGTAAAACAGGTTATTTA+TGG | - | chr4.1:69177145-69177164 | MS.gene067636:intron | 20.0% |
| !! | CAATCCATATTAAATACAAA+AGG | - | chr4.1:69175875-69175894 | MS.gene067636:intron | 20.0% |
| !! | CTTATATACCAAAAAGTTAA+TGG | + | chr4.1:69175443-69175462 | None:intergenic | 20.0% |
| !! | TTTACTATTCTAATACTTAC+AGG | - | chr4.1:69175920-69175939 | MS.gene067636:intron | 20.0% |
| !! | TTTGATGAAAAAACTATTTG+AGG | - | chr4.1:69175019-69175038 | MS.gene067636:CDS | 20.0% |
| !!! | ATATAACCATAATTTGTCAA+AGG | - | chr4.1:69178246-69178265 | MS.gene067636:intron | 20.0% |
| !!! | TAAATAACCTGTTTTACAAT+CGG | + | chr4.1:69177145-69177164 | None:intergenic | 20.0% |
| !!! | TCAACATATTTTTAGGAATA+CGG | - | chr4.1:69175780-69175799 | MS.gene067636:intron | 20.0% |
| !!! | TGTACCTTTTGTATTTAATA+TGG | + | chr4.1:69175882-69175901 | None:intergenic | 20.0% |
| !!! | TTCTGATGCTATTTTTTAAT+TGG | - | chr4.1:69176809-69176828 | MS.gene067636:intron | 20.0% |
| ! | AAAACCATATTATTTACTCC+TGG | - | chr4.1:69177009-69177028 | MS.gene067636:intron | 25.0% |
| ! | AAAACGAGATTATTTACATG+TGG | - | chr4.1:69177857-69177876 | MS.gene067636:intron | 25.0% |
| ! | AAAACGATATTATTTACACC+TGG | - | chr4.1:69178069-69178088 | MS.gene067636:intron | 25.0% |
| ! | AAACCATATTATTTACTCCT+GGG | - | chr4.1:69177010-69177029 | MS.gene067636:intron | 25.0% |
| ! | AAACGAGATTATTTACATGT+GGG | - | chr4.1:69177858-69177877 | MS.gene067636:intron | 25.0% |
| ! | AAACGATATTATTTACACCT+GGG | - | chr4.1:69178070-69178089 | MS.gene067636:intron | 25.0% |
| ! | AAGATAACTAGCCAAATATA+TGG | - | chr4.1:69177034-69177053 | MS.gene067636:intron | 25.0% |
| ! | AGAGATGATTTCTTTGAATT+TGG | + | chr4.1:69178372-69178391 | None:intergenic | 25.0% |
| ! | AGATAGAAAGAGTTATTGAA+AGG | - | chr4.1:69176603-69176622 | MS.gene067636:intron | 25.0% |
| ! | ATATCCAATGACACATAATA+GGG | + | chr4.1:69176096-69176115 | None:intergenic | 25.0% |
| ! | CTTCATTATCTAGTCATTTA+GGG | - | chr4.1:69174978-69174997 | MS.gene067636:CDS | 25.0% |
| ! | GAATATTGAATCAATGATGA+AGG | + | chr4.1:69176325-69176344 | None:intergenic | 25.0% |
| ! | GAGATGATTTCTTTGAATTT+GGG | + | chr4.1:69178371-69178390 | None:intergenic | 25.0% |
| ! | GATAGAAAGAGTTATTGAAA+GGG | - | chr4.1:69176604-69176623 | MS.gene067636:intron | 25.0% |
| ! | GGTGTTTCCTTTAATATTAT+AGG | + | chr4.1:69176850-69176869 | None:intergenic | 25.0% |
| ! | GGTTATATTGTTCGTTTATT+TGG | + | chr4.1:69178234-69178253 | None:intergenic | 25.0% |
| ! | TAAAACAGGTTATTTATGGT+TGG | - | chr4.1:69177149-69177168 | MS.gene067636:intron | 25.0% |
| ! | TATATCCAATGACACATAAT+AGG | + | chr4.1:69176097-69176116 | None:intergenic | 25.0% |
| ! | TATCGCACCTATAATATTAA+AGG | - | chr4.1:69176840-69176859 | MS.gene067636:intron | 25.0% |
| ! | TATTGAATCCTAAAGATTGA+TGG | - | chr4.1:69175391-69175410 | MS.gene067636:intron | 25.0% |
| ! | TGTTAGTAACTAACAACATA+TGG | + | chr4.1:69176871-69176890 | None:intergenic | 25.0% |
| !! | ATTGCATGTTTTGTATTTGA+AGG | - | chr4.1:69175251-69175270 | MS.gene067636:intron | 25.0% |
| !! | CAGGTAATCAACATATTTTT+AGG | - | chr4.1:69175773-69175792 | MS.gene067636:intron | 25.0% |
| !! | CATGTAAATAATCTCGTTTT+AGG | + | chr4.1:69177857-69177876 | None:intergenic | 25.0% |
| !! | GGAGTAAATAATATGGTTTT+AGG | + | chr4.1:69177009-69177028 | None:intergenic | 25.0% |
| !! | GGTGTAAATAATATCGTTTT+AGG | + | chr4.1:69178069-69178088 | None:intergenic | 25.0% |
| !! | TAGCATTTAAGATTTAGCAT+TGG | + | chr4.1:69176128-69176147 | None:intergenic | 25.0% |
| !! | TTTGAAGGTATACTTATAAG+TGG | - | chr4.1:69175266-69175285 | MS.gene067636:intron | 25.0% |
| !!! | AGCTTATTTTTACTAGCTTA+TGG | + | chr4.1:69175120-69175139 | None:intergenic | 25.0% |
| !!! | GATGCTATTTTTTAATTGGT+AGG | - | chr4.1:69176813-69176832 | MS.gene067636:intron | 25.0% |
| !!! | TTATTTTTACTAGCTTATGG+TGG | + | chr4.1:69175117-69175136 | None:intergenic | 25.0% |
| AAACACAACCATCAATCTTT+AGG | + | chr4.1:69175402-69175421 | None:intergenic | 30.0% | |
| AATGAAGGAAACATTTGCAA+AGG | + | chr4.1:69174965-69174984 | None:intergenic | 30.0% | |
| ACCAAAACCATCAAAAAGTA+AGG | + | chr4.1:69175950-69175969 | None:intergenic | 30.0% | |
| AGATATTGTATGTATGCACA+AGG | - | chr4.1:69175461-69175480 | MS.gene067636:intron | 30.0% | |
| ATGAAGGAAACATTTGCAAA+GGG | + | chr4.1:69174964-69174983 | None:intergenic | 30.0% | |
| ATGATTGTGTCTTTATTGAC+AGG | - | chr4.1:69176957-69176976 | MS.gene067636:CDS | 30.0% | |
| ATGGTTATCTCTTTGAACTA+GGG | - | chr4.1:69175496-69175515 | MS.gene067636:intron | 30.0% | |
| CAAAACATGCAATTAAGAGA+AGG | + | chr4.1:69175244-69175263 | None:intergenic | 30.0% | |
| CCAAAACCATCAAAAAGTAA+GGG | + | chr4.1:69175949-69175968 | None:intergenic | 30.0% | |
| CCTAAATGACTAGATAATGA+AGG | + | chr4.1:69174980-69174999 | None:intergenic | 30.0% | |
| CCTTCATTATCTAGTCATTT+AGG | - | chr4.1:69174977-69174996 | MS.gene067636:CDS | 30.0% | |
| CTGTTCAGATCTAAAAACTA+CGG | + | chr4.1:69178508-69178527 | None:intergenic | 30.0% | |
| CTTAATATTCTTAGGTAAGC+AGG | + | chr4.1:69175853-69175872 | None:intergenic | 30.0% | |
| GAATGCAATTTCATATTCTC+AGG | - | chr4.1:69175754-69175773 | MS.gene067636:intron | 30.0% | |
| GATAATAGGGGTAAAATTGA+GGG | - | chr4.1:69175047-69175066 | MS.gene067636:intron | 30.0% | |
| GATATTGTATGTATGCACAA+GGG | - | chr4.1:69175462-69175481 | MS.gene067636:intron | 30.0% | |
| GGATTGCACTTAATATTCTT+AGG | + | chr4.1:69175861-69175880 | None:intergenic | 30.0% | |
| GTCACGTATATGTAAAAATG+TGG | + | chr4.1:69178128-69178147 | None:intergenic | 30.0% | |
| GTCACGTATTTGTAAAAATG+TGG | + | chr4.1:69177282-69177301 | None:intergenic | 30.0% | |
| TATCCAATGACACATAATAG+GGG | + | chr4.1:69176095-69176114 | None:intergenic | 30.0% | |
| TATGGTTATCTCTTTGAACT+AGG | - | chr4.1:69175495-69175514 | MS.gene067636:intron | 30.0% | |
| TATTTAATGTGTGTGTGATC+CGG | + | chr4.1:69175373-69175392 | None:intergenic | 30.0% | |
| TGAATGTCTGTTAGATTTGA+AGG | - | chr4.1:69178427-69178446 | MS.gene067636:intron | 30.0% | |
| TGATAATAGGGGTAAAATTG+AGG | - | chr4.1:69175046-69175065 | MS.gene067636:intron | 30.0% | |
| TTATAGGTCGAAAACTGAAT+GGG | - | chr4.1:69175998-69176017 | MS.gene067636:intron | 30.0% | |
| TTTATAGGTCGAAAACTGAA+TGG | - | chr4.1:69175997-69176016 | MS.gene067636:intron | 30.0% | |
| TTTCCCAGGAGTAAATAATA+TGG | + | chr4.1:69177016-69177035 | None:intergenic | 30.0% | |
| ! | AAACTTGTCGATTGTAAAAC+AGG | - | chr4.1:69177983-69178002 | MS.gene067636:intron | 30.0% |
| ! | ACAAATGCAATTGTTGTTAG+TGG | + | chr4.1:69176508-69176527 | None:intergenic | 30.0% |
| ! | ACATACACATACCATTTTGT+TGG | + | chr4.1:69176558-69176577 | None:intergenic | 30.0% |
| ! | ATTTGAGGCAAGTGATAATA+GGG | - | chr4.1:69175034-69175053 | MS.gene067636:intron | 30.0% |
| ! | CTCTTTGAATTTTGAATGCA+GGG | + | chr4.1:69178286-69178305 | None:intergenic | 30.0% |
| ! | GGTATACTTATAAGTGGATT+TGG | - | chr4.1:69175272-69175291 | MS.gene067636:intron | 30.0% |
| ! | TATTTGAGGCAAGTGATAAT+AGG | - | chr4.1:69175033-69175052 | MS.gene067636:intron | 30.0% |
| ! | TTTTGAATGCAGGGAAAAAA+TGG | + | chr4.1:69178277-69178296 | None:intergenic | 30.0% |
| !! | GGATTTGGTGAAAATAGAAT+AGG | - | chr4.1:69175287-69175306 | MS.gene067636:intron | 30.0% |
| !!! | AAACGTTGGTGATGTTTTAT+AGG | - | chr4.1:69175982-69176001 | MS.gene067636:intron | 30.0% |
| !!! | ATACCTGTGTTGCTTATTTT+GGG | - | chr4.1:69175568-69175587 | MS.gene067636:intron | 30.0% |
| !!! | TATACCTGTGTTGCTTATTT+TGG | - | chr4.1:69175567-69175586 | MS.gene067636:intron | 30.0% |
| AAACTCGACGATTGTAAAAC+AGG | - | chr4.1:69177347-69177366 | MS.gene067636:intron | 35.0% | |
| AACTCTTTCTATCTCATCCA+TGG | + | chr4.1:69176597-69176616 | None:intergenic | 35.0% | |
| AAGAAACCGTGTAAAAAGTG+GGG | - | chr4.1:69176697-69176716 | MS.gene067636:intron | 35.0% | |
| ACCCACAAATGGAAATTTCT+TGG | + | chr4.1:69174913-69174932 | None:intergenic | 35.0% | |
| AGAAAGAGTTATTGAAAGGG+AGG | - | chr4.1:69176607-69176626 | MS.gene067636:intron | 35.0% | |
| AGACAATGGTTGAATTACCA+CGG | + | chr4.1:69176533-69176552 | None:intergenic | 35.0% | |
| AGCCAAGAAATTTCCATTTG+TGG | - | chr4.1:69174908-69174927 | MS.gene067636:CDS | 35.0% | |
| ATCAAGCGTATTAAAGGCAA+TGG | + | chr4.1:69175211-69175230 | None:intergenic | 35.0% | |
| ATTAGAACTTGTCCGTCTTT+AGG | - | chr4.1:69177106-69177125 | MS.gene067636:intron | 35.0% | |
| ATTTCCATTTGTGGGTGATA+AGG | - | chr4.1:69174917-69174936 | MS.gene067636:CDS | 35.0% | |
| CAAAGGGTTCATACGATTTA+GGG | + | chr4.1:69174948-69174967 | None:intergenic | 35.0% | |
| CAAGAAACCGTGTAAAAAGT+GGG | - | chr4.1:69176696-69176715 | MS.gene067636:intron | 35.0% | |
| CAATTAAGAGAAGGTTGCAT+GGG | + | chr4.1:69175235-69175254 | None:intergenic | 35.0% | |
| CCTGCATTCAAAATTCAAAG+AGG | - | chr4.1:69178284-69178303 | MS.gene067636:intron | 35.0% | |
| GCCAAGAAATTTCCATTTGT+GGG | - | chr4.1:69174909-69174928 | MS.gene067636:CDS | 35.0% | |
| GGTCATACAGACCATATATT+TGG | + | chr4.1:69177048-69177067 | None:intergenic | 35.0% | |
| GTTACGCCTTTGACAAATTA+TGG | + | chr4.1:69178255-69178274 | None:intergenic | 35.0% | |
| GTTGAAAAGGGGTAATAACA+TGG | + | chr4.1:69175351-69175370 | None:intergenic | 35.0% | |
| TAGAATGTCTCAGTGACAAT+TGG | - | chr4.1:69178166-69178185 | MS.gene067636:intron | 35.0% | |
| TATCCCAAAATAAGCAACAC+AGG | + | chr4.1:69175574-69175593 | None:intergenic | 35.0% | |
| TATCTCTTTGAACTAGGGTA+TGG | - | chr4.1:69175501-69175520 | MS.gene067636:intron | 35.0% | |
| TGAATTTGGGTAGATTTGAG+AGG | + | chr4.1:69178358-69178377 | None:intergenic | 35.0% | |
| TGACACACTTAATCTCCATT+GGG | + | chr4.1:69175633-69175652 | None:intergenic | 35.0% | |
| TGGAGAAATTGGGTTTGATT+GGG | + | chr4.1:69176363-69176382 | None:intergenic | 35.0% | |
| TTAACGACTTAGGGTCTATT+TGG | + | chr4.1:69175187-69175206 | None:intergenic | 35.0% | |
| TTGACACACTTAATCTCCAT+TGG | + | chr4.1:69175634-69175653 | None:intergenic | 35.0% | |
| TTGGAGAAATTGGGTTTGAT+TGG | + | chr4.1:69176364-69176383 | None:intergenic | 35.0% | |
| ! | AAACTCACCGATTGTAAAAC+AGG | - | chr4.1:69177135-69177154 | MS.gene067636:intron | 35.0% |
| ! | CACATAATTGGGGACAATTT+TGG | - | chr4.1:69176030-69176049 | MS.gene067636:intron | 35.0% |
| ! | CCTCTTTGAATTTTGAATGC+AGG | + | chr4.1:69178287-69178306 | None:intergenic | 35.0% |
| ! | GACTTTGGTTCATCTATCTA+TGG | + | chr4.1:69176294-69176313 | None:intergenic | 35.0% |
| ! | TGTTATTACCCCTTTTCAAC+CGG | - | chr4.1:69175351-69175370 | MS.gene067636:intron | 35.0% |
| ! | TTTGAGGCAAGTGATAATAG+GGG | - | chr4.1:69175035-69175054 | MS.gene067636:intron | 35.0% |
| !! | AAAGAACCGATTTTGGATGA+TGG | - | chr4.1:69174789-69174808 | MS.gene067636:CDS | 35.0% |
| !! | AAGAACCGATTTTGGATGAT+GGG | - | chr4.1:69174790-69174809 | MS.gene067636:CDS | 35.0% |
| !! | GCAGAATAAAGAACCGATTT+TGG | - | chr4.1:69174782-69174801 | MS.gene067636:CDS | 35.0% |
| !!! | AGGAAACCCTTACTTTTTGA+TGG | - | chr4.1:69175940-69175959 | MS.gene067636:intron | 35.0% |
| !!! | ATTTGGCTAGTTTTTTTCCC+AGG | + | chr4.1:69178090-69178109 | None:intergenic | 35.0% |
| !!! | CAAATCGTTTTGAAGAGAAG+AGG | - | chr4.1:69178606-69178625 | MS.gene067636:CDS | 35.0% |
| !!! | CCATCAGGTTTTGAGTAATT+GGG | + | chr4.1:69175669-69175688 | None:intergenic | 35.0% |
| !!! | CCCTTACTTTTTGATGGTTT+TGG | - | chr4.1:69175946-69175965 | MS.gene067636:intron | 35.0% |
| !!! | TGCTTAGTGTATTGGTTTTG+AGG | + | chr4.1:69175527-69175546 | None:intergenic | 35.0% |
| AAAATTCAAAGAGGACGCGA+CGG | - | chr4.1:69178293-69178312 | MS.gene067636:intron | 40.0% | |
| AACAATTGCATTTGTTCCCG+TGG | - | chr4.1:69176513-69176532 | MS.gene067636:intron | 40.0% | |
| AACGACTATATTGACGAGGA+CGG | - | chr4.1:69178540-69178559 | MS.gene067636:intron | 40.0% | |
| AAGAGAAGAGGTTGTGATTG+TGG | - | chr4.1:69178618-69178637 | MS.gene067636:CDS | 40.0% | |
| AAGAGTTATTGAAAGGGAGG+TGG | - | chr4.1:69176610-69176629 | MS.gene067636:intron | 40.0% | |
| AAGCACAACTCTGTTCAACA+AGG | - | chr4.1:69175542-69175561 | MS.gene067636:intron | 40.0% | |
| AAGTTTATCACGCCTAAGGA+CGG | + | chr4.1:69177969-69177988 | None:intergenic | 40.0% | |
| AATCAGAGATTCCATGTGAG+TGG | - | chr4.1:69176228-69176247 | MS.gene067636:intron | 40.0% | |
| ACTCAAAACCTGATGGCAAT+TGG | - | chr4.1:69175673-69175692 | MS.gene067636:intron | 40.0% | |
| ACTTCCCCATCATCCAAAAT+CGG | + | chr4.1:69174798-69174817 | None:intergenic | 40.0% | |
| AGCACAACTCTGTTCAACAA+GGG | - | chr4.1:69175543-69175562 | MS.gene067636:intron | 40.0% | |
| AGGCAATGGTTTAACGACTT+AGG | + | chr4.1:69175197-69175216 | None:intergenic | 40.0% | |
| AGTCAACGACTATATTGACG+AGG | - | chr4.1:69178536-69178555 | MS.gene067636:intron | 40.0% | |
| ATCAGAGATTCCATGTGAGT+GGG | - | chr4.1:69176229-69176248 | MS.gene067636:intron | 40.0% | |
| ATGAAGGAGAGATGTGACTT+TGG | + | chr4.1:69176309-69176328 | None:intergenic | 40.0% | |
| ATGGGCATCAAGCGTATTAA+AGG | + | chr4.1:69175217-69175236 | None:intergenic | 40.0% | |
| ATTAGAACTTGTCCGTCCTT+AGG | - | chr4.1:69177954-69177973 | MS.gene067636:intron | 40.0% | |
| ATTTGGGTAGATTTGAGAGG+AGG | + | chr4.1:69178355-69178374 | None:intergenic | 40.0% | |
| CAGAGTTGTGCTTAGTGTAT+TGG | + | chr4.1:69175535-69175554 | None:intergenic | 40.0% | |
| CATTTGTGGGTGATAAGGTA+AGG | - | chr4.1:69174922-69174941 | MS.gene067636:CDS | 40.0% | |
| CCAAGAAACCGTGTAAAAAG+TGG | - | chr4.1:69176695-69176714 | MS.gene067636:intron | 40.0% | |
| CCATTGTCTAGCCAACAAAA+TGG | - | chr4.1:69176544-69176563 | MS.gene067636:intron | 40.0% | |
| CCCAATTACTCAAAACCTGA+TGG | - | chr4.1:69175666-69175685 | MS.gene067636:intron | 40.0% | |
| CTTACCTTATCACCCACAAA+TGG | + | chr4.1:69174924-69174943 | None:intergenic | 40.0% | |
| GACAATGGTTGAATTACCAC+GGG | + | chr4.1:69176532-69176551 | None:intergenic | 40.0% | |
| GACACACTTAATCTCCATTG+GGG | + | chr4.1:69175632-69175651 | None:intergenic | 40.0% | |
| GACACATAATAGGGGACAAT+TGG | + | chr4.1:69176087-69176106 | None:intergenic | 40.0% | |
| GAGTTTATCACGCCTAAAGA+CGG | + | chr4.1:69177121-69177140 | None:intergenic | 40.0% | |
| GATTGGGCAGAAACATGTAT+AGG | + | chr4.1:69176347-69176366 | None:intergenic | 40.0% | |
| GCAAAGGGTTCATACGATTT+AGG | + | chr4.1:69174949-69174968 | None:intergenic | 40.0% | |
| GCAATTAAGAGAAGGTTGCA+TGG | + | chr4.1:69175236-69175255 | None:intergenic | 40.0% | |
| GCAGGATATTCTTAAGAACG+CGG | + | chr4.1:69175835-69175854 | None:intergenic | 40.0% | |
| GGAATACGGCTACATTTGTT+TGG | - | chr4.1:69175794-69175813 | MS.gene067636:intron | 40.0% | |
| GGCAATGGTTTAACGACTTA+GGG | + | chr4.1:69175196-69175215 | None:intergenic | 40.0% | |
| GGGAATAACAGTGTTCAAAG+TGG | - | chr4.1:69176255-69176274 | MS.gene067636:intron | 40.0% | |
| GGTCATGCAGACCATATATT+TGG | + | chr4.1:69178107-69178126 | None:intergenic | 40.0% | |
| GTCACGCATGTGTAAAAATG+TGG | + | chr4.1:69177069-69177088 | None:intergenic | 40.0% | |
| GTGTACAATGTTGCAAACGT+TGG | - | chr4.1:69175968-69175987 | MS.gene067636:intron | 40.0% | |
| GTTAGATTTGAAGGAGATGC+CGG | - | chr4.1:69178436-69178455 | MS.gene067636:intron | 40.0% | |
| TCTATCTATGGTTCAGCAGT+TGG | + | chr4.1:69176282-69176301 | None:intergenic | 40.0% | |
| TGTCCCCTATTATGTGTCAT+TGG | - | chr4.1:69176089-69176108 | MS.gene067636:intron | 40.0% | |
| ! | TTGTGATTGTGGTGGTGTTA+GGG | - | chr4.1:69178629-69178648 | MS.gene067636:CDS | 40.0% |
| ! | TTTGGCTAGTTATCTTTCCC+AGG | + | chr4.1:69177030-69177049 | None:intergenic | 40.0% |
| !! | AGAACCGATTTTGGATGATG+GGG | - | chr4.1:69174791-69174810 | MS.gene067636:CDS | 40.0% |
| !! | CACAAGGGTGTTTGTTGTTA+TGG | - | chr4.1:69175477-69175496 | MS.gene067636:intron | 40.0% |
| !! | CCATTTTGTTGGCTAGACAA+TGG | + | chr4.1:69176547-69176566 | None:intergenic | 40.0% |
| !! | GCTCTAGAGACACATAATTG+GGG | - | chr4.1:69176020-69176039 | MS.gene067636:intron | 40.0% |
| !! | GGCTCTAGAGACACATAATT+GGG | - | chr4.1:69176019-69176038 | MS.gene067636:intron | 40.0% |
| !!! | CCACTTTTTACACGGTTTCT+TGG | + | chr4.1:69176698-69176717 | None:intergenic | 40.0% |
| !!! | GCCATCAGGTTTTGAGTAAT+TGG | + | chr4.1:69175670-69175689 | None:intergenic | 40.0% |
| !!! | TCAGGTTTTGAGTAATTGGG+AGG | + | chr4.1:69175666-69175685 | None:intergenic | 40.0% |
| AAACCTGATGGCAATTGGTG+TGG | - | chr4.1:69175678-69175697 | MS.gene067636:intron | 45.0% | |
| AAATTACCCCACGCAGATTC+TGG | + | chr4.1:69174837-69174856 | None:intergenic | 45.0% | |
| ACGAAGAAGGCTTGAGAATG+GGG | - | chr4.1:69178695-69178714 | MS.gene067636:CDS | 45.0% | |
| AGAAGAGGTTGTGATTGTGG+TGG | - | chr4.1:69178621-69178640 | MS.gene067636:CDS | 45.0% | |
| CGACAAGTTTATCACGCCTA+AGG | + | chr4.1:69177973-69177992 | None:intergenic | 45.0% | |
| CGACGTCGATGAGAGATTAA+CGG | + | chr4.1:69178400-69178419 | None:intergenic | 45.0% | |
| CGTTAATCTCTCATCGACGT+CGG | - | chr4.1:69178398-69178417 | MS.gene067636:intron | 45.0% | |
| GACGAAGAAGGCTTGAGAAT+GGG | - | chr4.1:69178694-69178713 | MS.gene067636:CDS | 45.0% | |
| GCAGCAGCAATCTTCTATTC+AGG | - | chr4.1:69174878-69174897 | MS.gene067636:CDS | 45.0% | |
| GTAGATTTGAGAGGAGGATG+AGG | + | chr4.1:69178349-69178368 | None:intergenic | 45.0% | |
| GTGTGTGATCCGGTTGAAAA+GGG | + | chr4.1:69175363-69175382 | None:intergenic | 45.0% | |
| TAAGTGTCAACGATCCCCAA+TGG | - | chr4.1:69175615-69175634 | MS.gene067636:intron | 45.0% | |
| TGATGGGGAAGTAGAGTATG+AGG | - | chr4.1:69174806-69174825 | MS.gene067636:CDS | 45.0% | |
| TGTGTGATCCGGTTGAAAAG+GGG | + | chr4.1:69175362-69175381 | None:intergenic | 45.0% | |
| TGTGTGTGATCCGGTTGAAA+AGG | + | chr4.1:69175364-69175383 | None:intergenic | 45.0% | |
| TTGTGAAGAAGAAGAGGAGG+CGG | - | chr4.1:69178566-69178585 | MS.gene067636:intron | 45.0% | |
| ! | ATCTGCGTGGGGTAATTTTG+AGG | - | chr4.1:69174839-69174858 | MS.gene067636:CDS | 45.0% |
| ! | GTTGTGATTGTGGTGGTGTT+AGG | - | chr4.1:69178628-69178647 | MS.gene067636:CDS | 45.0% |
| !! | GGGCTCTAGAGACACATAAT+TGG | - | chr4.1:69176018-69176037 | MS.gene067636:intron | 45.0% |
| !! | TGGGGACAATTTTGGCATAC+TGG | - | chr4.1:69176038-69176057 | MS.gene067636:intron | 45.0% |
| !!! | GCAGAACCCCACTTTTTACA+CGG | + | chr4.1:69176706-69176725 | None:intergenic | 45.0% |
| !!! | AATATATTTTGTATTTAATA+TGG | - | chr4.1:69175732-69175751 | MS.gene067636:intron | 5.0% |
| AGATTCCATGTGAGTGGGTG+AGG | - | chr4.1:69176234-69176253 | MS.gene067636:intron | 50.0% | |
| AGATTTGAAGGAGATGCCGG+CGG | - | chr4.1:69178439-69178458 | MS.gene067636:intron | 50.0% | |
| AGGAGGATGAGGAAGAGGAA+CGG | + | chr4.1:69178338-69178357 | None:intergenic | 50.0% | |
| ATGGCAATTGGTGTGGTGCT+AGG | - | chr4.1:69175685-69175704 | MS.gene067636:intron | 50.0% | |
| CGAAGAAGGCTTGAGAATGG+GGG | - | chr4.1:69178696-69178715 | MS.gene067636:CDS | 50.0% | |
| CGGTTGTGAAGAAGAAGAGG+AGG | - | chr4.1:69178563-69178582 | MS.gene067636:intron | 50.0% | |
| CGTCGATGAGAGATTAACGG+TGG | + | chr4.1:69178397-69178416 | None:intergenic | 50.0% | |
| GACTATATTGACGAGGACGG+CGG | - | chr4.1:69178543-69178562 | MS.gene067636:intron | 50.0% | |
| GATTCCATGTGAGTGGGTGA+GGG | - | chr4.1:69176235-69176254 | MS.gene067636:intron | 50.0% | |
| GGACGAAGAAGGCTTGAGAA+TGG | - | chr4.1:69178693-69178712 | MS.gene067636:CDS | 50.0% | |
| GGTATGTGTATGTGACGACG+AGG | - | chr4.1:69176565-69176584 | MS.gene067636:intron | 50.0% | |
| TATTCCCTCACCCACTCACA+TGG | + | chr4.1:69176242-69176261 | None:intergenic | 50.0% | |
| TTGAGAGGAGGATGAGGAAG+AGG | + | chr4.1:69178343-69178362 | None:intergenic | 50.0% | |
| ! | GATTGTGGTGGTGTTAGGGT+CGG | - | chr4.1:69178633-69178652 | MS.gene067636:CDS | 50.0% |
| AAGAAGAAGAGGAGGCGGTG+AGG | - | chr4.1:69178571-69178590 | MS.gene067636:intron | 55.0% | |
| AGAAGGCTTGAGAATGGGGG+TGG | - | chr4.1:69178699-69178718 | MS.gene067636:CDS | 55.0% | |
| AGACGGGTGTGAGAATGGGT+CGG | - | chr4.1:69178656-69178675 | MS.gene067636:CDS | 55.0% | |
| ATTCAAAGAGGACGCGACGG+AGG | - | chr4.1:69178296-69178315 | MS.gene067636:intron | 55.0% | |
| CGGCGGTTGTGAAGAAGAAG+AGG | - | chr4.1:69178560-69178579 | MS.gene067636:intron | 55.0% | |
| CTTTCCCCATGGGTGAAGGA+TGG | - | chr4.1:69176725-69176744 | MS.gene067636:intron | 55.0% | |
| GCACCACACCAATTGCCATC+AGG | + | chr4.1:69175684-69175703 | None:intergenic | 55.0% | |
| GGGGAAGTAGAGTATGAGGC+TGG | - | chr4.1:69174810-69174829 | MS.gene067636:CDS | 55.0% | |
| TCGGAGACGGGTGTGAGAAT+GGG | - | chr4.1:69178652-69178671 | MS.gene067636:CDS | 55.0% | |
| TCTGCTTTCCCCATGGGTGA+AGG | - | chr4.1:69176721-69176740 | MS.gene067636:intron | 55.0% | |
| TGACGACGAGGATGTCTCCA+TGG | - | chr4.1:69176577-69176596 | MS.gene067636:intron | 55.0% | |
| TGCGTCCATCCTTCACCCAT+GGG | + | chr4.1:69176733-69176752 | None:intergenic | 55.0% | |
| TGGGGTTCTGCTTTCCCCAT+GGG | - | chr4.1:69176715-69176734 | MS.gene067636:intron | 55.0% | |
| TTGCGTCCATCCTTCACCCA+TGG | + | chr4.1:69176734-69176753 | None:intergenic | 55.0% | |
| AAAGAGGACGCGACGGAGGT+GGG | - | chr4.1:69178300-69178319 | MS.gene067636:intron | 60.0% | |
| AGGCTTGAGAATGGGGGTGG+CGG | - | chr4.1:69178702-69178721 | MS.gene067636:CDS | 60.0% | |
| CGCGAGCAAGAGGACGAAGA+AGG | - | chr4.1:69178682-69178701 | MS.gene067636:CDS | 60.0% | |
| GCGTCCATCCTTCACCCATG+GGG | + | chr4.1:69176732-69176751 | None:intergenic | 60.0% | |
| GCTGGTCCAGAATCTGCGTG+GGG | - | chr4.1:69174828-69174847 | MS.gene067636:CDS | 60.0% | |
| GTCGGAGACGGGTGTGAGAA+TGG | - | chr4.1:69178651-69178670 | MS.gene067636:CDS | 60.0% | |
| GTGGGGTTCTGCTTTCCCCA+TGG | - | chr4.1:69176714-69176733 | MS.gene067636:intron | 60.0% | |
| TTGAAGGAGATGCCGGCGGA+GGG | - | chr4.1:69178443-69178462 | MS.gene067636:intron | 60.0% | |
| TTTGAAGGAGATGCCGGCGG+AGG | - | chr4.1:69178442-69178461 | MS.gene067636:intron | 60.0% | |
| ! | AGGCTGGTCCAGAATCTGCG+TGG | - | chr4.1:69174826-69174845 | MS.gene067636:CDS | 60.0% |
| ! | GGCTGGTCCAGAATCTGCGT+GGG | - | chr4.1:69174827-69174846 | MS.gene067636:CDS | 60.0% |
| ! | GGTGGTGTTAGGGTCGGAGA+CGG | - | chr4.1:69178639-69178658 | MS.gene067636:CDS | 60.0% |
| ! | GTGGTGTTAGGGTCGGAGAC+GGG | - | chr4.1:69178640-69178659 | MS.gene067636:CDS | 60.0% |
| AAGAGGACGCGACGGAGGTG+GGG | - | chr4.1:69178301-69178320 | MS.gene067636:intron | 65.0% | |
| CAAAGAGGACGCGACGGAGG+TGG | - | chr4.1:69178299-69178318 | MS.gene067636:intron | 65.0% | |
| CGGGTGTGAGAATGGGTCGG+AGG | - | chr4.1:69178659-69178678 | MS.gene067636:CDS | 65.0% | |
| AGAGGACGCGACGGAGGTGG+GGG | - | chr4.1:69178302-69178321 | MS.gene067636:intron | 70.0% | |
| AGATGCCGGCGGAGGGAGTG+AGG | - | chr4.1:69178450-69178469 | MS.gene067636:intron | 70.0% | |
| GATGCCGGCGGAGGGAGTGA+GGG | - | chr4.1:69178451-69178470 | MS.gene067636:intron | 70.0% | |
| CCGGCGGAGGGAGTGAGGGA+CGG | - | chr4.1:69178455-69178474 | MS.gene067636:intron | 75.0% | |
| CCGTCCCTCACTCCCTCCGC+CGG | + | chr4.1:69178458-69178477 | None:intergenic | 75.0% | |
| GAGGGAGTGAGGGACGGCGG+CGG | - | chr4.1:69178461-69178480 | MS.gene067636:intron | 75.0% | |
| GCGGAGGGAGTGAGGGACGG+CGG | - | chr4.1:69178458-69178477 | MS.gene067636:intron | 75.0% | |
| ! | GAGAATGGGGGTGGCGGCGC+TGG | - | chr4.1:69178708-69178727 | MS.gene067636:CDS | 75.0% |
| ! | GGGTCGGAGGCGCGAGCAAG+AGG | - | chr4.1:69178672-69178691 | MS.gene067636:CDS | 75.0% |
| ! | GAGTGAGGGACGGCGGCGGC+GGG | - | chr4.1:69178465-69178484 | MS.gene067636:intron | 80.0% |
| ! | GGAGTGAGGGACGGCGGCGG+CGG | - | chr4.1:69178464-69178483 | MS.gene067636:intron | 80.0% |
| ! | GACGGCGGCGGCGGGAGGTC+GGG | - | chr4.1:69178473-69178492 | MS.gene067636:intron | 85.0% |
| ! | GGACGGCGGCGGCGGGAGGT+CGG | - | chr4.1:69178472-69178491 | MS.gene067636:intron | 85.0% |
| ! | TGAGGGACGGCGGCGGCGGG+AGG | - | chr4.1:69178468-69178487 | MS.gene067636:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 69174780 | 69178737 | 69174780 | ID=MS.gene067636 |
| chr4.1 | mRNA | 69174780 | 69178737 | 69174780 | ID=MS.gene067636.t1;Parent=MS.gene067636 |
| chr4.1 | exon | 69178579 | 69178737 | 69178579 | ID=MS.gene067636.t1.exon1;Parent=MS.gene067636.t1 |
| chr4.1 | CDS | 69178579 | 69178737 | 69178579 | ID=cds.MS.gene067636.t1;Parent=MS.gene067636.t1 |
| chr4.1 | exon | 69176952 | 69177021 | 69176952 | ID=MS.gene067636.t1.exon2;Parent=MS.gene067636.t1 |
| chr4.1 | CDS | 69176952 | 69177021 | 69176952 | ID=cds.MS.gene067636.t1;Parent=MS.gene067636.t1 |
| chr4.1 | exon | 69174780 | 69175045 | 69174780 | ID=MS.gene067636.t1.exon3;Parent=MS.gene067636.t1 |
| chr4.1 | CDS | 69174780 | 69175045 | 69174780 | ID=cds.MS.gene067636.t1;Parent=MS.gene067636.t1 |
| Gene Sequence |
| Protein sequence |
