Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06769.t1 | XP_013461517.1 | 97.6 | 591 | 14 | 0 | 1 | 591 | 1 | 591 | 0.00E+00 | 1146.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06769.t1 | Q501D5 | 58.0 | 598 | 236 | 9 | 1 | 592 | 1 | 589 | 5.3e-187 | 655.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06769.t1 | A0A072V141 | 97.6 | 591 | 14 | 0 | 1 | 591 | 1 | 591 | 0.0e+00 | 1146.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene06769 | 0.913252 | 7.63E-84 | -1.69E-46 |
| MS.gene04985 | MS.gene06769 | 0.824019 | 1.01E-53 | -1.69E-46 |
| MS.gene049989 | MS.gene06769 | 0.83862 | 2.58E-57 | -1.69E-46 |
| MS.gene050297 | MS.gene06769 | 0.830166 | 3.42E-55 | -1.69E-46 |
| MS.gene050648 | MS.gene06769 | 0.825355 | 4.91E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene06769 | 0.815068 | 1.12E-51 | -1.69E-46 |
| MS.gene06057 | MS.gene06769 | 0.838674 | 2.50E-57 | -1.69E-46 |
| MS.gene061260 | MS.gene06769 | 0.800153 | 1.65E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06769 | MS.gene57751 | PPI |
| MS.gene041425 | MS.gene06769 | PPI |
| MS.gene58234 | MS.gene06769 | PPI |
| MS.gene06769 | MS.gene58754 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06769.t1 | MTR_3g094070 | 97.631 | 591 | 14 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06769.t1 | AT2G40550 | 58.027 | 598 | 236 | 9 | 1 | 592 | 1 | 589 | 0.0 | 688 |
Find 155 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTGCTGATACGCCTATT+TGG | 0.255149 | 3.3:-78272280 | MS.gene06769:CDS |
| TCGGTTTCGTGGAATGATTC+AGG | 0.295728 | 3.3:-78272496 | MS.gene06769:CDS |
| AGACATCTCTCAGCTGTTCT+AGG | 0.298551 | 3.3:-78270311 | MS.gene06769:CDS |
| CCTTTGACGAAGTCAGGTTT+TGG | 0.304581 | 3.3:+78270353 | None:intergenic |
| CTCTGCTGATACGCCTATTT+GGG | 0.305209 | 3.3:-78272279 | MS.gene06769:CDS |
| TTCCCCTGCCTCTCAGTCTC+AGG | 0.325781 | 3.3:-78271103 | MS.gene06769:CDS |
| CGCCTCATGTGTTTAAGCTT+TGG | 0.337640 | 3.3:-78268636 | MS.gene06769:CDS |
| CTTCTTTAAACAACCGCGAC+TGG | 0.341769 | 3.3:-78272731 | MS.gene06769:CDS |
| CTGATGCCTTTGACGAAGTC+AGG | 0.342007 | 3.3:+78270347 | None:intergenic |
| AGTGATTTATCAAATGGATT+TGG | 0.344039 | 3.3:-78270771 | MS.gene06769:CDS |
| TACATCTGATCCAGAGCTTC+AGG | 0.346600 | 3.3:-78270808 | MS.gene06769:CDS |
| AAAAGAATTATGATACAAAT+AGG | 0.355812 | 3.3:-78269885 | MS.gene06769:intron |
| TCACCAACCTGCTTAAATCT+TGG | 0.359173 | 3.3:+78268756 | None:intergenic |
| GTTGTTTATGCATAGGTTCC+GGG | 0.372858 | 3.3:-78272047 | MS.gene06769:intron |
| GAGATTGCTTTACTGTGTTC+CGG | 0.373047 | 3.3:-78272252 | MS.gene06769:intron |
| CGAAACCGAACAAGAGTATT+GGG | 0.374415 | 3.3:+78272510 | None:intergenic |
| GTGGAGGACCAATAAATTTA+CGG | 0.375012 | 3.3:-78272333 | MS.gene06769:CDS |
| TTGGCAAATGACCAAGGAAT+TGG | 0.375411 | 3.3:-78268589 | MS.gene06769:CDS |
| GAAGATAGTGATTTATCAAA+TGG | 0.389010 | 3.3:-78270777 | MS.gene06769:CDS |
| AATACTCTTGTTCGGTTTCG+TGG | 0.391919 | 3.3:-78272507 | MS.gene06769:CDS |
| AGCAGTTGGCAATCCATCTA+TGG | 0.394157 | 3.3:-78271994 | MS.gene06769:CDS |
| AAGCAGAAGCTTTGGAAGCT+TGG | 0.402078 | 3.3:-78269302 | MS.gene06769:CDS |
| AGCTGTGGAAGCAGAAGCTT+TGG | 0.407257 | 3.3:-78269310 | MS.gene06769:CDS |
| AGCAATCTCCGTTCCCAAAT+AGG | 0.409820 | 3.3:+78272266 | None:intergenic |
| GCCTTCTGCAACCATTTGCT+TGG | 0.413431 | 3.3:-78269334 | MS.gene06769:CDS |
| TGAGTGGGTACCTCTATCAT+AGG | 0.419368 | 3.3:+78270489 | None:intergenic |
| TCACAGGAAACTTTCAGTTC+AGG | 0.423033 | 3.3:-78270529 | MS.gene06769:CDS |
| CACCAACCTGCTTAAATCTT+GGG | 0.428915 | 3.3:+78268757 | None:intergenic |
| TTCTTTAAACAACCGCGACT+GGG | 0.430362 | 3.3:-78272730 | MS.gene06769:CDS |
| TTTGCCAATGTTCTAGTGAC+AGG | 0.430670 | 3.3:+78268604 | None:intergenic |
| CTGACTTCGTCAAAGGCATC+AGG | 0.431219 | 3.3:-78270346 | MS.gene06769:CDS |
| TAAAGAAGTCGGATCGGAAC+CGG | 0.442546 | 3.3:+78272746 | None:intergenic |
| TTGCCAACTGCTTCTGCTGA+AGG | 0.443463 | 3.3:+78272005 | None:intergenic |
| TGAAACCCAATACTCTTGTT+CGG | 0.443856 | 3.3:-78272515 | MS.gene06769:CDS |
| TTCCACAGCTTCCAAGCAAA+TGG | 0.452550 | 3.3:+78269323 | None:intergenic |
| AGCAAAGAAACCGCGTCTAT+CGG | 0.458757 | 3.3:-78270003 | MS.gene06769:CDS |
| CAATGCTCCAGATTAGAAAC+TGG | 0.460957 | 3.3:-78269780 | MS.gene06769:intron |
| CAAGTACTACAAGATGGAAA+TGG | 0.463233 | 3.3:-78269433 | MS.gene06769:CDS |
| CGGATCGGAACCGGTGGCTA+TGG | 0.466791 | 3.3:+78272755 | None:intergenic |
| ATGAATCATACCTTGTCAGC+TGG | 0.467749 | 3.3:+78270726 | None:intergenic |
| TGTTCAAGTATTCCACTGTA+AGG | 0.468020 | 3.3:+78269926 | None:intergenic |
| TCGTTGTCCTCCTGAAGCTC+TGG | 0.471222 | 3.3:+78270798 | None:intergenic |
| TTCAGCTTCAGTTCAGACTC+TGG | 0.472343 | 3.3:+78270858 | None:intergenic |
| CTCATCTAGTTGTATTGTAA+AGG | 0.476614 | 3.3:-78271022 | MS.gene06769:intron |
| CTGATGTAATTGTACCTATC+CGG | 0.478429 | 3.3:-78269356 | MS.gene06769:CDS |
| GATGTGATTGGTCGGAGAGA+AGG | 0.479336 | 3.3:+78272685 | None:intergenic |
| GCGGAGTCTCTCCAATTCCT+TGG | 0.483490 | 3.3:+78268578 | None:intergenic |
| GCTCCCTGAGACTGAGAGGC+AGG | 0.483876 | 3.3:+78271099 | None:intergenic |
| TGAATACCCAAGATTTAAGC+AGG | 0.484782 | 3.3:-78268763 | MS.gene06769:intron |
| GGGTTTCACGTATCTGATAG+TGG | 0.486104 | 3.3:+78272530 | None:intergenic |
| TCTAGTATGAGTTTATTGTC+TGG | 0.486602 | 3.3:-78271057 | MS.gene06769:CDS |
| GGCTATGGCGGCGTCGAAGG+TGG | 0.487183 | 3.3:+78272770 | None:intergenic |
| ATACTAGAGCCAGCGATCTC+AGG | 0.490063 | 3.3:+78271072 | None:intergenic |
| ACGAAACCGAACAAGAGTAT+TGG | 0.490164 | 3.3:+78272509 | None:intergenic |
| CGACCAATCACATCTCTCTC+AGG | 0.491453 | 3.3:-78272676 | MS.gene06769:intron |
| AAATGTAATGGAGTTGCAAA+AGG | 0.494363 | 3.3:-78269655 | MS.gene06769:intron |
| TCAGATGTCCAATCCATAGA+TGG | 0.495292 | 3.3:+78271981 | None:intergenic |
| CTGAACAGATTGGTAACAAT+GGG | 0.496519 | 3.3:-78268660 | MS.gene06769:intron |
| AGCAAATGGTTGCAGAAGGC+CGG | 0.497324 | 3.3:+78269337 | None:intergenic |
| CAGAAGCTTTGGAAGCTTGG+AGG | 0.501052 | 3.3:-78269299 | MS.gene06769:CDS |
| GGTGGCTATGGCGGCGTCGA+AGG | 0.503625 | 3.3:+78272767 | None:intergenic |
| TTCTCCTAATACTAAAAGAA+TGG | 0.508460 | 3.3:-78271694 | MS.gene06769:intron |
| TCCCCTGCCTCTCAGTCTCA+GGG | 0.509872 | 3.3:-78271102 | MS.gene06769:CDS |
| TTGGCAATCCATCTATGGAT+TGG | 0.510275 | 3.3:-78271989 | MS.gene06769:CDS |
| ATAGGTACAATTACATCAGC+TGG | 0.512462 | 3.3:+78269360 | None:intergenic |
| TCAGAATAAGCCTATGATAG+AGG | 0.514223 | 3.3:-78270499 | MS.gene06769:intron |
| TTCACGTATCTGATAGTGGC+TGG | 0.515371 | 3.3:+78272534 | None:intergenic |
| CAAAGAGAAAAGAGGAGGAG+AGG | 0.518617 | 3.3:-78271957 | MS.gene06769:CDS |
| TGAATCATACCTTGTCAGCT+GGG | 0.518687 | 3.3:+78270727 | None:intergenic |
| TCCTGTGAATAAAACAATGA+AGG | 0.523148 | 3.3:+78270544 | None:intergenic |
| GAAGCTCTGGATCAGATGTA+AGG | 0.525588 | 3.3:+78270811 | None:intergenic |
| GTTCAAGTATTCCACTGTAA+GGG | 0.527633 | 3.3:+78269927 | None:intergenic |
| AGGGTAGATGCTCTTGCTGT+GGG | 0.529218 | 3.3:-78270054 | MS.gene06769:CDS |
| GTATCAGCAGAGCAACCGAC+AGG | 0.531241 | 3.3:+78272290 | None:intergenic |
| TTGCCGCAATACAAGCAGAT+AGG | 0.532247 | 3.3:-78268790 | MS.gene06769:CDS |
| ATGTATATGGAAGGATGGTT+CGG | 0.533754 | 3.3:-78272357 | MS.gene06769:intron |
| AACCATTTGCTTGGAAGCTG+TGG | 0.536958 | 3.3:-78269325 | MS.gene06769:CDS |
| GATGAGACACAATTAAAAGC+TGG | 0.537791 | 3.3:-78269720 | MS.gene06769:CDS |
| AGGTTCCGGGACTGAATTCG+TGG | 0.538507 | 3.3:-78272034 | MS.gene06769:CDS |
| AACTCACGATTCACGATGGT+GGG | 0.539632 | 3.3:-78272837 | None:intergenic |
| TCCCTGAGACTGAGAGGCAG+GGG | 0.541900 | 3.3:+78271101 | None:intergenic |
| CCACCCTGTCACTAGAACAT+TGG | 0.543609 | 3.3:-78268608 | MS.gene06769:CDS |
| TTTATTTATTCACAGGTTGA+GGG | 0.544096 | 3.3:-78271732 | MS.gene06769:intron |
| AGCTGGAACTCTCAATTCTG+TGG | 0.552721 | 3.3:-78269703 | MS.gene06769:CDS |
| ATCGGAACCGGTGGCTATGG+CGG | 0.555152 | 3.3:+78272758 | None:intergenic |
| CTCCCTGAGACTGAGAGGCA+GGG | 0.556116 | 3.3:+78271100 | None:intergenic |
| ATGGTTGCAGAAGGCCGGAT+AGG | 0.556436 | 3.3:+78269342 | None:intergenic |
| CCAAAACCTGACTTCGTCAA+AGG | 0.559381 | 3.3:-78270353 | MS.gene06769:CDS |
| AAGCTTTGGAAGCTTGGAGG+TGG | 0.559758 | 3.3:-78269296 | MS.gene06769:CDS |
| CTATCATAGGCTTATTCTGA+AGG | 0.563882 | 3.3:+78270502 | None:intergenic |
| TTACCTGAGAGAGATGTGAT+TGG | 0.564128 | 3.3:+78272673 | None:intergenic |
| GGAAGGATGGTTCGGTGTGG+AGG | 0.566388 | 3.3:-78272349 | MS.gene06769:intron |
| TCTCAACATTCCATCCCTGT+CGG | 0.566421 | 3.3:-78272305 | MS.gene06769:CDS |
| TCTGCCCACGAATTCAGTCC+CGG | 0.568498 | 3.3:+78272029 | None:intergenic |
| CAGGGTAGATGCTCTTGCTG+TGG | 0.570066 | 3.3:-78270055 | MS.gene06769:CDS |
| GCTGGAACTCTCAATTCTGT+GGG | 0.571225 | 3.3:-78269702 | MS.gene06769:CDS |
| TGGCGAGGAGATCGTACTGT+GGG | 0.571872 | 3.3:+78272814 | None:intergenic |
| GCACAAGGTTCTTGACAGCA+TGG | 0.575018 | 3.3:+78269968 | None:intergenic |
| TCTGAACAGATTGGTAACAA+TGG | 0.575926 | 3.3:-78268661 | MS.gene06769:intron |
| CCGCACCGAGTGGGTTGGCG+AGG | 0.576164 | 3.3:+78272799 | None:intergenic |
| GAACCTTCAGCAGAAGCAGT+TGG | 0.578192 | 3.3:-78272008 | MS.gene06769:CDS |
| TGGAGAGACTCCGCAGAGAG+AGG | 0.581928 | 3.3:-78268569 | MS.gene06769:CDS |
| TACAGCTCCCTGAGACTGAG+AGG | 0.582470 | 3.3:+78271095 | None:intergenic |
| TTCACAGGTTGAGGGTGATG+AGG | 0.583221 | 3.3:-78271724 | MS.gene06769:intron |
| GATCTCCTCGCCAACCCACT+CGG | 0.583364 | 3.3:-78272804 | MS.gene06769:CDS |
| TCGCGGTTGTTTAAAGAAGT+CGG | 0.585029 | 3.3:+78272735 | None:intergenic |
| AAGAACAGCATACCTTGGAT+AGG | 0.585323 | 3.3:+78270249 | None:intergenic |
| GTCAGCTGGGAAATGATGCA+AGG | 0.588207 | 3.3:+78270740 | None:intergenic |
| TGATTTCAAGTACTACAAGA+TGG | 0.589781 | 3.3:-78269439 | MS.gene06769:CDS |
| TTCAAGTATTCCACTGTAAG+GGG | 0.590418 | 3.3:+78269928 | None:intergenic |
| TTCGACGCCGCCATAGCCAC+CGG | 0.590506 | 3.3:-78272765 | MS.gene06769:CDS |
| AGCAGAGCAACCGACAGGGA+TGG | 0.590945 | 3.3:+78272295 | None:intergenic |
| GGAATGATTCAGGATATGCT+TGG | 0.591067 | 3.3:-78272486 | MS.gene06769:CDS |
| CTGATACGCCTATTTGGGAA+CGG | 0.595457 | 3.3:-78272274 | MS.gene06769:CDS |
| ACTCCTATCTGCTTGTATTG+CGG | 0.595846 | 3.3:+78268787 | None:intergenic |
| CCTCAGACAAAACTAACAGT+TGG | 0.597317 | 3.3:+78269400 | None:intergenic |
| CTGAGAGAGATGTGATTGGT+CGG | 0.599783 | 3.3:+78272677 | None:intergenic |
| GATCGATGACGCCCCAGTCG+CGG | 0.601677 | 3.3:+78272718 | None:intergenic |
| TCCAAGCAAATGGTTGCAGA+AGG | 0.602079 | 3.3:+78269333 | None:intergenic |
| TCTGACCGCACCGAGTGGGT+TGG | 0.603273 | 3.3:+78272794 | None:intergenic |
| TCTTTAAACAACCGCGACTG+GGG | 0.604525 | 3.3:-78272729 | MS.gene06769:CDS |
| GTTACTGCATCTCCTATCCA+AGG | 0.604827 | 3.3:-78270261 | MS.gene06769:intron |
| GCATCATTTCCCAGCTGACA+AGG | 0.607337 | 3.3:-78270736 | MS.gene06769:intron |
| AGGGGTATGCAATGTGTGAA+AGG | 0.607645 | 3.3:+78269946 | None:intergenic |
| TTGCCAATGTTCTAGTGACA+GGG | 0.613980 | 3.3:+78268605 | None:intergenic |
| TCAGCTGGGAAATGATGCAA+GGG | 0.615707 | 3.3:+78270741 | None:intergenic |
| GGAGCTGTACCTGAGATCGC+TGG | 0.616055 | 3.3:-78271081 | MS.gene06769:CDS |
| CACAGCAAGAGCATCTACCC+TGG | 0.619097 | 3.3:+78270056 | None:intergenic |
| CTGAGCAAAGAGAAAAGAGG+AGG | 0.626217 | 3.3:-78271962 | MS.gene06769:CDS |
| TTCACTTTAACCTCTCTCTG+CGG | 0.632262 | 3.3:+78268559 | None:intergenic |
| TGACTTCGTCAAAGGCATCA+GGG | 0.632763 | 3.3:-78270345 | MS.gene06769:CDS |
| TGGATCTGACCGCACCGAGT+GGG | 0.633931 | 3.3:+78272790 | None:intergenic |
| GGGTAGATGCTCTTGCTGTG+GGG | 0.634455 | 3.3:-78270053 | MS.gene06769:CDS |
| GGTGTCTTGCAACTAGCTGA+AGG | 0.634721 | 3.3:-78269759 | MS.gene06769:CDS |
| TGCAATGTGTGAAAGGCACA+AGG | 0.637195 | 3.3:+78269953 | None:intergenic |
| ATTGGTCGGAGAGAAGGTTG+CGG | 0.638343 | 3.3:+78272691 | None:intergenic |
| TTGGCGAGGAGATCGTACTG+TGG | 0.638733 | 3.3:+78272813 | None:intergenic |
| AGAAGTCGGATCGGAACCGG+TGG | 0.643344 | 3.3:+78272749 | None:intergenic |
| CCTCGCCAACCCACTCGGTG+CGG | 0.644714 | 3.3:-78272799 | MS.gene06769:CDS |
| TGAATAAAACAATGAAGGCG+TGG | 0.644813 | 3.3:+78270549 | None:intergenic |
| CTGTGGGTGTAGAGAATGCA+AGG | 0.645939 | 3.3:-78269686 | MS.gene06769:CDS |
| GTTTCTGATTCAAAAGAGTG+TGG | 0.646460 | 3.3:+78269249 | None:intergenic |
| CATCTGAGCAAAGAGAAAAG+AGG | 0.648196 | 3.3:-78271965 | MS.gene06769:CDS |
| CACCAAAGCTTAAACACATG+AGG | 0.649903 | 3.3:+78268634 | None:intergenic |
| CCAATGTTCTAGTGACAGGG+TGG | 0.654124 | 3.3:+78268608 | None:intergenic |
| GTTGTTTAAAGAAGTCGGAT+CGG | 0.657757 | 3.3:+78272740 | None:intergenic |
| AGAACATTGGCAAATGACCA+AGG | 0.660030 | 3.3:-78268595 | MS.gene06769:CDS |
| ATCTGATCCAGAGCTTCAGG+AGG | 0.667439 | 3.3:-78270805 | MS.gene06769:CDS |
| GTTGAGGGTGATGAGGTCGA+AGG | 0.670154 | 3.3:-78271717 | MS.gene06769:CDS |
| TATGGAAGGATGGTTCGGTG+TGG | 0.673117 | 3.3:-78272352 | MS.gene06769:intron |
| ATAGTGGCTGGTGTGAGAAG+CGG | 0.674090 | 3.3:+78272546 | None:intergenic |
| GTGGATCTGACCGCACCGAG+TGG | 0.677758 | 3.3:+78272789 | None:intergenic |
| GGTTCCGGGACTGAATTCGT+GGG | 0.683130 | 3.3:-78272033 | MS.gene06769:CDS |
| ACATTGCATACCCCTTACAG+TGG | 0.700005 | 3.3:-78269938 | MS.gene06769:CDS |
| TATCAGCAGAGCAACCGACA+GGG | 0.700346 | 3.3:+78272291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAATTATGATACAAAT+AGG | - | chr3.3:78271497-78271516 | MS.gene06769:intron | 15.0% |
| !! | AATGATTTCATAAATAAAAC+TGG | + | chr3.3:78269945-78269964 | None:intergenic | 15.0% |
| !! | AGATACTAATATATTATTCT+AGG | + | chr3.3:78269775-78269794 | None:intergenic | 15.0% |
| !! | TAGAGTTTAACTAATAATTA+GGG | + | chr3.3:78268786-78268805 | None:intergenic | 15.0% |
| !! | TTAGAGTTTAACTAATAATT+AGG | + | chr3.3:78268787-78268806 | None:intergenic | 15.0% |
| !!! | ATGTTTCTTTCATATATTTT+AGG | - | chr3.3:78269199-78269218 | MS.gene06769:intron | 15.0% |
| !!! | TGTTTCTTTCATATATTTTA+GGG | - | chr3.3:78269200-78269219 | MS.gene06769:intron | 15.0% |
| !!! | TTAACTTGTTTTTAATTTCA+TGG | - | chr3.3:78270441-78270460 | MS.gene06769:intron | 15.0% |
| !!! | TTCAAAAATAGAGTTAATTT+TGG | - | chr3.3:78268994-78269013 | MS.gene06769:intron | 15.0% |
| !!! | TTTAGATTTGTTAGAAATTA+TGG | - | chr3.3:78269799-78269818 | MS.gene06769:intron | 15.0% |
| !!! | TTTAGTATTCTATTTAGTTT+AGG | - | chr3.3:78269974-78269993 | MS.gene06769:CDS | 15.0% |
| !!! | TTTGTATCATAATTCTTTTT+TGG | + | chr3.3:78271496-78271515 | None:intergenic | 15.0% |
| !! | AATCAAATTCATAACACAAT+TGG | + | chr3.3:78269736-78269755 | None:intergenic | 20.0% |
| !! | AATGACATTTATTTATTCAC+AGG | - | chr3.3:78269643-78269662 | MS.gene06769:intron | 20.0% |
| !! | AGAAAAATCCGTAAATTTAT+TGG | + | chr3.3:78269060-78269079 | None:intergenic | 20.0% |
| !! | ATAAAACTGGTAAACTAAAT+AGG | + | chr3.3:78269932-78269951 | None:intergenic | 20.0% |
| !! | ATGTACTTTCATTACTAAAT+TGG | - | chr3.3:78269239-78269258 | MS.gene06769:intron | 20.0% |
| !! | ATTATGGATAACAAATATCT+TGG | + | chr3.3:78269876-78269895 | None:intergenic | 20.0% |
| !! | GATGTATTCATTAAGAAAAA+TGG | + | chr3.3:78272487-78272506 | None:intergenic | 20.0% |
| !! | GTGTTTACAAATAATAATGA+TGG | + | chr3.3:78272465-78272484 | None:intergenic | 20.0% |
| !! | TAAAACTGGTAAACTAAATA+GGG | + | chr3.3:78269931-78269950 | None:intergenic | 20.0% |
| !! | TGTAAACAATCAATAGAAAA+TGG | + | chr3.3:78271872-78271891 | None:intergenic | 20.0% |
| !!! | TATTCTGTTCTTTTAAGAAT+TGG | - | chr3.3:78270221-78270240 | MS.gene06769:intron | 20.0% |
| ! | AACCTAATGAAGCATAATTA+GGG | + | chr3.3:78268816-78268835 | None:intergenic | 25.0% |
| ! | AACTGACTAATTTCAAAGTT+GGG | - | chr3.3:78272273-78272292 | MS.gene06769:CDS | 25.0% |
| ! | AGTATTTCCAATATATTCCT+GGG | - | chr3.3:78272379-78272398 | MS.gene06769:intron | 25.0% |
| ! | ATGAATAAATCCATTTGAGT+GGG | + | chr3.3:78270911-78270930 | None:intergenic | 25.0% |
| ! | ATTACAAACATTCTCAAGAA+TGG | + | chr3.3:78271275-78271294 | None:intergenic | 25.0% |
| ! | ATTACTAAATTGGAAAGAGA+TGG | - | chr3.3:78269249-78269268 | MS.gene06769:CDS | 25.0% |
| ! | ATTGAATAATAGTGTTTCCA+AGG | - | chr3.3:78269305-78269324 | MS.gene06769:CDS | 25.0% |
| ! | ATTTAGTCTCATCATTGTTT+AGG | - | chr3.3:78270387-78270406 | MS.gene06769:intron | 25.0% |
| ! | ATTTATTTATTCACAGGTTG+AGG | - | chr3.3:78269649-78269668 | MS.gene06769:intron | 25.0% |
| ! | CAAAGTTAATGACAAACATT+TGG | - | chr3.3:78271900-78271919 | MS.gene06769:intron | 25.0% |
| ! | CATGTTAAAACTTATAAACC+AGG | + | chr3.3:78270780-78270799 | None:intergenic | 25.0% |
| ! | GAAGATAGTGATTTATCAAA+TGG | - | chr3.3:78270605-78270624 | MS.gene06769:intron | 25.0% |
| ! | GTAACCTAAAAATCTTTAAC+TGG | + | chr3.3:78272224-78272243 | None:intergenic | 25.0% |
| ! | GTCTATGGACATAAAAATTA+TGG | + | chr3.3:78269892-78269911 | None:intergenic | 25.0% |
| ! | TACTAAAAGAATGGTATGAA+TGG | - | chr3.3:78269697-78269716 | MS.gene06769:CDS | 25.0% |
| ! | TAGTATTTCCAATATATTCC+TGG | - | chr3.3:78272378-78272397 | MS.gene06769:intron | 25.0% |
| ! | TCATAAACTAAGGTTGTTTA+AGG | - | chr3.3:78272188-78272207 | MS.gene06769:intron | 25.0% |
| ! | TCTTAAAAGAACAGAATAGA+AGG | + | chr3.3:78270219-78270238 | None:intergenic | 25.0% |
| ! | TCTTGAGAATGTTTGTAATA+AGG | - | chr3.3:78271276-78271295 | MS.gene06769:intron | 25.0% |
| ! | TTCTCCTAATACTAAAAGAA+TGG | - | chr3.3:78269688-78269707 | MS.gene06769:CDS | 25.0% |
| ! | TTTAACAGTTGTTTATGCAT+AGG | - | chr3.3:78269328-78269347 | MS.gene06769:CDS | 25.0% |
| ! | TTTGGTTATGTCAATGTATA+TGG | - | chr3.3:78269012-78269031 | MS.gene06769:intron | 25.0% |
| !! | AATCTTACTTTCTTTTCACT+TGG | - | chr3.3:78271814-78271833 | MS.gene06769:intron | 25.0% |
| !! | AGTGATTTATCAAATGGATT+TGG | - | chr3.3:78270611-78270630 | MS.gene06769:intron | 25.0% |
| !! | CATACCATTCTTTTAGTATT+AGG | + | chr3.3:78269695-78269714 | None:intergenic | 25.0% |
| !! | CTTGGAAATGAATTTTATGT+TGG | - | chr3.3:78268914-78268933 | MS.gene06769:intron | 25.0% |
| !! | GTAACAGTTTTCATAAACTA+AGG | - | chr3.3:78272178-78272197 | MS.gene06769:intron | 25.0% |
| !! | TGAACCAGTTAAAGATTTTT+AGG | - | chr3.3:78272217-78272236 | MS.gene06769:intron | 25.0% |
| !! | TTTATTTATTCACAGGTTGA+GGG | - | chr3.3:78269650-78269669 | MS.gene06769:intron | 25.0% |
| !!! | AATGACATTTTTGAGTTTGT+GGG | - | chr3.3:78270545-78270564 | MS.gene06769:CDS | 25.0% |
| AAACATTTGGTATGTGTTTC+AGG | - | chr3.3:78271913-78271932 | MS.gene06769:intron | 30.0% | |
| AACCCTAATTATGCTTCATT+AGG | - | chr3.3:78268811-78268830 | MS.gene06769:CDS | 30.0% | |
| AAGGTTGCTGAAAAATGTAA+TGG | - | chr3.3:78271715-78271734 | MS.gene06769:CDS | 30.0% | |
| AATGCATAAATCACATGTGT+AGG | + | chr3.3:78271236-78271255 | None:intergenic | 30.0% | |
| AATTATTCACATTTCTCTCG+AGG | + | chr3.3:78269527-78269546 | None:intergenic | 30.0% | |
| ACAAGGAATGAACTCAATTA+AGG | + | chr3.3:78269495-78269514 | None:intergenic | 30.0% | |
| AGTTAAATGTGCGTAATAGT+TGG | - | chr3.3:78270125-78270144 | MS.gene06769:intron | 30.0% | |
| ATAAACTGGAAAAATACCAC+TGG | + | chr3.3:78270104-78270123 | None:intergenic | 30.0% | |
| ATTCATAACACAATTGGAGT+TGG | + | chr3.3:78269730-78269749 | None:intergenic | 30.0% | |
| CAAGGAATGAACTCAATTAA+GGG | + | chr3.3:78269494-78269513 | None:intergenic | 30.0% | |
| CAATGCTTGAAAAGATAGAA+AGG | + | chr3.3:78271170-78271189 | None:intergenic | 30.0% | |
| CATAAACAACTGTTAAACCT+TGG | + | chr3.3:78269325-78269344 | None:intergenic | 30.0% | |
| CTCATCTAGTTGTATTGTAA+AGG | - | chr3.3:78270360-78270379 | MS.gene06769:intron | 30.0% | |
| GAAAGAGATGGATAATTTAG+TGG | - | chr3.3:78269261-78269280 | MS.gene06769:CDS | 30.0% | |
| GAACCTAATGAAGCATAATT+AGG | + | chr3.3:78268817-78268836 | None:intergenic | 30.0% | |
| GAACTGACTAATTTCAAAGT+TGG | - | chr3.3:78272272-78272291 | MS.gene06769:CDS | 30.0% | |
| GATGAATAAATCCATTTGAG+TGG | + | chr3.3:78270912-78270931 | None:intergenic | 30.0% | |
| GATTTATTCATCTGAGCAAA+TGG | - | chr3.3:78270920-78270939 | MS.gene06769:intron | 30.0% | |
| GGATAACAAATATCTTGGTT+TGG | + | chr3.3:78269871-78269890 | None:intergenic | 30.0% | |
| GTGTTATGAATTTGATTGAC+TGG | - | chr3.3:78269739-78269758 | MS.gene06769:CDS | 30.0% | |
| GTTATGTCAATGTATATGGA+AGG | - | chr3.3:78269016-78269035 | MS.gene06769:intron | 30.0% | |
| TCCTGTGAATAAAACAATGA+AGG | + | chr3.3:78270841-78270860 | None:intergenic | 30.0% | |
| TCTAGTATGAGTTTATTGTC+TGG | - | chr3.3:78270325-78270344 | MS.gene06769:CDS | 30.0% | |
| TGAAATCCAACAAAATGACT+TGG | + | chr3.3:78269560-78269579 | None:intergenic | 30.0% | |
| TTCATAACACAATTGGAGTT+GGG | + | chr3.3:78269729-78269748 | None:intergenic | 30.0% | |
| ! | AAATGTAATGGAGTTGCAAA+AGG | - | chr3.3:78271727-78271746 | MS.gene06769:intron | 30.0% |
| ! | AACTACTTGAGTTTGATGAT+TGG | - | chr3.3:78270188-78270207 | MS.gene06769:intron | 30.0% |
| ! | ATTTTATGTTGGCGCTTTTA+AGG | - | chr3.3:78268925-78268944 | MS.gene06769:intron | 30.0% |
| ! | CGCACATTTAACTTATAAAC+TGG | + | chr3.3:78270118-78270137 | None:intergenic | 30.0% |
| ! | TCAAGCATTGTAAATGATCT+CGG | - | chr3.3:78271180-78271199 | MS.gene06769:intron | 30.0% |
| ! | TCTATTTAGTTTAGGAGTTC+TGG | - | chr3.3:78269982-78270001 | MS.gene06769:CDS | 30.0% |
| ! | TGATTTCAAGTACTACAAGA+TGG | - | chr3.3:78271943-78271962 | MS.gene06769:CDS | 30.0% |
| !! | AACAAATATCTTGGTTTGGA+TGG | + | chr3.3:78269867-78269886 | None:intergenic | 30.0% |
| !! | GTTTTAAGCTATGCATGTAT+AGG | + | chr3.3:78272343-78272362 | None:intergenic | 30.0% |
| !! | TCAAGCATACTTAGTCTTTT+TGG | - | chr3.3:78272507-78272526 | MS.gene06769:CDS | 30.0% |
| !!! | GAATGACATTTTTGAGTTTG+TGG | - | chr3.3:78270544-78270563 | MS.gene06769:CDS | 30.0% |
| AACTAGAGAAATCAGCAAAG+AGG | + | chr3.3:78272442-78272461 | None:intergenic | 35.0% | |
| AAGCACATGCTATCTTATCA+AGG | + | chr3.3:78270999-78271018 | None:intergenic | 35.0% | |
| AATGAACTCAATTAAGGGCA+AGG | + | chr3.3:78269489-78269508 | None:intergenic | 35.0% | |
| ACAAACATTCTCAAGAATGG+AGG | + | chr3.3:78271272-78271291 | None:intergenic | 35.0% | |
| ACACAACCATCCAAAAAGAA+AGG | + | chr3.3:78271776-78271795 | None:intergenic | 35.0% | |
| ACAGAGGAAAATGAGGAAAT+GGG | + | chr3.3:78270482-78270501 | None:intergenic | 35.0% | |
| AGCAATTAGCGTCTTGAATT+GGG | - | chr3.3:78270952-78270971 | MS.gene06769:intron | 35.0% | |
| AGTTGTTTATGCATAGGTTC+CGG | - | chr3.3:78269334-78269353 | MS.gene06769:CDS | 35.0% | |
| ATAAGCTCCCAGGAATATAT+TGG | + | chr3.3:78272389-78272408 | None:intergenic | 35.0% | |
| ATAGGTACAATTACATCAGC+TGG | + | chr3.3:78272025-78272044 | None:intergenic | 35.0% | |
| ATGTATATGGAAGGATGGTT+CGG | - | chr3.3:78269025-78269044 | MS.gene06769:intron | 35.0% | |
| CAAACATTCTCAAGAATGGA+GGG | + | chr3.3:78271271-78271290 | None:intergenic | 35.0% | |
| CAAGTACTACAAGATGGAAA+TGG | - | chr3.3:78271949-78271968 | MS.gene06769:CDS | 35.0% | |
| CATTGATCAAGTATCCTCAA+GGG | + | chr3.3:78270682-78270701 | None:intergenic | 35.0% | |
| CTATCATAGGCTTATTCTGA+AGG | + | chr3.3:78270883-78270902 | None:intergenic | 35.0% | |
| CTATTAAGAACAGCATACCT+TGG | + | chr3.3:78271141-78271160 | None:intergenic | 35.0% | |
| CTGATGTAATTGTACCTATC+CGG | - | chr3.3:78272026-78272045 | MS.gene06769:CDS | 35.0% | |
| GAGTTTGTATGCTAAGAGTA+AGG | + | chr3.3:78272250-78272269 | None:intergenic | 35.0% | |
| GATGAGACACAATTAAAAGC+TGG | - | chr3.3:78271662-78271681 | MS.gene06769:intron | 35.0% | |
| GTGGAGGACCAATAAATTTA+CGG | - | chr3.3:78269049-78269068 | MS.gene06769:intron | 35.0% | |
| GTTCAAGTATTCCACTGTAA+GGG | + | chr3.3:78271458-78271477 | None:intergenic | 35.0% | |
| GTTGTTTAAAGAAGTCGGAT+CGG | + | chr3.3:78268645-78268664 | None:intergenic | 35.0% | |
| GTTTCTGATTCAAAAGAGTG+TGG | + | chr3.3:78272136-78272155 | None:intergenic | 35.0% | |
| TACAGAGGAAAATGAGGAAA+TGG | + | chr3.3:78270483-78270502 | None:intergenic | 35.0% | |
| TACTCTTAGCATACAAACTC+AGG | - | chr3.3:78272250-78272269 | MS.gene06769:intron | 35.0% | |
| TAGCAATTAGCGTCTTGAAT+TGG | - | chr3.3:78270951-78270970 | MS.gene06769:intron | 35.0% | |
| TCAGAATAAGCCTATGATAG+AGG | - | chr3.3:78270883-78270902 | MS.gene06769:intron | 35.0% | |
| TCATTGATCAAGTATCCTCA+AGG | + | chr3.3:78270683-78270702 | None:intergenic | 35.0% | |
| TGAAACCCAATACTCTTGTT+CGG | - | chr3.3:78268867-78268886 | MS.gene06769:intron | 35.0% | |
| TGAATAAAACAATGAAGGCG+TGG | + | chr3.3:78270836-78270855 | None:intergenic | 35.0% | |
| TGAATACCCAAGATTTAAGC+AGG | - | chr3.3:78272619-78272638 | MS.gene06769:intron | 35.0% | |
| TGTCAATGTATATGGAAGGA+TGG | - | chr3.3:78269020-78269039 | MS.gene06769:intron | 35.0% | |
| TGTTCAAGTATTCCACTGTA+AGG | + | chr3.3:78271459-78271478 | None:intergenic | 35.0% | |
| TTATTACTACCTCCATGTGT+TGG | - | chr3.3:78270156-78270175 | MS.gene06769:intron | 35.0% | |
| TTCAAGTATTCCACTGTAAG+GGG | + | chr3.3:78271457-78271476 | None:intergenic | 35.0% | |
| ! | CATTTTACCCTCTAAATTGC+AGG | - | chr3.3:78270808-78270827 | MS.gene06769:CDS | 35.0% |
| ! | CTGAACAGATTGGTAACAAT+GGG | - | chr3.3:78272722-78272741 | MS.gene06769:CDS | 35.0% |
| ! | GTACTGAATAACTGACTCAT+AGG | - | chr3.3:78270077-78270096 | MS.gene06769:intron | 35.0% |
| ! | TATGCATGTATAGGTTGAAG+TGG | + | chr3.3:78272334-78272353 | None:intergenic | 35.0% |
| ! | TATGGCTGATATTTTGCTCA+AGG | - | chr3.3:78269817-78269836 | MS.gene06769:intron | 35.0% |
| ! | TCTGAACAGATTGGTAACAA+TGG | - | chr3.3:78272721-78272740 | MS.gene06769:CDS | 35.0% |
| ! | TGAAGTCTTGAACAGCTTTT+AGG | - | chr3.3:78270013-78270032 | MS.gene06769:CDS | 35.0% |
| ! | TTTTGAATCAGAAACTCAGC+AGG | - | chr3.3:78272141-78272160 | MS.gene06769:intron | 35.0% |
| !! | CCAACAAAATGACTTGGTAA+AGG | + | chr3.3:78269554-78269573 | None:intergenic | 35.0% |
| !! | CCTTTACCAAGTCATTTTGT+TGG | - | chr3.3:78269551-78269570 | MS.gene06769:intron | 35.0% |
| !! | CTCTTACTTTTACAGAGAGA+AGG | - | chr3.3:78270247-78270266 | MS.gene06769:intron | 35.0% |
| !! | GCCTTCATTGTTTTATTCAC+AGG | - | chr3.3:78270837-78270856 | MS.gene06769:CDS | 35.0% |
| !!! | AACTGTTAGTTTTGTCTGAG+GGG | - | chr3.3:78271984-78272003 | MS.gene06769:CDS | 35.0% |
| !!! | CAACTGTTAGTTTTGTCTGA+GGG | - | chr3.3:78271983-78272002 | MS.gene06769:CDS | 35.0% |
| AACAAAAGGTCAGGGAAGAA+AGG | + | chr3.3:78272690-78272709 | None:intergenic | 40.0% | |
| AACATTAGAGCGACGAGAAA+TGG | + | chr3.3:78269164-78269183 | None:intergenic | 40.0% | |
| AAGAACAGCATACCTTGGAT+AGG | + | chr3.3:78271136-78271155 | None:intergenic | 40.0% | |
| AAGGGCAAGGAAGAAATTAC+AGG | + | chr3.3:78269476-78269495 | None:intergenic | 40.0% | |
| AAGGTATGATTCATCCCTTG+AGG | - | chr3.3:78270665-78270684 | MS.gene06769:intron | 40.0% | |
| AATACTCTTGTTCGGTTTCG+TGG | - | chr3.3:78268875-78268894 | MS.gene06769:intron | 40.0% | |
| AATGCAAACTATAAGCTCCC+AGG | + | chr3.3:78272399-78272418 | None:intergenic | 40.0% | |
| ACTCCTATCTGCTTGTATTG+CGG | + | chr3.3:78272598-78272617 | None:intergenic | 40.0% | |
| AGAACATTGGCAAATGACCA+AGG | - | chr3.3:78272787-78272806 | MS.gene06769:CDS | 40.0% | |
| ATATACCTAGCATGGTACAG+AGG | + | chr3.3:78270498-78270517 | None:intergenic | 40.0% | |
| ATGAATCATACCTTGTCAGC+TGG | + | chr3.3:78270659-78270678 | None:intergenic | 40.0% | |
| ATTTCAAAGTTGGGCAGAAG+TGG | - | chr3.3:78272282-78272301 | MS.gene06769:CDS | 40.0% | |
| CAAGACACCAGTTTCTAATC+TGG | + | chr3.3:78271612-78271631 | None:intergenic | 40.0% | |
| CAATCTGTTCAGAGAAGGTA+GGG | + | chr3.3:78272714-78272733 | None:intergenic | 40.0% | |
| CAATGCTCCAGATTAGAAAC+TGG | - | chr3.3:78271602-78271621 | MS.gene06769:intron | 40.0% | |
| CACCAAAGCTTAAACACATG+AGG | + | chr3.3:78272751-78272770 | None:intergenic | 40.0% | |
| CACCAACCTGCTTAAATCTT+GGG | + | chr3.3:78272628-78272647 | None:intergenic | 40.0% | |
| CATCTGAGCAAAGAGAAAAG+AGG | - | chr3.3:78269417-78269436 | MS.gene06769:CDS | 40.0% | |
| CATTTGGTATGTGTTTCAGG+TGG | - | chr3.3:78271916-78271935 | MS.gene06769:intron | 40.0% | |
| CCTCAGACAAAACTAACAGT+TGG | + | chr3.3:78271985-78272004 | None:intergenic | 40.0% | |
| CTAAATCACTTTCTACCACC+TGG | + | chr3.3:78272572-78272591 | None:intergenic | 40.0% | |
| GAGATTGCTTTACTGTGTTC+CGG | - | chr3.3:78269130-78269149 | MS.gene06769:intron | 40.0% | |
| GCATAAATCACATGTGTAGG+AGG | + | chr3.3:78271233-78271252 | None:intergenic | 40.0% | |
| GGAATGATTCAGGATATGCT+TGG | - | chr3.3:78268896-78268915 | MS.gene06769:intron | 40.0% | |
| GGGTTTGATGTGATTTGAAG+TGG | + | chr3.3:78268766-78268785 | None:intergenic | 40.0% | |
| GTTACCAATCTGTTCAGAGA+AGG | + | chr3.3:78272719-78272738 | None:intergenic | 40.0% | |
| GTTGTTTATGCATAGGTTCC+GGG | - | chr3.3:78269335-78269354 | MS.gene06769:CDS | 40.0% | |
| TACCCAAGATTTAAGCAGGT+TGG | - | chr3.3:78272623-78272642 | MS.gene06769:intron | 40.0% | |
| TCACAGGAAACTTTCAGTTC+AGG | - | chr3.3:78270853-78270872 | MS.gene06769:CDS | 40.0% | |
| TCACCAACCTGCTTAAATCT+TGG | + | chr3.3:78272629-78272648 | None:intergenic | 40.0% | |
| TCAGATGTCCAATCCATAGA+TGG | + | chr3.3:78269404-78269423 | None:intergenic | 40.0% | |
| TCGCGGTTGTTTAAAGAAGT+CGG | + | chr3.3:78268650-78268669 | None:intergenic | 40.0% | |
| TGAATCATACCTTGTCAGCT+GGG | + | chr3.3:78270658-78270677 | None:intergenic | 40.0% | |
| TTACCTGAGAGAGATGTGAT+TGG | + | chr3.3:78268712-78268731 | None:intergenic | 40.0% | |
| TTCTTTAAACAACCGCGACT+GGG | - | chr3.3:78268652-78268671 | MS.gene06769:CDS | 40.0% | |
| TTGCCAATGTTCTAGTGACA+GGG | + | chr3.3:78272780-78272799 | None:intergenic | 40.0% | |
| TTGGCAAATGACCAAGGAAT+TGG | - | chr3.3:78272793-78272812 | MS.gene06769:CDS | 40.0% | |
| TTGGCAATCCATCTATGGAT+TGG | - | chr3.3:78269393-78269412 | MS.gene06769:CDS | 40.0% | |
| TTGTATGCTAAGAGTAAGGC+AGG | + | chr3.3:78272246-78272265 | None:intergenic | 40.0% | |
| TTTGCCAATGTTCTAGTGAC+AGG | + | chr3.3:78272781-78272800 | None:intergenic | 40.0% | |
| ! | ACGAAACCGAACAAGAGTAT+TGG | + | chr3.3:78268876-78268895 | None:intergenic | 40.0% |
| ! | AGCTCTCCTTTCTTTTTGGA+TGG | - | chr3.3:78271767-78271786 | MS.gene06769:intron | 40.0% |
| ! | ATTTTCCTCTGTACCATGCT+AGG | - | chr3.3:78270490-78270509 | MS.gene06769:intron | 40.0% |
| !! | CGAAACCGAACAAGAGTATT+GGG | + | chr3.3:78268875-78268894 | None:intergenic | 40.0% |
| !! | GTTTTGACGATTCCAACACA+TGG | + | chr3.3:78270171-78270190 | None:intergenic | 40.0% |
| !! | TAGTTGTTTTCCGATAGACG+CGG | + | chr3.3:78271392-78271411 | None:intergenic | 40.0% |
| !! | TGAACAGCTTTTAGGAGTTC+TGG | - | chr3.3:78270021-78270040 | MS.gene06769:CDS | 40.0% |
| !! | TTGGTTTGGATGGACTTGAT+TGG | + | chr3.3:78269857-78269876 | None:intergenic | 40.0% |
| !!! | CCAACTGTTAGTTTTGTCTG+AGG | - | chr3.3:78271982-78272001 | MS.gene06769:CDS | 40.0% |
| !!! | GGATTGATTTGCTTTTGACC+AGG | - | chr3.3:78271297-78271316 | MS.gene06769:intron | 40.0% |
| !!! | GTCTAGCTCTCCTTTCTTTT+TGG | - | chr3.3:78271763-78271782 | MS.gene06769:intron | 40.0% |
| !!! | TTGATTTGCTTTTGACCAGG+TGG | - | chr3.3:78271300-78271319 | MS.gene06769:intron | 40.0% |
| AACCATTTGCTTGGAAGCTG+TGG | - | chr3.3:78272057-78272076 | MS.gene06769:intron | 45.0% | |
| ACATTGCATACCCCTTACAG+TGG | - | chr3.3:78271444-78271463 | MS.gene06769:intron | 45.0% | |
| AGACATCTCTCAGCTGTTCT+AGG | - | chr3.3:78271071-78271090 | MS.gene06769:CDS | 45.0% | |
| AGAGAAGGTAGGGCAACAAA+AGG | + | chr3.3:78272704-78272723 | None:intergenic | 45.0% | |
| AGCAAAGAAACCGCGTCTAT+CGG | - | chr3.3:78271379-78271398 | MS.gene06769:intron | 45.0% | |
| AGCAATCTCCGTTCCCAAAT+AGG | + | chr3.3:78269119-78269138 | None:intergenic | 45.0% | |
| AGCAGTTGGCAATCCATCTA+TGG | - | chr3.3:78269388-78269407 | MS.gene06769:CDS | 45.0% | |
| AGCTGGAACTCTCAATTCTG+TGG | - | chr3.3:78271679-78271698 | MS.gene06769:intron | 45.0% | |
| CAAAGAGAAAAGAGGAGGAG+AGG | - | chr3.3:78269425-78269444 | MS.gene06769:CDS | 45.0% | |
| CCAAAACCTGACTTCGTCAA+AGG | - | chr3.3:78271029-78271048 | MS.gene06769:CDS | 45.0% | |
| CCAATCTGTTCAGAGAAGGT+AGG | + | chr3.3:78272715-78272734 | None:intergenic | 45.0% | |
| CCTACCTTCTCTGAACAGAT+TGG | - | chr3.3:78272712-78272731 | MS.gene06769:CDS | 45.0% | |
| CGCCTCATGTGTTTAAGCTT+TGG | - | chr3.3:78272746-78272765 | MS.gene06769:CDS | 45.0% | |
| CGTGGTACCTGCAATTTAGA+GGG | + | chr3.3:78270818-78270837 | None:intergenic | 45.0% | |
| CTCTGCTGATACGCCTATTT+GGG | - | chr3.3:78269103-78269122 | MS.gene06769:intron | 45.0% | |
| CTGAGAGAGATGTGATTGGT+CGG | + | chr3.3:78268708-78268727 | None:intergenic | 45.0% | |
| CTGAGCAAAGAGAAAAGAGG+AGG | - | chr3.3:78269420-78269439 | MS.gene06769:CDS | 45.0% | |
| CTGATACGCCTATTTGGGAA+CGG | - | chr3.3:78269108-78269127 | MS.gene06769:intron | 45.0% | |
| CTTCTTTAAACAACCGCGAC+TGG | - | chr3.3:78268651-78268670 | MS.gene06769:CDS | 45.0% | |
| GCATGGTACAGAGGAAAATG+AGG | + | chr3.3:78270489-78270508 | None:intergenic | 45.0% | |
| GCTGGAACTCTCAATTCTGT+GGG | - | chr3.3:78271680-78271699 | MS.gene06769:intron | 45.0% | |
| GGGTTTCACGTATCTGATAG+TGG | + | chr3.3:78268855-78268874 | None:intergenic | 45.0% | |
| GGTGTGTCATATACCTAGCA+TGG | + | chr3.3:78270506-78270525 | None:intergenic | 45.0% | |
| GGTTCAAGAGAAGAGAGTGA+AGG | + | chr3.3:78268745-78268764 | None:intergenic | 45.0% | |
| GTTACTGCATCTCCTATCCA+AGG | - | chr3.3:78271121-78271140 | MS.gene06769:CDS | 45.0% | |
| TAAAGAAGTCGGATCGGAAC+CGG | + | chr3.3:78268639-78268658 | None:intergenic | 45.0% | |
| TACATCTGATCCAGAGCTTC+AGG | - | chr3.3:78270574-78270593 | MS.gene06769:intron | 45.0% | |
| TCAGCTGGGAAATGATGCAA+GGG | + | chr3.3:78270644-78270663 | None:intergenic | 45.0% | |
| TCCAAGCAAATGGTTGCAGA+AGG | + | chr3.3:78272052-78272071 | None:intergenic | 45.0% | |
| TCGGTTTCGTGGAATGATTC+AGG | - | chr3.3:78268886-78268905 | MS.gene06769:intron | 45.0% | |
| TCTCAACATTCCATCCCTGT+CGG | - | chr3.3:78269077-78269096 | MS.gene06769:intron | 45.0% | |
| TCTCAAGAATGGAGGGCAAT+GGG | + | chr3.3:78271264-78271283 | None:intergenic | 45.0% | |
| TCTCGAGGCACAAAGAAACA+AGG | + | chr3.3:78269512-78269531 | None:intergenic | 45.0% | |
| TCTTTAAACAACCGCGACTG+GGG | - | chr3.3:78268653-78268672 | MS.gene06769:CDS | 45.0% | |
| TGAGTGGGTACCTCTATCAT+AGG | + | chr3.3:78270896-78270915 | None:intergenic | 45.0% | |
| TTCAGCTTCAGTTCAGACTC+TGG | + | chr3.3:78270527-78270546 | None:intergenic | 45.0% | |
| TTCCACAGCTTCCAAGCAAA+TGG | + | chr3.3:78272062-78272081 | None:intergenic | 45.0% | |
| TTCTCAAGAATGGAGGGCAA+TGG | + | chr3.3:78271265-78271284 | None:intergenic | 45.0% | |
| TTGACGATTCCAACACATGG+AGG | + | chr3.3:78270168-78270187 | None:intergenic | 45.0% | |
| TTGCCGCAATACAAGCAGAT+AGG | - | chr3.3:78272592-78272611 | MS.gene06769:intron | 45.0% | |
| ! | AGGGGTATGCAATGTGTGAA+AGG | + | chr3.3:78271439-78271458 | None:intergenic | 45.0% |
| ! | CCTTTGACGAAGTCAGGTTT+TGG | + | chr3.3:78271032-78271051 | None:intergenic | 45.0% |
| ! | CTTATAAACCAGGTGCTGTG+AGG | + | chr3.3:78270770-78270789 | None:intergenic | 45.0% |
| ! | TAACTGACTCATAGGTCCAG+TGG | - | chr3.3:78270085-78270104 | MS.gene06769:intron | 45.0% |
| ! | TGCAATGTGTGAAAGGCACA+AGG | + | chr3.3:78271432-78271451 | None:intergenic | 45.0% |
| !! | AAGCAGAAGCTTTGGAAGCT+TGG | - | chr3.3:78272080-78272099 | MS.gene06769:intron | 45.0% |
| !! | AATAGGGTACTGACGACTTG+AGG | + | chr3.3:78269915-78269934 | None:intergenic | 45.0% |
| !! | ATAGGGTACTGACGACTTGA+GGG | + | chr3.3:78269914-78269933 | None:intergenic | 45.0% |
| !! | GAAGCTCTGGATCAGATGTA+AGG | + | chr3.3:78270574-78270593 | None:intergenic | 45.0% |
| !! | GATAGAGGTACCCACTCAAA+TGG | - | chr3.3:78270898-78270917 | MS.gene06769:intron | 45.0% |
| !! | TGACTTCGTCAAAGGCATCA+GGG | - | chr3.3:78271037-78271056 | MS.gene06769:CDS | 45.0% |
| !! | TTCACGTATCTGATAGTGGC+TGG | + | chr3.3:78268851-78268870 | None:intergenic | 45.0% |
| ACGAGAAATGGACAGCTCAC+CGG | + | chr3.3:78269152-78269171 | None:intergenic | 50.0% | |
| ACTGACGACTTGAGGGTCTA+TGG | + | chr3.3:78269907-78269926 | None:intergenic | 50.0% | |
| AGCAAATGGTTGCAGAAGGC+CGG | + | chr3.3:78272048-78272067 | None:intergenic | 50.0% | |
| AGCTGTGGAAGCAGAAGCTT+TGG | - | chr3.3:78272072-78272091 | MS.gene06769:intron | 50.0% | |
| AGGTAGGGCAACAAAAGGTC+AGG | + | chr3.3:78272699-78272718 | None:intergenic | 50.0% | |
| ATACTAGAGCCAGCGATCTC+AGG | + | chr3.3:78270313-78270332 | None:intergenic | 50.0% | |
| ATAGTGGCTGGTGTGAGAAG+CGG | + | chr3.3:78268839-78268858 | None:intergenic | 50.0% | |
| ATCTGATCCAGAGCTTCAGG+AGG | - | chr3.3:78270577-78270596 | MS.gene06769:intron | 50.0% | |
| ATTGGTCGGAGAGAAGGTTG+CGG | + | chr3.3:78268694-78268713 | None:intergenic | 50.0% | |
| CCAATGTTCTAGTGACAGGG+TGG | + | chr3.3:78272777-78272796 | None:intergenic | 50.0% | |
| CCACCCTGTCACTAGAACAT+TGG | - | chr3.3:78272774-78272793 | MS.gene06769:CDS | 50.0% | |
| CGACCAATCACATCTCTCTC+AGG | - | chr3.3:78268706-78268725 | MS.gene06769:intron | 50.0% | |
| CTGATGCCTTTGACGAAGTC+AGG | + | chr3.3:78271038-78271057 | None:intergenic | 50.0% | |
| CTGTGGGTGTAGAGAATGCA+AGG | - | chr3.3:78271696-78271715 | MS.gene06769:CDS | 50.0% | |
| GAACCTTCAGCAGAAGCAGT+TGG | - | chr3.3:78269374-78269393 | MS.gene06769:CDS | 50.0% | |
| GCACAAGGTTCTTGACAGCA+TGG | + | chr3.3:78271417-78271436 | None:intergenic | 50.0% | |
| GCATCATTTCCCAGCTGACA+AGG | - | chr3.3:78270646-78270665 | MS.gene06769:intron | 50.0% | |
| GCCTTCTGCAACCATTTGCT+TGG | - | chr3.3:78272048-78272067 | MS.gene06769:intron | 50.0% | |
| GCGTGGTACCTGCAATTTAG+AGG | + | chr3.3:78270819-78270838 | None:intergenic | 50.0% | |
| GCTCTGCTGATACGCCTATT+TGG | - | chr3.3:78269102-78269121 | MS.gene06769:intron | 50.0% | |
| GGTAGGGCAACAAAAGGTCA+GGG | + | chr3.3:78272698-78272717 | None:intergenic | 50.0% | |
| GGTGTCTTGCAACTAGCTGA+AGG | - | chr3.3:78271623-78271642 | MS.gene06769:intron | 50.0% | |
| GTCAGCTGGGAAATGATGCA+AGG | + | chr3.3:78270645-78270664 | None:intergenic | 50.0% | |
| TATCAGCAGAGCAACCGACA+GGG | + | chr3.3:78269094-78269113 | None:intergenic | 50.0% | |
| TTCTATGTCCTCACAGCACC+TGG | - | chr3.3:78270759-78270778 | MS.gene06769:CDS | 50.0% | |
| TTGCCAACTGCTTCTGCTGA+AGG | + | chr3.3:78269380-78269399 | None:intergenic | 50.0% | |
| ! | AGGGTAGATGCTCTTGCTGT+GGG | - | chr3.3:78271328-78271347 | MS.gene06769:intron | 50.0% |
| ! | GATGTGATTGGTCGGAGAGA+AGG | + | chr3.3:78268700-78268719 | None:intergenic | 50.0% |
| ! | TTCACAGGTTGAGGGTGATG+AGG | - | chr3.3:78269658-78269677 | MS.gene06769:CDS | 50.0% |
| ! | TTTTGACCAGGTGGAAGCCA+GGG | - | chr3.3:78271309-78271328 | MS.gene06769:intron | 50.0% |
| !! | AAGCTTTGGAAGCTTGGAGG+TGG | - | chr3.3:78272086-78272105 | MS.gene06769:intron | 50.0% |
| !! | CAGAAGCTTTGGAAGCTTGG+AGG | - | chr3.3:78272083-78272102 | MS.gene06769:intron | 50.0% |
| !! | CTGACTTCGTCAAAGGCATC+AGG | - | chr3.3:78271036-78271055 | MS.gene06769:CDS | 50.0% |
| !! | TATGGAAGGATGGTTCGGTG+TGG | - | chr3.3:78269030-78269049 | MS.gene06769:intron | 50.0% |
| AGGTTCCGGGACTGAATTCG+TGG | - | chr3.3:78269348-78269367 | MS.gene06769:CDS | 55.0% | |
| ATGGTTGCAGAAGGCCGGAT+AGG | + | chr3.3:78272043-78272062 | None:intergenic | 55.0% | |
| CAGGGTAGATGCTCTTGCTG+TGG | - | chr3.3:78271327-78271346 | MS.gene06769:intron | 55.0% | |
| GCGGAGTCTCTCCAATTCCT+TGG | + | chr3.3:78272807-78272826 | None:intergenic | 55.0% | |
| GGTTCCGGGACTGAATTCGT+GGG | - | chr3.3:78269349-78269368 | MS.gene06769:CDS | 55.0% | |
| GTATCAGCAGAGCAACCGAC+AGG | + | chr3.3:78269095-78269114 | None:intergenic | 55.0% | |
| GTTGAGGGTGATGAGGTCGA+AGG | - | chr3.3:78269665-78269684 | MS.gene06769:CDS | 55.0% | |
| TACAGCTCCCTGAGACTGAG+AGG | + | chr3.3:78270290-78270309 | None:intergenic | 55.0% | |
| TCGTTGTCCTCCTGAAGCTC+TGG | + | chr3.3:78270587-78270606 | None:intergenic | 55.0% | |
| TCTGCCCACGAATTCAGTCC+CGG | + | chr3.3:78269356-78269375 | None:intergenic | 55.0% | |
| TGGCGAGGAGATCGTACTGT+GGG | + | chr3.3:78268571-78268590 | None:intergenic | 55.0% | |
| TTGGCGAGGAGATCGTACTG+TGG | + | chr3.3:78268572-78268591 | None:intergenic | 55.0% | |
| ! | CTTTTGACCAGGTGGAAGCC+AGG | - | chr3.3:78271308-78271327 | MS.gene06769:intron | 55.0% |
| ! | GGGTAGATGCTCTTGCTGTG+GGG | - | chr3.3:78271329-78271348 | MS.gene06769:intron | 55.0% |
| !! | CACAGCAAGAGCATCTACCC+TGG | + | chr3.3:78271329-78271348 | None:intergenic | 55.0% |
| AGAAGTCGGATCGGAACCGG+TGG | + | chr3.3:78268636-78268655 | None:intergenic | 60.0% | |
| AGCAGAGCAACCGACAGGGA+TGG | + | chr3.3:78269090-78269109 | None:intergenic | 60.0% | |
| ATCGGAACCGGTGGCTATGG+CGG | + | chr3.3:78268627-78268646 | None:intergenic | 60.0% | |
| CATCTACCCTGGCTTCCACC+TGG | + | chr3.3:78271318-78271337 | None:intergenic | 60.0% | |
| CTCCCTGAGACTGAGAGGCA+GGG | + | chr3.3:78270285-78270304 | None:intergenic | 60.0% | |
| GATCTCCTCGCCAACCCACT+CGG | - | chr3.3:78268578-78268597 | MS.gene06769:CDS | 60.0% | |
| GGAGCTGTACCTGAGATCGC+TGG | - | chr3.3:78270301-78270320 | MS.gene06769:CDS | 60.0% | |
| TCCCCTGCCTCTCAGTCTCA+GGG | - | chr3.3:78270280-78270299 | MS.gene06769:CDS | 60.0% | |
| TCCCTGAGACTGAGAGGCAG+GGG | + | chr3.3:78270284-78270303 | None:intergenic | 60.0% | |
| TGGAGAGACTCCGCAGAGAG+AGG | - | chr3.3:78272813-78272832 | MS.gene06769:CDS | 60.0% | |
| TGGATCTGACCGCACCGAGT+GGG | + | chr3.3:78268595-78268614 | None:intergenic | 60.0% | |
| TTCCCCTGCCTCTCAGTCTC+AGG | - | chr3.3:78270279-78270298 | MS.gene06769:CDS | 60.0% | |
| !! | GGAAGGATGGTTCGGTGTGG+AGG | - | chr3.3:78269033-78269052 | MS.gene06769:intron | 60.0% |
| CGGATCGGAACCGGTGGCTA+TGG | + | chr3.3:78268630-78268649 | None:intergenic | 65.0% | |
| GATCGATGACGCCCCAGTCG+CGG | + | chr3.3:78268667-78268686 | None:intergenic | 65.0% | |
| GCTCCCTGAGACTGAGAGGC+AGG | + | chr3.3:78270286-78270305 | None:intergenic | 65.0% | |
| GTGGATCTGACCGCACCGAG+TGG | + | chr3.3:78268596-78268615 | None:intergenic | 65.0% | |
| TCTGACCGCACCGAGTGGGT+TGG | + | chr3.3:78268591-78268610 | None:intergenic | 65.0% | |
| TTCGACGCCGCCATAGCCAC+CGG | - | chr3.3:78268617-78268636 | MS.gene06769:CDS | 65.0% | |
| ! | CCTCGCCAACCCACTCGGTG+CGG | - | chr3.3:78268583-78268602 | MS.gene06769:CDS | 70.0% |
| ! | GGCTATGGCGGCGTCGAAGG+TGG | + | chr3.3:78268615-78268634 | None:intergenic | 70.0% |
| ! | GGTGGCTATGGCGGCGTCGA+AGG | + | chr3.3:78268618-78268637 | None:intergenic | 70.0% |
| !! | CCGCACCGAGTGGGTTGGCG+AGG | + | chr3.3:78268586-78268605 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78268560 | 78272844 | 78268560 | ID=MS.gene06769 |
| chr3.3 | mRNA | 78268560 | 78272844 | 78268560 | ID=MS.gene06769.t1;Parent=MS.gene06769 |
| chr3.3 | exon | 78272677 | 78272844 | 78272677 | ID=MS.gene06769.t1.exon1;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78272677 | 78272844 | 78272677 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78272458 | 78272571 | 78272458 | ID=MS.gene06769.t1.exon2;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78272458 | 78272571 | 78272458 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78272253 | 78272366 | 78272253 | ID=MS.gene06769.t1.exon3;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78272253 | 78272366 | 78272253 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78271929 | 78272054 | 78271929 | ID=MS.gene06769.t1.exon4;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78271929 | 78272054 | 78271929 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78271695 | 78271739 | 78271695 | ID=MS.gene06769.t1.exon5;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78271695 | 78271739 | 78271695 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78271023 | 78271142 | 78271023 | ID=MS.gene06769.t1.exon6;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78271023 | 78271142 | 78271023 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78270737 | 78270892 | 78270737 | ID=MS.gene06769.t1.exon7;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78270737 | 78270892 | 78270737 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78270500 | 78270574 | 78270500 | ID=MS.gene06769.t1.exon8;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78270500 | 78270574 | 78270500 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78270262 | 78270375 | 78270262 | ID=MS.gene06769.t1.exon9;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78270262 | 78270375 | 78270262 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78269886 | 78270085 | 78269886 | ID=MS.gene06769.t1.exon10;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78269886 | 78270085 | 78269886 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78269656 | 78269791 | 78269656 | ID=MS.gene06769.t1.exon11;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78269656 | 78269791 | 78269656 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78269242 | 78269469 | 78269242 | ID=MS.gene06769.t1.exon12;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78269242 | 78269469 | 78269242 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78268764 | 78268831 | 78268764 | ID=MS.gene06769.t1.exon13;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78268764 | 78268831 | 78268764 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| chr3.3 | exon | 78268560 | 78268674 | 78268560 | ID=MS.gene06769.t1.exon14;Parent=MS.gene06769.t1 |
| chr3.3 | CDS | 78268560 | 78268674 | 78268560 | ID=cds.MS.gene06769.t1;Parent=MS.gene06769.t1 |
| Gene Sequence |
| Protein sequence |
