AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056506


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056506.t1 MTR_8g070510 97.357 227 6 0 1 227 1 227 5.42e-164 452
MS.gene056506.t1 MTR_8g070510 97.309 223 6 0 5 227 1 223 7.38e-161 444
MS.gene056506.t1 MTR_7g451050 41.584 202 116 2 18 219 18 217 6.75e-54 172
MS.gene056506.t1 MTR_7g451050 41.584 202 116 2 18 219 36 235 1.17e-53 172
MS.gene056506.t1 MTR_7g451050 36.571 175 109 2 18 192 18 190 4.17e-36 126
MS.gene056506.t1 MTR_7g451050 35.359 181 115 2 18 198 36 214 6.33e-36 126
MS.gene056506.t1 MTR_1g026190 29.487 156 88 3 53 208 382 515 1.45e-13 69.7
MS.gene056506.t1 MTR_8g066630 27.439 164 96 5 53 213 12 155 7.92e-12 62.0
MS.gene056506.t1 MTR_4g132070 25.641 156 94 2 53 208 391 524 9.37e-12 64.3
MS.gene056506.t1 MTR_5g092810 25.806 155 93 2 54 208 393 525 2.89e-11 62.8
MS.gene056506.t1 MTR_4g066660 28.205 156 90 2 53 208 372 505 3.95e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056506.t1 AT4G26470 74.312 218 54 1 1 218 1 216 5.92e-119 338
MS.gene056506.t1 AT4G26470 74.312 218 54 1 1 218 64 279 1.43e-117 337
MS.gene056506.t1 AT4G26470 71.354 192 53 1 1 192 1 190 4.30e-98 285
MS.gene056506.t1 AT3G24110 43.578 218 120 3 9 224 9 225 2.76e-57 181
MS.gene056506.t1 AT3G24110 43.578 218 120 3 9 224 12 228 3.52e-57 181
MS.gene056506.t1 AT4G04740 25.000 204 118 5 8 208 330 501 1.29e-12 67.0
MS.gene056506.t1 AT4G04740 25.000 204 118 5 8 208 330 501 1.29e-12 67.0
MS.gene056506.t1 AT4G04740 25.000 204 118 5 8 208 330 501 1.29e-12 67.0
MS.gene056506.t1 AT4G04740 25.000 204 118 5 8 208 330 501 1.29e-12 67.0
MS.gene056506.t1 AT4G04740 25.000 204 118 5 8 208 330 501 1.29e-12 67.0
MS.gene056506.t1 AT4G04740 25.000 204 118 5 8 208 330 501 1.29e-12 67.0
MS.gene056506.t1 AT4G04720 26.923 156 92 2 53 208 379 512 7.79e-12 64.7
MS.gene056506.t1 AT4G04720 26.923 156 92 2 53 208 379 512 7.79e-12 64.7
MS.gene056506.t1 AT4G04700 27.059 170 99 3 42 208 317 464 3.85e-11 62.4
MS.gene056506.t1 AT3G20410 27.097 155 91 4 54 208 392 524 7.05e-11 61.6
MS.gene056506.t1 AT3G20410 27.097 155 91 4 54 208 392 524 7.05e-11 61.6
MS.gene056506.t1 AT4G04695 27.564 156 91 2 53 208 331 464 7.14e-11 61.6

Find 48 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGAATGGTGAACTTTA+AGG 0.231657 8.3:-32014785 MS.gene056506:CDS
TGTATTCTTAGACAAGAATA+AGG 0.312157 8.3:-32016168 MS.gene056506:CDS
TCAAATGTGGCCTCCAGATT+TGG 0.325162 8.3:+32016209 None:intergenic
AACCAAGCTTGAGGCTAAAA+TGG 0.325884 8.3:-32017860 MS.gene056506:CDS
ACATCCGGGGAACGTTCTTC+TGG 0.336685 8.3:-32016098 MS.gene056506:CDS
ACGAATTGGCATGCCAAATC+TGG 0.337140 8.3:-32016222 MS.gene056506:CDS
TATAGTGTTGAATGATTTCA+TGG 0.344014 8.3:+32017801 None:intergenic
TTGCCAAAATGCAGAAGAAA+TGG 0.366048 8.3:-32014818 MS.gene056506:intron
AGAATAGCCATGAAAAGATT+TGG 0.372821 8.3:-32016074 MS.gene056506:intron
GCCGCAGATGAAGATTCTAA+TGG 0.378648 8.3:-32017063 MS.gene056506:intron
CCGCAGATGAAGATTCTAAT+GGG 0.395441 8.3:-32017062 MS.gene056506:intron
AGGGCCATCTTTGAGCAGTT+TGG 0.430873 8.3:-32017736 MS.gene056506:intron
CTTGTCTAGAAATCACGAAT+TGG 0.446229 8.3:-32016236 MS.gene056506:intron
ATGTAGTTTCATTTATAGCT+TGG 0.465153 8.3:+32016117 None:intergenic
GCTATAAATGAAACTACATC+CGG 0.467940 8.3:-32016113 MS.gene056506:CDS
AAAATGCAGAAGAAATGGAT+TGG 0.476289 8.3:-32014813 MS.gene056506:intron
GAAGAAGTGTTTCAGTAAGC+TGG 0.478339 8.3:-32017019 MS.gene056506:CDS
ATGGGAGGTGCAATGGGAAA+GGG 0.479453 8.3:-32017913 MS.gene056506:CDS
GATACTGCATGAAGTGCTGC+AGG 0.484247 8.3:+32016871 None:intergenic
GATGGGAGGTGCAATGGGAA+AGG 0.497322 8.3:-32017914 MS.gene056506:CDS
AAATGCAGAAGAAATGGATT+GGG 0.498895 8.3:-32014812 MS.gene056506:intron
GGTTGGAATTGATGAATTTG+AGG 0.500253 8.3:-32014737 MS.gene056506:CDS
GGAGGCCACATTTGAGACAT+TGG 0.509823 8.3:-32016201 MS.gene056506:CDS
TTGGCGATGGGAGGTGCAAT+GGG 0.518653 8.3:-32017919 None:intergenic
TTCGCATTTACACGGTGGGT+TGG 0.523575 8.3:-32014754 MS.gene056506:CDS
ATTGGCGATGGGAGGTGCAA+TGG 0.524730 8.3:-32017920 None:intergenic
AATTGATGAATTTGAGGACG+AGG 0.525205 8.3:-32014731 MS.gene056506:CDS
ATGAGAGCTTCAGAAAATGC+AGG 0.530176 8.3:-32017756 MS.gene056506:CDS
CCTACCAAACTGCTCAAAGA+TGG 0.539084 8.3:+32017732 None:intergenic
TTCTTAGACAAGAATAAGGA+CGG 0.561005 8.3:-32016164 MS.gene056506:CDS
TCTTCCAGAAGAACGTTCCC+CGG 0.576812 8.3:+32016094 None:intergenic
CTATAAATGAAACTACATCC+GGG 0.577846 8.3:-32016112 MS.gene056506:CDS
CTGCAGGGTCATCTTTGAGA+AGG 0.604557 8.3:+32016887 None:intergenic
CAAGCTTGAGGCTAAAATGG+TGG 0.616956 8.3:-32017857 MS.gene056506:CDS
TCTTAGACAAGAATAAGGAC+GGG 0.620398 8.3:-32016163 MS.gene056506:CDS
GTTGATTGATTGGCGATGGG+AGG 0.623063 8.3:-32017928 None:intergenic
TGGTGGAAGCAATGCAACGG+AGG 0.623952 8.3:-32017840 MS.gene056506:CDS
TGAGGACGAGGAAAATGCAT+AGG 0.624859 8.3:-32014719 None:intergenic
ATCAACCAATGTCTCAAATG+TGG 0.635646 8.3:+32016196 None:intergenic
TGAGAGCTTCAGAAAATGCA+GGG 0.640702 8.3:-32017755 MS.gene056506:CDS
GGTGGAAGCAATGCAACGGA+GGG 0.644209 8.3:-32017839 MS.gene056506:CDS
AATTGGCATGCCAAATCTGG+AGG 0.644569 8.3:-32016219 MS.gene056506:CDS
CGCAGATGAAGATTCTAATG+GGG 0.650490 8.3:-32017061 MS.gene056506:intron
GGTAGCAGAAACCAAGCTTG+AGG 0.658820 8.3:-32017869 MS.gene056506:CDS
TATAAATGAAACTACATCCG+GGG 0.670677 8.3:-32016111 MS.gene056506:CDS
AAATGGTGGAAGCAATGCAA+CGG 0.672556 8.3:-32017843 MS.gene056506:CDS
ATGCAACGGAGGGAATGTCA+AGG 0.680566 8.3:-32017829 MS.gene056506:CDS
ATACTGCATGAAGTGCTGCA+GGG 0.692431 8.3:+32016872 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTAAAATTTCAAAATTAT+AGG + chr8.3:32016240-32016259 None:intergenic 10.0%
!! ATAAAAAAAACAATAAAACT+TGG + chr8.3:32016984-32017003 None:intergenic 10.0%
!! TAAAAAAAACAATAAAACTT+GGG + chr8.3:32016983-32017002 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr8.3:32017497-32017516 MS.gene056506:intron 10.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr8.3:32017588-32017607 MS.gene056506:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr8.3:32017247-32017266 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr8.3:32017175-32017194 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr8.3:32017366-32017385 None:intergenic 15.0%
!! CTGATATAAATAATGTTTAT+TGG - chr8.3:32014973-32014992 MS.gene056506:intron 15.0%
!! GAAAATTACATATTTAATTC+AGG - chr8.3:32016120-32016139 MS.gene056506:CDS 15.0%
!! GTATATATGTTTATTGTAAT+TGG - chr8.3:32015522-32015541 MS.gene056506:intron 15.0%
!! TAATGAATATATACAAACTT+GGG + chr8.3:32017777-32017796 None:intergenic 15.0%
!! TACAATCACATAAAAAAAAA+TGG + chr8.3:32015411-32015430 None:intergenic 15.0%
!! TTAATGAATATATACAAACT+TGG + chr8.3:32017778-32017797 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr8.3:32017526-32017545 MS.gene056506:intron 15.0%
!!! AATTTTTGCGAAATTTTTTT+CGG + chr8.3:32017331-32017350 None:intergenic 15.0%
!!! ATAAGTCAATTTTTTTTTGT+AGG - chr8.3:32017558-32017577 MS.gene056506:intron 15.0%
!!! GAATATTATTTGAGTTTAAT+GGG - chr8.3:32015885-32015904 MS.gene056506:intron 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr8.3:32017525-32017544 MS.gene056506:intron 15.0%
!!! TAACTGCATTTTTAAATTAA+TGG + chr8.3:32015980-32015999 None:intergenic 15.0%
!!! TAAGCTATTTTTTTAACAAA+AGG - chr8.3:32015130-32015149 MS.gene056506:intron 15.0%
!!! TAAGTCAATTTTTTTTTGTA+GGG - chr8.3:32017559-32017578 MS.gene056506:intron 15.0%
!!! TTATTTACATAGTTTAAAGT+AGG - chr8.3:32017000-32017019 MS.gene056506:CDS 15.0%
!!! TTTTCTAAATAAAATGCAAA+AGG + chr8.3:32016105-32016124 None:intergenic 15.0%
!! AAAAATGCAGTTATAAAAGT+GGG - chr8.3:32015987-32016006 MS.gene056506:intron 20.0%
!! AGCTTCAATAATATAGATAT+TGG - chr8.3:32016955-32016974 MS.gene056506:CDS 20.0%
!! ATTAGTATAAGCAACATTTA+AGG - chr8.3:32016787-32016806 MS.gene056506:intron 20.0%
!! CAAAAATAGTATGGATTTAA+AGG + chr8.3:32016081-32016100 None:intergenic 20.0%
!! GCTTCAATAATATAGATATT+GGG - chr8.3:32016956-32016975 MS.gene056506:CDS 20.0%
!! GTGTTAAAAACGTTATTAAA+AGG - chr8.3:32017301-32017320 MS.gene056506:intron 20.0%
!! TAAAAATGCAGTTATAAAAG+TGG - chr8.3:32015986-32016005 MS.gene056506:intron 20.0%
!! TAAACATATATACGACAATT+TGG + chr8.3:32015515-32015534 None:intergenic 20.0%
!! TATAAATTATCAACGAAAAC+AGG + chr8.3:32016340-32016359 None:intergenic 20.0%
!!! AAAAGGGTTAAATATGTTTT+TGG + chr8.3:32017749-32017768 None:intergenic 20.0%
!!! ATATGTTTTCACAAGAAAAT+TGG - chr8.3:32016712-32016731 MS.gene056506:intron 20.0%
!!! ATCTTGTCTTTATTTTTTCT+TGG - chr8.3:32017100-32017119 MS.gene056506:intron 20.0%
!!! ATGTGATTTTAATGATGATT+TGG - chr8.3:32015680-32015699 MS.gene056506:intron 20.0%
!!! CCATTTTATTTATTTTAGCA+GGG - chr8.3:32017629-32017648 MS.gene056506:intron 20.0%
!!! GAGTATAGAAATTTTTTGTA+GGG + chr8.3:32017204-32017223 None:intergenic 20.0%
!!! GGAATATTATTTGAGTTTAA+TGG - chr8.3:32015884-32015903 MS.gene056506:intron 20.0%
!!! TATGTTTTCACAAGAAAATT+GGG - chr8.3:32016713-32016732 MS.gene056506:intron 20.0%
!!! TCTTGTCTTTATTTTTTCTT+GGG - chr8.3:32017101-32017120 MS.gene056506:intron 20.0%
!!! TGAGTATAGAAATTTTTTGT+AGG + chr8.3:32017205-32017224 None:intergenic 20.0%
!!! TGTGATTTTAATGATGATTT+GGG - chr8.3:32015681-32015700 MS.gene056506:intron 20.0%
!!! TTGTTTGTTATTCAATTTAG+AGG + chr8.3:32016741-32016760 None:intergenic 20.0%
! AAACAAATTTGGATTGAGTA+AGG + chr8.3:32017236-32017255 None:intergenic 25.0%
! AATGGTATGACATGAAAAAA+TGG + chr8.3:32015962-32015981 None:intergenic 25.0%
! ATATGTGTGGAATTTAAACA+AGG + chr8.3:32016598-32016617 None:intergenic 25.0%
! ATGTAGTTTCATTTATAGCT+TGG + chr8.3:32016519-32016538 None:intergenic 25.0%
! ATTTGAAAGGATAGAGAAAA+TGG + chr8.3:32016365-32016384 None:intergenic 25.0%
! CCCTGCTAAAATAAATAAAA+TGG + chr8.3:32017632-32017651 None:intergenic 25.0%
! GTTGATGTTTGAATTATTTC+GGG - chr8.3:32015835-32015854 MS.gene056506:intron 25.0%
! TATGTGTGGAATTTAAACAA+GGG + chr8.3:32016597-32016616 None:intergenic 25.0%
! TATTTAATTCAGGAGATGTT+TGG - chr8.3:32016130-32016149 MS.gene056506:CDS 25.0%
! TGTATTCTTAGACAAGAATA+AGG - chr8.3:32016465-32016484 MS.gene056506:intron 25.0%
! TTTATTTCCATAAACTCTCT+AGG + chr8.3:32015208-32015227 None:intergenic 25.0%
!! ATACATTTAACTTCAGAGAA+TGG - chr8.3:32015863-32015882 MS.gene056506:intron 25.0%
!! GGTTGATGTTTGAATTATTT+CGG - chr8.3:32015834-32015853 MS.gene056506:intron 25.0%
!! GTTAAGAAGTTTTTCTGTTA+TGG - chr8.3:32016179-32016198 MS.gene056506:CDS 25.0%
!! TATAGTGTTGAATGATTTCA+TGG + chr8.3:32014835-32014854 None:intergenic 25.0%
!! TCTTGGGTTAATTATGTTTT+TGG - chr8.3:32017117-32017136 MS.gene056506:intron 25.0%
!! TTAAGTTGTTTACTCAAACA+CGG + chr8.3:32015060-32015079 None:intergenic 25.0%
!!! CATCAATTTTTGGGAATTTT+AGG + chr8.3:32014860-32014879 None:intergenic 25.0%
!!! GCCATTTTATTTATTTTAGC+AGG - chr8.3:32017628-32017647 MS.gene056506:intron 25.0%
!!! TGCTTTTGAAAACAACTTAT+AGG + chr8.3:32015787-32015806 None:intergenic 25.0%
!!! TGTTTTTGGTCTCTATAAAA+TGG + chr8.3:32017735-32017754 None:intergenic 25.0%
AAAATGCAGAAGAAATGGAT+TGG - chr8.3:32017820-32017839 MS.gene056506:CDS 30.0%
AAATGGAATGGTGAACTTTA+AGG - chr8.3:32017848-32017867 MS.gene056506:CDS 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr8.3:32017160-32017179 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG - chr8.3:32017603-32017622 MS.gene056506:intron 30.0%
ACAAACTTGGGAAGAAAAAA+GGG + chr8.3:32017765-32017784 None:intergenic 30.0%
AGAATAGCCATGAAAAGATT+TGG - chr8.3:32016559-32016578 MS.gene056506:intron 30.0%
ATAATTCAAACATCAACCAG+AGG + chr8.3:32015832-32015851 None:intergenic 30.0%
ATATAAGCACTTACATCACA+TGG + chr8.3:32015109-32015128 None:intergenic 30.0%
CAATTATCAAGCTCATTCAA+AGG - chr8.3:32015435-32015454 MS.gene056506:intron 30.0%
CCTACCTATTGTATAAATTC+AGG + chr8.3:32014999-32015018 None:intergenic 30.0%
CCTGAATTTATACAATAGGT+AGG - chr8.3:32014996-32015015 MS.gene056506:intron 30.0%
CTATAAATGAAACTACATCC+GGG - chr8.3:32016521-32016540 MS.gene056506:intron 30.0%
GCAAAAGGACAAAAATAGTA+TGG + chr8.3:32016090-32016109 None:intergenic 30.0%
GCTATAAATGAAACTACATC+CGG - chr8.3:32016520-32016539 MS.gene056506:intron 30.0%
GTATGTCAGCAAAAATGAAA+TGG - chr8.3:32016492-32016511 MS.gene056506:intron 30.0%
GTCATAGAGAACAATTTGAA+AGG + chr8.3:32016378-32016397 None:intergenic 30.0%
GTTGAAATTAACCAAGTGAT+TGG - chr8.3:32016916-32016935 MS.gene056506:CDS 30.0%
TACAAACTTGGGAAGAAAAA+AGG + chr8.3:32017766-32017785 None:intergenic 30.0%
TATAAATGAAACTACATCCG+GGG - chr8.3:32016522-32016541 MS.gene056506:intron 30.0%
TTATAAAAGTGGGATGATGT+GGG - chr8.3:32015997-32016016 MS.gene056506:intron 30.0%
TTCTTAGACAAGAATAAGGA+CGG - chr8.3:32016469-32016488 MS.gene056506:intron 30.0%
TTGGCCTGAATTTATACAAT+AGG - chr8.3:32014992-32015011 MS.gene056506:intron 30.0%
! AAATGCAGAAGAAATGGATT+GGG - chr8.3:32017821-32017840 MS.gene056506:CDS 30.0%
! AATCCATTTCTTCTGCATTT+TGG + chr8.3:32017821-32017840 None:intergenic 30.0%
! AGTTTCTTTTCGCATTTACA+CGG - chr8.3:32017871-32017890 MS.gene056506:CDS 30.0%
! ATAAACTGAAAACCAGCTTT+TGG - chr8.3:32015223-32015242 MS.gene056506:intron 30.0%
! CAAGTTTAGAACACTATGAA+AGG + chr8.3:32017463-32017482 None:intergenic 30.0%
! CTAATTTACACCGACATTTT+AGG + chr8.3:32015911-32015930 None:intergenic 30.0%
! GTACTAGTTTCAACTTTCAA+TGG + chr8.3:32017060-32017079 None:intergenic 30.0%
! TCAACTTTCAATGGAGTTTT+AGG + chr8.3:32017051-32017070 None:intergenic 30.0%
! TGAAGCTCTCATCAATTTTT+GGG + chr8.3:32014869-32014888 None:intergenic 30.0%
! TGAATCACCCAAAAAGTTTT+GGG - chr8.3:32014743-32014762 MS.gene056506:CDS 30.0%
!! GAAATGGATTGGGATAAAAA+TGG - chr8.3:32017831-32017850 MS.gene056506:CDS 30.0%
!!! TTTTAGGATGAGTATGATGA+AGG + chr8.3:32017035-32017054 None:intergenic 30.0%
!!! TTTTGCGAAATTTTTTTCGG+AGG + chr8.3:32017328-32017347 None:intergenic 30.0%
AAAAAATGGAGGACTCTCAT+TGG + chr8.3:32015948-32015967 None:intergenic 35.0%
AAGCTATCCTAGAGAGTTTA+TGG - chr8.3:32015198-32015217 MS.gene056506:intron 35.0%
AAGGAACTCAGAACATAGTA+GGG - chr8.3:32016806-32016825 MS.gene056506:intron 35.0%
AATTGATGAATTTGAGGACG+AGG - chr8.3:32017902-32017921 MS.gene056506:CDS 35.0%
ACTGACATAAGCACTTGTTT+GGG + chr8.3:32015290-32015309 None:intergenic 35.0%
ATCAACCAATGTCTCAAATG+TGG + chr8.3:32016440-32016459 None:intergenic 35.0%
CATTAACCTATGTTTGTCAC+CGG - chr8.3:32015478-32015497 MS.gene056506:intron 35.0%
CTTGTCTAGAAATCACGAAT+TGG - chr8.3:32016397-32016416 MS.gene056506:intron 35.0%
GGATTGGGATAAAAATGGAA+TGG - chr8.3:32017836-32017855 MS.gene056506:CDS 35.0%
GGTAGGTTTCTACTTCAAAT+TGG - chr8.3:32014918-32014937 MS.gene056506:intron 35.0%
GGTATGACATGAAAAAATGG+AGG + chr8.3:32015959-32015978 None:intergenic 35.0%
GGTTGGAATTGATGAATTTG+AGG - chr8.3:32017896-32017915 MS.gene056506:CDS 35.0%
GTATTCCTCATATTGTGTGT+AGG - chr8.3:32016839-32016858 MS.gene056506:intron 35.0%
GTTATAAAAGTGGGATGATG+TGG - chr8.3:32015996-32016015 MS.gene056506:intron 35.0%
TAAGGAACTCAGAACATAGT+AGG - chr8.3:32016805-32016824 MS.gene056506:intron 35.0%
TACTGACATAAGCACTTGTT+TGG + chr8.3:32015291-32015310 None:intergenic 35.0%
TCTTAGACAAGAATAAGGAC+GGG - chr8.3:32016470-32016489 MS.gene056506:intron 35.0%
TTGCCAAAATGCAGAAGAAA+TGG - chr8.3:32017815-32017834 MS.gene056506:CDS 35.0%
! ACATTGATTGAGAGAGCTTA+TGG + chr8.3:32015267-32015286 None:intergenic 35.0%
! CAACTGACCAAATCTTTTCA+TGG + chr8.3:32016569-32016588 None:intergenic 35.0%
! CTGAAGCTCTCATCAATTTT+TGG + chr8.3:32014870-32014889 None:intergenic 35.0%
! GCTGGAAATTTCTTTTTCTG+AGG - chr8.3:32015632-32015651 MS.gene056506:intron 35.0%
! GTGAATCACCCAAAAAGTTT+TGG - chr8.3:32014742-32014761 MS.gene056506:CDS 35.0%
! GTTTAATGGGCCTAAAATGT+CGG - chr8.3:32015898-32015917 MS.gene056506:intron 35.0%
! TCTGCTACCCAAAACTTTTT+GGG + chr8.3:32014753-32014772 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+GGG + chr8.3:32017145-32017164 None:intergenic 35.0%
! TTCTGCTACCCAAAACTTTT+TGG + chr8.3:32014754-32014773 None:intergenic 35.0%
!! GCTACTTCTTGCTTTTACTT+TGG + chr8.3:32015028-32015047 None:intergenic 35.0%
!! TTTCTTCTGCATTTTGGCAA+AGG + chr8.3:32017815-32017834 None:intergenic 35.0%
AACACACACATGCTCATCTT+AGG - chr8.3:32016647-32016666 MS.gene056506:intron 40.0%
AACCAAGCTTGAGGCTAAAA+TGG - chr8.3:32014773-32014792 MS.gene056506:CDS 40.0%
ACCAAGTGATTGGACTAAAG+TGG - chr8.3:32016926-32016945 MS.gene056506:CDS 40.0%
ACCACTTTAGTCCAATCACT+TGG + chr8.3:32016930-32016949 None:intergenic 40.0%
AGCAATGCAATGTAGTAGGA+AGG - chr8.3:32016291-32016310 MS.gene056506:intron 40.0%
AGGATGAGTATGATGAAGGT+TGG + chr8.3:32017031-32017050 None:intergenic 40.0%
ATGAGAGCTTCAGAAAATGC+AGG - chr8.3:32014877-32014896 MS.gene056506:intron 40.0%
CCCATTAGAATCTTCATCTG+CGG + chr8.3:32015574-32015593 None:intergenic 40.0%
CCGCAGATGAAGATTCTAAT+GGG - chr8.3:32015571-32015590 MS.gene056506:intron 40.0%
CGCAGATGAAGATTCTAATG+GGG - chr8.3:32015572-32015591 MS.gene056506:intron 40.0%
CTGAAGCAATGCAATGTAGT+AGG - chr8.3:32016287-32016306 MS.gene056506:intron 40.0%
GACAACCTACACACAATATG+AGG + chr8.3:32016847-32016866 None:intergenic 40.0%
GTGTTCAAGCAAGCTTGAAT+GGG + chr8.3:32016632-32016651 None:intergenic 40.0%
TCATTCAAAGGCTTCAACAG+TGG - chr8.3:32015447-32015466 MS.gene056506:intron 40.0%
TGAGAGCTTCAGAAAATGCA+GGG - chr8.3:32014878-32014897 MS.gene056506:intron 40.0%
TGTGTTCAAGCAAGCTTGAA+TGG + chr8.3:32016633-32016652 None:intergenic 40.0%
! AAATGGTGGAAGCAATGCAA+CGG - chr8.3:32014790-32014809 MS.gene056506:CDS 40.0%
! CTTACAAGGTCGCAATTTTG+TGG + chr8.3:32017146-32017165 None:intergenic 40.0%
! TACAAGGTCGCAATTTTGTG+GGG + chr8.3:32017144-32017163 None:intergenic 40.0%
! TCTTTTCGCATTTACACGGT+GGG - chr8.3:32017875-32017894 MS.gene056506:CDS 40.0%
! TTCTTTTCGCATTTACACGG+TGG - chr8.3:32017874-32017893 MS.gene056506:CDS 40.0%
!! GAAGAAGTGTTTCAGTAAGC+TGG - chr8.3:32015614-32015633 MS.gene056506:intron 40.0%
AATTGGCATGCCAAATCTGG+AGG - chr8.3:32016414-32016433 MS.gene056506:intron 45.0%
ACGAATTGGCATGCCAAATC+TGG - chr8.3:32016411-32016430 MS.gene056506:intron 45.0%
CAAGCTTGAGGCTAAAATGG+TGG - chr8.3:32014776-32014795 MS.gene056506:CDS 45.0%
CATGAAACACTGCGGCTATT+CGG - chr8.3:32015348-32015367 MS.gene056506:intron 45.0%
CCATCTTTGAGCAGTTTGGT+AGG - chr8.3:32014901-32014920 MS.gene056506:intron 45.0%
CCTACCAAACTGCTCAAAGA+TGG + chr8.3:32014904-32014923 None:intergenic 45.0%
CTTACGACATGTCCAAAAGC+TGG + chr8.3:32015238-32015257 None:intergenic 45.0%
GCCGCAGATGAAGATTCTAA+TGG - chr8.3:32015570-32015589 MS.gene056506:intron 45.0%
GCCTAGATCATGAAACACTG+CGG - chr8.3:32015340-32015359 MS.gene056506:intron 45.0%
GGGATGATGTGGGAAAATAG+TGG - chr8.3:32016007-32016026 MS.gene056506:intron 45.0%
TCAAATGTGGCCTCCAGATT+TGG + chr8.3:32016427-32016446 None:intergenic 45.0%
!! ATACTGCATGAAGTGCTGCA+GGG + chr8.3:32015764-32015783 None:intergenic 45.0%
!! CACCATTTTAGCCTCAAGCT+TGG + chr8.3:32014778-32014797 None:intergenic 45.0%
AGGGCCATCTTTGAGCAGTT+TGG - chr8.3:32014897-32014916 MS.gene056506:intron 50.0%
ATGCAACGGAGGGAATGTCA+AGG - chr8.3:32014804-32014823 MS.gene056506:CDS 50.0%
CAATTTGGCCATGCATGTGC+CGG + chr8.3:32015500-32015519 None:intergenic 50.0%
GCCGCAGTGTTTCATGATCT+AGG + chr8.3:32015344-32015363 None:intergenic 50.0%
GGCACTTGAGTGCATATGTG+TGG + chr8.3:32016611-32016630 None:intergenic 50.0%
GGTAGCAGAAACCAAGCTTG+AGG - chr8.3:32014764-32014783 MS.gene056506:CDS 50.0%
GTCTTGTGCATTCTGACCTC+TGG - chr8.3:32015813-32015832 MS.gene056506:intron 50.0%
TCTTCCAGAAGAACGTTCCC+CGG + chr8.3:32016542-32016561 None:intergenic 50.0%
TTCGCATTTACACGGTGGGT+TGG - chr8.3:32017879-32017898 MS.gene056506:CDS 50.0%
! ATGGGAGGTGCAATGGGAAA+GGG - chr8.3:32014720-32014739 MS.gene056506:CDS 50.0%
! CATGTGCCGGTGACAAACAT+AGG + chr8.3:32015487-32015506 None:intergenic 50.0%
! CTGCAGGGTCATCTTTGAGA+AGG + chr8.3:32015749-32015768 None:intergenic 50.0%
! GGAGGCCACATTTGAGACAT+TGG - chr8.3:32016432-32016451 MS.gene056506:intron 50.0%
!! GATACTGCATGAAGTGCTGC+AGG + chr8.3:32015765-32015784 None:intergenic 50.0%
ACATCCGGGGAACGTTCTTC+TGG - chr8.3:32016535-32016554 MS.gene056506:intron 55.0%
GGTGGAAGCAATGCAACGGA+GGG - chr8.3:32014794-32014813 MS.gene056506:CDS 55.0%
GTTTGTCACCGGCACATGCA+TGG - chr8.3:32015489-32015508 MS.gene056506:intron 55.0%
TGGTGGAAGCAATGCAACGG+AGG - chr8.3:32014793-32014812 MS.gene056506:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 32014720 32017935 32014720 ID=MS.gene056506
chr8.3 mRNA 32014720 32017935 32014720 ID=MS.gene056506.t1;Parent=MS.gene056506
chr8.3 exon 32017737 32017935 32017737 ID=MS.gene056506.t1.exon1;Parent=MS.gene056506.t1
chr8.3 CDS 32017737 32017935 32017737 ID=cds.MS.gene056506.t1;Parent=MS.gene056506.t1
chr8.3 exon 32016876 32017078 32016876 ID=MS.gene056506.t1.exon2;Parent=MS.gene056506.t1
chr8.3 CDS 32016876 32017078 32016876 ID=cds.MS.gene056506.t1;Parent=MS.gene056506.t1
chr8.3 exon 32016075 32016249 32016075 ID=MS.gene056506.t1.exon3;Parent=MS.gene056506.t1
chr8.3 CDS 32016075 32016249 32016075 ID=cds.MS.gene056506.t1;Parent=MS.gene056506.t1
chr8.3 exon 32014720 32014826 32014720 ID=MS.gene056506.t1.exon4;Parent=MS.gene056506.t1
chr8.3 CDS 32014720 32014826 32014720 ID=cds.MS.gene056506.t1;Parent=MS.gene056506.t1
Gene Sequence

>MS.gene056506

ATGGGAGGTGCAATGGGAAAGGGTGAATCACCCAAAAAGTTTTGGGTAGCAGAAACCAAGCTTGAGGCTAAAATGGTGGAAGCAATGCAACGGAGGGAATGTCAAGGATGTTCCATGAAATCATTCAACACTATAATCCTAAAATTCCCAAAAATTGATGAGAGCTTCAGAAAATGCAGGGCCATCTTTGAGCAGTTTGGTAGGTTTCTACTTCAAATTGGTACTTTATTTTAATATATCTTCTAACAGAAGTCTGATATAAATAATGTTTATTGGCCTGAATTTATACAATAGGTAGGATCATGCCAAAGTAAAAGCAAGAAGTAGCTGAATTTAGCCGTGTTTGAGTAAACAACTTAATTAAGCATTTATAGCATAAACACTTGCCATGTGATGTAAGTGCTTATATATAAGCTATTTTTTTAACAAAAGGTAAAATAAAGTCAAACTTTTCACATAAGCTATAAGTTGTTTTCATAAGCTATCCTAGAGAGTTTATGGAAATAAACTGAAAACCAGCTTTTGGACATGTCGTAAGTTGTTTCCATAAGCTCTCTCAATCAATGTCCCAAACAAGTGCTTATGTCAGTAAATAAGCTAAATTAAGTCATTTTTATTATGCCTAGATCATGAAACACTGCGGCTATTCGGAGTTGAAATATATATTAGAATTCAATTTGATTTTATTCCATTTTTTTTTATGTGATTGTAACTGCAATTATCAAGCTCATTCAAAGGCTTCAACAGTGGAAAAAAGTCATTAACCTATGTTTGTCACCGGCACATGCATGGCCAAATTGTCGTATATATGTTTATTGTAATTGGTAAGAGATGTATTTTTATTTCTTTTGCCGCAGATGAAGATTCTAATGGGGCAATAGATCATGAAGAGTTGAAGAAGTGTTTCAGTAAGCTGGAAATTTCTTTTTCTGAGGAAGAGATCAATGATCTTTTTGAAGCATGTGATTTTAATGATGATTTGGGAATGAAGTTCAATGAGTTCATTGTACTTCTTTGTCTTGTCTACCTTCTCAAAGATGACCCTGCAGCACTTCATGCAGTATCCTATAAGTTGTTTTCAAAAGCATATCATGTCTTGTGCATTCTGACCTCTGGTTGATGTTTGAATTATTTCGGGTTATTATACATTTAACTTCAGAGAATGGAATATTATTTGAGTTTAATGGGCCTAAAATGTCGGTGTAAATTAGTTTTACACTGACAGCCAATGAGAGTCCTCCATTTTTTCATGTCATACCATTAATTTAAAAATGCAGTTATAAAAGTGGGATGATGTGGGAAAATAGTGGATTTTTATTGATGTCAGTGTAAAATTATTTTGCGATGACAATGCATATCCTTTAAATCCATACTATTTTTGTCCTTTTGCATTTTATTTAGAAAATTACATATTTAATTCAGGAGATGTTTGGACATTATGAGCATTGCAGTTTTATTTGTTAAGAAGTTTTTCTGTTATGGCTTTACTTTTCTAATCATGCATTTTTTTAGTAAAACCTATAATTTTGAAATTTTAAGTTGTCATGCAAGCTTTGAAGTTTGAACTCTGAAGCAATGCAATGTAGTAGGAAGGAAAACATATCTCATACATGTCTTCCTGTTTTCGTTGATAATTTATAAGCCATTTTCTCTATCCTTTCAAATTGTTCTCTATGACTTGTCTAGAAATCACGAATTGGCATGCCAAATCTGGAGGCCACATTTGAGACATTGGTTGATACATTTGTATTCTTAGACAAGAATAAGGACGGGTATGTCAGCAAAAATGAAATGGTCCAAGCTATAAATGAAACTACATCCGGGGAACGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGGTCAGTTGTCTCTCCCTTGTTTAAATTCCACACATATGCACTCAAGTGCCCATTCAAGCTTGCTTGAACACACACATGCTCATCTTAGGAGTGTGCATTATCATATACTAATGTTTTAAAAATATGCTTTGATATGTTTTCACAAGAAAATTGGGTGCCTCTAAATTGAATAACAAACAAAGAGCAACTGTTACATTTTTCGTAACATTAGTATAAGCAACATTTAAGGAACTCAGAACATAGTAGGGTGAGTATTGTGTATTCCTCATATTGTGTGTAGGTTGTCAAATTATCTGTTATATTCTTCTGTTGCTGAAATATGTTAACGAGCATCAGTTGAAATTAACCAAGTGATTGGACTAAAGTGGTTTATGAGCTTCAATAATATAGATATTGGGACCCAAGTTTTATTGTTTTTTTTATTTACATAGTTTAAAGTAGGAATAACCAACCTTCATCATACTCATCCTAAAACTCCATTGAAAGTTGAAACTAGTACATAGTAACTACTCAGACATAATCTTGTCTTTATTTTTTCTTGGGTTAATTATGTTTTTGGTCCCCACAAAATTGCGACCTTGTAAGTTTAGTCCTTACTTAATTTTAATAGCATTTTTAATCCCTACAAAAAATTTCTATACTCAATATTAGTCCTTACTCAATCCAAATTTGTTTAATTTATGCTTAAACTCTTAAGTTTTTCAACAATTTTTTACAGTCGTGTTAAAAACGTTATTAAAAGGTCCTCCGAAAAAAATTTCGCAAAAATTTGATTTCTACGTCCATATTTTTGTTACTTATATCTTAAACTTTTGTCGTTTTAAAAAATTCATATTTAATTTATTTCATGTTAAAAAATTATAGATTTTAGTAAATGAACCTTTCATAGTGTTCTAAACTTGTATAAAAAGAATCGTTAAAAAATTTAAGAGTTTAAGGATAATTAAACAAAATTTATTTTAGCAGGGACTAAAATTATAAGTCAATTTTTTTTTGTAGGGATTAAAAAAGCTATTAAAATTAAGTAAGGACTAAACTTAGAAGGTCGCCATTTTATTTATTTTAGCAGGGACTAAAATTATAAGTCAATTTTTTTTTGTAGGGATTAAAAAAGCTATTAAAATTAAGTAAGGACTAAACTTAGAAGGTCGCCATTTTATAGAGACCAAAAACATATTTAACCCTTTTTTCTTCCCAAGTTTGTATATATTCATTAACAACTATTTTATATCCTTTGCCAAAATGCAGAAGAAATGGATTGGGATAAAAATGGAATGGTGAACTTTAAGGAGTTTCTTTTCGCATTTACACGGTGGGTTGGAATTGATGAATTTGAGGACGAGGAAAATGCATAG

Protein sequence

>MS.gene056506.t1

MGGAMGKGESPKKFWVAETKLEAKMVEAMQRRECQGCSMKSFNTIILKFPKIDESFRKCRAIFEQFDEDSNGAIDHEELKKCFSKLEISFSEEEINDLFEACDFNDDLGMKFNEFIVLLCLVYLLKDDPAALHAKSRIGMPNLEATFETLVDTFVFLDKNKDGYVSKNEMVQAINETTSGERSSGRIAMKRFEEMDWDKNGMVNFKEFLFAFTRWVGIDEFEDEENA