Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067815.t1 | XP_003624631.1 | 95.2 | 252 | 6 | 3 | 1 | 252 | 1 | 246 | 7.10E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067815.t1 | A2Q5V9 | 95.2 | 252 | 6 | 3 | 1 | 252 | 1 | 246 | 5.1e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene067815 | 0.827668 | 1.38E-54 | -1.69E-46 |
| MS.gene050508 | MS.gene067815 | 0.832682 | 8.22E-56 | -1.69E-46 |
| MS.gene050605 | MS.gene067815 | 0.806179 | 9.33E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene067815 | 0.80763 | 4.60E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene067815 | 0.81036 | 1.20E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene067815 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene059710 | MS.gene067815 | 0.830564 | 2.74E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067815.t1 | MTR_7g085790 | 95.238 | 252 | 6 | 3 | 1 | 252 | 1 | 246 | 2.09e-176 | 488 |
| MS.gene067815.t1 | MTR_7g085790 | 80.159 | 252 | 5 | 3 | 1 | 252 | 1 | 207 | 1.26e-140 | 396 |
| MS.gene067815.t1 | MTR_6g029250 | 48.413 | 252 | 99 | 8 | 1 | 252 | 1 | 221 | 9.43e-59 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067815.t1 | AT5G18130 | 31.379 | 290 | 145 | 9 | 1 | 252 | 1 | 274 | 1.77e-31 | 119 |
| MS.gene067815.t1 | AT3G03870 | 34.559 | 272 | 146 | 14 | 1 | 252 | 1 | 260 | 1.18e-28 | 111 |
| MS.gene067815.t1 | AT5G18130 | 29.008 | 262 | 133 | 9 | 1 | 225 | 1 | 246 | 7.54e-19 | 84.7 |
| MS.gene067815.t1 | AT3G03870 | 31.120 | 241 | 135 | 13 | 1 | 222 | 1 | 229 | 3.73e-15 | 73.9 |
Find 78 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTTGTTGACATGAAAT+TGG | 0.182807 | 7.1:+19400389 | MS.gene067815:CDS |
| CCTCTACCACTACTAGATTT+TGG | 0.209211 | 7.1:-19400417 | None:intergenic |
| TTCTCCATGTTCTTCATTCT+AGG | 0.255315 | 7.1:-19400483 | None:intergenic |
| GTTGGAGCTATATGTTCTTT+TGG | 0.285385 | 7.1:+19400594 | MS.gene067815:CDS |
| ACAATTTGTGTCTTGTTCTT+TGG | 0.297991 | 7.1:+19400630 | MS.gene067815:CDS |
| CAGTTAAGCTTGCTCCTTCA+TGG | 0.298368 | 7.1:-19402647 | None:intergenic |
| GGAACATGGAAAATTTGTTT+TGG | 0.322740 | 7.1:-19400228 | None:intergenic |
| GAACATGGAGAATGAAAATA+AGG | 0.328452 | 7.1:+19400494 | MS.gene067815:CDS |
| TCTTTCACCAGCCCTTCATT+TGG | 0.338022 | 7.1:-19400282 | None:intergenic |
| ATGATGGGTTCAAATTGAAT+TGG | 0.356134 | 7.1:-19400249 | None:intergenic |
| CTTCCTCTATCTCGGGGACT+TGG | 0.359630 | 7.1:-19400320 | None:intergenic |
| TAATACTACTTTGGTCTTGT+TGG | 0.368197 | 7.1:-19400677 | None:intergenic |
| AACAAGACCAAAGTAGTATT+AGG | 0.368502 | 7.1:+19400679 | MS.gene067815:CDS |
| ATTTGGAACCTTGTCAATGA+TGG | 0.382204 | 7.1:-19400265 | None:intergenic |
| TTGTTATGTGGCGGTGGCTC+GGG | 0.387828 | 7.1:+19402714 | MS.gene067815:CDS |
| AGCAGAGCTCACATAACTTA+TGG | 0.392361 | 7.1:+19401792 | MS.gene067815:CDS |
| TGGGTGATCCTTTCTGATGA+TGG | 0.393897 | 7.1:+19400081 | MS.gene067815:CDS |
| AGATCTTTGGTGAGTGAGAA+AGG | 0.409671 | 7.1:+19402792 | MS.gene067815:CDS |
| GGTGGGATGCACCATGAGGG+TGG | 0.411043 | 7.1:+19402617 | MS.gene067815:CDS |
| ATGGCTGCTCCCCACCCTCA+TGG | 0.413966 | 7.1:-19402628 | None:intergenic |
| CGGGTGGTGGTCGCATCGGC+GGG | 0.414036 | 7.1:+19402733 | MS.gene067815:CDS |
| TTGGTGAGTGAGAAAGGAAA+TGG | 0.421454 | 7.1:+19402798 | MS.gene067815:CDS |
| TGTGGCGGTGGCTCGGGTGG+TGG | 0.423600 | 7.1:+19402720 | MS.gene067815:CDS |
| TTGATCAGCTTCCTCTATCT+CGG | 0.423812 | 7.1:-19400328 | None:intergenic |
| GATCTTTCTTCCACACCATC+AGG | 0.427831 | 7.1:-19402774 | None:intergenic |
| ATTGTTATGTGGCGGTGGCT+CGG | 0.447854 | 7.1:+19402713 | MS.gene067815:CDS |
| TCTTGAACCTAATACTACTT+TGG | 0.449158 | 7.1:-19400686 | None:intergenic |
| TCGGGTGGTGGTCGCATCGG+CGG | 0.450995 | 7.1:+19402732 | MS.gene067815:CDS |
| TGATCAGCTTCCTCTATCTC+GGG | 0.452128 | 7.1:-19400327 | None:intergenic |
| AATCCAAGTCCCCGAGATAG+AGG | 0.452399 | 7.1:+19400317 | MS.gene067815:CDS |
| TTGTGGAAGTGGAGCTTGAC+AGG | 0.453604 | 7.1:+19400570 | MS.gene067815:CDS |
| TGGGATGCACCATGAGGGTG+GGG | 0.454083 | 7.1:+19402619 | MS.gene067815:CDS |
| GAAGCATTTGCAGCAGTAAG+AGG | 0.455785 | 7.1:+19401759 | MS.gene067815:CDS |
| GTGGGATGCACCATGAGGGT+GGG | 0.458733 | 7.1:+19402618 | MS.gene067815:CDS |
| ATTGACAAGGTTCCAAATGA+AGG | 0.461067 | 7.1:+19400270 | MS.gene067815:CDS |
| GGCGGGTGGGATGCACCATG+AGG | 0.462517 | 7.1:+19402613 | MS.gene067815:CDS |
| GGCTCGGGTGGTGGTCGCAT+CGG | 0.464798 | 7.1:+19402729 | MS.gene067815:CDS |
| GTTATGTGAGCTCTGCTCAA+TGG | 0.473473 | 7.1:-19401786 | None:intergenic |
| TTTGGAACCTTGTCAATGAT+GGG | 0.478486 | 7.1:-19400264 | None:intergenic |
| AGTGAGAAAGGAAATGGAAA+AGG | 0.485775 | 7.1:+19402804 | MS.gene067815:CDS |
| CCAAAATCTAGTAGTGGTAG+AGG | 0.509925 | 7.1:+19400417 | MS.gene067815:CDS |
| CAAGGTTCCAAATGAAGGGC+TGG | 0.510901 | 7.1:+19400275 | MS.gene067815:CDS |
| AAGGAAGGAGAGGACATGAA+TGG | 0.517989 | 7.1:+19400537 | MS.gene067815:CDS |
| AAGTGGAGCTTGACAGGAGT+TGG | 0.528199 | 7.1:+19400576 | MS.gene067815:CDS |
| ATCTCCATGTCTGCATCAAG+TGG | 0.532042 | 7.1:-19400450 | None:intergenic |
| GAGACAAACATGACAACCAT+TGG | 0.532984 | 7.1:+19402690 | MS.gene067815:CDS |
| TTATGTGGCGGTGGCTCGGG+TGG | 0.535633 | 7.1:+19402717 | MS.gene067815:CDS |
| CATCGGCGGGAAGGAAAGCT+TGG | 0.535792 | 7.1:+19402746 | MS.gene067815:CDS |
| TGGTGGTCGCATCGGCGGGA+AGG | 0.542326 | 7.1:+19402737 | MS.gene067815:CDS |
| CGGCGGGAAGGAAAGCTTGG+CGG | 0.547963 | 7.1:+19402749 | MS.gene067815:CDS |
| TGGTGTGGAAGAAAGATCTT+TGG | 0.548937 | 7.1:+19402779 | MS.gene067815:CDS |
| TTCTCCACTTGATGCAGACA+TGG | 0.549790 | 7.1:+19400446 | MS.gene067815:CDS |
| GAAAGCTTGGCGGCACCTGA+TGG | 0.556039 | 7.1:+19402759 | MS.gene067815:CDS |
| GTGAGAAAGGAAATGGAAAA+GGG | 0.560335 | 7.1:+19402805 | MS.gene067815:CDS |
| AGGGTGGGGAGCAGCCATGA+AGG | 0.563713 | 7.1:+19402633 | MS.gene067815:CDS |
| ATGTACTATGATGAGAAGGA+AGG | 0.568648 | 7.1:+19400522 | MS.gene067815:CDS |
| ATTGGATTGTTATGTGGCGG+TGG | 0.574782 | 7.1:+19402708 | MS.gene067815:CDS |
| ACAACCATTGGATTGTTATG+TGG | 0.583481 | 7.1:+19402702 | MS.gene067815:CDS |
| GCGGGTGGGATGCACCATGA+GGG | 0.584184 | 7.1:+19402614 | MS.gene067815:CDS |
| TTGACAAGGTTCCAAATGAA+GGG | 0.592489 | 7.1:+19400271 | MS.gene067815:CDS |
| GTTCAAATTGAATTGGAACA+TGG | 0.592625 | 7.1:-19400242 | None:intergenic |
| AAACTCACTCGTCTTTGACA+AGG | 0.596384 | 7.1:+19400146 | MS.gene067815:CDS |
| TGTTCTTTGGAAGTCAACAA+AGG | 0.599769 | 7.1:+19400643 | MS.gene067815:CDS |
| TGTTATGTACTATGATGAGA+AGG | 0.601438 | 7.1:+19400518 | MS.gene067815:CDS |
| GAAGGAGAGGACATGAATGG+TGG | 0.601946 | 7.1:+19400540 | MS.gene067815:CDS |
| CAAGATCTACACTGATGACA+AGG | 0.613940 | 7.1:+19400704 | MS.gene067815:CDS |
| ATTTGAACCCATCATTGACA+AGG | 0.620426 | 7.1:+19400257 | MS.gene067815:CDS |
| AAAGAACAAGACACAAATTG+TGG | 0.626637 | 7.1:-19400628 | None:intergenic |
| GATCAGCTTCCTCTATCTCG+GGG | 0.628424 | 7.1:-19400326 | None:intergenic |
| CTATGATGAGAAGGAAGGAG+AGG | 0.636243 | 7.1:+19400527 | MS.gene067815:CDS |
| CTTGGCGGCACCTGATGGTG+TGG | 0.640060 | 7.1:+19402764 | MS.gene067815:CDS |
| ATTGCAGAGGGTTAAGCAAG+TGG | 0.641403 | 7.1:+19401713 | MS.gene067815:intron |
| ATCTCCTAGAATGAAGAACA+TGG | 0.641567 | 7.1:+19400479 | MS.gene067815:CDS |
| GAGTCACCAAAATCTAGTAG+TGG | 0.643722 | 7.1:+19400411 | MS.gene067815:CDS |
| ACCGCCACATAACAATCCAA+TGG | 0.660322 | 7.1:-19402706 | None:intergenic |
| ACCATTGGATTGTTATGTGG+CGG | 0.673231 | 7.1:+19402705 | MS.gene067815:CDS |
| GAAGATGGATATCAATGAGT+GGG | 0.674672 | 7.1:+19400062 | None:intergenic |
| TGAAGATGGATATCAATGAG+TGG | 0.698977 | 7.1:+19400061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr7.1:19400962-19400981 | MS.gene067815:intron | 10.0% |
| !! | CAATTATAAATAATTTATGA+GGG | + | chr7.1:19401383-19401402 | MS.gene067815:intron | 10.0% |
| !! | CTTGTTAATAATTTATAATT+AGG | - | chr7.1:19401458-19401477 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr7.1:19400961-19400980 | MS.gene067815:intron | 10.0% |
| !! | TCAATTATAAATAATTTATG+AGG | + | chr7.1:19401382-19401401 | MS.gene067815:intron | 10.0% |
| !!! | ATATATGAGAATTTTAAAAT+AGG | + | chr7.1:19401219-19401238 | MS.gene067815:intron | 10.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr7.1:19400963-19400982 | MS.gene067815:intron | 15.0% |
| !! | AGTATTAATTAGAGTTATAA+AGG | + | chr7.1:19401021-19401040 | MS.gene067815:intron | 15.0% |
| !! | GTATTAATTAGAGTTATAAA+GGG | + | chr7.1:19401022-19401041 | MS.gene067815:intron | 15.0% |
| !! | TATTAATTAGAGTTATAAAG+GGG | + | chr7.1:19401023-19401042 | MS.gene067815:intron | 15.0% |
| !!! | TCTTTGTTTATTTTGTTTTA+AGG | - | chr7.1:19402349-19402368 | None:intergenic | 15.0% |
| !!! | TTTAGAGATTTAAAAAGTAT+AGG | + | chr7.1:19401505-19401524 | MS.gene067815:intron | 15.0% |
| !! | AAAAGTGGAATATATTGAAT+TGG | + | chr7.1:19401047-19401066 | MS.gene067815:intron | 20.0% |
| !! | AAACAAGAAACAATACAAAT+AGG | + | chr7.1:19401874-19401893 | MS.gene067815:intron | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr7.1:19400986-19401005 | MS.gene067815:intron | 20.0% |
| !! | AATAATGTCATAGAAAAAAG+GGG | + | chr7.1:19401565-19401584 | MS.gene067815:intron | 20.0% |
| !! | ACAATAATGTCATAGAAAAA+AGG | + | chr7.1:19401563-19401582 | MS.gene067815:intron | 20.0% |
| !! | ACACTAGTATTAATTGAATA+TGG | - | chr7.1:19400887-19400906 | None:intergenic | 20.0% |
| !! | CAATAATGTCATAGAAAAAA+GGG | + | chr7.1:19401564-19401583 | MS.gene067815:intron | 20.0% |
| !! | TTACAAATATTTAAATGTCC+AGG | - | chr7.1:19401340-19401359 | None:intergenic | 20.0% |
| !! | TTATTCTTGAATAGTCAAAA+TGG | + | chr7.1:19401624-19401643 | MS.gene067815:intron | 20.0% |
| !!! | GACACTTTTTTTTTAGTAAA+TGG | + | chr7.1:19401117-19401136 | MS.gene067815:intron | 20.0% |
| !!! | TTAAAAACCTTTTAGTTTAG+AGG | + | chr7.1:19401432-19401451 | MS.gene067815:intron | 20.0% |
| !!! | TTTTAATGGTTCAATATCAA+TGG | - | chr7.1:19400205-19400224 | None:intergenic | 20.0% |
| ! | AAAATATTGTTTGAGCATCT+TGG | + | chr7.1:19401193-19401212 | MS.gene067815:intron | 25.0% |
| ! | ATAATGTCATAGAAAAAAGG+GGG | + | chr7.1:19401566-19401585 | MS.gene067815:intron | 25.0% |
| ! | TAGAATATCATATAGATCTC+AGG | - | chr7.1:19402572-19402591 | None:intergenic | 25.0% |
| ! | TCTATATGATATTCTAACCA+TGG | + | chr7.1:19402576-19402595 | MS.gene067815:intron | 25.0% |
| !! | CTCTTACTATGTTTTATCTA+TGG | + | chr7.1:19400826-19400845 | MS.gene067815:intron | 25.0% |
| !! | GAGATTTAAAAAGTATAGGA+TGG | + | chr7.1:19401509-19401528 | MS.gene067815:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr7.1:19401094-19401113 | MS.gene067815:intron | 25.0% |
| !!! | AATGGTTTTTGTTGATTTTG+GGG | - | chr7.1:19400187-19400206 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTGGCACTTTTAA+TGG | - | chr7.1:19400219-19400238 | None:intergenic | 25.0% |
| !!! | CAAATTTGTTGACATGAAAT+TGG | + | chr7.1:19400389-19400408 | MS.gene067815:CDS | 25.0% |
| !!! | CAATGGTTTTTGTTGATTTT+GGG | - | chr7.1:19400188-19400207 | None:intergenic | 25.0% |
| !!! | TCAATGGTTTTTGTTGATTT+TGG | - | chr7.1:19400189-19400208 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr7.1:19401095-19401114 | MS.gene067815:intron | 25.0% |
| !!! | TTGTTTTAAGTATGTCTTCA+TGG | - | chr7.1:19402484-19402503 | None:intergenic | 25.0% |
| AAAGAACAAGACACAAATTG+TGG | - | chr7.1:19400631-19400650 | None:intergenic | 30.0% | |
| AACAAGACCAAAGTAGTATT+AGG | + | chr7.1:19400679-19400698 | MS.gene067815:CDS | 30.0% | |
| AAGAGTTGACATAAAGATCT+TGG | - | chr7.1:19400811-19400830 | None:intergenic | 30.0% | |
| AATTAGGCCTCTAAACTAAA+AGG | - | chr7.1:19401442-19401461 | None:intergenic | 30.0% | |
| ATATGATATTCTAACCATGG+TGG | + | chr7.1:19402579-19402598 | MS.gene067815:intron | 30.0% | |
| ATTATTGTCCATCAAATGAC+AGG | - | chr7.1:19401551-19401570 | None:intergenic | 30.0% | |
| ATTCAAAGCTGTTTACTTCA+GGG | - | chr7.1:19401312-19401331 | None:intergenic | 30.0% | |
| GAACATGGAGAATGAAAATA+AGG | + | chr7.1:19400494-19400513 | MS.gene067815:CDS | 30.0% | |
| GTTCAAATTGAATTGGAACA+TGG | - | chr7.1:19400245-19400264 | None:intergenic | 30.0% | |
| TCAAAGAAATTATCCGTAAC+TGG | - | chr7.1:19402116-19402135 | None:intergenic | 30.0% | |
| TCTATGGATAAGACTTGAAT+CGG | + | chr7.1:19400842-19400861 | MS.gene067815:intron | 30.0% | |
| TCTCAAACATCTGGAAAAAT+TGG | - | chr7.1:19402181-19402200 | None:intergenic | 30.0% | |
| TCTTGAACCTAATACTACTT+TGG | - | chr7.1:19400689-19400708 | None:intergenic | 30.0% | |
| TGCAATCACAATCACAATTA+AGG | - | chr7.1:19401699-19401718 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr7.1:19400970-19400989 | MS.gene067815:intron | 30.0% | |
| TGTTATGTACTATGATGAGA+AGG | + | chr7.1:19400518-19400537 | MS.gene067815:CDS | 30.0% | |
| TGTTCTACTGCTTTAATGTT+TGG | - | chr7.1:19402533-19402552 | None:intergenic | 30.0% | |
| TTGAATAGTCAAAATGGATC+AGG | + | chr7.1:19401630-19401649 | MS.gene067815:intron | 30.0% | |
| ! | ACAATTTGTGTCTTGTTCTT+TGG | + | chr7.1:19400630-19400649 | MS.gene067815:CDS | 30.0% |
| ! | TAAAAAGTATAGGATGGTGA+TGG | + | chr7.1:19401515-19401534 | MS.gene067815:intron | 30.0% |
| !! | ATGATGGGTTCAAATTGAAT+TGG | - | chr7.1:19400252-19400271 | None:intergenic | 30.0% |
| !! | GGAACATGGAAAATTTGTTT+TGG | - | chr7.1:19400231-19400250 | None:intergenic | 30.0% |
| !! | TAATACTACTTTGGTCTTGT+TGG | - | chr7.1:19400680-19400699 | None:intergenic | 30.0% |
| !! | TGATCTTTGATTTTCGACAA+TGG | - | chr7.1:19401930-19401949 | None:intergenic | 30.0% |
| !! | TTTGATTTTCGACAATGGAT+GGG | - | chr7.1:19401925-19401944 | None:intergenic | 30.0% |
| !!! | TCTTTTTTCCAATCCAGTTA+CGG | + | chr7.1:19402100-19402119 | MS.gene067815:intron | 30.0% |
| AACAAATCTTTGCGCAGAAT+CGG | + | chr7.1:19400780-19400799 | MS.gene067815:intron | 35.0% | |
| AATAGAGAGGTTGTTGCAAT+GGG | + | chr7.1:19402212-19402231 | MS.gene067815:intron | 35.0% | |
| AATTGTGATTGTGATTGCAG+AGG | + | chr7.1:19401700-19401719 | MS.gene067815:intron | 35.0% | |
| ACAAAGTAGCTAGTGTTTGT+TGG | - | chr7.1:19402275-19402294 | None:intergenic | 35.0% | |
| ACAACCATTGGATTGTTATG+TGG | + | chr7.1:19402702-19402721 | MS.gene067815:CDS | 35.0% | |
| AGTAAATGGCTCAGTTAATC+CGG | + | chr7.1:19401131-19401150 | MS.gene067815:intron | 35.0% | |
| AGTGAGAAAGGAAATGGAAA+AGG | + | chr7.1:19402804-19402823 | MS.gene067815:CDS | 35.0% | |
| ATAGGTAGAGACACTTGAAT+TGG | + | chr7.1:19401892-19401911 | MS.gene067815:intron | 35.0% | |
| ATCTCCTAGAATGAAGAACA+TGG | + | chr7.1:19400479-19400498 | MS.gene067815:CDS | 35.0% | |
| ATGTACTATGATGAGAAGGA+AGG | + | chr7.1:19400522-19400541 | MS.gene067815:CDS | 35.0% | |
| ATTGACAAGGTTCCAAATGA+AGG | + | chr7.1:19400270-19400289 | MS.gene067815:CDS | 35.0% | |
| ATTGTGATTGTGATTGCAGA+GGG | + | chr7.1:19401701-19401720 | MS.gene067815:intron | 35.0% | |
| ATTTGAACCCATCATTGACA+AGG | + | chr7.1:19400257-19400276 | MS.gene067815:CDS | 35.0% | |
| CAAAAAAGCCATCATCAGAA+AGG | - | chr7.1:19400092-19400111 | None:intergenic | 35.0% | |
| CCAAAAGACATAAACCTCTT+GGG | + | chr7.1:19402296-19402315 | MS.gene067815:intron | 35.0% | |
| GAAATTATCCGTAACTGGAT+TGG | - | chr7.1:19402111-19402130 | None:intergenic | 35.0% | |
| GAGTTATAAAGGGGAAAAAG+TGG | + | chr7.1:19401032-19401051 | MS.gene067815:intron | 35.0% | |
| GATTCAAAGCTGTTTACTTC+AGG | - | chr7.1:19401313-19401332 | None:intergenic | 35.0% | |
| GGATCTAAGAATTTGTCCTT+GGG | - | chr7.1:19402417-19402436 | None:intergenic | 35.0% | |
| GTGAGAAAGGAAATGGAAAA+GGG | + | chr7.1:19402805-19402824 | MS.gene067815:CDS | 35.0% | |
| TAGGTAGAGACACTTGAATT+GGG | + | chr7.1:19401893-19401912 | MS.gene067815:intron | 35.0% | |
| TCATATAGATCTCAGGTTTG+AGG | - | chr7.1:19402565-19402584 | None:intergenic | 35.0% | |
| TCCAAAAGACATAAACCTCT+TGG | + | chr7.1:19402295-19402314 | MS.gene067815:intron | 35.0% | |
| TCCTGAATTAATTGAGCTCT+TGG | + | chr7.1:19400922-19400941 | MS.gene067815:intron | 35.0% | |
| TGGATCTAAGAATTTGTCCT+TGG | - | chr7.1:19402418-19402437 | None:intergenic | 35.0% | |
| TTCTCCATGTTCTTCATTCT+AGG | - | chr7.1:19400486-19400505 | None:intergenic | 35.0% | |
| TTGACAAGGTTCCAAATGAA+GGG | + | chr7.1:19400271-19400290 | MS.gene067815:CDS | 35.0% | |
| ! | AAAAAAGGGGGTGATTGTTT+TGG | + | chr7.1:19401578-19401597 | MS.gene067815:intron | 35.0% |
| ! | AGCTTAACTGTTTTCGGATT+TGG | + | chr7.1:19402660-19402679 | MS.gene067815:CDS | 35.0% |
| ! | ATTTGGAACCTTGTCAATGA+TGG | - | chr7.1:19400268-19400287 | None:intergenic | 35.0% |
| ! | GAGAAATTCCTGTCATTTGA+TGG | + | chr7.1:19401540-19401559 | MS.gene067815:intron | 35.0% |
| ! | GCTTAACTGTTTTCGGATTT+GGG | + | chr7.1:19402661-19402680 | MS.gene067815:CDS | 35.0% |
| ! | GTTGGAGCTATATGTTCTTT+TGG | + | chr7.1:19400594-19400613 | MS.gene067815:CDS | 35.0% |
| ! | TGTTCTTTGGAAGTCAACAA+AGG | + | chr7.1:19400643-19400662 | MS.gene067815:CDS | 35.0% |
| ! | TTGATTTTCGACAATGGATG+GGG | - | chr7.1:19401924-19401943 | None:intergenic | 35.0% |
| ! | TTTGGAACCTTGTCAATGAT+GGG | - | chr7.1:19400267-19400286 | None:intergenic | 35.0% |
| ! | TTTTGACAAAAAGACCCAAG+AGG | - | chr7.1:19402313-19402332 | None:intergenic | 35.0% |
| !! | CTTTGATTTTCGACAATGGA+TGG | - | chr7.1:19401926-19401945 | None:intergenic | 35.0% |
| !! | TGATGTTGGTTTGTTGTTCT+TGG | - | chr7.1:19402023-19402042 | None:intergenic | 35.0% |
| !! | TTGGTTTGGTTATGTCACTT+TGG | - | chr7.1:19402004-19402023 | None:intergenic | 35.0% |
| !! | TTGGTTTGTTGTTCTTGGTT+TGG | - | chr7.1:19402018-19402037 | None:intergenic | 35.0% |
| !!! | TCTGATGATGGCTTTTTTGA+TGG | + | chr7.1:19400093-19400112 | MS.gene067815:CDS | 35.0% |
| !!! | TGAATGGTGGTTTTAACTTG+TGG | + | chr7.1:19400553-19400572 | MS.gene067815:CDS | 35.0% |
| AAACTCACTCGTCTTTGACA+AGG | + | chr7.1:19400146-19400165 | MS.gene067815:CDS | 40.0% | |
| ACCATTGGATTGTTATGTGG+CGG | + | chr7.1:19402705-19402724 | MS.gene067815:CDS | 40.0% | |
| AGAGCTCACATAACTTATGG+TGG | + | chr7.1:19401795-19401814 | MS.gene067815:intron | 40.0% | |
| AGATCTTTGGTGAGTGAGAA+AGG | + | chr7.1:19402792-19402811 | MS.gene067815:CDS | 40.0% | |
| AGCAGAGCTCACATAACTTA+TGG | + | chr7.1:19401792-19401811 | MS.gene067815:CDS | 40.0% | |
| ATAGAGAGGTTGTTGCAATG+GGG | + | chr7.1:19402213-19402232 | MS.gene067815:intron | 40.0% | |
| ATTCTCTTCCCTATATTGCC+AGG | - | chr7.1:19402074-19402093 | None:intergenic | 40.0% | |
| CAAGATCTACACTGATGACA+AGG | + | chr7.1:19400704-19400723 | MS.gene067815:CDS | 40.0% | |
| CATTCAACCTCTTACAAACC+CGG | + | chr7.1:19402046-19402065 | MS.gene067815:intron | 40.0% | |
| CCAAAATCTAGTAGTGGTAG+AGG | + | chr7.1:19400417-19400436 | MS.gene067815:CDS | 40.0% | |
| GAATAGAGAGGTTGTTGCAA+TGG | + | chr7.1:19402211-19402230 | MS.gene067815:intron | 40.0% | |
| GAGACAAACATGACAACCAT+TGG | + | chr7.1:19402690-19402709 | MS.gene067815:CDS | 40.0% | |
| GAGGTTGAATGAACTGATGT+TGG | - | chr7.1:19402037-19402056 | None:intergenic | 40.0% | |
| GAGTCACCAAAATCTAGTAG+TGG | + | chr7.1:19400411-19400430 | MS.gene067815:CDS | 40.0% | |
| GCCAAGAGCTCAATTAATTC+AGG | - | chr7.1:19400926-19400945 | None:intergenic | 40.0% | |
| GTAAATGGCTCAGTTAATCC+GGG | + | chr7.1:19401132-19401151 | MS.gene067815:intron | 40.0% | |
| TCGCACATTTCGACTATCAT+TGG | + | chr7.1:19402143-19402162 | MS.gene067815:intron | 40.0% | |
| TGGTGTGGAAGAAAGATCTT+TGG | + | chr7.1:19402779-19402798 | MS.gene067815:CDS | 40.0% | |
| TTGATCAGCTTCCTCTATCT+CGG | - | chr7.1:19400331-19400350 | None:intergenic | 40.0% | |
| TTGGCAATCCATAGAGACTA+AGG | - | chr7.1:19402256-19402275 | None:intergenic | 40.0% | |
| TTGGTGAGTGAGAAAGGAAA+TGG | + | chr7.1:19402798-19402817 | MS.gene067815:CDS | 40.0% | |
| ! | AACTGTTTTCGGATTTGGGA+TGG | + | chr7.1:19402665-19402684 | MS.gene067815:CDS | 40.0% |
| ! | ACCAGCAAGTTAAGCTCTTT+TGG | + | chr7.1:19402442-19402461 | MS.gene067815:intron | 40.0% |
| ! | CCAGCAAGTTAAGCTCTTTT+GGG | + | chr7.1:19402443-19402462 | MS.gene067815:intron | 40.0% |
| ! | CCCAAGAGGTTTATGTCTTT+TGG | - | chr7.1:19402299-19402318 | None:intergenic | 40.0% |
| ! | CCTCTACCACTACTAGATTT+TGG | - | chr7.1:19400420-19400439 | None:intergenic | 40.0% |
| ! | CTGGATTGGAAAAAAGACTG+TGG | - | chr7.1:19402097-19402116 | None:intergenic | 40.0% |
| ! | GGAGCAAGCTTAACTGTTTT+CGG | + | chr7.1:19402654-19402673 | MS.gene067815:CDS | 40.0% |
| ! | TTTTCCAGATGTTTGAGAGC+TGG | + | chr7.1:19402183-19402202 | MS.gene067815:intron | 40.0% |
| !! | AACAGCTTTGAATCAGATCC+TGG | + | chr7.1:19401319-19401338 | MS.gene067815:intron | 40.0% |
| !! | AGCTTAACTTGCTGGTTGTT+TGG | - | chr7.1:19402438-19402457 | None:intergenic | 40.0% |
| !!! | GGTTTTTGTTGATTTTGGGG+AGG | - | chr7.1:19400184-19400203 | None:intergenic | 40.0% |
| !!! | GTGGTTTTAACTTGTGGAAG+TGG | + | chr7.1:19400559-19400578 | MS.gene067815:CDS | 40.0% |
| !!! | TCTAACCATGGTGGTTTTGA+TGG | + | chr7.1:19402588-19402607 | MS.gene067815:intron | 40.0% |
| AAGGAAGGAGAGGACATGAA+TGG | + | chr7.1:19400537-19400556 | MS.gene067815:CDS | 45.0% | |
| ACCGCCACATAACAATCCAA+TGG | - | chr7.1:19402709-19402728 | None:intergenic | 45.0% | |
| ATCTCCATGTCTGCATCAAG+TGG | - | chr7.1:19400453-19400472 | None:intergenic | 45.0% | |
| ATTGCAGAGGGTTAAGCAAG+TGG | + | chr7.1:19401713-19401732 | MS.gene067815:intron | 45.0% | |
| ATTGGATTGTTATGTGGCGG+TGG | + | chr7.1:19402708-19402727 | MS.gene067815:CDS | 45.0% | |
| CTATGATGAGAAGGAAGGAG+AGG | + | chr7.1:19400527-19400546 | MS.gene067815:CDS | 45.0% | |
| GATCTTTCTTCCACACCATC+AGG | - | chr7.1:19402777-19402796 | None:intergenic | 45.0% | |
| GGAAGCTTCCTTAGTCTCTA+TGG | + | chr7.1:19402245-19402264 | MS.gene067815:intron | 45.0% | |
| GTTATGTGAGCTCTGCTCAA+TGG | - | chr7.1:19401789-19401808 | None:intergenic | 45.0% | |
| TAGAGAGGTTGTTGCAATGG+GGG | + | chr7.1:19402214-19402233 | MS.gene067815:intron | 45.0% | |
| TCTTTCACCAGCCCTTCATT+TGG | - | chr7.1:19400285-19400304 | None:intergenic | 45.0% | |
| TGATCAGCTTCCTCTATCTC+GGG | - | chr7.1:19400330-19400349 | None:intergenic | 45.0% | |
| TGGGTGATCCTTTCTGATGA+TGG | + | chr7.1:19400081-19400100 | MS.gene067815:CDS | 45.0% | |
| TTCCCTATATTGCCAGGTTC+CGG | - | chr7.1:19402068-19402087 | None:intergenic | 45.0% | |
| TTCTCCACTTGATGCAGACA+TGG | + | chr7.1:19400446-19400465 | MS.gene067815:CDS | 45.0% | |
| ! | CAGTTAAGCTTGCTCCTTCA+TGG | - | chr7.1:19402650-19402669 | None:intergenic | 45.0% |
| ! | GAAGCATTTGCAGCAGTAAG+AGG | + | chr7.1:19401759-19401778 | MS.gene067815:CDS | 45.0% |
| !! | CCCAAAAGAGCTTAACTTGC+TGG | - | chr7.1:19402446-19402465 | None:intergenic | 45.0% |
| !! | TGTTTTCGGATTTGGGATGG+AGG | + | chr7.1:19402668-19402687 | MS.gene067815:CDS | 45.0% |
| !!! | AACCATGGTGGTTTTGATGG+AGG | + | chr7.1:19402591-19402610 | MS.gene067815:intron | 45.0% |
| !!! | ACCATGGTGGTTTTGATGGA+GGG | + | chr7.1:19402592-19402611 | MS.gene067815:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+CGG | + | chr7.1:19401827-19401846 | MS.gene067815:intron | 5.0% |
| AAATACTACTCCCTCCCTCC+CGG | - | chr7.1:19401153-19401172 | None:intergenic | 50.0% | |
| AACCCGGAACCTGGCAATAT+AGG | + | chr7.1:19402062-19402081 | MS.gene067815:intron | 50.0% | |
| AAGTGGAGCTTGACAGGAGT+TGG | + | chr7.1:19400576-19400595 | MS.gene067815:CDS | 50.0% | |
| AATCCAAGTCCCCGAGATAG+AGG | + | chr7.1:19400317-19400336 | MS.gene067815:CDS | 50.0% | |
| AATGGCTCAGTTAATCCGGG+AGG | + | chr7.1:19401135-19401154 | MS.gene067815:intron | 50.0% | |
| ACCCGGAACCTGGCAATATA+GGG | + | chr7.1:19402063-19402082 | MS.gene067815:intron | 50.0% | |
| AGAGACTAAGGAAGCTTCCG+AGG | - | chr7.1:19402244-19402263 | None:intergenic | 50.0% | |
| ATGGCTCAGTTAATCCGGGA+GGG | + | chr7.1:19401136-19401155 | MS.gene067815:intron | 50.0% | |
| ATTGTTATGTGGCGGTGGCT+CGG | + | chr7.1:19402713-19402732 | MS.gene067815:CDS | 50.0% | |
| CAAGGTTCCAAATGAAGGGC+TGG | + | chr7.1:19400275-19400294 | MS.gene067815:CDS | 50.0% | |
| GAAGGAGAGGACATGAATGG+TGG | + | chr7.1:19400540-19400559 | MS.gene067815:CDS | 50.0% | |
| GAATTTGTCCTTGGGCGCTT+CGG | - | chr7.1:19402409-19402428 | None:intergenic | 50.0% | |
| GATCAGCTTCCTCTATCTCG+GGG | - | chr7.1:19400329-19400348 | None:intergenic | 50.0% | |
| TCCACCAGCTCTCAAACATC+TGG | - | chr7.1:19402190-19402209 | None:intergenic | 50.0% | |
| TCCAGATGTTTGAGAGCTGG+TGG | + | chr7.1:19402186-19402205 | MS.gene067815:intron | 50.0% | |
| TCCCTATATTGCCAGGTTCC+GGG | - | chr7.1:19402067-19402086 | None:intergenic | 50.0% | |
| TCGGATCTGATTTCTGCTGC+TGG | - | chr7.1:19402390-19402409 | None:intergenic | 50.0% | |
| TTGTGGAAGTGGAGCTTGAC+AGG | + | chr7.1:19400570-19400589 | MS.gene067815:CDS | 50.0% | |
| ! | GAGCTGGTGGATGAATAGAG+AGG | + | chr7.1:19402199-19402218 | MS.gene067815:intron | 50.0% |
| !!! | ATGGTGGTTTTGATGGAGGG+CGG | + | chr7.1:19402595-19402614 | MS.gene067815:intron | 50.0% |
| ACTAAGGAAGCTTCCGAGGC+TGG | - | chr7.1:19402240-19402259 | None:intergenic | 55.0% | |
| CCAGGTTCCGGGTTTGTAAG+AGG | - | chr7.1:19402056-19402075 | None:intergenic | 55.0% | |
| CCTCTTACAAACCCGGAACC+TGG | + | chr7.1:19402053-19402072 | MS.gene067815:intron | 55.0% | |
| CTCAGTTAATCCGGGAGGGA+GGG | + | chr7.1:19401140-19401159 | MS.gene067815:intron | 55.0% | |
| CTTCCTCTATCTCGGGGACT+TGG | - | chr7.1:19400323-19400342 | None:intergenic | 55.0% | |
| GCCCTCCATCAAAACCACCA+TGG | - | chr7.1:19402596-19402615 | None:intergenic | 55.0% | |
| TTGTTATGTGGCGGTGGCTC+GGG | + | chr7.1:19402714-19402733 | MS.gene067815:CDS | 55.0% | |
| ! | AATCAGATCCGAAGCGCCCA+AGG | + | chr7.1:19402398-19402417 | MS.gene067815:intron | 55.0% |
| !!! | TGGTGGTTTTGATGGAGGGC+GGG | + | chr7.1:19402596-19402615 | MS.gene067815:intron | 55.0% |
| CATCGGCGGGAAGGAAAGCT+TGG | + | chr7.1:19402746-19402765 | MS.gene067815:CDS | 60.0% | |
| GAAAGCTTGGCGGCACCTGA+TGG | + | chr7.1:19402759-19402778 | MS.gene067815:CDS | 60.0% | |
| GCTCAGTTAATCCGGGAGGG+AGG | + | chr7.1:19401139-19401158 | MS.gene067815:intron | 60.0% | |
| GTGGGATGCACCATGAGGGT+GGG | + | chr7.1:19402618-19402637 | MS.gene067815:CDS | 60.0% | |
| TGGGATGCACCATGAGGGTG+GGG | + | chr7.1:19402619-19402638 | MS.gene067815:CDS | 60.0% | |
| !! | GGTTTTGATGGAGGGCGGGT+GGG | + | chr7.1:19402600-19402619 | MS.gene067815:intron | 60.0% |
| !!! | TGGTTTTGATGGAGGGCGGG+TGG | + | chr7.1:19402599-19402618 | MS.gene067815:intron | 60.0% |
| AGGGTGGGGAGCAGCCATGA+AGG | + | chr7.1:19402633-19402652 | MS.gene067815:CDS | 65.0% | |
| ATGGCTGCTCCCCACCCTCA+TGG | - | chr7.1:19402631-19402650 | None:intergenic | 65.0% | |
| CGGCGGGAAGGAAAGCTTGG+CGG | + | chr7.1:19402749-19402768 | MS.gene067815:CDS | 65.0% | |
| GCGGGTGGGATGCACCATGA+GGG | + | chr7.1:19402614-19402633 | MS.gene067815:CDS | 65.0% | |
| GGTGGGATGCACCATGAGGG+TGG | + | chr7.1:19402617-19402636 | MS.gene067815:CDS | 65.0% | |
| GTTGCAATGGGGGCCAGCCT+CGG | + | chr7.1:19402224-19402243 | MS.gene067815:intron | 65.0% | |
| ! | CTTGGCGGCACCTGATGGTG+TGG | + | chr7.1:19402764-19402783 | MS.gene067815:CDS | 65.0% |
| ! | TTATGTGGCGGTGGCTCGGG+TGG | + | chr7.1:19402717-19402736 | MS.gene067815:CDS | 65.0% |
| GGCGGGTGGGATGCACCATG+AGG | + | chr7.1:19402613-19402632 | MS.gene067815:CDS | 70.0% | |
| ! | GGCTCGGGTGGTGGTCGCAT+CGG | + | chr7.1:19402729-19402748 | MS.gene067815:CDS | 70.0% |
| ! | TCGGGTGGTGGTCGCATCGG+CGG | + | chr7.1:19402732-19402751 | MS.gene067815:CDS | 70.0% |
| ! | TGGTGGTCGCATCGGCGGGA+AGG | + | chr7.1:19402737-19402756 | MS.gene067815:CDS | 70.0% |
| ! | CGGGTGGTGGTCGCATCGGC+GGG | + | chr7.1:19402733-19402752 | MS.gene067815:CDS | 75.0% |
| ! | TGTGGCGGTGGCTCGGGTGG+TGG | + | chr7.1:19402720-19402739 | MS.gene067815:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 19400066 | 19402830 | 19400066 | ID=MS.gene067815 |
| chr7.1 | mRNA | 19400066 | 19402830 | 19400066 | ID=MS.gene067815.t1;Parent=MS.gene067815 |
| chr7.1 | exon | 19400066 | 19400725 | 19400066 | ID=MS.gene067815.t1.exon1;Parent=MS.gene067815.t1 |
| chr7.1 | CDS | 19400066 | 19400725 | 19400066 | ID=cds.MS.gene067815.t1;Parent=MS.gene067815.t1 |
| chr7.1 | exon | 19401720 | 19401813 | 19401720 | ID=MS.gene067815.t1.exon2;Parent=MS.gene067815.t1 |
| chr7.1 | CDS | 19401720 | 19401813 | 19401720 | ID=cds.MS.gene067815.t1;Parent=MS.gene067815.t1 |
| chr7.1 | exon | 19402613 | 19402830 | 19402613 | ID=MS.gene067815.t1.exon3;Parent=MS.gene067815.t1 |
| chr7.1 | CDS | 19402613 | 19402830 | 19402613 | ID=cds.MS.gene067815.t1;Parent=MS.gene067815.t1 |
| Gene Sequence |
| Protein sequence |
