Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068026.t1 | XP_003608391.2 | 95.8 | 708 | 21 | 3 | 1 | 699 | 1 | 708 | 0.00E+00 | 1211.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068026.t1 | Q93YW0 | 53.2 | 709 | 287 | 8 | 7 | 698 | 3 | 683 | 2.4e-178 | 627.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068026.t1 | G7JV40 | 95.8 | 708 | 21 | 3 | 1 | 699 | 1 | 708 | 0.0e+00 | 1211.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene068026 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene053577 | MS.gene068026 | 0.885912 | 5.40E-72 | -1.69E-46 |
| MS.gene054123 | MS.gene068026 | 0.805818 | 1.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068026.t1 | MTR_4g093590 | 95.339 | 708 | 24 | 3 | 1 | 699 | 1 | 708 | 0.0 | 1305 |
| MS.gene068026.t1 | MTR_3g078020 | 40.354 | 622 | 308 | 16 | 90 | 697 | 56 | 628 | 8.87e-137 | 416 |
| MS.gene068026.t1 | MTR_4g106950 | 29.268 | 205 | 118 | 7 | 142 | 335 | 11 | 199 | 2.41e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068026.t1 | AT4G33630 | 51.821 | 714 | 293 | 11 | 5 | 698 | 1 | 683 | 0.0 | 641 |
| MS.gene068026.t1 | AT4G33630 | 51.821 | 714 | 293 | 11 | 5 | 698 | 1 | 683 | 0.0 | 641 |
| MS.gene068026.t1 | AT4G33630 | 51.821 | 714 | 293 | 11 | 5 | 698 | 1 | 683 | 0.0 | 641 |
| MS.gene068026.t1 | AT1G27510 | 37.896 | 599 | 321 | 10 | 109 | 697 | 92 | 649 | 1.67e-115 | 362 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTATCATCACCACTTTC+TGG | 0.125978 | 4.3:-20869695 | None:intergenic |
| AACAAGAAAATCACCATTTA+AGG | 0.157206 | 4.3:-20870583 | None:intergenic |
| GGCATAATTCCTGAAGAATT+TGG | 0.184513 | 4.3:+20872509 | MS.gene068026:CDS |
| ACTTCATTTGATCCCTTAAA+TGG | 0.216277 | 4.3:+20870570 | MS.gene068026:CDS |
| CAGAATCATCAACCATTATC+TGG | 0.244294 | 4.3:+20870516 | MS.gene068026:CDS |
| GGAAAATGATACAGAAATTC+TGG | 0.265547 | 4.3:+20869958 | MS.gene068026:CDS |
| TTGCAGGTGGGTTGGTGGGC+TGG | 0.268886 | 4.3:+20866006 | MS.gene068026:intron |
| TTTCAACCAGGCTTATATAT+TGG | 0.280789 | 4.3:+20870714 | MS.gene068026:intron |
| AGTGAGGATGAAGATGAAAA+TGG | 0.294516 | 4.3:+20869878 | MS.gene068026:CDS |
| CTGTTGTTGGATTTGTGTAT+TGG | 0.301064 | 4.3:+20872936 | MS.gene068026:CDS |
| AATACTTAGCCAACCTTTGC+AGG | 0.302638 | 4.3:-20870340 | None:intergenic |
| TTTCAGATTGCTCGCTATAA+AGG | 0.326758 | 4.3:+20872711 | MS.gene068026:intron |
| AGATCCTTGTCTACTTTCTC+TGG | 0.328873 | 4.3:-20869815 | None:intergenic |
| TGTTGTTGGATTTGTGTATT+GGG | 0.328933 | 4.3:+20872937 | MS.gene068026:CDS |
| AAAATCGTTGACCCAGATAA+TGG | 0.344302 | 4.3:-20870528 | None:intergenic |
| TCTGATCTTGCAAAATTCAT+TGG | 0.354439 | 4.3:+20870304 | MS.gene068026:CDS |
| GTAGAAGCCTTGAAAATAAC+CGG | 0.354442 | 4.3:+20870846 | MS.gene068026:CDS |
| GATAAATCAATTAAGTTTCA+AGG | 0.355553 | 4.3:+20870256 | MS.gene068026:CDS |
| ATCTCTAGGGGATAAATTGC+TGG | 0.365355 | 4.3:-20870122 | None:intergenic |
| GATGAAGATTTCCCTTTGTC+AGG | 0.367167 | 4.3:-20870232 | None:intergenic |
| CATACCACTCCAAATTCTTC+AGG | 0.377189 | 4.3:-20872518 | None:intergenic |
| ATGGTTTAGAGGACGTTGTT+GGG | 0.389821 | 4.3:-20869595 | None:intergenic |
| AGACAAGGATCTAATGTCTA+AGG | 0.398730 | 4.3:+20869826 | MS.gene068026:CDS |
| GAAGGAAGATTGGCAGAGCC+AGG | 0.415294 | 4.3:+20872735 | MS.gene068026:CDS |
| TGATACAGAAATTCTGGATC+TGG | 0.416518 | 4.3:+20869964 | MS.gene068026:CDS |
| ATTCTTATATGAACTTGCTT+AGG | 0.420300 | 4.3:+20864428 | MS.gene068026:CDS |
| ACCTGGCCAGCTGGTACATA+AGG | 0.421124 | 4.3:-20870873 | None:intergenic |
| ACTAGCATCCAATGGTTTAG+AGG | 0.421647 | 4.3:-20869606 | None:intergenic |
| GACCCTGCTGAGGGAATACC+TGG | 0.424681 | 4.3:+20869728 | MS.gene068026:CDS |
| GGCGAACTGGTGATTCTTGA+TGG | 0.429087 | 4.3:+20872783 | MS.gene068026:CDS |
| GGCTCTTGCAGGTGGGTTGG+TGG | 0.429195 | 4.3:+20866001 | MS.gene068026:intron |
| GAAGGGAAGGGCGTTTGAGA+GGG | 0.435801 | 4.3:-20864261 | None:intergenic |
| ATGGTTGATGATTCTGAGCC+TGG | 0.437377 | 4.3:-20870509 | None:intergenic |
| GCTTCGAGTTCCTGCTAAGC+TGG | 0.437447 | 4.3:+20870147 | MS.gene068026:CDS |
| GTCTTGAAAGATATGATTCC+TGG | 0.440863 | 4.3:+20869761 | MS.gene068026:CDS |
| CAGAATCCTCGATGGGTTGA+CGG | 0.441475 | 4.3:+20872762 | MS.gene068026:CDS |
| ACTGATCAAGAGGGAGATGA+TGG | 0.443283 | 4.3:+20870004 | MS.gene068026:CDS |
| ATTCAAATGAGACGTAGATA+TGG | 0.444516 | 4.3:+20870765 | MS.gene068026:CDS |
| TCCTTATGTACCAGCTGGCC+AGG | 0.445356 | 4.3:+20870872 | MS.gene068026:CDS |
| GCCACGTATCTTCCATGCTC+TGG | 0.445672 | 4.3:-20866078 | None:intergenic |
| ATAAAAGCAGGGCCTGTTGT+TGG | 0.449972 | 4.3:+20872923 | MS.gene068026:CDS |
| TGAAGAAGCTGCCAAGCTTA+AGG | 0.453306 | 4.3:+20865170 | MS.gene068026:CDS |
| GTTGAGAAGGGAAGTGAAGA+AGG | 0.453474 | 4.3:-20864279 | None:intergenic |
| GTGATGTTCACGATGATGAT+TGG | 0.453507 | 4.3:+20864479 | MS.gene068026:CDS |
| TTAAGAGATAAAGCGGGTGC+TGG | 0.455448 | 4.3:+20865458 | MS.gene068026:CDS |
| CAGCTAACAATGACAGTGTT+GGG | 0.460581 | 4.3:+20865208 | MS.gene068026:CDS |
| GGGTACCAACTTCCACATAA+AGG | 0.460668 | 4.3:+20872488 | MS.gene068026:CDS |
| GCTCTTGCAGGTGGGTTGGT+GGG | 0.465325 | 4.3:+20866002 | MS.gene068026:intron |
| TCCTGCTAAGCTGGAGATCA+AGG | 0.467768 | 4.3:+20870156 | MS.gene068026:CDS |
| TCCTTGATCTCCAGCTTAGC+AGG | 0.470115 | 4.3:-20870157 | None:intergenic |
| GTGGCATTTCGTGCAAAAGT+TGG | 0.472710 | 4.3:+20872461 | MS.gene068026:CDS |
| ATTGTGATAAATAGTGATCT+TGG | 0.474745 | 4.3:+20870028 | MS.gene068026:CDS |
| TTCAAGACATTCTGAAATCC+AGG | 0.474941 | 4.3:-20869746 | None:intergenic |
| CATCGAGGATTCTGAAACCC+TGG | 0.475587 | 4.3:-20872753 | None:intergenic |
| GGTGATTGAAGAATTATTTG+AGG | 0.478893 | 4.3:+20869847 | MS.gene068026:CDS |
| CATGATATTACCTGGCCAGC+TGG | 0.478968 | 4.3:-20870882 | None:intergenic |
| ATGCTCAGCGAATTCGTAAC+CGG | 0.481082 | 4.3:+20864388 | MS.gene068026:CDS |
| TTCACGATGATGATTGGGAT+TGG | 0.481484 | 4.3:+20864485 | MS.gene068026:CDS |
| AGCTGGATGGTCCTGACAAA+GGG | 0.483919 | 4.3:+20870221 | MS.gene068026:CDS |
| ATCCAGAAAGTGGTGATGAT+AGG | 0.485466 | 4.3:+20869693 | MS.gene068026:CDS |
| TGGTCTTCTTCAATCGGCTT+AGG | 0.485777 | 4.3:+20872978 | MS.gene068026:CDS |
| TCAGGAATTATGCCTTTATG+TGG | 0.485937 | 4.3:-20872500 | None:intergenic |
| GGATAATGAGAAGACGTTCC+TGG | 0.486464 | 4.3:-20864543 | None:intergenic |
| TCGATGGGTTGACGGCGAAC+TGG | 0.487669 | 4.3:+20872770 | MS.gene068026:CDS |
| TTTAAGGGATCAAATGAAGT+TGG | 0.487879 | 4.3:-20870567 | None:intergenic |
| CTGTGTACCTAAAGCGAAAA+GGG | 0.489273 | 4.3:+20869558 | MS.gene068026:CDS |
| CTATAAAGGTGAAGGAAGAT+TGG | 0.490683 | 4.3:+20872725 | MS.gene068026:CDS |
| ATTTGAGGAAGAAGAGAGTG+AGG | 0.490887 | 4.3:+20869862 | MS.gene068026:CDS |
| AATCCAGGTATTCCCTCAGC+AGG | 0.492533 | 4.3:-20869731 | None:intergenic |
| GAAGGGAAGTGAAGAAGGGA+AGG | 0.493115 | 4.3:-20864274 | None:intergenic |
| TTATGCCTTTATGTGGAAGT+TGG | 0.496915 | 4.3:-20872493 | None:intergenic |
| ACAAGAAAATCACCATTTAA+GGG | 0.498233 | 4.3:-20870582 | None:intergenic |
| GCTGTGTACCTAAAGCGAAA+AGG | 0.499106 | 4.3:+20869557 | MS.gene068026:CDS |
| AATGGTTTAGAGGACGTTGT+TGG | 0.499517 | 4.3:-20869596 | None:intergenic |
| TCTAAACCATTGGATGCTAG+TGG | 0.500108 | 4.3:+20869608 | MS.gene068026:CDS |
| GTTGTGGTTGTCGTCGGAGA+CGG | 0.502569 | 4.3:-20864323 | None:intergenic |
| GGATCTGGAAGACATTAAGT+TGG | 0.507763 | 4.3:+20869979 | MS.gene068026:CDS |
| CTGGCGTCAGCATTTCGATC+AGG | 0.508636 | 4.3:+20864513 | MS.gene068026:CDS |
| CAATACACAAATCCAACAAC+AGG | 0.509155 | 4.3:-20872935 | None:intergenic |
| GGCTTATATATTGGTGCATA+CGG | 0.510863 | 4.3:+20870723 | MS.gene068026:intron |
| GGAACTCGAAGCAAATCTCT+AGG | 0.511114 | 4.3:-20870136 | None:intergenic |
| ATCGAATTGTTTAATTGCGC+CGG | 0.512264 | 4.3:-20864407 | None:intergenic |
| TGAGAGGGAAGGTAGTAGAG+AGG | 0.512350 | 4.3:-20864246 | None:intergenic |
| TTGAGAAGGGAAGTGAAGAA+GGG | 0.515623 | 4.3:-20864278 | None:intergenic |
| TGTACTGTTGTGGTTGTCGT+CGG | 0.518748 | 4.3:-20864329 | None:intergenic |
| TTTCGTGCAAAAGTTGGAAA+GGG | 0.520545 | 4.3:+20872467 | MS.gene068026:CDS |
| TCGGCTTAGGCTTCAACAGT+AGG | 0.520867 | 4.3:+20872991 | MS.gene068026:CDS |
| TGCGATCGCCACCTTAAGCT+TGG | 0.521130 | 4.3:-20865181 | None:intergenic |
| CGCCATCGTTTGTACTGTTG+TGG | 0.522210 | 4.3:-20864339 | None:intergenic |
| ATCGGCTCTTGCAGGTGGGT+TGG | 0.524231 | 4.3:+20865998 | MS.gene068026:intron |
| AGAAGGGAAGGGCGTTTGAG+AGG | 0.524467 | 4.3:-20864262 | None:intergenic |
| TGATGTTCACGATGATGATT+GGG | 0.524545 | 4.3:+20864480 | MS.gene068026:CDS |
| ACTGGTGATTCTTGATGGAA+AGG | 0.526262 | 4.3:+20872788 | MS.gene068026:CDS |
| AACAACGTCCTCTAAACCAT+TGG | 0.527043 | 4.3:+20869598 | MS.gene068026:CDS |
| ATTGCTGTCAAAGTTGTCAT+TGG | 0.527238 | 4.3:+20870079 | MS.gene068026:CDS |
| CAGAGGCATAACGGTTGAGA+AGG | 0.529094 | 4.3:-20864292 | None:intergenic |
| TGGCAAGGAGTTATAGTCCT+AGG | 0.530789 | 4.3:+20866097 | MS.gene068026:CDS |
| AAAAGGTGACTTTAAGTCGC+AGG | 0.534499 | 4.3:+20867505 | MS.gene068026:CDS |
| AGAGGACGGTAGGGCGAAGG+AGG | 0.535554 | 4.3:+20870797 | MS.gene068026:CDS |
| CAACTTGCAACATCTGCTGC+TGG | 0.537244 | 4.3:+20867446 | MS.gene068026:CDS |
| AAAATCTTCACCTTCACACC+AGG | 0.537647 | 4.3:-20869779 | None:intergenic |
| GCAAGAGGACGGTAGGGCGA+AGG | 0.538768 | 4.3:+20870794 | MS.gene068026:CDS |
| GCAGCTAACAATGACAGTGT+TGG | 0.540513 | 4.3:+20865207 | MS.gene068026:CDS |
| GATAAGTCTCACTCTAAGCC+AGG | 0.543885 | 4.3:+20870491 | MS.gene068026:CDS |
| TGGTTTAGAGGACGTTGTTG+GGG | 0.544662 | 4.3:-20869594 | None:intergenic |
| ATTACGTCATGCTGTATATG+TGG | 0.546678 | 4.3:+20865140 | MS.gene068026:CDS |
| TGAAAACGAAGTCAATCAGC+TGG | 0.546784 | 4.3:+20870204 | MS.gene068026:CDS |
| GAACTCGAAGCAAATCTCTA+GGG | 0.553123 | 4.3:-20870135 | None:intergenic |
| TTTCGATCAGGTTGATGACC+AGG | 0.559219 | 4.3:+20864525 | MS.gene068026:CDS |
| GCTGTCAAAGTTGTCATTGG+TGG | 0.560173 | 4.3:+20870082 | MS.gene068026:CDS |
| GGAAGGGCGTTTGAGAGGGA+AGG | 0.560597 | 4.3:-20864257 | None:intergenic |
| ATTTCGTGCAAAAGTTGGAA+AGG | 0.563212 | 4.3:+20872466 | MS.gene068026:CDS |
| AGAATCATCAACCATTATCT+GGG | 0.563332 | 4.3:+20870517 | MS.gene068026:CDS |
| GTCAATGGCAAGAGGACGGT+AGG | 0.565511 | 4.3:+20870787 | MS.gene068026:CDS |
| ATGATTGGGATTGGAATCGC+TGG | 0.567951 | 4.3:+20864494 | MS.gene068026:CDS |
| TCTTGCAAAATTCATTGGCA+AGG | 0.568463 | 4.3:+20870309 | MS.gene068026:CDS |
| TAAGTTGGAAACTGATCAAG+AGG | 0.571150 | 4.3:+20869994 | MS.gene068026:CDS |
| CTGATCAAGAGGGAGATGAT+GGG | 0.571236 | 4.3:+20870005 | MS.gene068026:CDS |
| ACGTCTTCTCATTATCCTCA+AGG | 0.573451 | 4.3:+20864549 | MS.gene068026:CDS |
| CGCTGAGCATCGAATCCCAC+CGG | 0.573541 | 4.3:-20864375 | None:intergenic |
| TGAGACGTAGATATGGTCAA+TGG | 0.575070 | 4.3:+20870772 | MS.gene068026:CDS |
| CAGCTGGATGGTCCTGACAA+AGG | 0.575602 | 4.3:+20870220 | MS.gene068026:CDS |
| AGAGGCATAACGGTTGAGAA+GGG | 0.581356 | 4.3:-20864291 | None:intergenic |
| TATATGAACTTGCTTAGGAG+AGG | 0.581864 | 4.3:+20864433 | MS.gene068026:CDS |
| GCGACGGTAACAACCGCCGG+TGG | 0.583150 | 4.3:+20864359 | MS.gene068026:CDS |
| AAGGGAAGTGAAGAAGGGAA+GGG | 0.583385 | 4.3:-20864273 | None:intergenic |
| GGGGATCCTTATGTACCAGC+TGG | 0.584664 | 4.3:+20870867 | MS.gene068026:CDS |
| AGTGGTGATGATAGGAATGA+TGG | 0.585157 | 4.3:+20869701 | MS.gene068026:CDS |
| AGCTGGTACATAAGGATCCC+CGG | 0.585540 | 4.3:-20870865 | None:intergenic |
| ATGGCGACGGTAACAACCGC+CGG | 0.587272 | 4.3:+20864356 | MS.gene068026:CDS |
| AACGAAGTCAATCAGCTGGA+TGG | 0.589327 | 4.3:+20870208 | MS.gene068026:CDS |
| TAGTGGGAGATCGAGTTCAA+TGG | 0.592088 | 4.3:+20869625 | MS.gene068026:CDS |
| TGATGGCTCTGACCCTGCTG+AGG | 0.594277 | 4.3:+20869718 | MS.gene068026:CDS |
| TAGAAGCCTTGAAAATAACC+GGG | 0.595455 | 4.3:+20870847 | MS.gene068026:CDS |
| AGGGTTTCAGAATCCTCGAT+GGG | 0.596282 | 4.3:+20872755 | MS.gene068026:CDS |
| CAAGGATAAAGTACCTGCAA+AGG | 0.597432 | 4.3:+20870327 | MS.gene068026:CDS |
| AAGGAAGATTGGCAGAGCCA+GGG | 0.598137 | 4.3:+20872736 | MS.gene068026:CDS |
| TTATAGGTGCTGAAAGAGGT+AGG | 0.599822 | 4.3:+20870462 | MS.gene068026:intron |
| CTAAACCATTGGATGCTAGT+GGG | 0.606784 | 4.3:+20869609 | MS.gene068026:CDS |
| ATTGCTCGCTATAAAGGTGA+AGG | 0.614217 | 4.3:+20872717 | MS.gene068026:CDS |
| GAGTTGAGACAGAGGCATAA+CGG | 0.617307 | 4.3:-20864301 | None:intergenic |
| ATTCGCATAACTCCAGAGCA+TGG | 0.619023 | 4.3:+20866066 | MS.gene068026:CDS |
| CAGGGTTTCAGAATCCTCGA+TGG | 0.621991 | 4.3:+20872754 | MS.gene068026:CDS |
| TGACAGTGAAGATGAAGACA+AGG | 0.622731 | 4.3:+20869937 | MS.gene068026:CDS |
| AATCTTATAGGTGCTGAAAG+AGG | 0.625560 | 4.3:+20870458 | MS.gene068026:intron |
| CGACGGTAACAACCGCCGGT+GGG | 0.626255 | 4.3:+20864360 | MS.gene068026:CDS |
| TTCGTGCAAAAGTTGGAAAG+GGG | 0.629131 | 4.3:+20872468 | MS.gene068026:CDS |
| CGTGCTGCTGATAAAGAAGA+CGG | 0.635990 | 4.3:+20864457 | MS.gene068026:CDS |
| AACTCCAGAGAAAGTAGACA+AGG | 0.636781 | 4.3:+20869811 | MS.gene068026:CDS |
| GATGAAAATGGAGAAGATGA+CGG | 0.637566 | 4.3:+20869890 | MS.gene068026:CDS |
| GATCTCCCACTAGCATCCAA+TGG | 0.639472 | 4.3:-20869614 | None:intergenic |
| GATGACGGCGACGAAGACGA+CGG | 0.640000 | 4.3:+20869905 | MS.gene068026:CDS |
| TCAATGGCAAGAGGACGGTA+GGG | 0.641899 | 4.3:+20870788 | MS.gene068026:CDS |
| TATGGTCAATGGCAAGAGGA+CGG | 0.642128 | 4.3:+20870783 | MS.gene068026:CDS |
| AGTACTGAAGATCCAGAAAG+TGG | 0.643156 | 4.3:+20869683 | MS.gene068026:CDS |
| AACTCGAAGCAAATCTCTAG+GGG | 0.644855 | 4.3:-20870134 | None:intergenic |
| TAGATATGGTCAATGGCAAG+AGG | 0.645192 | 4.3:+20870779 | MS.gene068026:CDS |
| GATGGCTCTGACCCTGCTGA+GGG | 0.645476 | 4.3:+20869719 | MS.gene068026:CDS |
| AGATATGATTCCTGGTGTGA+AGG | 0.648291 | 4.3:+20869769 | MS.gene068026:CDS |
| ACGTCATGCTGTATATGTGG+AGG | 0.648411 | 4.3:+20865143 | MS.gene068026:CDS |
| AGCATGGAAGATACGTGGCA+AGG | 0.655041 | 4.3:+20866082 | MS.gene068026:CDS |
| AATTCCTGAAGAATTTGGAG+TGG | 0.655235 | 4.3:+20872514 | MS.gene068026:CDS |
| ATGCGAATAATTAGACCATG+TGG | 0.655540 | 4.3:-20866051 | None:intergenic |
| AGAAGCTGCCAAGCTTAAGG+TGG | 0.664484 | 4.3:+20865173 | MS.gene068026:CDS |
| GGTTTAGAGGACGTTGTTGG+GGG | 0.666760 | 4.3:-20869593 | None:intergenic |
| ATCCAGGTATTCCCTCAGCA+GGG | 0.668053 | 4.3:-20869730 | None:intergenic |
| AACAGTACAAACGATGGCGA+CGG | 0.670972 | 4.3:+20864343 | MS.gene068026:CDS |
| AAGCGAAAAGGGTCCTACCA+CGG | 0.671399 | 4.3:+20869569 | MS.gene068026:CDS |
| CGTCTTCTTTATCAGCAGCA+CGG | 0.673191 | 4.3:-20864456 | None:intergenic |
| CGGAGACGGAGTTGAGACAG+AGG | 0.677149 | 4.3:-20864309 | None:intergenic |
| TGAGCATCGAATCCCACCGG+CGG | 0.680677 | 4.3:-20864372 | None:intergenic |
| AAAGATGTGAACGATCCACA+TGG | 0.683209 | 4.3:+20866036 | MS.gene068026:CDS |
| TCCAGAGCATGGAAGATACG+TGG | 0.699631 | 4.3:+20866077 | MS.gene068026:CDS |
| AACCACAACAGTACAAACGA+TGG | 0.710045 | 4.3:+20864337 | MS.gene068026:CDS |
| AGAGAGCCATAAAAGAAGAG+CGG | 0.715120 | 4.3:+20865417 | MS.gene068026:intron |
| AGTTCGCCGTCAACCCATCG+AGG | 0.722680 | 4.3:-20872768 | None:intergenic |
| AAGTTGGAAACTGATCAAGA+GGG | 0.742549 | 4.3:+20869995 | MS.gene068026:CDS |
| AGAAGCCTTGAAAATAACCG+GGG | 0.742842 | 4.3:+20870848 | MS.gene068026:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20864190 | 20873012 | 20864190 | ID=MS.gene068026 |
| chr4.3 | mRNA | 20864190 | 20873012 | 20864190 | ID=MS.gene068026.t1;Parent=MS.gene068026 |
| chr4.3 | exon | 20864190 | 20864570 | 20864190 | ID=MS.gene068026.t1.exon1;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20864190 | 20864570 | 20864190 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20865135 | 20865251 | 20865135 | ID=MS.gene068026.t1.exon2;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20865135 | 20865251 | 20865135 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20865419 | 20865484 | 20865419 | ID=MS.gene068026.t1.exon3;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20865419 | 20865484 | 20865419 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20866012 | 20866118 | 20866012 | ID=MS.gene068026.t1.exon4;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20866012 | 20866118 | 20866012 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20867445 | 20867526 | 20867445 | ID=MS.gene068026.t1.exon5;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20867445 | 20867526 | 20867445 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20869557 | 20870348 | 20869557 | ID=MS.gene068026.t1.exon6;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20869557 | 20870348 | 20869557 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20870468 | 20870591 | 20870468 | ID=MS.gene068026.t1.exon7;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20870468 | 20870591 | 20870468 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20870724 | 20870893 | 20870724 | ID=MS.gene068026.t1.exon8;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20870724 | 20870893 | 20870724 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20872461 | 20872535 | 20872461 | ID=MS.gene068026.t1.exon9;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20872461 | 20872535 | 20872461 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20872717 | 20872809 | 20872717 | ID=MS.gene068026.t1.exon10;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20872717 | 20872809 | 20872717 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| chr4.3 | exon | 20872920 | 20873012 | 20872920 | ID=MS.gene068026.t1.exon11;Parent=MS.gene068026.t1 |
| chr4.3 | CDS | 20872920 | 20873012 | 20872920 | ID=cds.MS.gene068026.t1;Parent=MS.gene068026.t1 |
| Gene Sequence |
| Protein sequence |
