AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050605


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050605.t1 MTR_8g028230 41.892 592 252 16 15 561 14 558 1.37e-118 362
MS.gene050605.t1 MTR_8g028230 41.043 575 240 17 15 561 14 517 1.30e-111 342
MS.gene050605.t1 MTR_8g028230 43.775 498 217 11 92 561 9 471 2.90e-108 332
MS.gene050605.t1 MTR_8g028230 44.130 460 204 10 120 561 20 444 3.01e-103 318
MS.gene050605.t1 MTR_5g009750 41.972 355 142 7 62 358 66 414 6.50e-73 245
MS.gene050605.t1 MTR_7g105430 26.950 423 202 13 22 357 36 438 1.35e-24 108
MS.gene050605.t1 MTR_3g051430 26.616 263 179 6 135 396 198 447 1.77e-21 99.0
MS.gene050605.t1 MTR_5g092610 28.696 230 150 3 129 358 188 403 1.83e-21 99.0
MS.gene050605.t1 MTR_4g052400 26.131 398 221 13 22 356 48 435 8.30e-19 90.5
MS.gene050605.t1 MTR_4g052400 29.545 220 148 4 139 356 59 273 2.81e-17 85.1
MS.gene050605.t1 MTR_2g086890 26.394 269 184 5 116 379 205 464 9.61e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050605.t1 AT5G41620 32.101 595 268 16 59 543 42 610 2.39e-66 227
MS.gene050605.t1 AT5G41620 34.241 514 250 14 92 543 6 493 1.55e-63 217
MS.gene050605.t1 AT5G41620 34.241 514 250 14 92 543 6 493 1.55e-63 217
MS.gene050605.t1 AT1G64180 31.071 560 286 15 62 554 61 587 1.80e-57 202
MS.gene050605.t1 AT5G41620 46.396 222 113 2 139 358 36 253 6.29e-54 190
MS.gene050605.t1 AT2G46250 35.588 340 153 8 27 329 20 330 1.72e-41 156
MS.gene050605.t1 AT3G11590 29.647 425 206 11 13 357 35 446 2.60e-35 140
MS.gene050605.t1 AT2G46250 40.097 207 103 2 123 329 54 239 7.38e-33 130
MS.gene050605.t1 AT3G11590 33.333 219 142 2 139 357 70 284 7.98e-27 114
MS.gene050605.t1 AT1G50660 27.206 272 174 8 129 396 212 463 7.49e-25 109
MS.gene050605.t1 AT3G20350 24.556 338 218 10 75 396 140 456 9.93e-24 106

Find 105 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCCTTGACTTCTTTAA+TGG 0.167681 7.3:+1375606 None:intergenic
GGTGGAAAAGTTGAAACTTT+TGG 0.234292 7.3:-1377551 MS.gene050605:CDS
AGTAAAAGACAATACATTTA+TGG 0.302608 7.3:-1375110 MS.gene050605:CDS
TTCATAATCTCTTACTCCTT+TGG 0.317548 7.3:+1375876 None:intergenic
TCACCCTTGCCTACCTTCAT+TGG 0.324543 7.3:-1375584 MS.gene050605:CDS
GCGGATAAGGATCGCATTAA+TGG 0.328056 7.3:-1375823 MS.gene050605:CDS
GAGGGGAAATCAAGTGAAAT+TGG 0.348447 7.3:-1375439 MS.gene050605:CDS
CCATTCTGCAGTTACAGTTA+AGG 0.372039 7.3:-1375215 MS.gene050605:CDS
ATTGAGCTAAGGCAATTAGA+AGG 0.381758 7.3:+1376631 None:intergenic
TTCTAATTGCCTTAGCTCAA+TGG 0.385938 7.3:-1376629 MS.gene050605:CDS
CACTAGCCAGCTTCTGATAC+AGG 0.387417 7.3:+1375998 None:intergenic
TACTTCACATTTCAGAGGCT+TGG 0.392687 7.3:-1375780 MS.gene050605:CDS
ATTGGATTCCTTTCAACTAA+AGG 0.395468 7.3:-1375566 MS.gene050605:CDS
ACTGCTTGAAGCAAGGTTAG+AGG 0.396153 7.3:-1375083 MS.gene050605:CDS
GAAAATGAATAAGCAGGAAA+TGG 0.398382 7.3:-1376154 MS.gene050605:CDS
CATTCTGCAGTTACAGTTAA+GGG 0.406187 7.3:-1375214 MS.gene050605:CDS
TTGGAGAAGAGAGGAGGAAG+AGG 0.410484 7.3:-1377532 MS.gene050605:CDS
AGACTGAGACATGTTGAAAT+CGG 0.412710 7.3:+1375153 None:intergenic
GAAAAGGGAAGAAGGAATAA+TGG 0.415845 7.3:-1377572 MS.gene050605:CDS
TGTTTCCAACTAACTGTTCA+AGG 0.418652 7.3:+1375302 None:intergenic
TATGCATAATAGTGCGGATA+AGG 0.427280 7.3:-1375836 MS.gene050605:CDS
CACAGCCTTGAACAGTTAGT+TGG 0.447691 7.3:-1375307 MS.gene050605:CDS
TAGCCGGCGTCTTGAAGAAC+AGG 0.450663 7.3:-1376262 MS.gene050605:CDS
TATATCCTGAGAGTATTTGC+AGG 0.458388 7.3:-1375252 MS.gene050605:CDS
CTTAACAAGTGCTTTGTTGA+GGG 0.464066 7.3:-1375457 MS.gene050605:CDS
CCAACAAGTTTGAACAGAAA+AGG 0.465731 7.3:-1375495 MS.gene050605:CDS
TATTGTCTCCTTTAGTTGAA+AGG 0.466986 7.3:+1375558 None:intergenic
ATCAGTCGACAGAAATTGTT+CGG 0.469683 7.3:-1376671 MS.gene050605:CDS
TTTGTCATCAGAAGGTGATA+AGG 0.472314 7.3:-1375275 MS.gene050605:CDS
TATGAGGAGGCTCATGGTGG+TGG 0.473227 7.3:+1377368 None:intergenic
GAAATCTCTGTGCTAAACTC+TGG 0.476454 7.3:-1377402 MS.gene050605:CDS
AACTCTTGTTGATGAGAAGA+AGG 0.480434 7.3:+1377460 None:intergenic
GTGACATGAATTAATTCCCT+TGG 0.485875 7.3:+1375327 None:intergenic
AGAAAAGAAAATGAATAAGC+AGG 0.487246 7.3:-1376160 MS.gene050605:CDS
TTAATGGTGATAGCCTTGAT+AGG 0.491514 7.3:-1375807 MS.gene050605:CDS
TACTTACTTCCATTGAGCTA+AGG 0.494927 7.3:+1376620 None:intergenic
GAGAACCTTGACTAACTCTC+TGG 0.496123 7.3:+1376290 None:intergenic
AAAGTCCACCAGAAAATGAT+AGG 0.498720 7.3:-1375357 MS.gene050605:CDS
CCTTGACTTCTTTAATGGAG+GGG 0.499105 7.3:+1375611 None:intergenic
TCCTTGACTTCTTTAATGGA+GGG 0.499288 7.3:+1375610 None:intergenic
AGGAAGAGATTGAAGATGAA+AGG 0.499321 7.3:-1376044 MS.gene050605:CDS
CTCGAGTCTCTAGCAGATGC+TGG 0.502686 7.3:+1376730 None:intergenic
AAGCAAGTTCAAGATGGTAT+TGG 0.504529 7.3:-1375736 MS.gene050605:CDS
GTCTACTAACAAATTGCCTA+GGG 0.505083 7.3:-1375134 MS.gene050605:CDS
AGAAGAGAGGAGGAAGAGGA+AGG 0.512890 7.3:-1377528 MS.gene050605:CDS
TTCCTTGACTTCTTTAATGG+AGG 0.515224 7.3:+1375609 None:intergenic
GACTGAGACATGTTGAAATC+GGG 0.515513 7.3:+1375154 None:intergenic
CATCACACAAATTCTCCAAA+AGG 0.518761 7.3:+1375905 None:intergenic
AGAAAGCCTGTATCAGAAGC+TGG 0.520623 7.3:-1376004 MS.gene050605:CDS
CACCAGAAAATGATAGGTGC+AGG 0.525944 7.3:-1375351 MS.gene050605:CDS
CCCCTCCATTAAAGAAGTCA+AGG 0.526840 7.3:-1375611 MS.gene050605:CDS
AGTTGAAAGGAATCCAATGA+AGG 0.527897 7.3:+1375571 None:intergenic
TTCAAACTTGTTGGTACCAA+CGG 0.528206 7.3:+1375504 None:intergenic
CAACTATTGAATGTGTCTCT+AGG 0.530200 7.3:+1375704 None:intergenic
TGTGAAGTATTAGCCTATCA+AGG 0.530785 7.3:+1375794 None:intergenic
AACAGTTCTTTGTCATCAGA+AGG 0.531010 7.3:-1375283 MS.gene050605:CDS
AGTCTACTAACAAATTGCCT+AGG 0.531127 7.3:-1375135 MS.gene050605:CDS
AATAGTGAAAGCTCTGATAG+TGG 0.535399 7.3:-1376223 MS.gene050605:CDS
GCTTCCTCGGCAAAATTATG+AGG 0.538410 7.3:+1375529 None:intergenic
GGTACCAACGGAAGCTTCCT+CGG 0.539258 7.3:+1375516 None:intergenic
TGTATGGAGAAAAGGGAAGA+AGG 0.539368 7.3:-1377580 MS.gene050605:CDS
CCTTAACTGTAACTGCAGAA+TGG 0.540574 7.3:+1375215 None:intergenic
TCTTCCCTGCAAATACTCTC+AGG 0.540737 7.3:+1375247 None:intergenic
AAATCTCTGTGCTAAACTCT+GGG 0.540999 7.3:-1377401 MS.gene050605:CDS
ACTTAACAAGTGCTTTGTTG+AGG 0.542539 7.3:-1375458 MS.gene050605:CDS
GTTCAACACCACCACCCACT+TGG 0.555840 7.3:-1377498 MS.gene050605:CDS
TTGAGCTAAGGCAATTAGAA+GGG 0.559447 7.3:+1376632 None:intergenic
TTAACAAGTGCTTTGTTGAG+GGG 0.561075 7.3:-1375456 MS.gene050605:CDS
TGGCAAAACTGCTTGAAGCA+AGG 0.561650 7.3:-1375090 MS.gene050605:CDS
ACAAGTCTCCAAGTGGGTGG+TGG 0.563442 7.3:+1377490 None:intergenic
TCACACAAAGTTGATTCTCT+AGG 0.566264 7.3:+1375388 None:intergenic
ACTAGATCTTTCTCAAACAC+AGG 0.567197 7.3:-1376199 MS.gene050605:CDS
TCAAGGTTCTCAAACGTAGC+CGG 0.567882 7.3:-1376278 MS.gene050605:CDS
GCTAATACTTCACATTTCAG+AGG 0.570361 7.3:-1375785 MS.gene050605:CDS
TCATAGTAGTCCCTCTCACC+AGG 0.572281 7.3:-1377344 MS.gene050605:intron
CAAATGAAGCAAGTTCAAGA+TGG 0.575876 7.3:-1375742 MS.gene050605:CDS
AAATGATAGGTGCAGGACCA+AGG 0.580181 7.3:-1375344 MS.gene050605:CDS
GAGGGACTACTATGACTATG+AGG 0.581362 7.3:+1377352 None:intergenic
GAATCCAATGAAGGTAGGCA+AGG 0.585447 7.3:+1375580 None:intergenic
AAGAGATTGAAGATGAAAGG+AGG 0.590101 7.3:-1376041 MS.gene050605:CDS
AGCTGTAGTTCAATCAGTCA+AGG 0.591551 7.3:-1376064 MS.gene050605:CDS
AATGATAGGTGCAGGACCAA+GGG 0.594126 7.3:-1375343 MS.gene050605:CDS
TATGACTATGAGGAGGCTCA+TGG 0.595092 7.3:+1377362 None:intergenic
ATGAGGAGGCTCATGGTGGT+GGG 0.595906 7.3:+1377369 None:intergenic
AAGAAAAGTACCTGGTGAGA+GGG 0.598007 7.3:+1377334 None:intergenic
CAAGAAAAGTACCTGGTGAG+AGG 0.598348 7.3:+1377333 None:intergenic
GGAAATCAAGTGAAATTGGA+AGG 0.599065 7.3:-1375435 MS.gene050605:CDS
TTCTATTATGCATAATAGTG+CGG 0.602383 7.3:-1375842 MS.gene050605:CDS
TTTGCCGAGGAAGCTTCCGT+TGG 0.615175 7.3:-1375520 MS.gene050605:CDS
GAAAGGAATCCAATGAAGGT+AGG 0.616541 7.3:+1375575 None:intergenic
AAGGGAAGAAGGAATAATGG+TGG 0.618908 7.3:-1377569 MS.gene050605:CDS
CAAGCATCAGTTGTTCAGCA+CGG 0.633336 7.3:-1376697 MS.gene050605:CDS
GTCATCCAGAGAGTTAGTCA+AGG 0.646355 7.3:-1376295 MS.gene050605:CDS
TGAGCTAAGGCAATTAGAAG+GGG 0.649817 7.3:+1376633 None:intergenic
ATATCCTGAGAGTATTTGCA+GGG 0.650780 7.3:-1375251 MS.gene050605:CDS
AATCCAATGAAGGTAGGCAA+GGG 0.653423 7.3:+1375581 None:intergenic
GAAGTGAAGTCTTTGTTACG+TGG 0.664790 7.3:-1375967 MS.gene050605:CDS
TCAACAAGTCTCCAAGTGGG+TGG 0.665483 7.3:+1377487 None:intergenic
AAAGTCAACAAGTCTCCAAG+TGG 0.666077 7.3:+1377483 None:intergenic
AAGTCAACAAGTCTCCAAGT+GGG 0.688185 7.3:+1377484 None:intergenic
GGACTACTATGACTATGAGG+AGG 0.700817 7.3:+1377355 None:intergenic
GACTATGAGGAGGCTCATGG+TGG 0.712982 7.3:+1377365 None:intergenic
CATCCTGTTCTTCAAGACGC+CGG 0.714018 7.3:+1376259 None:intergenic
GTTTGAACAGAAAAGGACTG+CGG 0.744270 7.3:-1375488 MS.gene050605:CDS
TCTACTAACAAATTGCCTAG+GGG 0.750446 7.3:-1375133 MS.gene050605:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAATGACATTTT+TGG - chr7.3:1375354-1375373 MS.gene050605:CDS 10.0%
!! AGAATGAAATAAATTTGAAT+AGG - chr7.3:1375652-1375671 MS.gene050605:CDS 15.0%
!! AAACAGAAATTACCAATTAT+AGG + chr7.3:1375441-1375460 None:intergenic 20.0%
!! AGTAAAAGACAATACATTTA+TGG - chr7.3:1377530-1377549 MS.gene050605:CDS 20.0%
!! AGTTCTATATATCAATTAAG+AGG - chr7.3:1375496-1375515 MS.gene050605:CDS 20.0%
!! ATTCTTTAACATCAACATTA+GGG + chr7.3:1375637-1375656 None:intergenic 20.0%
!! GTTCTATATATCAATTAAGA+GGG - chr7.3:1375497-1375516 MS.gene050605:CDS 20.0%
! AAACATTAATTCCTAAAGTC+AGG - chr7.3:1375791-1375810 MS.gene050605:CDS 25.0%
! AAAGGAAGAACACAATTATA+TGG + chr7.3:1375745-1375764 None:intergenic 25.0%
! AATTTCCTTGACTTCTTTAA+TGG + chr7.3:1377037-1377056 None:intergenic 25.0%
! AGAAAAATGTATGGAGAAAA+GGG - chr7.3:1375053-1375072 MS.gene050605:CDS 25.0%
! AGAAAAGAAAATGAATAAGC+AGG - chr7.3:1376480-1376499 MS.gene050605:intron 25.0%
! CATTCTTTAACATCAACATT+AGG + chr7.3:1375638-1375657 None:intergenic 25.0%
! TAAACTTCTTGAGATTCAAA+TGG + chr7.3:1376059-1376078 None:intergenic 25.0%
! TCGAAAGAGAAAAAAAAGAA+AGG - chr7.3:1376710-1376729 MS.gene050605:CDS 25.0%
! TTCTATTATGCATAATAGTG+CGG - chr7.3:1376798-1376817 MS.gene050605:intron 25.0%
!! AAAAAAAGAAAGGATCCTTT+TGG - chr7.3:1376720-1376739 MS.gene050605:CDS 25.0%
!! AAAAGTGTATGTAAACTAGA+TGG - chr7.3:1376242-1376261 MS.gene050605:CDS 25.0%
!! ACACATTCATCTTTTTATAC+CGG + chr7.3:1376297-1376316 None:intergenic 25.0%
!!! ATATTTTGAATTTCAACTGC+TGG - chr7.3:1375863-1375882 MS.gene050605:CDS 25.0%
!!! GAAGCATTAAAATTGATTTG+AGG - chr7.3:1376157-1376176 MS.gene050605:CDS 25.0%
!!! TGTGTTATTTTTCGTAAAAC+AGG - chr7.3:1376312-1376331 MS.gene050605:intron 25.0%
AGTCTTTCAGCTATCAATAA+AGG + chr7.3:1375763-1375782 None:intergenic 30.0%
ATTCCTCTGATGAAAAATCA+AGG + chr7.3:1375585-1375604 None:intergenic 30.0%
ATTGGATTCCTTTCAACTAA+AGG - chr7.3:1377074-1377093 MS.gene050605:intron 30.0%
GAAAATGAATAAGCAGGAAA+TGG - chr7.3:1376486-1376505 MS.gene050605:intron 30.0%
GAACACAATTATATGGACAT+TGG + chr7.3:1375738-1375757 None:intergenic 30.0%
GAGAAAAATGTATGGAGAAA+AGG - chr7.3:1375052-1375071 MS.gene050605:CDS 30.0%
GGAAAGAAGAGAAAAATGTA+TGG - chr7.3:1375044-1375063 MS.gene050605:CDS 30.0%
TAGGGATAGTTAATTCGAAA+AGG + chr7.3:1375619-1375638 None:intergenic 30.0%
TATTGTCTCCTTTAGTTGAA+AGG + chr7.3:1377085-1377104 None:intergenic 30.0%
TCAAACATAATCCTGACTTT+AGG + chr7.3:1375805-1375824 None:intergenic 30.0%
TTCATAATCTCTTACTCCTT+TGG + chr7.3:1376767-1376786 None:intergenic 30.0%
TTCATTAAAAATGCCTCAGA+AGG + chr7.3:1376215-1376234 None:intergenic 30.0%
! ATCTTTTTATACCGGATGAA+AGG + chr7.3:1376289-1376308 None:intergenic 30.0%
! TCTTTTTATACCGGATGAAA+GGG + chr7.3:1376288-1376307 None:intergenic 30.0%
! TGTTTTCAGATGCCTATAAT+TGG - chr7.3:1375426-1375445 MS.gene050605:CDS 30.0%
!! TACAAAACAAGAAAAGTACC+TGG + chr7.3:1375317-1375336 None:intergenic 30.0%
!! TCTGAGGCATTTTTAATGAA+TGG - chr7.3:1376215-1376234 MS.gene050605:CDS 30.0%
!! TCTGTTTCAGCTTTAAAAGT+TGG - chr7.3:1375454-1375473 MS.gene050605:CDS 30.0%
!!! GTTTTTTTCGACTGTTTAAC+AGG + chr7.3:1377456-1377475 None:intergenic 30.0%
AAAGTCCACCAGAAAATGAT+AGG - chr7.3:1377283-1377302 MS.gene050605:intron 35.0%
AAATCTCTGTGCTAAACTCT+GGG - chr7.3:1375239-1375258 MS.gene050605:CDS 35.0%
AACAGTTCTTTGTCATCAGA+AGG - chr7.3:1377357-1377376 MS.gene050605:CDS 35.0%
AAGAGATTGAAGATGAAAGG+AGG - chr7.3:1376599-1376618 MS.gene050605:intron 35.0%
AAGCAAGTTCAAGATGGTAT+TGG - chr7.3:1376904-1376923 MS.gene050605:intron 35.0%
ACTAGATCTTTCTCAAACAC+AGG - chr7.3:1376441-1376460 MS.gene050605:intron 35.0%
AGACTGAGACATGTTGAAAT+CGG + chr7.3:1377490-1377509 None:intergenic 35.0%
AGGAAGAGATTGAAGATGAA+AGG - chr7.3:1376596-1376615 MS.gene050605:intron 35.0%
AGTCTACTAACAAATTGCCT+AGG - chr7.3:1377505-1377524 MS.gene050605:CDS 35.0%
AGTTGAAAGGAATCCAATGA+AGG + chr7.3:1377072-1377091 None:intergenic 35.0%
ATCAGTCGACAGAAATTGTT+CGG - chr7.3:1375969-1375988 MS.gene050605:CDS 35.0%
ATTGAGCTAAGGCAATTAGA+AGG + chr7.3:1376012-1376031 None:intergenic 35.0%
ATTTGAGGAAAATCTCCATG+AGG - chr7.3:1376172-1376191 MS.gene050605:CDS 35.0%
CAAATGAAGCAAGTTCAAGA+TGG - chr7.3:1376898-1376917 MS.gene050605:intron 35.0%
CAACTATTGAATGTGTCTCT+AGG + chr7.3:1376939-1376958 None:intergenic 35.0%
CATCACACAAATTCTCCAAA+AGG + chr7.3:1376738-1376757 None:intergenic 35.0%
CATTCTGCAGTTACAGTTAA+GGG - chr7.3:1377426-1377445 MS.gene050605:CDS 35.0%
CCAACAAGTTTGAACAGAAA+AGG - chr7.3:1377145-1377164 MS.gene050605:intron 35.0%
GAAAAGGGAAGAAGGAATAA+TGG - chr7.3:1375068-1375087 MS.gene050605:CDS 35.0%
GCTAATACTTCACATTTCAG+AGG - chr7.3:1376855-1376874 MS.gene050605:intron 35.0%
GGAAATCAAGTGAAATTGGA+AGG - chr7.3:1377205-1377224 MS.gene050605:intron 35.0%
GTCTACTAACAAATTGCCTA+GGG - chr7.3:1377506-1377525 MS.gene050605:CDS 35.0%
GTGACATGAATTAATTCCCT+TGG + chr7.3:1377316-1377335 None:intergenic 35.0%
TACTTACTTCCATTGAGCTA+AGG + chr7.3:1376023-1376042 None:intergenic 35.0%
TATGCATAATAGTGCGGATA+AGG - chr7.3:1376804-1376823 MS.gene050605:intron 35.0%
TCCTTGACTTCTTTAATGGA+GGG + chr7.3:1377033-1377052 None:intergenic 35.0%
TCTACTAACAAATTGCCTAG+GGG - chr7.3:1377507-1377526 MS.gene050605:CDS 35.0%
TGTTTCCAACTAACTGTTCA+AGG + chr7.3:1377341-1377360 None:intergenic 35.0%
TTCCTTGACTTCTTTAATGG+AGG + chr7.3:1377034-1377053 None:intergenic 35.0%
TTCTAATTGCCTTAGCTCAA+TGG - chr7.3:1376011-1376030 MS.gene050605:CDS 35.0%
TTGAGCTAAGGCAATTAGAA+GGG + chr7.3:1376011-1376030 None:intergenic 35.0%
TTTGAGGAAAATCTCCATGA+GGG - chr7.3:1376173-1376192 MS.gene050605:CDS 35.0%
TTTGTCATCAGAAGGTGATA+AGG - chr7.3:1377365-1377384 MS.gene050605:CDS 35.0%
! AACTCTTGTTGATGAGAAGA+AGG + chr7.3:1375183-1375202 None:intergenic 35.0%
! AATAGTGAAAGCTCTGATAG+TGG - chr7.3:1376417-1376436 MS.gene050605:intron 35.0%
! ACTTAACAAGTGCTTTGTTG+AGG - chr7.3:1377182-1377201 MS.gene050605:intron 35.0%
! CCTTTTCTGTTCAAACTTGT+TGG + chr7.3:1377148-1377167 None:intergenic 35.0%
! CTTAACAAGTGCTTTGTTGA+GGG - chr7.3:1377183-1377202 MS.gene050605:intron 35.0%
! GATACTTTTACCCTTTCATC+CGG - chr7.3:1376275-1376294 MS.gene050605:CDS 35.0%
! GGTGGAAAAGTTGAAACTTT+TGG - chr7.3:1375089-1375108 MS.gene050605:CDS 35.0%
! TCACACAAAGTTGATTCTCT+AGG + chr7.3:1377255-1377274 None:intergenic 35.0%
! TGTGAAGTATTAGCCTATCA+AGG + chr7.3:1376849-1376868 None:intergenic 35.0%
! TTAACAAGTGCTTTGTTGAG+GGG - chr7.3:1377184-1377203 MS.gene050605:intron 35.0%
! TTAATGGTGATAGCCTTGAT+AGG - chr7.3:1376833-1376852 MS.gene050605:intron 35.0%
! TTGTGTGATGATTTTGCCAA+AGG - chr7.3:1376748-1376767 MS.gene050605:intron 35.0%
!! AAAAGTTGGTGACTTTGGTT+TGG - chr7.3:1375468-1375487 MS.gene050605:CDS 35.0%
!! ATATCCTGAGAGTATTTGCA+GGG - chr7.3:1377389-1377408 MS.gene050605:CDS 35.0%
!! GCTTTAAAAGTTGGTGACTT+TGG - chr7.3:1375463-1375482 MS.gene050605:CDS 35.0%
!! TATATCCTGAGAGTATTTGC+AGG - chr7.3:1377388-1377407 MS.gene050605:CDS 35.0%
!! TTCAAACTTGTTGGTACCAA+CGG + chr7.3:1377139-1377158 None:intergenic 35.0%
!! TTGAAACTTTTGGAGAAGAG+AGG - chr7.3:1375099-1375118 MS.gene050605:CDS 35.0%
!!! ATTTTCTGGTGGACTTTGTA+CGG + chr7.3:1377280-1377299 None:intergenic 35.0%
AAAGTCAACAAGTCTCCAAG+TGG + chr7.3:1375160-1375179 None:intergenic 40.0%
AAGGGAAGAAGGAATAATGG+TGG - chr7.3:1375071-1375090 MS.gene050605:CDS 40.0%
AAGTCAACAAGTCTCCAAGT+GGG + chr7.3:1375159-1375178 None:intergenic 40.0%
AATCCAATGAAGGTAGGCAA+GGG + chr7.3:1377062-1377081 None:intergenic 40.0%
AGCTGTAGTTCAATCAGTCA+AGG - chr7.3:1376576-1376595 MS.gene050605:intron 40.0%
CCATTCTGCAGTTACAGTTA+AGG - chr7.3:1377425-1377444 MS.gene050605:CDS 40.0%
CCTTAACTGTAACTGCAGAA+TGG + chr7.3:1377428-1377447 None:intergenic 40.0%
CCTTGACTTCTTTAATGGAG+GGG + chr7.3:1377032-1377051 None:intergenic 40.0%
GAAAGGAATCCAATGAAGGT+AGG + chr7.3:1377068-1377087 None:intergenic 40.0%
GAAATCTCTGTGCTAAACTC+TGG - chr7.3:1375238-1375257 MS.gene050605:CDS 40.0%
GAAGTGAAGTCTTTGTTACG+TGG - chr7.3:1376673-1376692 MS.gene050605:CDS 40.0%
GACTGAGACATGTTGAAATC+GGG + chr7.3:1377489-1377508 None:intergenic 40.0%
GAGGGGAAATCAAGTGAAAT+TGG - chr7.3:1377201-1377220 MS.gene050605:intron 40.0%
GTTTGAACAGAAAAGGACTG+CGG - chr7.3:1377152-1377171 MS.gene050605:intron 40.0%
TACTTCACATTTCAGAGGCT+TGG - chr7.3:1376860-1376879 MS.gene050605:intron 40.0%
TGAGCTAAGGCAATTAGAAG+GGG + chr7.3:1376010-1376029 None:intergenic 40.0%
TGTATGGAGAAAAGGGAAGA+AGG - chr7.3:1375060-1375079 MS.gene050605:CDS 40.0%
! GCTCCTTGATTTTTCATCAG+AGG - chr7.3:1375579-1375598 MS.gene050605:CDS 40.0%
! GTATTGTCTTTTACTCCCCT+AGG + chr7.3:1377525-1377544 None:intergenic 40.0%
! TTCACCTCATAATTTTGCCG+AGG - chr7.3:1377107-1377126 MS.gene050605:intron 40.0%
!! AAACTTTTGGAGAAGAGAGG+AGG - chr7.3:1375102-1375121 MS.gene050605:CDS 40.0%
!! AAGAAAAGTACCTGGTGAGA+GGG + chr7.3:1375309-1375328 None:intergenic 40.0%
!!! TGCAGAGAGTGTTTTTGAAG+TGG + chr7.3:1375217-1375236 None:intergenic 40.0%
AAATGATAGGTGCAGGACCA+AGG - chr7.3:1377296-1377315 MS.gene050605:intron 45.0%
AATGATAGGTGCAGGACCAA+GGG - chr7.3:1377297-1377316 MS.gene050605:intron 45.0%
ACTGCTTGAAGCAAGGTTAG+AGG - chr7.3:1377557-1377576 MS.gene050605:CDS 45.0%
AGAAAGCCTGTATCAGAAGC+TGG - chr7.3:1376636-1376655 MS.gene050605:CDS 45.0%
CAAGCATCAGTTGTTCAGCA+CGG - chr7.3:1375943-1375962 MS.gene050605:CDS 45.0%
CACAGCCTTGAACAGTTAGT+TGG - chr7.3:1377333-1377352 MS.gene050605:intron 45.0%
CACCAGAAAATGATAGGTGC+AGG - chr7.3:1377289-1377308 MS.gene050605:intron 45.0%
CATCGACGATAAATCCCTCA+TGG + chr7.3:1376190-1376209 None:intergenic 45.0%
CCCCTCCATTAAAGAAGTCA+AGG - chr7.3:1377029-1377048 MS.gene050605:intron 45.0%
GAATCCAATGAAGGTAGGCA+AGG + chr7.3:1377063-1377082 None:intergenic 45.0%
GAGAACCTTGACTAACTCTC+TGG + chr7.3:1376353-1376372 None:intergenic 45.0%
GAGGGACTACTATGACTATG+AGG + chr7.3:1375291-1375310 None:intergenic 45.0%
GCGGATAAGGATCGCATTAA+TGG - chr7.3:1376817-1376836 MS.gene050605:intron 45.0%
GCTTCCTCGGCAAAATTATG+AGG + chr7.3:1377114-1377133 None:intergenic 45.0%
GGACTACTATGACTATGAGG+AGG + chr7.3:1375288-1375307 None:intergenic 45.0%
GTACGTCAGCTCTCTTCATA+AGG + chr7.3:1375705-1375724 None:intergenic 45.0%
GTCATCCAGAGAGTTAGTCA+AGG - chr7.3:1376345-1376364 MS.gene050605:intron 45.0%
TATCGTCGATGATCCTTCTG+AGG - chr7.3:1376199-1376218 MS.gene050605:CDS 45.0%
TATGACTATGAGGAGGCTCA+TGG + chr7.3:1375281-1375300 None:intergenic 45.0%
TCAAGGTTCTCAAACGTAGC+CGG - chr7.3:1376362-1376381 MS.gene050605:intron 45.0%
TCTTCCCTGCAAATACTCTC+AGG + chr7.3:1377396-1377415 None:intergenic 45.0%
TGGCAAAACTGCTTGAAGCA+AGG - chr7.3:1377550-1377569 MS.gene050605:CDS 45.0%
! CTGCACCTATCATTTTCTGG+TGG + chr7.3:1377291-1377310 None:intergenic 45.0%
! GTCCTGCACCTATCATTTTC+TGG + chr7.3:1377294-1377313 None:intergenic 45.0%
!! CAAGAAAAGTACCTGGTGAG+AGG + chr7.3:1375310-1375329 None:intergenic 45.0%
!! AAAAAAAAATTAATTGAAAA+TGG + chr7.3:1375341-1375360 None:intergenic 5.0%
AGAAGAGAGGAGGAAGAGGA+AGG - chr7.3:1375112-1375131 MS.gene050605:CDS 50.0%
CACTAGCCAGCTTCTGATAC+AGG + chr7.3:1376645-1376664 None:intergenic 50.0%
CATCCTGTTCTTCAAGACGC+CGG + chr7.3:1376384-1376403 None:intergenic 50.0%
TCAACAAGTCTCCAAGTGGG+TGG + chr7.3:1375156-1375175 None:intergenic 50.0%
TCACCCTTGCCTACCTTCAT+TGG - chr7.3:1377056-1377075 MS.gene050605:intron 50.0%
TCATAGTAGTCCCTCTCACC+AGG - chr7.3:1375296-1375315 MS.gene050605:CDS 50.0%
TTGGAGAAGAGAGGAGGAAG+AGG - chr7.3:1375108-1375127 MS.gene050605:CDS 50.0%
! AGCAGATGCTGGCTGTATTG+CGG + chr7.3:1375902-1375921 None:intergenic 50.0%
ACAAGTCTCCAAGTGGGTGG+TGG + chr7.3:1375153-1375172 None:intergenic 55.0%
ATGAGGAGGCTCATGGTGGT+GGG + chr7.3:1375274-1375293 None:intergenic 55.0%
CTCGAGTCTCTAGCAGATGC+TGG + chr7.3:1375913-1375932 None:intergenic 55.0%
GACTATGAGGAGGCTCATGG+TGG + chr7.3:1375278-1375297 None:intergenic 55.0%
GGTACCAACGGAAGCTTCCT+CGG + chr7.3:1377127-1377146 None:intergenic 55.0%
GTTCAACACCACCACCCACT+TGG - chr7.3:1375142-1375161 MS.gene050605:CDS 55.0%
TAGCCGGCGTCTTGAAGAAC+AGG - chr7.3:1376378-1376397 MS.gene050605:intron 55.0%
TATGAGGAGGCTCATGGTGG+TGG + chr7.3:1375275-1375294 None:intergenic 55.0%
TTTGCCGAGGAAGCTTCCGT+TGG - chr7.3:1377120-1377139 MS.gene050605:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 1375042 1377620 1375042 ID=MS.gene050605
chr7.3 mRNA 1375042 1377620 1375042 ID=MS.gene050605.t1;Parent=MS.gene050605
chr7.3 exon 1377345 1377620 1377345 ID=MS.gene050605.t1.exon1;Parent=MS.gene050605.t1
chr7.3 CDS 1377345 1377620 1377345 ID=cds.MS.gene050605.t1;Parent=MS.gene050605.t1
chr7.3 exon 1376627 1376752 1376627 ID=MS.gene050605.t1.exon2;Parent=MS.gene050605.t1
chr7.3 CDS 1376627 1376752 1376627 ID=cds.MS.gene050605.t1;Parent=MS.gene050605.t1
chr7.3 exon 1375042 1376328 1375042 ID=MS.gene050605.t1.exon3;Parent=MS.gene050605.t1
chr7.3 CDS 1375042 1376328 1375042 ID=cds.MS.gene050605.t1;Parent=MS.gene050605.t1
Gene Sequence

>MS.gene050605

ATGGAAAGAAGAGAAAAATGTATGGAGAAAAGGGAAGAAGGAATAATGGTGGAAAAGTTGAAACTTTTGGAGAAGAGAGGAGGAAGAGGAAGGTCTTCAAGTTCAACACCACCACCCACTTGGAGACTTGTTGACTTTCCTTCTTCTCATCAACAAGAGTTTCTCAACTTTTCCACTTCAAAAACACTCTCTGCAAGAAATCTCTGTGCTAAACTCTGGGAATTTCACTCCCACCACCATGAGCCTCCTCATAGTCATAGTAGTCCCTCTCACCAGGTACTTTTCTTGTTTTGTATCCATTTTCAATTAATTTTTTTTTTTAATGACATTTTTGGTAAAATTATTTATGTACTAAATTTCTTCTTATCTTTTTGTATACTGTTTTGTTTTCAGATGCCTATAATTGGTAATTTCTGTTTCAGCTTTAAAAGTTGGTGACTTTGGTTTGGCTTGTAGTTCTATATATCAATTAAGAGGGTCATGTAGATTTGTATGAATAACATTATAATTTCATAGTTTACATTATGAAGTTGATCTGCTCCTTGATTTTTCATCAGAGGAATTTTTTTCTGAACCTTTTCGAATTAACTATCCCTAATGTTGATGTTAAAGAATGAAATAAATTTGAATAGGTTACATTATGAATTATGATAACGAGCGCCTTATGAAGAGAGCTGACGTACTATCTTATATCCAATGTCCATATAATTGTGTTCTTCCTTTATTGATAGCTGAAAGACTTTCAATTCAAACATTAATTCCTAAAGTCAGGATTATGTTTGATGCATTTTGTAAACTAATGTTTGATGACATTTTTATATATATTTTGAATTTCAACTGCTGGTTCTGACTTTGTTCCGCAATACAGCCAGCATCTGCTAGAGACTCGAGAAGACGTGTTCAAGCATCAGTTGTTCAGCACGGTAAATCAGTCGACAGAAATTGTTCGGCTCTACAGTCTGTGTCCCCTTCTAATTGCCTTAGCTCAATGGAAGTAAGTAAAATACATAGATTCCATTTGAATCTCAAGAAGTTTATGATTTTTAACAAGTGAAGTCATCAAAAAAATAAATATGAATGAATGAACATGTAAATACGAATTTGAACAAAGATATGAAGCATTAAAATTGATTTGAGGAAAATCTCCATGAGGGATTTATCGTCGATGATCCTTCTGAGGCATTTTTAATGAATGGCTTTAAAAGTGTATGTAAACTAGATGGTTTTTAAAATGATACTTTTACCCTTTCATCCGGTATAAAAAGATGAATGTGTTATTTTTCGTAAAACAGGTTACACAAGAGTCATCCAGAGAGTTAGTCAAGGTTCTCAAACGTAGCCGGCGTCTTGAAGAACAGGATGCGTCGAATATAGCAATAGTGAAAGCTCTGATAGTGGAACTAGATCTTTCTCAAACACAGGTAAAAGAGTTACTACAAGAAAAGAAAATGAATAAGCAGGAAATGGAGAGCTTAATGAAGAAAATAACAGAAGACAAACTTGTTAACAAGAACAAACAGCATGAAAAGATCAAAGCTGTAGTTCAATCAGTCAAGGAAGAGATTGAAGATGAAAGGAGGTTAAGAAAGCATTCAGAAAGCCTGTATCAGAAGCTGGCTAGTGAGCTTTATGAAGTGAAGTCTTTGTTACGTGGTACTCTGAGAGATCTCGAAAGAGAAAAAAAAGAAAGGATCCTTTTGGAGAATTTGTGTGATGATTTTGCCAAAGGAGTAAGAGATTATGAACATGAATTACGTTCTATTATGCATAATAGTGCGGATAAGGATCGCATTAATGGTGATAGCCTTGATAGGCTAATACTTCACATTTCAGAGGCTTGGCTTGACGAGCGCACACAAATGAAGCAAGTTCAAGATGGTATTGGTAGTGATCTCCTAGAGACACATTCAATAGTTGACAAGTTACGTGTTGATATTGAAACATTTCTTCTTACAAAAAGATCTATTGACTTGAAGAGATATAATTTCCCCTCCATTAAAGAAGTCAAGGAAATTCACCCTTGCCTACCTTCATTGGATTCCTTTCAACTAAAGGAGACAATAAATTCACCTCATAATTTTGCCGAGGAAGCTTCCGTTGGTACCAACAAGTTTGAACAGAAAAGGACTGCGGAGAACAGACTTAACAAGTGCTTTGTTGAGGGGAAATCAAGTGAAATTGGAAGGTACAGCAGAGATCTATTAAATGCTCCTAGAGAATCAACTTTGTGTGAGACCGTACAAAGTCCACCAGAAAATGATAGGTGCAGGACCAAGGGAATTAATTCATGTCACAGCCTTGAACAGTTAGTTGGAAACAGTTCTTTGTCATCAGAAGGTGATAAGGTATATCCTGAGAGTATTTGCAGGGAAGATGCATGTGTCCATTCTGCAGTTACAGTTAAGGGTAGTCCTGTTAAACAGTCGAAAAAAACATTGTTTGTACCCGATTTCAACATGTCTCAGTCTACTAACAAATTGCCTAGGGGAGTAAAAGACAATACATTTATGGCAAAACTGCTTGAAGCAAGGTTAGAGGATCATAAATCTCGCTCTAAGCCTAGTAAAAGCTCTTTTTGA

Protein sequence

>MS.gene050605.t1

MERREKCMEKREEGIMVEKLKLLEKRGGRGRSSSSTPPPTWRLVDFPSSHQQEFLNFSTSKTLSARNLCAKLWEFHSHHHEPPHSHSSPSHQPASARDSRRRVQASVVQHGKSVDRNCSALQSVSPSNCLSSMEVTQESSRELVKVLKRSRRLEEQDASNIAIVKALIVELDLSQTQVKELLQEKKMNKQEMESLMKKITEDKLVNKNKQHEKIKAVVQSVKEEIEDERRLRKHSESLYQKLASELYEVKSLLRGTLRDLEREKKERILLENLCDDFAKGVRDYEHELRSIMHNSADKDRINGDSLDRLILHISEAWLDERTQMKQVQDGIGSDLLETHSIVDKLRVDIETFLLTKRSIDLKRYNFPSIKEVKEIHPCLPSLDSFQLKETINSPHNFAEEASVGTNKFEQKRTAENRLNKCFVEGKSSEIGRYSRDLLNAPRESTLCETVQSPPENDRCRTKGINSCHSLEQLVGNSSLSSEGDKVYPESICREDACVHSAVTVKGSPVKQSKKTLFVPDFNMSQSTNKLPRGVKDNTFMAKLLEARLEDHKSRSKPSKSSF