Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049408.t1 | XP_013461496.1 | 92.4 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 1.00E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049408.t1 | Q9FPR6 | 72.3 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 6.3e-47 | 188.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049408.t1 | A0A072V1G2 | 92.4 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 7.3e-73 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049408.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049408 | MS.gene050584 | 0.812233 | 4.70E-51 | -1.69E-46 |
| MS.gene049408 | MS.gene051789 | 0.813268 | 2.79E-51 | -1.69E-46 |
| MS.gene049408 | MS.gene06538 | 0.981158 | 6.51E-152 | -1.69E-46 |
| MS.gene049408 | MS.gene06783 | 0.983665 | 2.28E-158 | -1.69E-46 |
| MS.gene049408 | MS.gene22856 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene049408 | MS.gene41839 | 0.803495 | 3.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049408.t1 | MTR_3g093860 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.73e-103 | 292 |
| MS.gene049408.t1 | MTR_1g049100 | 60.448 | 134 | 52 | 1 | 14 | 146 | 4 | 137 | 6.02e-55 | 171 |
| MS.gene049408.t1 | MTR_3g078613 | 60.769 | 130 | 50 | 1 | 19 | 148 | 24 | 152 | 9.77e-55 | 171 |
| MS.gene049408.t1 | MTR_3g078613 | 61.069 | 131 | 49 | 2 | 19 | 148 | 24 | 153 | 1.79e-53 | 168 |
| MS.gene049408.t1 | MTR_5g036480 | 60.606 | 132 | 47 | 2 | 19 | 146 | 17 | 147 | 4.98e-52 | 165 |
| MS.gene049408.t1 | MTR_8g038620 | 57.353 | 136 | 51 | 1 | 19 | 147 | 10 | 145 | 1.11e-51 | 162 |
| MS.gene049408.t1 | MTR_4g106590 | 60.305 | 131 | 50 | 2 | 19 | 148 | 27 | 156 | 1.64e-51 | 163 |
| MS.gene049408.t1 | MTR_7g490310 | 59.091 | 132 | 46 | 2 | 19 | 142 | 10 | 141 | 1.52e-50 | 162 |
| MS.gene049408.t1 | MTR_3g088630 | 53.191 | 141 | 48 | 2 | 19 | 142 | 23 | 162 | 6.96e-46 | 150 |
| MS.gene049408.t1 | MTR_3g015490 | 52.143 | 140 | 50 | 3 | 19 | 147 | 5 | 138 | 5.93e-43 | 140 |
| MS.gene049408.t1 | MTR_6g007460 | 40.659 | 182 | 54 | 3 | 19 | 147 | 12 | 192 | 6.62e-37 | 126 |
| MS.gene049408.t1 | MTR_2g050020 | 91.379 | 58 | 4 | 1 | 1 | 58 | 35 | 91 | 9.71e-31 | 107 |
| MS.gene049408.t1 | MTR_4g051330 | 56.863 | 51 | 22 | 0 | 97 | 147 | 77 | 127 | 3.71e-16 | 71.2 |
| MS.gene049408.t1 | MTR_4g061360 | 34.959 | 123 | 70 | 1 | 20 | 142 | 91 | 203 | 8.56e-16 | 73.9 |
| MS.gene049408.t1 | MTR_1g067110 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 6.41e-15 | 71.2 |
| MS.gene049408.t1 | MTR_1g067110 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 7.80e-15 | 70.9 |
| MS.gene049408.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.26e-14 | 68.2 |
| MS.gene049408.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.27e-14 | 68.2 |
| MS.gene049408.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.41e-14 | 68.2 |
| MS.gene049408.t1 | MTR_3g092780 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 7.70e-14 | 68.2 |
| MS.gene049408.t1 | MTR_8g024260 | 30.894 | 123 | 75 | 1 | 20 | 142 | 38 | 150 | 3.14e-13 | 66.2 |
| MS.gene049408.t1 | MTR_7g118260 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 4.29e-13 | 65.9 |
| MS.gene049408.t1 | MTR_7g118260 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 5.02e-13 | 65.9 |
| MS.gene049408.t1 | MTR_8g079940 | 28.906 | 128 | 78 | 2 | 20 | 147 | 31 | 145 | 9.94e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049408.t1 | AT3G56380 | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.34e-64 | 194 |
| MS.gene049408.t1 | AT3G56380 | 72.519 | 131 | 35 | 1 | 19 | 148 | 21 | 151 | 4.69e-63 | 191 |
| MS.gene049408.t1 | AT2G40670 | 70.896 | 134 | 33 | 2 | 19 | 148 | 30 | 161 | 7.07e-63 | 191 |
| MS.gene049408.t1 | AT2G40670 | 71.111 | 135 | 32 | 3 | 19 | 148 | 30 | 162 | 1.45e-61 | 187 |
| MS.gene049408.t1 | AT1G10470 | 61.719 | 128 | 48 | 1 | 19 | 146 | 21 | 147 | 3.30e-53 | 169 |
| MS.gene049408.t1 | AT1G59940 | 58.647 | 133 | 54 | 1 | 14 | 146 | 29 | 160 | 4.81e-53 | 168 |
| MS.gene049408.t1 | AT1G10470 | 61.719 | 128 | 48 | 1 | 19 | 146 | 35 | 161 | 6.13e-53 | 168 |
| MS.gene049408.t1 | AT1G59940 | 58.647 | 133 | 54 | 1 | 14 | 146 | 121 | 252 | 7.17e-52 | 167 |
| MS.gene049408.t1 | AT3G48100 | 57.364 | 129 | 55 | 0 | 19 | 147 | 26 | 154 | 1.29e-51 | 162 |
| MS.gene049408.t1 | AT5G62920 | 58.955 | 134 | 54 | 1 | 19 | 152 | 26 | 158 | 3.10e-51 | 162 |
| MS.gene049408.t1 | AT3G57040 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.22e-51 | 162 |
| MS.gene049408.t1 | AT3G57040 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.22e-51 | 162 |
| MS.gene049408.t1 | AT2G41310 | 51.724 | 145 | 63 | 2 | 10 | 147 | 1 | 145 | 2.24e-50 | 161 |
| MS.gene049408.t1 | AT1G74890 | 59.091 | 132 | 53 | 1 | 19 | 150 | 19 | 149 | 5.77e-50 | 159 |
| MS.gene049408.t1 | AT1G19050 | 58.015 | 131 | 52 | 2 | 19 | 148 | 25 | 153 | 3.33e-49 | 157 |
| MS.gene049408.t1 | AT1G10470 | 50.000 | 74 | 33 | 3 | 75 | 146 | 14 | 85 | 3.10e-15 | 69.7 |
| MS.gene049408.t1 | AT5G24470 | 31.452 | 124 | 73 | 2 | 20 | 142 | 52 | 164 | 6.86e-14 | 68.2 |
| MS.gene049408.t1 | AT5G02810 | 31.707 | 123 | 74 | 1 | 20 | 142 | 80 | 192 | 2.07e-12 | 64.3 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.24e-12 | 63.9 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.24e-12 | 63.9 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.24e-12 | 63.9 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.25e-12 | 63.9 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.14e-12 | 62.8 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.14e-12 | 62.8 |
| MS.gene049408.t1 | AT5G60100 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.14e-12 | 62.8 |
| MS.gene049408.t1 | AT2G46790 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 1.85e-11 | 61.2 |
| MS.gene049408.t1 | AT2G46790 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 2.23e-11 | 61.2 |
| MS.gene049408.t1 | AT5G07210 | 30.081 | 123 | 72 | 3 | 20 | 142 | 18 | 126 | 3.21e-11 | 60.8 |
Find 39 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAGGCATTGGAGTATT+TGG | 0.158019 | 3.1:-75092325 | MS.gene049408:CDS |
| GACAGGCCAGCTGATGAATT+TGG | 0.201243 | 3.1:-75091704 | MS.gene049408:CDS |
| ACAGTGACAACTGCTGAAAA+TGG | 0.248549 | 3.1:-75092348 | MS.gene049408:intron |
| CTGAAGGCATTGGAGTATTT+GGG | 0.249714 | 3.1:-75092324 | MS.gene049408:CDS |
| GTAGGGACCCAAAGTGAATT+TGG | 0.331645 | 3.1:-75092128 | MS.gene049408:intron |
| AATTACTTGTTGATCCTTGT+TGG | 0.359191 | 3.1:+75091880 | None:intergenic |
| TCAAAGTGGGTGATGGAAAA+TGG | 0.361841 | 3.1:-75092647 | MS.gene049408:CDS |
| TGAGTTGCTTAAGAAAATTA+AGG | 0.374516 | 3.1:-75092068 | MS.gene049408:intron |
| ACAGGCCAGCTGATGAATTT+GGG | 0.393986 | 3.1:-75091703 | MS.gene049408:CDS |
| TACTGCATGCCAGGGATGAC+TGG | 0.411671 | 3.1:-75092094 | MS.gene049408:CDS |
| GTGATGACCAAATTCACTTT+GGG | 0.424646 | 3.1:+75092121 | None:intergenic |
| ATCACAGACTACTGCATGCC+AGG | 0.428078 | 3.1:-75092103 | MS.gene049408:CDS |
| TTCTTCTTCAAAGTGGGTGA+TGG | 0.456607 | 3.1:-75092654 | MS.gene049408:CDS |
| CTGATTCTTCTTCTTCAAAG+TGG | 0.467692 | 3.1:-75092661 | MS.gene049408:CDS |
| TGATTCTTCTTCTTCAAAGT+GGG | 0.471982 | 3.1:-75092660 | MS.gene049408:CDS |
| ACCTTCCCAAATTCATCAGC+TGG | 0.476038 | 3.1:+75091698 | None:intergenic |
| TCAGATGACATGATCACAAC+AGG | 0.480037 | 3.1:+75091910 | None:intergenic |
| TCAGCAATCATCTGTGATGA+AGG | 0.481432 | 3.1:-75091938 | MS.gene049408:intron |
| TGTGATGACCAAATTCACTT+TGG | 0.486577 | 3.1:+75092120 | None:intergenic |
| GAACAGAACACTTTGGAGAA+TGG | 0.490659 | 3.1:-75092288 | MS.gene049408:CDS |
| CAGTGACAACTGCTGAAAAT+GGG | 0.502968 | 3.1:-75092347 | MS.gene049408:CDS |
| TTTACATCAGATTGTTTGAG+AGG | 0.513388 | 3.1:+75091733 | None:intergenic |
| TGAAAATGGGCTGAAGGCAT+TGG | 0.515465 | 3.1:-75092334 | MS.gene049408:CDS |
| AACTCATAGCCAGTCATCCC+TGG | 0.516855 | 3.1:+75092085 | None:intergenic |
| AAAAGCAGGTGTATGGAAGA+AGG | 0.535716 | 3.1:-75091778 | MS.gene049408:intron |
| AAAGCAGGTGTATGGAAGAA+GGG | 0.542181 | 3.1:-75091777 | MS.gene049408:intron |
| AACTGCTGAAAATGGGCTGA+AGG | 0.568007 | 3.1:-75092340 | MS.gene049408:CDS |
| CTCAAGAATTCCTCTTGCAA+AGG | 0.589496 | 3.1:-75092560 | MS.gene049408:intron |
| GCCAGCTGATGAATTTGGGA+AGG | 0.598518 | 3.1:-75091699 | MS.gene049408:CDS |
| AAGCAGGTGTATGGAAGAAG+GGG | 0.612241 | 3.1:-75091776 | MS.gene049408:intron |
| TCACAGACTACTGCATGCCA+GGG | 0.612620 | 3.1:-75092102 | MS.gene049408:CDS |
| CTTTGCAAGAGGAATTCTTG+AGG | 0.621330 | 3.1:+75092561 | None:intergenic |
| TCTGATGTAAAACAACTGAC+AGG | 0.621647 | 3.1:-75091721 | MS.gene049408:CDS |
| TCATCAACAGCAAGAACATG+AGG | 0.625979 | 3.1:+75092617 | None:intergenic |
| AAGTGGTGAACAGAACACTT+TGG | 0.626039 | 3.1:-75092295 | MS.gene049408:CDS |
| GAGTATTTGGGCTTGTCAAG+TGG | 0.627865 | 3.1:-75092312 | MS.gene049408:CDS |
| GGTGTACGTACCTTTGCAAG+AGG | 0.636893 | 3.1:+75092550 | None:intergenic |
| GCAATCATCTGTGATGAAGG+AGG | 0.667691 | 3.1:-75091935 | MS.gene049408:CDS |
| CATCTGAGAATATACCAACA+AGG | 0.683899 | 3.1:-75091894 | MS.gene049408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATATAACAGAAAA+TGG | + | chr3.1:75091842-75091861 | None:intergenic | 15.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | + | chr3.1:75092521-75092540 | None:intergenic | 15.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | + | chr3.1:75092398-75092417 | None:intergenic | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | + | chr3.1:75092397-75092416 | None:intergenic | 20.0% |
| !!! | TAAAAGTAGTTAGTTTGAAA+AGG | + | chr3.1:75091867-75091886 | None:intergenic | 20.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | - | chr3.1:75091929-75091948 | MS.gene049408:CDS | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | - | chr3.1:75091941-75091960 | MS.gene049408:intron | 20.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | + | chr3.1:75092399-75092418 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | - | chr3.1:75092284-75092303 | MS.gene049408:intron | 25.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | + | chr3.1:75092122-75092141 | None:intergenic | 25.0% |
| AAATAATATCCAATTTGGGG+TGG | + | chr3.1:75092394-75092413 | None:intergenic | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | + | chr3.1:75091956-75091975 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | - | chr3.1:75091963-75091982 | MS.gene049408:intron | 30.0% | |
| TGATTCTTCTTCTTCAAAGT+GGG | - | chr3.1:75091692-75091711 | MS.gene049408:CDS | 30.0% | |
| TTTACATCAGATTGTTTGAG+AGG | + | chr3.1:75092622-75092641 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | + | chr3.1:75092475-75092494 | None:intergenic | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | - | chr3.1:75092207-75092226 | MS.gene049408:intron | 30.0% |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | - | chr3.1:75092206-75092225 | MS.gene049408:intron | 30.0% |
| AAAAATGGCATTGTTAGTGC+TGG | + | chr3.1:75092506-75092525 | None:intergenic | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | + | chr3.1:75091826-75091845 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | - | chr3.1:75092458-75092477 | MS.gene049408:intron | 35.0% | |
| CTGATTCTTCTTCTTCAAAG+TGG | - | chr3.1:75091691-75091710 | MS.gene049408:CDS | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | - | chr3.1:75091962-75091981 | MS.gene049408:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | + | chr3.1:75092234-75092253 | None:intergenic | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | - | chr3.1:75092631-75092650 | MS.gene049408:CDS | 35.0% | |
| TGCTAACAAGTGACTATTTC+TGG | - | chr3.1:75092196-75092215 | MS.gene049408:intron | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | + | chr3.1:75092235-75092254 | None:intergenic | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | - | chr3.1:75091974-75091993 | MS.gene049408:intron | 35.0% |
| AAAAGCAGGTGTATGGAAGA+AGG | - | chr3.1:75092574-75092593 | MS.gene049408:CDS | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | - | chr3.1:75092575-75092594 | MS.gene049408:CDS | 40.0% | |
| AAGTGGTGAACAGAACACTT+TGG | - | chr3.1:75092057-75092076 | MS.gene049408:intron | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | - | chr3.1:75092004-75092023 | MS.gene049408:intron | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | + | chr3.1:75092553-75092572 | None:intergenic | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | - | chr3.1:75092005-75092024 | MS.gene049408:intron | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | - | chr3.1:75092560-75092579 | MS.gene049408:intron | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | - | chr3.1:75091792-75091811 | MS.gene049408:intron | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | + | chr3.1:75091794-75091813 | None:intergenic | 40.0% | |
| TAACACTAACCACCCCAAAT+TGG | - | chr3.1:75092382-75092401 | MS.gene049408:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | + | chr3.1:75092445-75092464 | None:intergenic | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | - | chr3.1:75092414-75092433 | MS.gene049408:intron | 40.0% | |
| TCATCAACAGCAAGAACATG+AGG | + | chr3.1:75091738-75091757 | None:intergenic | 40.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | - | chr3.1:75091698-75091717 | MS.gene049408:CDS | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | - | chr3.1:75092064-75092083 | MS.gene049408:intron | 40.0% |
| !! | CTGAAGGCATTGGAGTATTT+GGG | - | chr3.1:75092028-75092047 | MS.gene049408:intron | 40.0% |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | - | chr3.1:75091705-75091724 | MS.gene049408:CDS | 40.0% |
| AAGCAGGTGTATGGAAGAAG+GGG | - | chr3.1:75092576-75092595 | MS.gene049408:CDS | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | - | chr3.1:75092649-75092668 | MS.gene049408:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | + | chr3.1:75092657-75092676 | None:intergenic | 45.0% | |
| GAGTATTTGGGCTTGTCAAG+TGG | - | chr3.1:75092040-75092059 | MS.gene049408:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | - | chr3.1:75092417-75092436 | MS.gene049408:intron | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | - | chr3.1:75092224-75092243 | MS.gene049408:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | - | chr3.1:75092567-75092586 | MS.gene049408:CDS | 45.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | - | chr3.1:75092012-75092031 | MS.gene049408:intron | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | - | chr3.1:75092027-75092046 | MS.gene049408:intron | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | - | chr3.1:75092018-75092037 | MS.gene049408:intron | 45.0% |
| AACTCATAGCCAGTCATCCC+TGG | + | chr3.1:75092270-75092289 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | - | chr3.1:75092249-75092268 | MS.gene049408:intron | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | - | chr3.1:75092648-75092667 | MS.gene049408:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | - | chr3.1:75092653-75092672 | MS.gene049408:CDS | 50.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | + | chr3.1:75091805-75091824 | None:intergenic | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | - | chr3.1:75092250-75092269 | MS.gene049408:intron | 50.0% | |
| TACTGCATGCCAGGGATGAC+TGG | - | chr3.1:75092258-75092277 | MS.gene049408:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75091684 | 75092690 | 75091684 | ID=MS.gene049408 |
| chr3.1 | mRNA | 75091684 | 75092690 | 75091684 | ID=MS.gene049408.t1;Parent=MS.gene049408 |
| chr3.1 | exon | 75092561 | 75092690 | 75092561 | ID=MS.gene049408.t1.exon1;Parent=MS.gene049408.t1 |
| chr3.1 | CDS | 75092561 | 75092690 | 75092561 | ID=cds.MS.gene049408.t1;Parent=MS.gene049408.t1 |
| chr3.1 | exon | 75092287 | 75092366 | 75092287 | ID=MS.gene049408.t1.exon2;Parent=MS.gene049408.t1 |
| chr3.1 | CDS | 75092287 | 75092366 | 75092287 | ID=cds.MS.gene049408.t1;Parent=MS.gene049408.t1 |
| chr3.1 | exon | 75092069 | 75092146 | 75092069 | ID=MS.gene049408.t1.exon3;Parent=MS.gene049408.t1 |
| chr3.1 | CDS | 75092069 | 75092146 | 75092069 | ID=cds.MS.gene049408.t1;Parent=MS.gene049408.t1 |
| chr3.1 | exon | 75091886 | 75091956 | 75091886 | ID=MS.gene049408.t1.exon4;Parent=MS.gene049408.t1 |
| chr3.1 | CDS | 75091886 | 75091956 | 75091886 | ID=cds.MS.gene049408.t1;Parent=MS.gene049408.t1 |
| chr3.1 | exon | 75091684 | 75091792 | 75091684 | ID=MS.gene049408.t1.exon5;Parent=MS.gene049408.t1 |
| chr3.1 | CDS | 75091684 | 75091792 | 75091684 | ID=cds.MS.gene049408.t1;Parent=MS.gene049408.t1 |
| Gene Sequence |
| Protein sequence |
