AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068139


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068139.t1 MTR_1g050550 89.244 595 17 3 1 548 1 595 0.0 1057
MS.gene068139.t1 MTR_1g059080 81.942 587 68 3 1 549 1 587 0.0 939
MS.gene068139.t1 MTR_1g111510 57.094 585 206 4 8 549 10 592 0.0 671
MS.gene068139.t1 MTR_1g111540 56.971 581 202 5 8 548 10 582 0.0 663
MS.gene068139.t1 MTR_1g111530 57.672 567 198 3 8 534 6 570 0.0 662
MS.gene068139.t1 MTR_1g111550 56.849 584 202 6 11 549 12 590 0.0 650
MS.gene068139.t1 MTR_7g102880 54.392 592 223 5 4 548 9 600 0.0 620
MS.gene068139.t1 MTR_5g090570 34.128 545 295 7 24 526 11 533 1.34e-95 301
MS.gene068139.t1 MTR_2g100400 32.092 564 302 8 21 529 4 541 3.57e-94 298
MS.gene068139.t1 MTR_7g029015 33.564 578 296 13 24 523 15 582 5.36e-87 280
MS.gene068139.t1 MTR_3g099150 32.305 551 305 12 24 517 15 554 3.12e-82 267
MS.gene068139.t1 MTR_4g073690 32.523 535 305 8 24 517 15 534 2.92e-75 248
MS.gene068139.t1 MTR_5g022380 29.710 552 308 11 24 530 13 529 2.26e-73 243
MS.gene068139.t1 MTR_2g450710 29.562 548 324 8 25 517 13 553 6.06e-70 235
MS.gene068139.t1 MTR_4g116210 28.885 547 308 13 39 517 26 559 1.69e-65 223
MS.gene068139.t1 MTR_4g073690 33.511 376 236 6 24 391 15 384 3.45e-51 180
MS.gene068139.t1 MTR_5g022380 28.634 454 244 11 122 530 1 419 4.78e-51 181
MS.gene068139.t1 MTR_3g466040 25.989 531 338 11 21 517 4 513 7.94e-32 129
MS.gene068139.t1 MTR_7g083660 26.609 575 335 17 24 531 7 561 2.36e-30 125
MS.gene068139.t1 MTR_3g466110 24.498 498 311 10 22 474 5 482 1.99e-26 113
MS.gene068139.t1 MTR_5g026350 26.027 584 333 22 24 529 7 569 2.12e-24 107
MS.gene068139.t1 MTR_2g104250 30.348 201 120 5 322 517 104 289 7.94e-24 102
MS.gene068139.t1 MTR_5g095240 60.563 71 28 0 453 523 2 72 2.13e-23 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068139.t1 AT2G39210 58.602 558 185 4 14 527 11 566 0.0 666
MS.gene068139.t1 AT2G28120 54.371 572 219 4 9 541 2 570 0.0 617
MS.gene068139.t1 AT1G74780 34.705 559 290 6 18 527 1 533 4.84e-103 320
MS.gene068139.t1 AT1G18940 33.877 552 284 7 19 523 4 521 4.86e-92 292
MS.gene068139.t1 AT2G34350 33.272 547 287 9 24 523 7 522 1.25e-91 291
MS.gene068139.t1 AT2G34350 33.272 547 287 9 24 523 7 522 1.25e-91 291
MS.gene068139.t1 AT5G14120 32.984 573 309 11 21 525 13 578 6.72e-89 285
MS.gene068139.t1 AT2G34355 32.971 552 292 9 18 523 1 520 1.19e-88 283
MS.gene068139.t1 AT3G01930 31.293 588 320 10 11 525 7 583 6.29e-86 278
MS.gene068139.t1 AT5G50520 31.648 534 305 8 24 516 16 530 7.20e-86 276
MS.gene068139.t1 AT5G50630 31.648 534 305 8 24 516 16 530 7.20e-86 276
MS.gene068139.t1 AT2G16660 32.523 535 302 8 24 517 14 530 2.50e-79 259
MS.gene068139.t1 AT4G34950 31.196 577 300 13 24 530 16 565 6.31e-77 253
MS.gene068139.t1 AT1G80530 29.236 537 306 11 38 518 27 545 1.46e-62 215
MS.gene068139.t1 AT3G01930 31.429 420 240 7 11 390 7 418 5.02e-58 200
MS.gene068139.t1 AT3G01930 29.769 477 255 9 122 525 1 470 1.42e-56 197
MS.gene068139.t1 AT2G34355 31.172 401 206 8 161 523 2 370 7.08e-53 184
MS.gene068139.t1 AT2G16660 33.333 375 235 6 24 391 14 380 1.23e-51 181
MS.gene068139.t1 AT3G01630 24.680 547 334 14 24 517 23 544 4.73e-29 121
MS.gene068139.t1 AT3G01630 24.725 546 333 13 24 516 41 561 6.18e-29 121
MS.gene068139.t1 AT1G31470 25.906 552 335 15 18 517 34 563 3.60e-25 110
MS.gene068139.t1 AT4G19450 24.786 585 334 16 24 529 7 564 4.21e-25 109
MS.gene068139.t1 AT2G30300 23.704 540 313 13 25 516 8 496 1.06e-21 99.0
MS.gene068139.t1 AT4G19450 24.519 416 253 11 24 393 7 407 1.45e-20 94.7
MS.gene068139.t1 AT5G45275 30.570 193 132 2 24 215 7 198 6.23e-18 87.4

Find 128 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCTTGTTGTTGTTATTA+TGG 0.134860 1.4:-36927657 MS.gene068139:CDS
ATCACTGCTGTTAGCCTCTT+AGG 0.193163 1.4:-36926867 MS.gene068139:CDS
AAGAGAAATCAAATCAGTTT+TGG 0.212226 1.4:-36928302 MS.gene068139:CDS
TACATGTCTTTAATCCTTGC+AGG 0.243168 1.4:-36927776 MS.gene068139:CDS
ATATTCCATACTGGAGGTTT+AGG 0.248049 1.4:+36928103 None:intergenic
AGTCAAATTGGACTATCTTT+AGG 0.254810 1.4:-36927365 MS.gene068139:CDS
CTTGAGCTTCTTCAAGGACT+TGG 0.257995 1.4:-36928254 MS.gene068139:CDS
GTAAATAACTTGAGTCAAAT+TGG 0.269728 1.4:-36927377 MS.gene068139:CDS
CCTAACAGGAAGATGGTTTA+TGG 0.270560 1.4:-36928386 MS.gene068139:CDS
ATTATTATTGGTTTCTGCTT+TGG 0.272391 1.4:-36927134 MS.gene068139:CDS
TTGTGTCCCTAATGGCAATT+TGG 0.273307 1.4:-36927316 MS.gene068139:CDS
CAACTATACTATGCCTTCTA+TGG 0.279543 1.4:-36927932 MS.gene068139:CDS
TATGTAGCATCAATTATTAT+TGG 0.308067 1.4:-36927146 MS.gene068139:CDS
TTGGTTGTTCAGCTCTCTTA+TGG 0.310124 1.4:+36927828 None:intergenic
CACTCTCTTGAGCTTCTTCA+AGG 0.315653 1.4:-36928260 MS.gene068139:CDS
TCAATCATATCTGAACTCTT+TGG 0.320938 1.4:-36927089 MS.gene068139:CDS
TTTGGAGTCATTTCCATAGA+AGG 0.324553 1.4:+36927919 None:intergenic
CTAAGGCAAATGGCAGCATT+AGG 0.325989 1.4:-36926960 MS.gene068139:CDS
CATAAGTAAAATTAAAGATT+TGG 0.327529 1.4:+36927901 None:intergenic
CTAATGCTGCCATTTGCCTT+AGG 0.327977 1.4:+36926961 None:intergenic
CATCATGTCAAGGCTGAAAA+TGG 0.337307 1.4:+36927448 None:intergenic
TATTCCATACTGGAGGTTTA+GGG 0.337312 1.4:+36928104 None:intergenic
TGTCTCTAACTTTGGTGTTA+AGG 0.341183 1.4:-36926836 MS.gene068139:CDS
CCTTGGGTTGTCTTAACAAT+TGG 0.343987 1.4:-36928184 MS.gene068139:CDS
GTTTCTGCTTTGGTGCAAAT+TGG 0.344739 1.4:-36927124 MS.gene068139:CDS
TTTATGATCATGTCAGTATC+TGG 0.347170 1.4:-36928352 MS.gene068139:CDS
TTGTTAAGTGTGAGGGTTGC+TGG 0.349828 1.4:-36927005 MS.gene068139:CDS
GGACATTAAATGCAATTAGA+AGG 0.350651 1.4:+36927180 None:intergenic
GATAGATCCAAATTGCCATT+AGG 0.350724 1.4:+36927309 None:intergenic
CTCTTATGGTGCTTAATAAC+TGG 0.351299 1.4:+36927842 None:intergenic
GTATGGTCTTCGCCTCTACT+TGG 0.352552 1.4:+36927482 None:intergenic
TGGAAGTCAATGCTACAAAT+TGG 0.355269 1.4:-36926901 MS.gene068139:CDS
TTATGGAAGAACAAAGGATT+TGG 0.359352 1.4:-36927640 MS.gene068139:CDS
GATGCTACATAAAGACCATT+TGG 0.367090 1.4:+36927158 None:intergenic
TAGAAATAATGAAACTGAAT+TGG 0.371893 1.4:-36926763 MS.gene068139:CDS
TAATGCTGCCATTTGCCTTA+GGG 0.382095 1.4:+36926962 None:intergenic
GGGTCAATAGCAAGTCCAAT+AGG 0.385410 1.4:-36927035 MS.gene068139:CDS
GAGCAAGAGAAGCATCAAAA+TGG 0.387481 1.4:+36927685 None:intergenic
ATAGATCCAAATTGCCATTA+GGG 0.390342 1.4:+36927310 None:intergenic
GGCACTTGTGTCTCTAACTT+TGG 0.390758 1.4:-36926844 MS.gene068139:CDS
TGGGTTGTCTTAACAATTGG+TGG 0.401882 1.4:-36928181 MS.gene068139:CDS
CAATGAAATCACACCTCCTT+GGG 0.404458 1.4:-36928200 MS.gene068139:CDS
ATCTTCCTGTTAGGACTTGA+AGG 0.405331 1.4:+36928395 None:intergenic
TTCACCCTTCAAGTCCTAAC+AGG 0.407883 1.4:-36928400 MS.gene068139:CDS
CCATAAACCATCTTCCTGTT+AGG 0.408283 1.4:+36928386 None:intergenic
TCACTGCTGTTAGCCTCTTA+GGG 0.413238 1.4:-36926866 MS.gene068139:CDS
CTTAACAAGTATGACCCTAT+TGG 0.415970 1.4:+36927020 None:intergenic
GAGGAGTCTCTCCTGTAGAT+TGG 0.418500 1.4:+36927561 None:intergenic
AAATCCCTAAACCTCCAGTA+TGG 0.420351 1.4:-36928108 MS.gene068139:CDS
GATTGGTGAGTCTGTGGCTT+AGG 0.421686 1.4:+36927578 None:intergenic
ATCAAAAGCAAGTTTCCTCT+TGG 0.423901 1.4:-36927523 MS.gene068139:CDS
TATGGTCTTCGCCTCTACTT+GGG 0.428857 1.4:+36927483 None:intergenic
ATGGCAATTTGGATCTATCT+AGG 0.429608 1.4:-36927305 MS.gene068139:intron
ATGTGCTTATACATATTCAT+TGG 0.430843 1.4:-36928082 MS.gene068139:CDS
TACTCAACATTGTACAATGT+TGG 0.432900 1.4:-36927056 MS.gene068139:CDS
TTGAGCTTCTTCAAGGACTT+GGG 0.443522 1.4:-36928253 MS.gene068139:CDS
TTCAGGAAAGAAACATGGTT+GGG 0.444001 1.4:-36928437 MS.gene068139:CDS
ACTCAACATTGTACAATGTT+GGG 0.445413 1.4:-36927055 MS.gene068139:CDS
TCTGGAGCAAGCTACATGTT+TGG 0.448168 1.4:-36928334 MS.gene068139:CDS
TTGCAATTCAACTCCTCCCC+TGG 0.457387 1.4:+36926924 None:intergenic
GGTAGTAGAGGTGTTGTCAT+AGG 0.459692 1.4:-36927998 MS.gene068139:CDS
ATGCTACATAAAGACCATTT+GGG 0.460886 1.4:+36927159 None:intergenic
TCAATGAAATCACACCTCCT+TGG 0.465198 1.4:-36928201 MS.gene068139:CDS
TATAAGCACATATTCCATAC+TGG 0.466541 1.4:+36928094 None:intergenic
TTAGGGTTAAAGAGGAAGCC+AGG 0.467861 1.4:-36926942 MS.gene068139:CDS
ATTGCATTTAATGTCCCAAA+TGG 0.471433 1.4:-36927173 MS.gene068139:CDS
GACTTGAAGGGTGAAGCCTT+TGG 0.479566 1.4:+36928408 None:intergenic
AACCACATTTGTGTCCCTAA+TGG 0.479854 1.4:-36927324 MS.gene068139:CDS
TAAGGCAAATGGCAGCATTA+GGG 0.486171 1.4:-36926959 MS.gene068139:CDS
CAAAGAAGCCCTAAGGCAAA+TGG 0.493202 1.4:-36926970 MS.gene068139:CDS
ATCTGTCTATGCATCATTTG+AGG 0.496384 1.4:+36926713 None:intergenic
ACATGTCTTTAATCCTTGCA+GGG 0.496948 1.4:-36927775 MS.gene068139:CDS
GTCATACTTGTTAAGTGTGA+GGG 0.503976 1.4:-36927012 MS.gene068139:CDS
TTCAAGTCCTAACAGGAAGA+TGG 0.508794 1.4:-36928393 MS.gene068139:CDS
TGGCAGCATTAGGGTTAAAG+AGG 0.518733 1.4:-36926950 MS.gene068139:CDS
GAGGTGTGATTTCATTGAGC+AGG 0.519942 1.4:+36928206 None:intergenic
GTCTATGCATCATTTGAGGC+AGG 0.522205 1.4:+36926717 None:intergenic
AAATGGCTTGAAATATTGTA+TGG 0.522674 1.4:+36927465 None:intergenic
AGTGGTTATCTTGGTTTGAG+TGG 0.525713 1.4:-36927968 MS.gene068139:CDS
AAAACAAAAGTTACAGCAGT+TGG 0.525937 1.4:+36927869 None:intergenic
GATATGATTGAAAATAGTAC+TGG 0.527060 1.4:+36927101 None:intergenic
TGGTGAGTCTGTGGCTTAGG+AGG 0.531187 1.4:+36927581 None:intergenic
TTTCAGGAAAGAAACATGGT+TGG 0.532488 1.4:-36928438 MS.gene068139:CDS
AACCAAGATAACCACTCAAA+AGG 0.532585 1.4:+36927975 None:intergenic
TAGGGTTAAAGAGGAAGCCA+GGG 0.536413 1.4:-36926941 MS.gene068139:CDS
TGAGTCTGTGGCTTAGGAGG+AGG 0.538831 1.4:+36927584 None:intergenic
TCCATAATAACAACAACAAG+AGG 0.549935 1.4:+36927656 None:intergenic
GTAGCCACAATATGTGGACT+TGG 0.551117 1.4:-36927416 MS.gene068139:CDS
GGTCAATAGCAAGTCCAATA+GGG 0.554065 1.4:-36927034 MS.gene068139:CDS
GTTGTGACTCAGAACAAGGT+TGG 0.560023 1.4:-36926741 MS.gene068139:CDS
AAGAATTTCCCTGGTAGTAG+AGG 0.560197 1.4:-36928010 MS.gene068139:CDS
TCTAACATAGGCATTCTCTC+AGG 0.560326 1.4:-36928229 MS.gene068139:CDS
GAGACACAAGTGCCCCTAAG+AGG 0.560359 1.4:+36926853 None:intergenic
CCACAGACTCACCAATCTAC+AGG 0.561675 1.4:-36927572 MS.gene068139:CDS
ATGGTCTTCGCCTCTACTTG+GGG 0.561692 1.4:+36927484 None:intergenic
GAAGCTCAAGAGAGTGAGAG+TGG 0.562224 1.4:+36928267 None:intergenic
GGGGAGGAGTTGAATTGCAA+TGG 0.565523 1.4:-36926921 MS.gene068139:CDS
TCCACCAAGTCCACATATTG+TGG 0.566013 1.4:+36927412 None:intergenic
ATGACAACACCTCTACTACC+AGG 0.567626 1.4:+36928001 None:intergenic
TCAAGAGAGTGAGAGTGGAT+TGG 0.568198 1.4:+36928272 None:intergenic
CCTGTAGATTGGTGAGTCTG+TGG 0.569629 1.4:+36927572 None:intergenic
TCTCATTGTTCAACCAACAC+TGG 0.569882 1.4:-36928052 MS.gene068139:CDS
AATGTGGTTATACTATGTGC+AGG 0.572229 1.4:+36927338 None:intergenic
AAGGACTTGGGATCTAACAT+AGG 0.575857 1.4:-36928241 MS.gene068139:CDS
TGCCATTAGGGACACAAATG+TGG 0.577289 1.4:+36927322 None:intergenic
TTGTTATTATGGAAGAACAA+AGG 0.585080 1.4:-36927646 MS.gene068139:CDS
GGTCATACTTGTTAAGTGTG+AGG 0.586817 1.4:-36927013 MS.gene068139:CDS
GCACTATGATCATTATCATG+AGG 0.591440 1.4:+36927750 None:intergenic
ACTAGTGTAAAGAATTTCCC+TGG 0.597323 1.4:-36928019 MS.gene068139:CDS
GCCACAATATGTGGACTTGG+TGG 0.598104 1.4:-36927413 MS.gene068139:CDS
TCTATGACAAAGAAGCCCTA+AGG 0.600638 1.4:-36926977 MS.gene068139:CDS
CACTGCTGTTAGCCTCTTAG+GGG 0.603640 1.4:-36926865 MS.gene068139:CDS
TTATCATGAGGAACCCTGCA+AGG 0.614007 1.4:+36927762 None:intergenic
CCAATTGTTAAGACAACCCA+AGG 0.620677 1.4:+36928184 None:intergenic
GTTAAAGAGGAAGCCAGGGG+AGG 0.622388 1.4:-36926937 MS.gene068139:CDS
TCTTCCTGTTAGGACTTGAA+GGG 0.625189 1.4:+36928396 None:intergenic
TGACAACACCTCTACTACCA+GGG 0.633964 1.4:+36928002 None:intergenic
AGTGACTAAAGCTCCAGTGT+TGG 0.645448 1.4:+36928039 None:intergenic
AAGCACATATTCCATACTGG+AGG 0.647458 1.4:+36928097 None:intergenic
TGGTCTTCGCCTCTACTTGG+GGG 0.657723 1.4:+36927485 None:intergenic
CCATAATAACAACAACAAGA+GGG 0.664165 1.4:+36927657 None:intergenic
AGGGTTAAAGAGGAAGCCAG+GGG 0.664886 1.4:-36926940 MS.gene068139:CDS
ACTTGGTGGAACTCTTACTG+TGG 0.667152 1.4:-36927399 MS.gene068139:CDS
CATGGTTGGGAAAACACCAA+AGG 0.678908 1.4:-36928424 MS.gene068139:CDS
ATTGGTTGTGACTCAGAACA+AGG 0.680575 1.4:-36926745 MS.gene068139:CDS
TAATAACAACAACAAGAGGG+AGG 0.686207 1.4:+36927660 None:intergenic
CATATACAAGAAGTTCAGAG+AGG 0.708025 1.4:-36926790 MS.gene068139:CDS
ATTGTTAAGACAACCCAAGG+AGG 0.744267 1.4:+36928187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATTATAAAAAGCTT+TGG + chr1.4:36927368-36927387 None:intergenic 15.0%
!! CATAAGTAAAATTAAAGATT+TGG + chr1.4:36927266-36927285 None:intergenic 15.0%
!!! CAAATCTTTAATTTTACTTA+TGG - chr1.4:36927264-36927283 MS.gene068139:intron 15.0%
!! TAGAAATAATGAAACTGAAT+TGG - chr1.4:36928401-36928420 MS.gene068139:CDS 20.0%
!! TATGTAGCATCAATTATTAT+TGG - chr1.4:36928018-36928037 MS.gene068139:CDS 20.0%
! AAATGGCTTGAAATATTGTA+TGG + chr1.4:36927702-36927721 None:intergenic 25.0%
! ATGTGCTTATACATATTCAT+TGG - chr1.4:36927082-36927101 MS.gene068139:CDS 25.0%
! GATATGATTGAAAATAGTAC+TGG + chr1.4:36928066-36928085 None:intergenic 25.0%
! GTAAATAACTTGAGTCAAAT+TGG - chr1.4:36927787-36927806 MS.gene068139:CDS 25.0%
!! AAAGAATATTTTTCTCCAAG+AGG + chr1.4:36927659-36927678 None:intergenic 25.0%
!! AAGAGAAATCAAATCAGTTT+TGG - chr1.4:36926862-36926881 MS.gene068139:CDS 25.0%
!! AGAGAAATCAAATCAGTTTT+GGG - chr1.4:36926863-36926882 MS.gene068139:CDS 25.0%
!! TTGTTATTATGGAAGAACAA+AGG - chr1.4:36927518-36927537 MS.gene068139:CDS 25.0%
!!! ATCCTTATATTGTCTTGTTT+AGG - chr1.4:36927958-36927977 MS.gene068139:CDS 25.0%
!!! ATTATTATTGGTTTCTGCTT+TGG - chr1.4:36928030-36928049 MS.gene068139:CDS 25.0%
!!! CTTTAATTTTACTTATGGCT+TGG - chr1.4:36927269-36927288 MS.gene068139:intron 25.0%
!!! TAAAAAGCTTTGGAATCATT+TGG + chr1.4:36927358-36927377 None:intergenic 25.0%
!!! TGATTCTGATTTTGATTTTG+AGG + chr1.4:36927625-36927644 None:intergenic 25.0%
!!! TTTTTGGCTATTTCATGATT+TGG - chr1.4:36927017-36927036 MS.gene068139:CDS 25.0%
AAAACAAAAGTTACAGCAGT+TGG + chr1.4:36927298-36927317 None:intergenic 30.0%
ACTCAACATTGTACAATGTT+GGG - chr1.4:36928109-36928128 MS.gene068139:CDS 30.0%
AGTCAAATTGGACTATCTTT+AGG - chr1.4:36927799-36927818 MS.gene068139:CDS 30.0%
ATAGATCCAAATTGCCATTA+GGG + chr1.4:36927857-36927876 None:intergenic 30.0%
ATCTAGGTAAAGTTACACAA+GGG - chr1.4:36927875-36927894 MS.gene068139:CDS 30.0%
ATGCTACATAAAGACCATTT+GGG + chr1.4:36928008-36928027 None:intergenic 30.0%
ATTGCATTTAATGTCCCAAA+TGG - chr1.4:36927991-36928010 MS.gene068139:CDS 30.0%
CCATAATAACAACAACAAGA+GGG + chr1.4:36927510-36927529 None:intergenic 30.0%
GACCTAAACAAGACAATATA+AGG + chr1.4:36927963-36927982 None:intergenic 30.0%
GGACATTAAATGCAATTAGA+AGG + chr1.4:36927987-36928006 None:intergenic 30.0%
TAACAAAGTTAAAACTCCCA+AGG - chr1.4:36927917-36927936 MS.gene068139:CDS 30.0%
TACTCAACATTGTACAATGT+TGG - chr1.4:36928108-36928127 MS.gene068139:CDS 30.0%
TATAAGCACATATTCCATAC+TGG + chr1.4:36927073-36927092 None:intergenic 30.0%
TATCTAGGTAAAGTTACACA+AGG - chr1.4:36927874-36927893 MS.gene068139:CDS 30.0%
TCAATCATATCTGAACTCTT+TGG - chr1.4:36928075-36928094 MS.gene068139:CDS 30.0%
TCCATAATAACAACAACAAG+AGG + chr1.4:36927511-36927530 None:intergenic 30.0%
TTATGGAAGAACAAAGGATT+TGG - chr1.4:36927524-36927543 MS.gene068139:CDS 30.0%
TTTATGATCATGTCAGTATC+TGG - chr1.4:36926812-36926831 MS.gene068139:CDS 30.0%
!! AGGACTAGAGAGTTTTATAA+AGG - chr1.4:36928348-36928367 MS.gene068139:CDS 30.0%
!! GTATTTTCAGGAAAGAAACA+TGG - chr1.4:36926722-36926741 MS.gene068139:CDS 30.0%
AACCAAGATAACCACTCAAA+AGG + chr1.4:36927192-36927211 None:intergenic 35.0%
AATGTGGTTATACTATGTGC+AGG + chr1.4:36927829-36927848 None:intergenic 35.0%
ACATGTCTTTAATCCTTGCA+GGG - chr1.4:36927389-36927408 MS.gene068139:CDS 35.0%
ACTAGTGTAAAGAATTTCCC+TGG - chr1.4:36927145-36927164 MS.gene068139:CDS 35.0%
ATATTCCATACTGGAGGTTT+AGG + chr1.4:36927064-36927083 None:intergenic 35.0%
ATCAAAAGCAAGTTTCCTCT+TGG - chr1.4:36927641-36927660 MS.gene068139:CDS 35.0%
ATGGCAATTTGGATCTATCT+AGG - chr1.4:36927859-36927878 MS.gene068139:CDS 35.0%
CAAAAAGAGTCATCATGTCA+AGG + chr1.4:36927729-36927748 None:intergenic 35.0%
CAACTATACTATGCCTTCTA+TGG - chr1.4:36927232-36927251 MS.gene068139:intron 35.0%
CATATACAAGAAGTTCAGAG+AGG - chr1.4:36928374-36928393 MS.gene068139:CDS 35.0%
CTCTTATGGTGCTTAATAAC+TGG + chr1.4:36927325-36927344 None:intergenic 35.0%
CTTAACAAGTATGACCCTAT+TGG + chr1.4:36928147-36928166 None:intergenic 35.0%
GATAGATCCAAATTGCCATT+AGG + chr1.4:36927858-36927877 None:intergenic 35.0%
GATGCTACATAAAGACCATT+TGG + chr1.4:36928009-36928028 None:intergenic 35.0%
GCACTATGATCATTATCATG+AGG + chr1.4:36927417-36927436 None:intergenic 35.0%
TAATAACAACAACAAGAGGG+AGG + chr1.4:36927507-36927526 None:intergenic 35.0%
TACATGTCTTTAATCCTTGC+AGG - chr1.4:36927388-36927407 MS.gene068139:CDS 35.0%
TATTCCATACTGGAGGTTTA+GGG + chr1.4:36927063-36927082 None:intergenic 35.0%
TCTAGGTAAAGTTACACAAG+GGG - chr1.4:36927876-36927895 MS.gene068139:CDS 35.0%
TGGAAGTCAATGCTACAAAT+TGG - chr1.4:36928263-36928282 MS.gene068139:CDS 35.0%
TTCAGGAAAGAAACATGGTT+GGG - chr1.4:36926727-36926746 MS.gene068139:CDS 35.0%
TTTCAGGAAAGAAACATGGT+TGG - chr1.4:36926726-36926745 MS.gene068139:CDS 35.0%
! CTTTTTGTAGCCACAATATG+TGG - chr1.4:36927742-36927761 MS.gene068139:CDS 35.0%
! GTCATACTTGTTAAGTGTGA+GGG - chr1.4:36928152-36928171 MS.gene068139:CDS 35.0%
! TTTGGAGTCATTTCCATAGA+AGG + chr1.4:36927248-36927267 None:intergenic 35.0%
!! CCCTCTTGTTGTTGTTATTA+TGG - chr1.4:36927507-36927526 MS.gene068139:CDS 35.0%
!! TGTCTCTAACTTTGGTGTTA+AGG - chr1.4:36928328-36928347 MS.gene068139:CDS 35.0%
AAATCCCTAAACCTCCAGTA+TGG - chr1.4:36927056-36927075 MS.gene068139:CDS 40.0%
AACCACATTTGTGTCCCTAA+TGG - chr1.4:36927840-36927859 MS.gene068139:CDS 40.0%
AAGAATTTCCCTGGTAGTAG+AGG - chr1.4:36927154-36927173 MS.gene068139:CDS 40.0%
AAGCACATATTCCATACTGG+AGG + chr1.4:36927070-36927089 None:intergenic 40.0%
AAGGACTTGGGATCTAACAT+AGG - chr1.4:36926923-36926942 MS.gene068139:CDS 40.0%
ATATTCTTTCCCCCAAGTAG+AGG - chr1.4:36927670-36927689 MS.gene068139:CDS 40.0%
ATCTTCCTGTTAGGACTTGA+AGG + chr1.4:36926772-36926791 None:intergenic 40.0%
ATTGGTTGTGACTCAGAACA+AGG - chr1.4:36928419-36928438 MS.gene068139:CDS 40.0%
ATTGTTAAGACAACCCAAGG+AGG + chr1.4:36926980-36926999 None:intergenic 40.0%
CAATGAAATCACACCTCCTT+GGG - chr1.4:36926964-36926983 MS.gene068139:CDS 40.0%
CATCATGTCAAGGCTGAAAA+TGG + chr1.4:36927719-36927738 None:intergenic 40.0%
CCAATTGTTAAGACAACCCA+AGG + chr1.4:36926983-36927002 None:intergenic 40.0%
CCATAAACCATCTTCCTGTT+AGG + chr1.4:36926781-36926800 None:intergenic 40.0%
CCTAACAGGAAGATGGTTTA+TGG - chr1.4:36926778-36926797 MS.gene068139:CDS 40.0%
GGTCAATAGCAAGTCCAATA+GGG - chr1.4:36928130-36928149 MS.gene068139:CDS 40.0%
TAAGGCAAATGGCAGCATTA+GGG - chr1.4:36928205-36928224 MS.gene068139:CDS 40.0%
TCAATGAAATCACACCTCCT+TGG - chr1.4:36926963-36926982 MS.gene068139:CDS 40.0%
TCTAACATAGGCATTCTCTC+AGG - chr1.4:36926935-36926954 MS.gene068139:CDS 40.0%
TCTATGACAAAGAAGCCCTA+AGG - chr1.4:36928187-36928206 MS.gene068139:CDS 40.0%
TCTCATTGTTCAACCAACAC+TGG - chr1.4:36927112-36927131 MS.gene068139:CDS 40.0%
TCTTCCTGTTAGGACTTGAA+GGG + chr1.4:36926771-36926790 None:intergenic 40.0%
TGGGTTGTCTTAACAATTGG+TGG - chr1.4:36926983-36927002 MS.gene068139:CDS 40.0%
TTCAAGTCCTAACAGGAAGA+TGG - chr1.4:36926771-36926790 MS.gene068139:CDS 40.0%
TTGAGCTTCTTCAAGGACTT+GGG - chr1.4:36926911-36926930 MS.gene068139:CDS 40.0%
TTGGTTGTTCAGCTCTCTTA+TGG + chr1.4:36927339-36927358 None:intergenic 40.0%
TTGTGTCCCTAATGGCAATT+TGG - chr1.4:36927848-36927867 MS.gene068139:CDS 40.0%
! AGTGGTTATCTTGGTTTGAG+TGG - chr1.4:36927196-36927215 MS.gene068139:intron 40.0%
! CCTTGGGTTGTCTTAACAAT+TGG - chr1.4:36926980-36926999 MS.gene068139:CDS 40.0%
! GGTCATACTTGTTAAGTGTG+AGG - chr1.4:36928151-36928170 MS.gene068139:CDS 40.0%
! GTTTCTGCTTTGGTGCAAAT+TGG - chr1.4:36928040-36928059 MS.gene068139:CDS 40.0%
! TAATGCTGCCATTTGCCTTA+GGG + chr1.4:36928205-36928224 None:intergenic 40.0%
!! GAGCAAGAGAAGCATCAAAA+TGG + chr1.4:36927482-36927501 None:intergenic 40.0%
!!! GGTGGTCTTCTCAACTTTTT+TGG - chr1.4:36927001-36927020 MS.gene068139:CDS 40.0%
AGGATTGATGTGAGCATGAG+AGG + chr1.4:36927943-36927962 None:intergenic 45.0%
AGTGACTAAAGCTCCAGTGT+TGG + chr1.4:36927128-36927147 None:intergenic 45.0%
ATGACAACACCTCTACTACC+AGG + chr1.4:36927166-36927185 None:intergenic 45.0%
CAAAGAAGCCCTAAGGCAAA+TGG - chr1.4:36928194-36928213 MS.gene068139:CDS 45.0%
CACTCTCTTGAGCTTCTTCA+AGG - chr1.4:36926904-36926923 MS.gene068139:CDS 45.0%
CATGGTTGGGAAAACACCAA+AGG - chr1.4:36926740-36926759 MS.gene068139:CDS 45.0%
CTAAGGCAAATGGCAGCATT+AGG - chr1.4:36928204-36928223 MS.gene068139:CDS 45.0%
CTTGAGCTTCTTCAAGGACT+TGG - chr1.4:36926910-36926929 MS.gene068139:CDS 45.0%
GAGGTGTGATTTCATTGAGC+AGG + chr1.4:36926961-36926980 None:intergenic 45.0%
GGCACTTGTGTCTCTAACTT+TGG - chr1.4:36928320-36928339 MS.gene068139:CDS 45.0%
GGGTCAATAGCAAGTCCAAT+AGG - chr1.4:36928129-36928148 MS.gene068139:CDS 45.0%
GTAGCCACAATATGTGGACT+TGG - chr1.4:36927748-36927767 MS.gene068139:CDS 45.0%
GTTGTGACTCAGAACAAGGT+TGG - chr1.4:36928423-36928442 MS.gene068139:CDS 45.0%
TAGGGTTAAAGAGGAAGCCA+GGG - chr1.4:36928223-36928242 MS.gene068139:CDS 45.0%
TATGGTCTTCGCCTCTACTT+GGG + chr1.4:36927684-36927703 None:intergenic 45.0%
TCAAGAGAGTGAGAGTGGAT+TGG + chr1.4:36926895-36926914 None:intergenic 45.0%
TCCACCAAGTCCACATATTG+TGG + chr1.4:36927755-36927774 None:intergenic 45.0%
TGACAACACCTCTACTACCA+GGG + chr1.4:36927165-36927184 None:intergenic 45.0%
TGCCATTAGGGACACAAATG+TGG + chr1.4:36927845-36927864 None:intergenic 45.0%
TGGCAGCATTAGGGTTAAAG+AGG - chr1.4:36928214-36928233 MS.gene068139:CDS 45.0%
TTAGGGTTAAAGAGGAAGCC+AGG - chr1.4:36928222-36928241 MS.gene068139:CDS 45.0%
TTATCATGAGGAACCCTGCA+AGG + chr1.4:36927405-36927424 None:intergenic 45.0%
TTCACCCTTCAAGTCCTAAC+AGG - chr1.4:36926764-36926783 MS.gene068139:CDS 45.0%
TTGTTAAGTGTGAGGGTTGC+TGG - chr1.4:36928159-36928178 MS.gene068139:CDS 45.0%
! ACTTGGTGGAACTCTTACTG+TGG - chr1.4:36927765-36927784 MS.gene068139:CDS 45.0%
! ATCACTGCTGTTAGCCTCTT+AGG - chr1.4:36928297-36928316 MS.gene068139:CDS 45.0%
! CTAATGCTGCCATTTGCCTT+AGG + chr1.4:36928206-36928225 None:intergenic 45.0%
! GTTGTCATAGGCCTTTTGAG+TGG - chr1.4:36927178-36927197 MS.gene068139:CDS 45.0%
! TCACTGCTGTTAGCCTCTTA+GGG - chr1.4:36928298-36928317 MS.gene068139:CDS 45.0%
! TCTGGAGCAAGCTACATGTT+TGG - chr1.4:36926830-36926849 MS.gene068139:CDS 45.0%
!! GGCCTTTTGAGTGGTTATCT+TGG - chr1.4:36927187-36927206 MS.gene068139:CDS 45.0%
!! GGTAGTAGAGGTGTTGTCAT+AGG - chr1.4:36927166-36927185 MS.gene068139:CDS 45.0%
AGGGTTAAAGAGGAAGCCAG+GGG - chr1.4:36928224-36928243 MS.gene068139:CDS 50.0%
ATGGTCTTCGCCTCTACTTG+GGG + chr1.4:36927683-36927702 None:intergenic 50.0%
ATGTGAGCATGAGAGGCCTT+GGG + chr1.4:36927936-36927955 None:intergenic 50.0%
CCACAGACTCACCAATCTAC+AGG - chr1.4:36927592-36927611 MS.gene068139:CDS 50.0%
CCTGTAGATTGGTGAGTCTG+TGG + chr1.4:36927595-36927614 None:intergenic 50.0%
GAAGCTCAAGAGAGTGAGAG+TGG + chr1.4:36926900-36926919 None:intergenic 50.0%
GACTTGAAGGGTGAAGCCTT+TGG + chr1.4:36926759-36926778 None:intergenic 50.0%
GAGGAGTCTCTCCTGTAGAT+TGG + chr1.4:36927606-36927625 None:intergenic 50.0%
GATTGGTGAGTCTGTGGCTT+AGG + chr1.4:36927589-36927608 None:intergenic 50.0%
GCCACAATATGTGGACTTGG+TGG - chr1.4:36927751-36927770 MS.gene068139:CDS 50.0%
GGGGAGGAGTTGAATTGCAA+TGG - chr1.4:36928243-36928262 MS.gene068139:CDS 50.0%
GTATGGTCTTCGCCTCTACT+TGG + chr1.4:36927685-36927704 None:intergenic 50.0%
TTGCAATTCAACTCCTCCCC+TGG + chr1.4:36928243-36928262 None:intergenic 50.0%
! CACTGCTGTTAGCCTCTTAG+GGG - chr1.4:36928299-36928318 MS.gene068139:CDS 50.0%
GAGACACAAGTGCCCCTAAG+AGG + chr1.4:36928314-36928333 None:intergenic 55.0%
GATGTGAGCATGAGAGGCCT+TGG + chr1.4:36927937-36927956 None:intergenic 55.0%
GTTAAAGAGGAAGCCAGGGG+AGG - chr1.4:36928227-36928246 MS.gene068139:CDS 55.0%
TGAGTCTGTGGCTTAGGAGG+AGG + chr1.4:36927583-36927602 None:intergenic 55.0%
TGGTCTTCGCCTCTACTTGG+GGG + chr1.4:36927682-36927701 None:intergenic 55.0%
TGGTGAGTCTGTGGCTTAGG+AGG + chr1.4:36927586-36927605 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 36926719 36928467 36926719 ID=MS.gene068139
chr1.4 mRNA 36926719 36928467 36926719 ID=MS.gene068139.t1;Parent=MS.gene068139
chr1.4 exon 36927306 36928467 36927306 ID=MS.gene068139.t1.exon1;Parent=MS.gene068139.t1
chr1.4 CDS 36927306 36928467 36927306 ID=cds.MS.gene068139.t1;Parent=MS.gene068139.t1
chr1.4 exon 36926719 36927206 36926719 ID=MS.gene068139.t1.exon2;Parent=MS.gene068139.t1
chr1.4 CDS 36926719 36927206 36926719 ID=cds.MS.gene068139.t1;Parent=MS.gene068139.t1
Gene Sequence

>MS.gene068139

ATGGTATTTTCAGGAAAGAAACATGGTTGGGAAAACACCAAAGGCTTCACCCTTCAAGTCCTAACAGGAAGATGGTTTATGGTGTTTTCATCATTTATGATCATGTCAGTATCTGGAGCAAGCTACATGTTTGGACTATACTCAAGAGAAATCAAATCAGTTTTGGGTTATGACCAATCCACTCTCACTCTCTTGAGCTTCTTCAAGGACTTGGGATCTAACATAGGCATTCTCTCAGGCCTGCTCAATGAAATCACACCTCCTTGGGTTGTCTTAACAATTGGTGGTCTTCTCAACTTTTTTGGCTATTTCATGATTTGGCTTGCAGTAACAAGAAAAATCCCTAAACCTCCAGTATGGAATATGTGCTTATACATATTCATTGGAGCAAATTCTCATTGTTCAACCAACACTGGAGCTTTAGTCACTAGTGTAAAGAATTTCCCTGGTAGTAGAGGTGTTGTCATAGGCCTTTTGAGTGGTTATCTTGGTTTGAGTGGAGCTATCATTACTCAACTATACTATGCCTTCTATGGAAATGACTCCAAATCTTTAATTTTACTTATGGCTTGGTTACCAACTGCTGTAACTTTTGTTTTTATGCCAGTTATTAAGCACCATAAGAGAGCTGAACAACCAAATGATTCCAAAGCTTTTTATAATTTTCTTTACATGTCTTTAATCCTTGCAGGGTTCCTCATGATAATGATCATAGTGCAAAAATGTTTCAACTTTACTAAGAGTGAGTATTATGTCACTTCCATTTTGATGCTTCTCTTGCTCATCCTCCCTCTTGTTGTTGTTATTATGGAAGAACAAAGGATTTGGAAGTACAAAAAAGAGCAAATCAATGTTGAAGATCCTCCTCCTAAGCCACAGACTCACCAATCTACAGGAGAGACTCCTCAAAATCAAAATCAGAATCAAAAGCAAGTTTCCTCTTGGAGAAAAATATTCTTTCCCCCAAGTAGAGGCGAAGACCATACAATATTTCAAGCCATTTTCAGCCTTGACATGATGACTCTTTTTGTAGCCACAATATGTGGACTTGGTGGAACTCTTACTGTGGTAAATAACTTGAGTCAAATTGGACTATCTTTAGGATATCCTGCACATAGTATAACCACATTTGTGTCCCTAATGGCAATTTGGATCTATCTAGGTAAAGTTACACAAGGGGTTATCTCAGAATTTATCATAACAAAGTTAAAACTCCCAAGGCCTCTCATGCTCACATCAATCCTTATATTGTCTTGTTTAGGTCACCTTCTAATTGCATTTAATGTCCCAAATGGTCTTTATGTAGCATCAATTATTATTGGTTTCTGCTTTGGTGCAAATTGGCCAGTACTATTTTCAATCATATCTGAACTCTTTGGTCTTAAATATTACTCAACATTGTACAATGTTGGGTCAATAGCAAGTCCAATAGGGTCATACTTGTTAAGTGTGAGGGTTGCTGGTCATCTCTATGACAAAGAAGCCCTAAGGCAAATGGCAGCATTAGGGTTAAAGAGGAAGCCAGGGGAGGAGTTGAATTGCAATGGAAGTCAATGCTACAAATTGGCTTTCATTATAATCACTGCTGTTAGCCTCTTAGGGGCACTTGTGTCTCTAACTTTGGTGTTAAGGACTAGAGAGTTTTATAAAGGTGACATATACAAGAAGTTCAGAGAGGAAGCTAGAAATAATGAAACTGAATTGGTTGTGACTCAGAACAAGGTTGGACCTGCCTCAAATGATGCATAG

Protein sequence

>MS.gene068139.t1

MVFSGKKHGWENTKGFTLQVLTGRWFMVFSSFMIMSVSGASYMFGLYSREIKSVLGYDQSTLTLLSFFKDLGSNIGILSGLLNEITPPWVVLTIGGLLNFFGYFMIWLAVTRKIPKPPVWNMCLYIFIGANSHCSTNTGALVTSVKNFPGSRGVVIGLLSGYLGLSGAIITQLYYAFYGNDSKSLILLMAWLPTAVTFVFMPVIKHHKRAEQPNDSKAFYNFLYMSLILAGFLMIMIIVQKCFNFTKSEYYVTSILMLLLLILPLVVVIMEEQRIWKYKKEQINVEDPPPKPQTHQSTGETPQNQNQNQKQVSSWRKIFFPPSRGEDHTIFQAIFSLDMMTLFVATICGLGGTLTVVNNLSQIGLSLGYPAHSITTFVSLMAIWIYLGHLLIAFNVPNGLYVASIIIGFCFGANWPVLFSIISELFGLKYYSTLYNVGSIASPIGSYLLSVRVAGHLYDKEALRQMAALGLKRKPGEELNCNGSQCYKLAFIIITAVSLLGALVSLTLVLRTREFYKGDIYKKFREEARNNETELVVTQNKVGPASNDA