Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067734.t1 | XP_003606113.1 | 99 | 420 | 4 | 0 | 1 | 420 | 1 | 420 | 1.60E-234 | 821.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067734.t1 | Q9ZW88 | 72.6 | 419 | 115 | 0 | 2 | 420 | 1 | 419 | 6.2e-174 | 611.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067734.t1 | G7JIE1 | 99.0 | 420 | 4 | 0 | 1 | 420 | 1 | 420 | 1.2e-234 | 821.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36809 | MS.gene067734 | PPI |
| MS.gene32305 | MS.gene067734 | PPI |
| MS.gene36810 | MS.gene067734 | PPI |
| MS.gene36743 | MS.gene067734 | PPI |
| MS.gene067734 | MS.gene072231 | PPI |
| MS.gene055754 | MS.gene067734 | PPI |
| MS.gene36752 | MS.gene067734 | PPI |
| MS.gene32300 | MS.gene067734 | PPI |
| MS.gene36764 | MS.gene067734 | PPI |
| MS.gene36942 | MS.gene067734 | PPI |
| MS.gene36763 | MS.gene067734 | PPI |
| MS.gene36804 | MS.gene067734 | PPI |
| MS.gene032379 | MS.gene067734 | PPI |
| MS.gene36807 | MS.gene067734 | PPI |
| MS.gene067734 | MS.gene36943 | PPI |
| MS.gene007794 | MS.gene067734 | PPI |
| MS.gene072244 | MS.gene067734 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067734.t1 | MTR_4g053260 | 99.048 | 420 | 4 | 0 | 1 | 420 | 1 | 420 | 0.0 | 850 |
| MS.gene067734.t1 | MTR_1g060040 | 66.587 | 419 | 140 | 0 | 2 | 420 | 1 | 419 | 0.0 | 547 |
| MS.gene067734.t1 | MTR_7g104490 | 63.246 | 419 | 154 | 0 | 2 | 420 | 1 | 419 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067734.t1 | AT1G67190 | 72.554 | 419 | 115 | 0 | 2 | 420 | 1 | 419 | 0.0 | 611 |
| MS.gene067734.t1 | AT1G67190 | 72.554 | 419 | 115 | 0 | 2 | 420 | 1 | 419 | 0.0 | 611 |
Find 88 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCATCTGGTAAAATTT+TGG | 0.172000 | 4.2:+49191012 | None:intergenic |
| TGAGGATGAGGTTGTGGATT+TGG | 0.254844 | 4.2:-49190938 | MS.gene067734:CDS |
| CAGTTTGGACAAGTTTATAT+TGG | 0.269366 | 4.2:-49191214 | MS.gene067734:CDS |
| TCTGGAGAATGTTGTTGTTT+TGG | 0.290641 | 4.2:-49190818 | MS.gene067734:CDS |
| TAAGCTGGAAATACTTGATT+TGG | 0.306970 | 4.2:-49191466 | MS.gene067734:CDS |
| ATCGACATCTTCCATCAAAA+TGG | 0.308813 | 4.2:+49191608 | None:intergenic |
| AACCATGGATGTGGTGAAAT+TGG | 0.318949 | 4.2:+49190657 | None:intergenic |
| TTTAAAGAGGCTTAGGCTTT+GGG | 0.320285 | 4.2:-49190977 | MS.gene067734:CDS |
| ATTTAAAGAGGCTTAGGCTT+TGG | 0.321881 | 4.2:-49190978 | MS.gene067734:CDS |
| CAGCTTCCTGTTGAAGTGAT+TGG | 0.330061 | 4.2:-49191837 | MS.gene067734:CDS |
| CACGGAAACCTCTGATAATT+CGG | 0.345988 | 4.2:+49191417 | None:intergenic |
| AGTGTCATACATCTTGATAT+TGG | 0.380971 | 4.2:-49191090 | MS.gene067734:CDS |
| TGCGTTGGATTTGAGTCTTT+TGG | 0.381205 | 4.2:-49191358 | MS.gene067734:CDS |
| CGGCTTCTGCTGTTATTGCT+TGG | 0.385178 | 4.2:-49191578 | MS.gene067734:CDS |
| CGTCAAATTTAAAGAGGCTT+AGG | 0.387919 | 4.2:-49190984 | MS.gene067734:CDS |
| TTTACAAGGCTCTTCTCATC+TGG | 0.390921 | 4.2:-49190836 | MS.gene067734:CDS |
| TATGCCGAATGTTAACATTC+TGG | 0.391323 | 4.2:-49191505 | MS.gene067734:CDS |
| TGTCCTTTAGCTCGAATGAT+TGG | 0.393437 | 4.2:-49191716 | MS.gene067734:CDS |
| TGGAGCATAATTCCATTGTT+GGG | 0.394380 | 4.2:-49191446 | MS.gene067734:CDS |
| TGACTAGCTTCTTGAGAATA+GGG | 0.400290 | 4.2:+49190731 | None:intergenic |
| AGCTTCCTGTTGAAGTGATT+GGG | 0.400824 | 4.2:-49191836 | MS.gene067734:CDS |
| AGCTTTGGAGCTTGTTAATC+CGG | 0.402983 | 4.2:-49191313 | MS.gene067734:CDS |
| GTCGATCCTAAAATTCTTCA+AGG | 0.405823 | 4.2:+49191119 | None:intergenic |
| TTGGAGCATAATTCCATTGT+TGG | 0.407591 | 4.2:-49191447 | MS.gene067734:CDS |
| AGAGATGGAGTTCTTCACTA+TGG | 0.408458 | 4.2:-49190859 | MS.gene067734:CDS |
| CGAGATCGTCAAATTTAAAG+AGG | 0.422365 | 4.2:-49190990 | MS.gene067734:CDS |
| TCAGCAACTTCACAATCATT+TGG | 0.423879 | 4.2:-49191035 | MS.gene067734:CDS |
| TGATGATGAGGATGAGGTTG+TGG | 0.427773 | 4.2:-49190944 | MS.gene067734:CDS |
| ATGTTCCCAATCACTTCAAC+AGG | 0.428833 | 4.2:+49191831 | None:intergenic |
| GTGTCCGAGGATTGAAGCTT+TGG | 0.433033 | 4.2:-49191328 | MS.gene067734:CDS |
| TAAGCAGCCCCTCGACCCAC+TGG | 0.433128 | 4.2:+49190761 | None:intergenic |
| TTAACATTCTGGAGATTTGT+GGG | 0.446810 | 4.2:-49191494 | MS.gene067734:CDS |
| CCTCGGCAACATGCAAGAAA+TGG | 0.450786 | 4.2:-49191770 | MS.gene067734:CDS |
| ATGACTAGCTTCTTGAGAAT+AGG | 0.451924 | 4.2:+49190730 | None:intergenic |
| ATCTCCAGAATGTTAACATT+CGG | 0.457841 | 4.2:+49191501 | None:intergenic |
| TTGACGATCTCGAAATCATC+TGG | 0.458040 | 4.2:+49191001 | None:intergenic |
| GTTAACATTCTGGAGATTTG+TGG | 0.459161 | 4.2:-49191495 | MS.gene067734:CDS |
| TTATGTTGAAGCAATCAGTT+TGG | 0.472225 | 4.2:-49191229 | MS.gene067734:CDS |
| AGCTCCAAAGCTTCAATCCT+CGG | 0.473894 | 4.2:+49191324 | None:intergenic |
| TTTGGACAAGTTTATATTGG+AGG | 0.477597 | 4.2:-49191211 | MS.gene067734:CDS |
| GGAAGATGTCGATGAATTCT+CGG | 0.479221 | 4.2:-49191598 | MS.gene067734:CDS |
| GCATCAGACATTGCAATCTC+CGG | 0.479437 | 4.2:+49191294 | None:intergenic |
| CTCAAGAAGCTAGTCATTCA+CGG | 0.479475 | 4.2:-49190724 | MS.gene067734:CDS |
| GGATGTGATGTTTGATGATG+AGG | 0.482977 | 4.2:-49190956 | MS.gene067734:CDS |
| CATCCCTTGCAGCCTTGAGA+TGG | 0.484957 | 4.2:+49191802 | None:intergenic |
| TGACCAATCATTCGAGCTAA+AGG | 0.485889 | 4.2:+49191713 | None:intergenic |
| GTTCTTCACTATGGTTTACA+AGG | 0.499525 | 4.2:-49190850 | MS.gene067734:CDS |
| AAGTTTATATTGGAGGCTGA+TGG | 0.502708 | 4.2:-49191204 | MS.gene067734:CDS |
| GATTTGTGGGAGGCATAAGC+TGG | 0.505044 | 4.2:-49191481 | MS.gene067734:CDS |
| CATTCACGGTGTTGTTTCCG+AGG | 0.515633 | 4.2:-49190710 | MS.gene067734:CDS |
| TTGCTTGGCTTATGTACACC+AGG | 0.528196 | 4.2:-49191563 | MS.gene067734:CDS |
| AGTTTATATTGGAGGCTGAT+GGG | 0.528821 | 4.2:-49191203 | MS.gene067734:CDS |
| CAACTGCCTCAGAGTCTCCC+TGG | 0.529681 | 4.2:+49191545 | None:intergenic |
| AGCCAATTTCACCACATCCA+TGG | 0.531036 | 4.2:-49190659 | MS.gene067734:CDS |
| CCATTTCTTGCATGTTGCCG+AGG | 0.538491 | 4.2:+49191770 | None:intergenic |
| CATCAGCTCAACCATGGATG+TGG | 0.539794 | 4.2:+49190648 | None:intergenic |
| CATCCATGGTTGAGCTGATG+AGG | 0.541436 | 4.2:-49190645 | MS.gene067734:CDS |
| ATCCCTTGCAGCCTTGAGAT+GGG | 0.542502 | 4.2:+49191803 | None:intergenic |
| ATCCCATCTCAAGGCTGCAA+GGG | 0.546912 | 4.2:-49191805 | MS.gene067734:CDS |
| GGAGCATAATTCCATTGTTG+GGG | 0.547575 | 4.2:-49191445 | MS.gene067734:CDS |
| TCTCAAGGCTGCAAGGGATG+TGG | 0.548007 | 4.2:-49191799 | MS.gene067734:CDS |
| TATCCCATCTCAAGGCTGCA+AGG | 0.556217 | 4.2:-49191806 | MS.gene067734:CDS |
| GATGTTTGATGATGAGGATG+AGG | 0.563175 | 4.2:-49190950 | MS.gene067734:CDS |
| TTCTTCATCAGATTTAGCCT+CGG | 0.564530 | 4.2:+49190693 | None:intergenic |
| AAGCAGCCCCTCGACCCACT+GGG | 0.569654 | 4.2:+49190762 | None:intergenic |
| TGTAATCAAAATCTCGAGAC+GGG | 0.572067 | 4.2:+49191668 | None:intergenic |
| TTGTGTTAGTATATCTGCGT+TGG | 0.586686 | 4.2:-49191373 | MS.gene067734:CDS |
| ATTCGGCTCAACCCCAACAA+TGG | 0.586694 | 4.2:+49191434 | None:intergenic |
| CTGAGTTATGATGTGAGAGA+TGG | 0.590837 | 4.2:-49190874 | MS.gene067734:CDS |
| ACATCTTGATATTGGCGAGA+CGG | 0.606995 | 4.2:-49191082 | MS.gene067734:CDS |
| GGTTGAGAATCTTGAGAGTG+TGG | 0.608485 | 4.2:-49191061 | MS.gene067734:CDS |
| AAGGGATGTGGTCATAGCCT+CGG | 0.609362 | 4.2:-49191787 | MS.gene067734:CDS |
| TCTCCTCATCAGCTCAACCA+TGG | 0.619817 | 4.2:+49190642 | None:intergenic |
| AACTCAGAGATAAATGACTC+AGG | 0.621606 | 4.2:+49190890 | None:intergenic |
| GTGTAATCAAAATCTCGAGA+CGG | 0.622617 | 4.2:+49191667 | None:intergenic |
| GATTGCAATGTCTGATGCAA+TGG | 0.623873 | 4.2:-49191289 | MS.gene067734:CDS |
| AATGGAAAGCGACTGCAACC+CGG | 0.628343 | 4.2:+49191626 | None:intergenic |
| GGGTTGAGCCGAATTATCAG+AGG | 0.628727 | 4.2:-49191425 | MS.gene067734:CDS |
| AGAGATAAATGACTCAGGTG+TGG | 0.630363 | 4.2:+49190895 | None:intergenic |
| AACGAAAGTGATTTCAAACA+CGG | 0.631215 | 4.2:+49191399 | None:intergenic |
| TCGAGCTAAAGGACAATGTG+TGG | 0.633617 | 4.2:+49191724 | None:intergenic |
| ACTCAGGTGTGGAAAGCAAG+TGG | 0.642907 | 4.2:+49190906 | None:intergenic |
| GAACATACTATCCCATCTCA+AGG | 0.653061 | 4.2:-49191814 | MS.gene067734:CDS |
| TGCTTGGCTTATGTACACCA+GGG | 0.664685 | 4.2:-49191562 | MS.gene067734:CDS |
| CGTCGAGCTACTCAATTCAA+CGG | 0.669195 | 4.2:+49191263 | None:intergenic |
| TGTACACCAGGGAGACTCTG+AGG | 0.674668 | 4.2:-49191551 | MS.gene067734:CDS |
| ACATTCTGGAGATTTGTGGG+AGG | 0.676084 | 4.2:-49191491 | MS.gene067734:CDS |
| GACGGGTCGTTGATAAATCG+CGG | 0.678396 | 4.2:+49191685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATCATCTGGTAAAATTT+TGG | + | chr4.2:49191443-49191462 | None:intergenic | 25.0% |
| AACGAAAGTGATTTCAAACA+CGG | + | chr4.2:49191056-49191075 | None:intergenic | 30.0% | |
| AGTGTCATACATCTTGATAT+TGG | - | chr4.2:49191362-49191381 | MS.gene067734:CDS | 30.0% | |
| ATCTCCAGAATGTTAACATT+CGG | + | chr4.2:49190954-49190973 | None:intergenic | 30.0% | |
| CAGTTTGGACAAGTTTATAT+TGG | - | chr4.2:49191238-49191257 | MS.gene067734:CDS | 30.0% | |
| TAAGCTGGAAATACTTGATT+TGG | - | chr4.2:49190986-49191005 | MS.gene067734:CDS | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | - | chr4.2:49191223-49191242 | MS.gene067734:CDS | 30.0% | |
| TTTGGACAAGTTTATATTGG+AGG | - | chr4.2:49191241-49191260 | MS.gene067734:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | - | chr4.2:49191302-49191321 | MS.gene067734:CDS | 30.0% |
| ! | TTAACATTCTGGAGATTTGT+GGG | - | chr4.2:49190958-49190977 | MS.gene067734:CDS | 30.0% |
| AACTCAGAGATAAATGACTC+AGG | + | chr4.2:49191565-49191584 | None:intergenic | 35.0% | |
| AAGTTTATATTGGAGGCTGA+TGG | - | chr4.2:49191248-49191267 | MS.gene067734:CDS | 35.0% | |
| AGTTTATATTGGAGGCTGAT+GGG | - | chr4.2:49191249-49191268 | MS.gene067734:CDS | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | + | chr4.2:49190847-49190866 | None:intergenic | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | - | chr4.2:49191474-49191493 | MS.gene067734:CDS | 35.0% | |
| CGAGATCGTCAAATTTAAAG+AGG | - | chr4.2:49191462-49191481 | MS.gene067734:CDS | 35.0% | |
| CGTCAAATTTAAAGAGGCTT+AGG | - | chr4.2:49191468-49191487 | MS.gene067734:CDS | 35.0% | |
| GTCGATCCTAAAATTCTTCA+AGG | + | chr4.2:49191336-49191355 | None:intergenic | 35.0% | |
| GTGTAATCAAAATCTCGAGA+CGG | + | chr4.2:49190788-49190807 | None:intergenic | 35.0% | |
| GTTCTTCACTATGGTTTACA+AGG | - | chr4.2:49191602-49191621 | MS.gene067734:CDS | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | - | chr4.2:49190947-49190966 | MS.gene067734:CDS | 35.0% | |
| TCAGCAACTTCACAATCATT+TGG | - | chr4.2:49191417-49191436 | MS.gene067734:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | - | chr4.2:49191006-49191025 | MS.gene067734:CDS | 35.0% | |
| TGTAATCAAAATCTCGAGAC+GGG | + | chr4.2:49190787-49190806 | None:intergenic | 35.0% | |
| TTCTTCATCAGATTTAGCCT+CGG | + | chr4.2:49191762-49191781 | None:intergenic | 35.0% | |
| TTGGAGCATAATTCCATTGT+TGG | - | chr4.2:49191005-49191024 | MS.gene067734:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | - | chr4.2:49191079-49191098 | MS.gene067734:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | - | chr4.2:49191475-49191494 | MS.gene067734:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | - | chr4.2:49191307-49191326 | MS.gene067734:CDS | 35.0% |
| ! | GTTAACATTCTGGAGATTTG+TGG | - | chr4.2:49190957-49190976 | MS.gene067734:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | - | chr4.2:49191308-49191327 | MS.gene067734:CDS | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | - | chr4.2:49191676-49191695 | MS.gene067734:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | - | chr4.2:49191675-49191694 | MS.gene067734:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | - | chr4.2:49191309-49191328 | MS.gene067734:CDS | 35.0% |
| !! | ATGACTAGCTTCTTGAGAAT+AGG | + | chr4.2:49191725-49191744 | None:intergenic | 35.0% |
| !! | TGACTAGCTTCTTGAGAATA+GGG | + | chr4.2:49191724-49191743 | None:intergenic | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | - | chr4.2:49191641-49191660 | MS.gene067734:CDS | 35.0% |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | - | chr4.2:49191634-49191653 | MS.gene067734:CDS | 35.0% |
| AACCATGGATGTGGTGAAAT+TGG | + | chr4.2:49191798-49191817 | None:intergenic | 40.0% | |
| ACATCTTGATATTGGCGAGA+CGG | - | chr4.2:49191370-49191389 | MS.gene067734:CDS | 40.0% | |
| AGAGATAAATGACTCAGGTG+TGG | + | chr4.2:49191560-49191579 | None:intergenic | 40.0% | |
| AGAGATGGAGTTCTTCACTA+TGG | - | chr4.2:49191593-49191612 | MS.gene067734:CDS | 40.0% | |
| AGCTTCCTGTTGAAGTGATT+GGG | - | chr4.2:49190616-49190635 | MS.gene067734:CDS | 40.0% | |
| ATGTTCCCAATCACTTCAAC+AGG | + | chr4.2:49190624-49190643 | None:intergenic | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | + | chr4.2:49191038-49191057 | None:intergenic | 40.0% | |
| CTCAAGAAGCTAGTCATTCA+CGG | - | chr4.2:49191728-49191747 | MS.gene067734:CDS | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | - | chr4.2:49191578-49191597 | MS.gene067734:CDS | 40.0% | |
| GAACATACTATCCCATCTCA+AGG | - | chr4.2:49190638-49190657 | MS.gene067734:CDS | 40.0% | |
| GATTGCAATGTCTGATGCAA+TGG | - | chr4.2:49191163-49191182 | MS.gene067734:CDS | 40.0% | |
| GGAAGATGTCGATGAATTCT+CGG | - | chr4.2:49190854-49190873 | MS.gene067734:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | - | chr4.2:49191007-49191026 | MS.gene067734:CDS | 40.0% | |
| TGACCAATCATTCGAGCTAA+AGG | + | chr4.2:49190742-49190761 | None:intergenic | 40.0% | |
| TTGACGATCTCGAAATCATC+TGG | + | chr4.2:49191454-49191473 | None:intergenic | 40.0% | |
| TTTACAAGGCTCTTCTCATC+TGG | - | chr4.2:49191616-49191635 | MS.gene067734:CDS | 40.0% | |
| ! | AGGGGACCTTGAAGAATTTT+AGG | - | chr4.2:49191327-49191346 | MS.gene067734:CDS | 40.0% |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | - | chr4.2:49191094-49191113 | MS.gene067734:CDS | 40.0% |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | - | chr4.2:49190736-49190755 | MS.gene067734:CDS | 40.0% |
| !! | AGACCATTTTTCAGACATCC+GGG | - | chr4.2:49190808-49190827 | MS.gene067734:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTTAATC+CGG | - | chr4.2:49191139-49191158 | MS.gene067734:CDS | 40.0% |
| !! | CAGACCATTTTTCAGACATC+CGG | - | chr4.2:49190807-49190826 | MS.gene067734:CDS | 40.0% |
| !! | GATGTTTGATGATGAGGATG+AGG | - | chr4.2:49191502-49191521 | MS.gene067734:CDS | 40.0% |
| !! | GGATGTGATGTTTGATGATG+AGG | - | chr4.2:49191496-49191515 | MS.gene067734:CDS | 40.0% |
| AGCCAATTTCACCACATCCA+TGG | - | chr4.2:49191793-49191812 | MS.gene067734:CDS | 45.0% | |
| AGCTCCAAAGCTTCAATCCT+CGG | + | chr4.2:49191131-49191150 | None:intergenic | 45.0% | |
| CAACCCGGATGTCTGAAAAA+TGG | + | chr4.2:49190814-49190833 | None:intergenic | 45.0% | |
| CAGCTTCCTGTTGAAGTGAT+TGG | - | chr4.2:49190615-49190634 | MS.gene067734:CDS | 45.0% | |
| CGTCGAGCTACTCAATTCAA+CGG | + | chr4.2:49191192-49191211 | None:intergenic | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | + | chr4.2:49191161-49191180 | None:intergenic | 45.0% | |
| GGTTGAGAATCTTGAGAGTG+TGG | - | chr4.2:49191391-49191410 | MS.gene067734:CDS | 45.0% | |
| TCGAGCTAAAGGACAATGTG+TGG | + | chr4.2:49190731-49190750 | None:intergenic | 45.0% | |
| TGAGGATGAGGTTGTGGATT+TGG | - | chr4.2:49191514-49191533 | MS.gene067734:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | - | chr4.2:49190890-49190909 | MS.gene067734:CDS | 45.0% | |
| TTGCTTGGCTTATGTACACC+AGG | - | chr4.2:49190889-49190908 | MS.gene067734:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | - | chr4.2:49190961-49190980 | MS.gene067734:CDS | 45.0% |
| ! | TGATGATGAGGATGAGGTTG+TGG | - | chr4.2:49191508-49191527 | MS.gene067734:CDS | 45.0% |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | - | chr4.2:49190833-49190852 | MS.gene067734:CDS | 45.0% |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | - | chr4.2:49191645-49191664 | MS.gene067734:CDS | 45.0% |
| AAGGGATGTGGTCATAGCCT+CGG | - | chr4.2:49190665-49190684 | MS.gene067734:CDS | 50.0% | |
| AATGGAAAGCGACTGCAACC+CGG | + | chr4.2:49190829-49190848 | None:intergenic | 50.0% | |
| ACTCAGGTGTGGAAAGCAAG+TGG | + | chr4.2:49191549-49191568 | None:intergenic | 50.0% | |
| ATCCCATCTCAAGGCTGCAA+GGG | - | chr4.2:49190647-49190666 | MS.gene067734:CDS | 50.0% | |
| ATCCCTTGCAGCCTTGAGAT+GGG | + | chr4.2:49190652-49190671 | None:intergenic | 50.0% | |
| ATTCGGCTCAACCCCAACAA+TGG | + | chr4.2:49191021-49191040 | None:intergenic | 50.0% | |
| CATCAGCTCAACCATGGATG+TGG | + | chr4.2:49191807-49191826 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | - | chr4.2:49191807-49191826 | MS.gene067734:CDS | 50.0% | |
| CCATTTCTTGCATGTTGCCG+AGG | + | chr4.2:49190685-49190704 | None:intergenic | 50.0% | |
| CCTCGGCAACATGCAAGAAA+TGG | - | chr4.2:49190682-49190701 | MS.gene067734:CDS | 50.0% | |
| CGGCTTCTGCTGTTATTGCT+TGG | - | chr4.2:49190874-49190893 | MS.gene067734:CDS | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | - | chr4.2:49191027-49191046 | MS.gene067734:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | - | chr4.2:49191124-49191143 | MS.gene067734:CDS | 50.0% | |
| TATCCCATCTCAAGGCTGCA+AGG | - | chr4.2:49190646-49190665 | MS.gene067734:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | + | chr4.2:49191813-49191832 | None:intergenic | 50.0% | |
| ! | GACGGGTCGTTGATAAATCG+CGG | + | chr4.2:49190770-49190789 | None:intergenic | 50.0% |
| ! | GATTTGTGGGAGGCATAAGC+TGG | - | chr4.2:49190971-49190990 | MS.gene067734:CDS | 50.0% |
| !! | CATTCACGGTGTTGTTTCCG+AGG | - | chr4.2:49191742-49191761 | MS.gene067734:CDS | 50.0% |
| CATCCCTTGCAGCCTTGAGA+TGG | + | chr4.2:49190653-49190672 | None:intergenic | 55.0% | |
| TCTCAAGGCTGCAAGGGATG+TGG | - | chr4.2:49190653-49190672 | MS.gene067734:CDS | 55.0% | |
| TGTACACCAGGGAGACTCTG+AGG | - | chr4.2:49190901-49190920 | MS.gene067734:CDS | 55.0% | |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | - | chr4.2:49191683-49191702 | MS.gene067734:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | - | chr4.2:49191682-49191701 | MS.gene067734:CDS | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | - | chr4.2:49191684-49191703 | MS.gene067734:CDS | 55.0% |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | - | chr4.2:49191111-49191130 | MS.gene067734:CDS | 55.0% |
| CAACTGCCTCAGAGTCTCCC+TGG | + | chr4.2:49190910-49190929 | None:intergenic | 60.0% | |
| AAGCAGCCCCTCGACCCACT+GGG | + | chr4.2:49191693-49191712 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | + | chr4.2:49191694-49191713 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 49190606 | 49191868 | 49190606 | ID=MS.gene067734 |
| chr4.2 | mRNA | 49190606 | 49191868 | 49190606 | ID=MS.gene067734.t1;Parent=MS.gene067734 |
| chr4.2 | exon | 49190606 | 49191868 | 49190606 | ID=MS.gene067734.t1.exon1;Parent=MS.gene067734.t1 |
| chr4.2 | CDS | 49190606 | 49191868 | 49190606 | ID=cds.MS.gene067734.t1;Parent=MS.gene067734.t1 |
| Gene Sequence |
| Protein sequence |
