AlfalfaGEDB | MS.gene067815

M. sativa cultivar XinJiangDaYe / MS.gene067815

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067815.t1	XP_003624631.1	95.2	252	6	3	1	252	1	246	7.10E-129	470.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067815.t1	A2Q5V9	95.2	252	6	3	1	252	1	246	5.1e-129	470.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050105	MS.gene067815	0.827668	1.38E-54	-1.69E-46
MS.gene050508	MS.gene067815	0.832682	8.22E-56	-1.69E-46
MS.gene050605	MS.gene067815	0.806179	9.33E-50	-1.69E-46
MS.gene052333	MS.gene067815	0.80763	4.60E-50	-1.69E-46
MS.gene055701	MS.gene067815	0.81036	1.20E-50	-1.69E-46
MS.gene056506	MS.gene067815	0.807596	4.68E-50	-1.69E-46
MS.gene059710	MS.gene067815	0.830564	2.74E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067815.t1	MTR_7g085790	95.238	252	6	3	1	252	1	246	2.09e-176	488
MS.gene067815.t1	MTR_7g085790	80.159	252	5	3	1	252	1	207	1.26e-140	396
MS.gene067815.t1	MTR_6g029250	48.413	252	99	8	1	252	1	221	9.43e-59	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067815.t1	AT5G18130	31.379	290	145	9	1	252	1	274	1.77e-31	119
MS.gene067815.t1	AT3G03870	34.559	272	146	14	1	252	1	260	1.18e-28	111
MS.gene067815.t1	AT5G18130	29.008	262	133	9	1	225	1	246	7.54e-19	84.7
MS.gene067815.t1	AT3G03870	31.120	241	135	13	1	222	1	229	3.73e-15	73.9

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Find 78 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACTCGTCTTTGACA+AGG	0.596384	7.1:+19400146	MS.gene067815:CDS
AAAGAACAAGACACAAATTG+TGG	0.626637	7.1:-19400628	None:intergenic
AACAAGACCAAAGTAGTATT+AGG	0.368502	7.1:+19400679	MS.gene067815:CDS
AAGGAAGGAGAGGACATGAA+TGG	0.517989	7.1:+19400537	MS.gene067815:CDS
AAGTGGAGCTTGACAGGAGT+TGG	0.528199	7.1:+19400576	MS.gene067815:CDS
AATCCAAGTCCCCGAGATAG+AGG	0.452399	7.1:+19400317	MS.gene067815:CDS
ACAACCATTGGATTGTTATG+TGG	0.583481	7.1:+19402702	MS.gene067815:CDS
ACAATTTGTGTCTTGTTCTT+TGG	0.297991	7.1:+19400630	MS.gene067815:CDS
ACCATTGGATTGTTATGTGG+CGG	0.673231	7.1:+19402705	MS.gene067815:CDS
ACCGCCACATAACAATCCAA+TGG	0.660322	7.1:-19402706	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACAAGACACAAATTG+TGG	-	chr7.1:19400631-19400650	None:intergenic	30.0%
AACAAGACCAAAGTAGTATT+AGG	+	chr7.1:19400679-19400698	MS.gene067815:CDS	30.0%
AAGAGTTGACATAAAGATCT+TGG	-	chr7.1:19400811-19400830	None:intergenic	30.0%
AATTAGGCCTCTAAACTAAA+AGG	-	chr7.1:19401442-19401461	None:intergenic	30.0%
ATATGATATTCTAACCATGG+TGG	+	chr7.1:19402579-19402598	MS.gene067815:intron	30.0%
ATTATTGTCCATCAAATGAC+AGG	-	chr7.1:19401551-19401570	None:intergenic	30.0%
ATTCAAAGCTGTTTACTTCA+GGG	-	chr7.1:19401312-19401331	None:intergenic	30.0%
GAACATGGAGAATGAAAATA+AGG	+	chr7.1:19400494-19400513	MS.gene067815:CDS	30.0%
GTTCAAATTGAATTGGAACA+TGG	-	chr7.1:19400245-19400264	None:intergenic	30.0%
TCAAAGAAATTATCCGTAAC+TGG	-	chr7.1:19402116-19402135	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	19400066	19402830	19400066	ID=MS.gene067815
chr7.1	mRNA	19400066	19402830	19400066	ID=MS.gene067815.t1;Parent=MS.gene067815
chr7.1	exon	19400066	19400725	19400066	ID=MS.gene067815.t1.exon1;Parent=MS.gene067815.t1
chr7.1	CDS	19400066	19400725	19400066	ID=cds.MS.gene067815.t1;Parent=MS.gene067815.t1
chr7.1	exon	19401720	19401813	19401720	ID=MS.gene067815.t1.exon2;Parent=MS.gene067815.t1
chr7.1	CDS	19401720	19401813	19401720	ID=cds.MS.gene067815.t1;Parent=MS.gene067815.t1
chr7.1	exon	19402613	19402830	19402613	ID=MS.gene067815.t1.exon3;Parent=MS.gene067815.t1
chr7.1	CDS	19402613	19402830	19402613	ID=cds.MS.gene067815.t1;Parent=MS.gene067815.t1

Gene Sequence

>MS.gene067815

ATGGATATCAATGAGTGGGTGATCCTTTCTGATGATGGCTTTTTTGATGGTGATGAGAAGCAAATTTTCTTAGATAAAAGAAACTCACTCGTCTTTGACAAGGATTACTTTTGCACCTCCCCAAAATCAACAAAAACCATTGATATTGAACCATTAAAAGTGCCAAAACAAATTTTCCATGTTCCAATTCAATTTGAACCCATCATTGACAAGGTTCCAAATGAAGGGCTGGTGAAAGAAAACACTGAAAAAATCCAAGTCCCCGAGATAGAGGAAGCTGATCAAGAGAGTGTTTCACAAGTTTTCTTTCATATAAAAGAGAACAAATTTGTTGACATGAAATTGGAGTCACCAAAATCTAGTAGTGGTAGAGGATTATTTTCTCCACTTGATGCAGACATGGAGATGATGACATCTCCTAGAATGAAGAACATGGAGAATGAAAATAAGGTTGTTATGTACTATGATGAGAAGGAAGGAGAGGACATGAATGGTGGTTTTAACTTGTGGAAGTGGAGCTTGACAGGAGTTGGAGCTATATGTTCTTTTGGTGTTGCTGCTGCCACAATTTGTGTCTTGTTCTTTGGAAGTCAACAAAGGAACAACAAACTCCAACAAGACCAAAGTAGTATTAGGTTCAAGATCTACACTGATGACAAGGTCAGTAAATGTTTTTTTGTTTACACATGTGAATTTTCTGTTGATTTTATCGATAACAAATCTTTGCGCAGAATCGGAACAACCAAGATCTTTATGTCAACTCTTACTATGTTTTATCTATGGATAAGACTTGAATCGGAAAACTTAAAGAATTTGAACCATATTCAATTAATACTAGTGTAATAATGTTACTCGCTCCTGAATTAATTGAGCTCTTGGCTCATTTTACACTTATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGAATTGAGAATGATGAAAGTAGTATTAATTAGAGTTATAAAGGGGAAAAAGTGGAATATATTGAATTGGGAATAATGAAAGTAGTATTGAAAATTGAAATGACTCAGTTATTTTGGGACACTTTTTTTTTAGTAAATGGCTCAGTTAATCCGGGAGGGAGGGAGTAGTATTTTTCTAATCACTTTTAAATTAAAAATATTGTTTGAGCATCTTGGTGTATATATGAGAATTTTAAAATAGGTCTTTCAACTAAAGAAATTAAAATTTTTGATTGAATCTTTAAACTTTTCAATATTTCATAACTAGATCCCTGAAGTAAACAGCTTTGAATCAGATCCTGGACATTTAAATATTTGTAATTATGATCTTGAATTTAGAAACTCAATTATAAATAATTTATGAGGGATATAATTGAAGATTCAGTGACTCAATTAAAAACCTTTTAGTTTAGAGGCCTAATTATAAATTATTAACAAGTATAAAGACTATTAAAAACAATTTTAGTTTAGAGATTTAAAAAGTATAGGATGGTGATGGAAGAGAAATTCCTGTCATTTGATGGACAATAATGTCATAGAAAAAAGGGGGTGATTGTTTTGGATCAAGTGTGCAAATTTTTAGTATTATTCTTGAATAGTCAAAATGGATCAGGTTCAAAATTTAATAAATTATGATGCTTAAATAATTGATGTGCACCTTAATTGTGATTGTGATTGCAGAGGGTTAAGCAAGTGGTACAACATGCAACAAAATTGAATGAAGCATTTGCAGCAGTAAGAGGTGTTCCATTGAGCAGAGCTCACATAACTTATGGTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTGACGGTAAAACAACTTCATTCAATAGATTAAACAAGAAACAATACAAATAGGTAGAGACACTTGAATTGGGACATTCCCCATCCATTGTCGAAAATCAAAGATCAAAGAAAAGATAACACATACATAATTGATCATACACATAGATTGTTTGAAAGCCAAAGTGACATAACCAAACCAAGAACAACAAACCAACATCAGTTCATTCAACCTCTTACAAACCCGGAACCTGGCAATATAGGGAAGAGAATCCACAGTCTTTTTTCCAATCCAGTTACGGATAATTTCTTTGACTTGTGTTCGCACATTTCGACTATCATTGGTCTCAAAATTGTCCAATTTTTCCAGATGTTTGAGAGCTGGTGGATGAATAGAGAGGTTGTTGCAATGGGGGCCAGCCTCGGAAGCTTCCTTAGTCTCTATGGATTGCCAACAAACACTAGCTACTTTGTTCCAAAAGACATAAACCTCTTGGGTCTTTTTGTCAAAAAAGAAGAAAGCAACCTTAAAACAAAATAAACAAAGACATAAACTAGAACTAAAACCAGCAGCAGAAATCAGATCCGAAGCGCCCAAGGACAAATTCTTAGATCCAAACAACCAGCAAGTTAAGCTCTTTTGGGACATTTCTTCAAACACCATGAAGACATACTTAAAACAAAATAAAAATAACAATAGAGCACAAAACCAAACATTAAAGCAGTAGAACACAGAAACATCCTCAAACCTGAGATCTATATGATATTCTAACCATGGTGGTTTTGATGGAGGGCGGGTGGGATGCACCATGAGGGTGGGGAGCAGCCATGAAGGAGCAAGCTTAACTGTTTTCGGATTTGGGATGGAGGAGACAAACATGACAACCATTGGATTGTTATGTGGCGGTGGCTCGGGTGGTGGTCGCATCGGCGGGAAGGAAAGCTTGGCGGCACCTGATGGTGTGGAAGAAAGATCTTTGGTGAGTGAGAAAGGAAATGGAAAAGGGTGA

Protein sequence

>MS.gene067815.t1

MDINEWVILSDDGFFDGDEKQIFLDKRNSLVFDKDYFCTSPKSTKTIDIEPLKVPKQIFHVPIQFEPIIDKVPNEGLVKENTEKIQVPEIEEADQESVSQVFFHIKENKFVDMKLESPKSSSGRGLFSPLDADMEMMTSPRMKNMENENKVVMYYDEKEGEDMNGGFNLWKWSLTGVGAICSFGVAAATICVLFFGSQQRNNKLQQDQSSIRFKIYTDDKRVKQVVQHATKLNEAFAAVRGVPLSRAHITYGRVGCTMRVGSSHEGASLTVFGFGMEETNMTTIGLLCGGGSGGGRIGGKESLAAPDGVEERSLVSEKGNGKG