Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06783.t1 | XP_013461496.1 | 92.4 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 1.00E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06783.t1 | Q9FPR6 | 72.3 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 6.3e-47 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06783.t1 | A0A072V1G2 | 92.4 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 7.3e-73 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06783.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049408 | MS.gene06783 | 0.983665 | 2.28E-158 | -1.69E-46 |
| MS.gene050584 | MS.gene06783 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene050585 | MS.gene06783 | 0.800545 | 1.37E-48 | -1.69E-46 |
| MS.gene051789 | MS.gene06783 | 0.831739 | 1.41E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06783.t1 | MTR_3g093860 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.73e-103 | 292 |
| MS.gene06783.t1 | MTR_1g049100 | 60.448 | 134 | 52 | 1 | 14 | 146 | 4 | 137 | 6.02e-55 | 171 |
| MS.gene06783.t1 | MTR_3g078613 | 60.769 | 130 | 50 | 1 | 19 | 148 | 24 | 152 | 9.77e-55 | 171 |
| MS.gene06783.t1 | MTR_3g078613 | 61.069 | 131 | 49 | 2 | 19 | 148 | 24 | 153 | 1.79e-53 | 168 |
| MS.gene06783.t1 | MTR_5g036480 | 60.606 | 132 | 47 | 2 | 19 | 146 | 17 | 147 | 4.98e-52 | 165 |
| MS.gene06783.t1 | MTR_8g038620 | 57.353 | 136 | 51 | 1 | 19 | 147 | 10 | 145 | 1.11e-51 | 162 |
| MS.gene06783.t1 | MTR_4g106590 | 60.305 | 131 | 50 | 2 | 19 | 148 | 27 | 156 | 1.64e-51 | 163 |
| MS.gene06783.t1 | MTR_7g490310 | 59.091 | 132 | 46 | 2 | 19 | 142 | 10 | 141 | 1.52e-50 | 162 |
| MS.gene06783.t1 | MTR_3g088630 | 53.191 | 141 | 48 | 2 | 19 | 142 | 23 | 162 | 6.96e-46 | 150 |
| MS.gene06783.t1 | MTR_3g015490 | 52.143 | 140 | 50 | 3 | 19 | 147 | 5 | 138 | 5.93e-43 | 140 |
| MS.gene06783.t1 | MTR_6g007460 | 40.659 | 182 | 54 | 3 | 19 | 147 | 12 | 192 | 6.62e-37 | 126 |
| MS.gene06783.t1 | MTR_2g050020 | 91.379 | 58 | 4 | 1 | 1 | 58 | 35 | 91 | 9.71e-31 | 107 |
| MS.gene06783.t1 | MTR_4g051330 | 56.863 | 51 | 22 | 0 | 97 | 147 | 77 | 127 | 3.71e-16 | 71.2 |
| MS.gene06783.t1 | MTR_4g061360 | 34.959 | 123 | 70 | 1 | 20 | 142 | 91 | 203 | 8.56e-16 | 73.9 |
| MS.gene06783.t1 | MTR_1g067110 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 6.41e-15 | 71.2 |
| MS.gene06783.t1 | MTR_1g067110 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 7.80e-15 | 70.9 |
| MS.gene06783.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.26e-14 | 68.2 |
| MS.gene06783.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.27e-14 | 68.2 |
| MS.gene06783.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.41e-14 | 68.2 |
| MS.gene06783.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.70e-14 | 68.2 |
| MS.gene06783.t1 | MTR_8g024260 | 30.894 | 123 | 75 | 1 | 20 | 142 | 38 | 150 | 3.14e-13 | 66.2 |
| MS.gene06783.t1 | MTR_7g118260 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 4.29e-13 | 65.9 |
| MS.gene06783.t1 | MTR_7g118260 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 5.02e-13 | 65.9 |
| MS.gene06783.t1 | MTR_8g079940 | 28.906 | 128 | 78 | 2 | 20 | 147 | 31 | 145 | 9.94e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06783.t1 | AT3G56380 | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.34e-64 | 194 |
| MS.gene06783.t1 | AT3G56380 | 72.519 | 131 | 35 | 1 | 19 | 148 | 21 | 151 | 4.69e-63 | 191 |
| MS.gene06783.t1 | AT2G40670 | 70.896 | 134 | 33 | 2 | 19 | 148 | 30 | 161 | 7.07e-63 | 191 |
| MS.gene06783.t1 | AT2G40670 | 71.111 | 135 | 32 | 3 | 19 | 148 | 30 | 162 | 1.45e-61 | 187 |
| MS.gene06783.t1 | AT1G10470 | 61.719 | 128 | 48 | 1 | 19 | 146 | 21 | 147 | 3.30e-53 | 169 |
| MS.gene06783.t1 | AT1G59940 | 58.647 | 133 | 54 | 1 | 14 | 146 | 29 | 160 | 4.81e-53 | 168 |
| MS.gene06783.t1 | AT1G10470 | 61.719 | 128 | 48 | 1 | 19 | 146 | 35 | 161 | 6.13e-53 | 168 |
| MS.gene06783.t1 | AT1G59940 | 58.647 | 133 | 54 | 1 | 14 | 146 | 121 | 252 | 7.17e-52 | 167 |
| MS.gene06783.t1 | AT3G48100 | 57.364 | 129 | 55 | 0 | 19 | 147 | 26 | 154 | 1.29e-51 | 162 |
| MS.gene06783.t1 | AT5G62920 | 58.955 | 134 | 54 | 1 | 19 | 152 | 26 | 158 | 3.10e-51 | 162 |
| MS.gene06783.t1 | AT3G57040 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.22e-51 | 162 |
| MS.gene06783.t1 | AT3G57040 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.22e-51 | 162 |
| MS.gene06783.t1 | AT2G41310 | 51.724 | 145 | 63 | 2 | 10 | 147 | 1 | 145 | 2.24e-50 | 161 |
| MS.gene06783.t1 | AT1G74890 | 59.091 | 132 | 53 | 1 | 19 | 150 | 19 | 149 | 5.77e-50 | 159 |
| MS.gene06783.t1 | AT1G19050 | 58.015 | 131 | 52 | 2 | 19 | 148 | 25 | 153 | 3.33e-49 | 157 |
| MS.gene06783.t1 | AT1G10470 | 50.000 | 74 | 33 | 3 | 75 | 146 | 14 | 85 | 3.10e-15 | 69.7 |
| MS.gene06783.t1 | AT5G24470 | 31.452 | 124 | 73 | 2 | 20 | 142 | 52 | 164 | 6.86e-14 | 68.2 |
| MS.gene06783.t1 | AT5G02810 | 31.707 | 123 | 74 | 1 | 20 | 142 | 80 | 192 | 2.07e-12 | 64.3 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.24e-12 | 63.9 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.24e-12 | 63.9 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.24e-12 | 63.9 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.25e-12 | 63.9 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.14e-12 | 62.8 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.14e-12 | 62.8 |
| MS.gene06783.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.14e-12 | 62.8 |
| MS.gene06783.t1 | AT2G46790 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 1.85e-11 | 61.2 |
| MS.gene06783.t1 | AT2G46790 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 2.23e-11 | 61.2 |
| MS.gene06783.t1 | AT5G07210 | 30.081 | 123 | 72 | 3 | 20 | 142 | 18 | 126 | 3.21e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAGGCATTGGAGTATT+TGG | 0.158019 | 3.3:-78131041 | MS.gene06783:CDS |
| GACAGGCCAGCTGATGAATT+TGG | 0.201243 | 3.3:-78130420 | MS.gene06783:CDS |
| ACAGTGACAACTGCTGAAAA+TGG | 0.248549 | 3.3:-78131064 | MS.gene06783:intron |
| CTGAAGGCATTGGAGTATTT+GGG | 0.249714 | 3.3:-78131040 | MS.gene06783:CDS |
| GTAGGGACCCAAAGTGAATT+TGG | 0.331645 | 3.3:-78130844 | MS.gene06783:intron |
| AATTACTTGTTGATCCTTGT+TGG | 0.359191 | 3.3:+78130596 | None:intergenic |
| TCAAAGTGGGTGATGGAAAA+TGG | 0.361841 | 3.3:-78131335 | MS.gene06783:CDS |
| TGAGTTGCTTAAGAAAATTA+AGG | 0.374516 | 3.3:-78130784 | MS.gene06783:intron |
| ACAGGCCAGCTGATGAATTT+GGG | 0.393986 | 3.3:-78130419 | MS.gene06783:CDS |
| TACTGCATGCCAGGGATGAC+TGG | 0.411671 | 3.3:-78130810 | MS.gene06783:CDS |
| GTGATGACCAAATTCACTTT+GGG | 0.424646 | 3.3:+78130837 | None:intergenic |
| ATCACAGACTACTGCATGCC+AGG | 0.428078 | 3.3:-78130819 | MS.gene06783:CDS |
| TTCTTCTTCAAAGTGGGTGA+TGG | 0.456607 | 3.3:-78131342 | MS.gene06783:CDS |
| CTGATTCTTCTTCTTCAAAG+TGG | 0.467692 | 3.3:-78131349 | MS.gene06783:CDS |
| TGATTCTTCTTCTTCAAAGT+GGG | 0.471982 | 3.3:-78131348 | MS.gene06783:CDS |
| ACCTTCCCAAATTCATCAGC+TGG | 0.476038 | 3.3:+78130414 | None:intergenic |
| TCAGATGACATGATCACAAC+AGG | 0.480037 | 3.3:+78130626 | None:intergenic |
| TCAGCAATCATCTGTGATGA+AGG | 0.481432 | 3.3:-78130654 | MS.gene06783:intron |
| TGTGATGACCAAATTCACTT+TGG | 0.486577 | 3.3:+78130836 | None:intergenic |
| GAACAGAACACTTTGGAGAA+TGG | 0.490659 | 3.3:-78131004 | MS.gene06783:CDS |
| CAGTGACAACTGCTGAAAAT+GGG | 0.502968 | 3.3:-78131063 | MS.gene06783:CDS |
| TTTACATCAGATTGTTTGAG+AGG | 0.513388 | 3.3:+78130449 | None:intergenic |
| TGAAAATGGGCTGAAGGCAT+TGG | 0.515465 | 3.3:-78131050 | MS.gene06783:CDS |
| AACTCATAGCCAGTCATCCC+TGG | 0.516855 | 3.3:+78130801 | None:intergenic |
| AAAAGCAGGTGTATGGAAGA+AGG | 0.535716 | 3.3:-78130494 | MS.gene06783:intron |
| AAAGCAGGTGTATGGAAGAA+GGG | 0.542181 | 3.3:-78130493 | MS.gene06783:intron |
| AACTGCTGAAAATGGGCTGA+AGG | 0.568007 | 3.3:-78131056 | MS.gene06783:CDS |
| CTCAAGAATTCCTCTTGCAA+AGG | 0.589496 | 3.3:-78131248 | MS.gene06783:intron |
| GCCAGCTGATGAATTTGGGA+AGG | 0.598518 | 3.3:-78130415 | MS.gene06783:CDS |
| AAGCAGGTGTATGGAAGAAG+GGG | 0.612241 | 3.3:-78130492 | MS.gene06783:intron |
| TCACAGACTACTGCATGCCA+GGG | 0.612620 | 3.3:-78130818 | MS.gene06783:CDS |
| CTTTGCAAGAGGAATTCTTG+AGG | 0.621330 | 3.3:+78131249 | None:intergenic |
| TCTGATGTAAAACAACTGAC+AGG | 0.621647 | 3.3:-78130437 | MS.gene06783:CDS |
| TCATCAACAGCAAGAACATG+AGG | 0.625979 | 3.3:+78131305 | None:intergenic |
| AAGTGGTGAACAGAACACTT+TGG | 0.626039 | 3.3:-78131011 | MS.gene06783:CDS |
| GAGTATTTGGGCTTGTCAAG+TGG | 0.627865 | 3.3:-78131028 | MS.gene06783:CDS |
| GGTGTACGTACCTTTGCAAG+AGG | 0.636893 | 3.3:+78131238 | None:intergenic |
| GCAATCATCTGTGATGAAGG+AGG | 0.667691 | 3.3:-78130651 | MS.gene06783:CDS |
| CATCTGAGAATATACCAACA+AGG | 0.683899 | 3.3:-78130610 | MS.gene06783:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATATAACAGAAAA+TGG | + | chr3.3:78130558-78130577 | None:intergenic | 10.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | + | chr3.3:78131209-78131228 | None:intergenic | 15.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | + | chr3.3:78131086-78131105 | None:intergenic | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | + | chr3.3:78131085-78131104 | None:intergenic | 20.0% |
| !!! | GATGTTTGATGTTTTTTTTT+TGG | - | chr3.3:78130617-78130636 | MS.gene06783:CDS | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | - | chr3.3:78130629-78130648 | MS.gene06783:CDS | 20.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | + | chr3.3:78131087-78131106 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | - | chr3.3:78130972-78130991 | MS.gene06783:intron | 25.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | + | chr3.3:78130810-78130829 | None:intergenic | 25.0% |
| AAATAATATCCAATTTGGGG+TGG | + | chr3.3:78131082-78131101 | None:intergenic | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | + | chr3.3:78130644-78130663 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | - | chr3.3:78130651-78130670 | MS.gene06783:CDS | 30.0% | |
| TGATTCTTCTTCTTCAAAGT+GGG | - | chr3.3:78130408-78130427 | MS.gene06783:CDS | 30.0% | |
| TTTACATCAGATTGTTTGAG+AGG | + | chr3.3:78131310-78131329 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | + | chr3.3:78131163-78131182 | None:intergenic | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | - | chr3.3:78130895-78130914 | MS.gene06783:intron | 30.0% |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | - | chr3.3:78130894-78130913 | MS.gene06783:intron | 30.0% |
| AAAATGGTTGAGTGAGAGAT+AGG | + | chr3.3:78130542-78130561 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | - | chr3.3:78131146-78131165 | MS.gene06783:intron | 35.0% | |
| CTGATTCTTCTTCTTCAAAG+TGG | - | chr3.3:78130407-78130426 | MS.gene06783:CDS | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | - | chr3.3:78130650-78130669 | MS.gene06783:CDS | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | + | chr3.3:78130922-78130941 | None:intergenic | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | - | chr3.3:78131319-78131338 | MS.gene06783:CDS | 35.0% | |
| TGCTAACAAGTGACTATTTC+TGG | - | chr3.3:78130884-78130903 | MS.gene06783:intron | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | + | chr3.3:78130923-78130942 | None:intergenic | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | - | chr3.3:78130662-78130681 | MS.gene06783:intron | 35.0% |
| AAAAGCAGGTGTATGGAAGA+AGG | - | chr3.3:78131262-78131281 | MS.gene06783:CDS | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | - | chr3.3:78131263-78131282 | MS.gene06783:CDS | 40.0% | |
| AAGTGGTGAACAGAACACTT+TGG | - | chr3.3:78130745-78130764 | MS.gene06783:intron | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | - | chr3.3:78130692-78130711 | MS.gene06783:intron | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | + | chr3.3:78131241-78131260 | None:intergenic | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | - | chr3.3:78130693-78130712 | MS.gene06783:intron | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | - | chr3.3:78131248-78131267 | MS.gene06783:intron | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | - | chr3.3:78130508-78130527 | MS.gene06783:intron | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | + | chr3.3:78130510-78130529 | None:intergenic | 40.0% | |
| TAACACTAACCACCCCAAAT+TGG | - | chr3.3:78131070-78131089 | MS.gene06783:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | + | chr3.3:78131133-78131152 | None:intergenic | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | - | chr3.3:78131102-78131121 | MS.gene06783:intron | 40.0% | |
| TCATCAACAGCAAGAACATG+AGG | + | chr3.3:78130454-78130473 | None:intergenic | 40.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | - | chr3.3:78130414-78130433 | MS.gene06783:CDS | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | - | chr3.3:78130752-78130771 | MS.gene06783:intron | 40.0% |
| !! | CTGAAGGCATTGGAGTATTT+GGG | - | chr3.3:78130716-78130735 | MS.gene06783:intron | 40.0% |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | - | chr3.3:78130421-78130440 | MS.gene06783:CDS | 40.0% |
| AAGCAGGTGTATGGAAGAAG+GGG | - | chr3.3:78131264-78131283 | MS.gene06783:CDS | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | - | chr3.3:78131337-78131356 | MS.gene06783:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | + | chr3.3:78131345-78131364 | None:intergenic | 45.0% | |
| GAGTATTTGGGCTTGTCAAG+TGG | - | chr3.3:78130728-78130747 | MS.gene06783:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | - | chr3.3:78131105-78131124 | MS.gene06783:intron | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | - | chr3.3:78130912-78130931 | MS.gene06783:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | - | chr3.3:78131255-78131274 | MS.gene06783:CDS | 45.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | - | chr3.3:78130700-78130719 | MS.gene06783:intron | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | - | chr3.3:78130715-78130734 | MS.gene06783:intron | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | - | chr3.3:78130706-78130725 | MS.gene06783:intron | 45.0% |
| AACTCATAGCCAGTCATCCC+TGG | + | chr3.3:78130958-78130977 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | - | chr3.3:78130937-78130956 | MS.gene06783:intron | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | - | chr3.3:78131336-78131355 | MS.gene06783:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | - | chr3.3:78131341-78131360 | MS.gene06783:CDS | 50.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | + | chr3.3:78130521-78130540 | None:intergenic | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | - | chr3.3:78130938-78130957 | MS.gene06783:intron | 50.0% | |
| TACTGCATGCCAGGGATGAC+TGG | - | chr3.3:78130946-78130965 | MS.gene06783:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78130400 | 78131378 | 78130400 | ID=MS.gene06783 |
| chr3.3 | mRNA | 78130400 | 78131378 | 78130400 | ID=MS.gene06783.t1;Parent=MS.gene06783 |
| chr3.3 | exon | 78131249 | 78131378 | 78131249 | ID=MS.gene06783.t1.exon1;Parent=MS.gene06783.t1 |
| chr3.3 | CDS | 78131249 | 78131378 | 78131249 | ID=cds.MS.gene06783.t1;Parent=MS.gene06783.t1 |
| chr3.3 | exon | 78131003 | 78131082 | 78131003 | ID=MS.gene06783.t1.exon2;Parent=MS.gene06783.t1 |
| chr3.3 | CDS | 78131003 | 78131082 | 78131003 | ID=cds.MS.gene06783.t1;Parent=MS.gene06783.t1 |
| chr3.3 | exon | 78130785 | 78130862 | 78130785 | ID=MS.gene06783.t1.exon3;Parent=MS.gene06783.t1 |
| chr3.3 | CDS | 78130785 | 78130862 | 78130785 | ID=cds.MS.gene06783.t1;Parent=MS.gene06783.t1 |
| chr3.3 | exon | 78130602 | 78130672 | 78130602 | ID=MS.gene06783.t1.exon4;Parent=MS.gene06783.t1 |
| chr3.3 | CDS | 78130602 | 78130672 | 78130602 | ID=cds.MS.gene06783.t1;Parent=MS.gene06783.t1 |
| chr3.3 | exon | 78130400 | 78130508 | 78130400 | ID=MS.gene06783.t1.exon5;Parent=MS.gene06783.t1 |
| chr3.3 | CDS | 78130400 | 78130508 | 78130400 | ID=cds.MS.gene06783.t1;Parent=MS.gene06783.t1 |
| Gene Sequence |
| Protein sequence |
