Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068139.t1 | XP_003590250.1 | 83.5 | 595 | 51 | 2 | 1 | 548 | 1 | 595 | 3.40E-256 | 894 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068139.t1 | F4I9E1 | 23.0 | 534 | 356 | 12 | 24 | 516 | 43 | 562 | 3.6e-20 | 101.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068139.t1 | G7I7D1 | 83.5 | 595 | 51 | 2 | 1 | 548 | 1 | 595 | 2.4e-256 | 894.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05105 | MS.gene068139 | 0.803319 | 3.69E-49 | -1.69E-46 |
MS.gene055116 | MS.gene068139 | 0.824383 | 8.31E-54 | -1.69E-46 |
MS.gene056659 | MS.gene068139 | 0.823623 | 1.25E-53 | -1.69E-46 |
MS.gene057749 | MS.gene068139 | 0.800145 | 1.65E-48 | -1.69E-46 |
MS.gene059420 | MS.gene068139 | 0.810362 | 1.20E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068139.t1 | MTR_1g050550 | 89.244 | 595 | 17 | 3 | 1 | 548 | 1 | 595 | 0.0 | 1057 |
MS.gene068139.t1 | MTR_1g059080 | 81.942 | 587 | 68 | 3 | 1 | 549 | 1 | 587 | 0.0 | 939 |
MS.gene068139.t1 | MTR_1g111510 | 57.094 | 585 | 206 | 4 | 8 | 549 | 10 | 592 | 0.0 | 671 |
MS.gene068139.t1 | MTR_1g111540 | 56.971 | 581 | 202 | 5 | 8 | 548 | 10 | 582 | 0.0 | 663 |
MS.gene068139.t1 | MTR_1g111530 | 57.672 | 567 | 198 | 3 | 8 | 534 | 6 | 570 | 0.0 | 662 |
MS.gene068139.t1 | MTR_1g111550 | 56.849 | 584 | 202 | 6 | 11 | 549 | 12 | 590 | 0.0 | 650 |
MS.gene068139.t1 | MTR_7g102880 | 54.392 | 592 | 223 | 5 | 4 | 548 | 9 | 600 | 0.0 | 620 |
MS.gene068139.t1 | MTR_5g090570 | 34.128 | 545 | 295 | 7 | 24 | 526 | 11 | 533 | 1.34e-95 | 301 |
MS.gene068139.t1 | MTR_2g100400 | 32.092 | 564 | 302 | 8 | 21 | 529 | 4 | 541 | 3.57e-94 | 298 |
MS.gene068139.t1 | MTR_7g029015 | 33.564 | 578 | 296 | 13 | 24 | 523 | 15 | 582 | 5.36e-87 | 280 |
MS.gene068139.t1 | MTR_3g099150 | 32.305 | 551 | 305 | 12 | 24 | 517 | 15 | 554 | 3.12e-82 | 267 |
MS.gene068139.t1 | MTR_4g073690 | 32.523 | 535 | 305 | 8 | 24 | 517 | 15 | 534 | 2.92e-75 | 248 |
MS.gene068139.t1 | MTR_5g022380 | 29.710 | 552 | 308 | 11 | 24 | 530 | 13 | 529 | 2.26e-73 | 243 |
MS.gene068139.t1 | MTR_2g450710 | 29.562 | 548 | 324 | 8 | 25 | 517 | 13 | 553 | 6.06e-70 | 235 |
MS.gene068139.t1 | MTR_4g116210 | 28.885 | 547 | 308 | 13 | 39 | 517 | 26 | 559 | 1.69e-65 | 223 |
MS.gene068139.t1 | MTR_4g073690 | 33.511 | 376 | 236 | 6 | 24 | 391 | 15 | 384 | 3.45e-51 | 180 |
MS.gene068139.t1 | MTR_5g022380 | 28.634 | 454 | 244 | 11 | 122 | 530 | 1 | 419 | 4.78e-51 | 181 |
MS.gene068139.t1 | MTR_3g466040 | 25.989 | 531 | 338 | 11 | 21 | 517 | 4 | 513 | 7.94e-32 | 129 |
MS.gene068139.t1 | MTR_7g083660 | 26.609 | 575 | 335 | 17 | 24 | 531 | 7 | 561 | 2.36e-30 | 125 |
MS.gene068139.t1 | MTR_3g466110 | 24.498 | 498 | 311 | 10 | 22 | 474 | 5 | 482 | 1.99e-26 | 113 |
MS.gene068139.t1 | MTR_5g026350 | 26.027 | 584 | 333 | 22 | 24 | 529 | 7 | 569 | 2.12e-24 | 107 |
MS.gene068139.t1 | MTR_2g104250 | 30.348 | 201 | 120 | 5 | 322 | 517 | 104 | 289 | 7.94e-24 | 102 |
MS.gene068139.t1 | MTR_5g095240 | 60.563 | 71 | 28 | 0 | 453 | 523 | 2 | 72 | 2.13e-23 | 94.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068139.t1 | AT2G39210 | 58.602 | 558 | 185 | 4 | 14 | 527 | 11 | 566 | 0.0 | 666 |
MS.gene068139.t1 | AT2G28120 | 54.371 | 572 | 219 | 4 | 9 | 541 | 2 | 570 | 0.0 | 617 |
MS.gene068139.t1 | AT1G74780 | 34.705 | 559 | 290 | 6 | 18 | 527 | 1 | 533 | 4.84e-103 | 320 |
MS.gene068139.t1 | AT1G18940 | 33.877 | 552 | 284 | 7 | 19 | 523 | 4 | 521 | 4.86e-92 | 292 |
MS.gene068139.t1 | AT2G34350 | 33.272 | 547 | 287 | 9 | 24 | 523 | 7 | 522 | 1.25e-91 | 291 |
MS.gene068139.t1 | AT2G34350 | 33.272 | 547 | 287 | 9 | 24 | 523 | 7 | 522 | 1.25e-91 | 291 |
MS.gene068139.t1 | AT5G14120 | 32.984 | 573 | 309 | 11 | 21 | 525 | 13 | 578 | 6.72e-89 | 285 |
MS.gene068139.t1 | AT2G34355 | 32.971 | 552 | 292 | 9 | 18 | 523 | 1 | 520 | 1.19e-88 | 283 |
MS.gene068139.t1 | AT3G01930 | 31.293 | 588 | 320 | 10 | 11 | 525 | 7 | 583 | 6.29e-86 | 278 |
MS.gene068139.t1 | AT5G50520 | 31.648 | 534 | 305 | 8 | 24 | 516 | 16 | 530 | 7.20e-86 | 276 |
MS.gene068139.t1 | AT5G50630 | 31.648 | 534 | 305 | 8 | 24 | 516 | 16 | 530 | 7.20e-86 | 276 |
MS.gene068139.t1 | AT2G16660 | 32.523 | 535 | 302 | 8 | 24 | 517 | 14 | 530 | 2.50e-79 | 259 |
MS.gene068139.t1 | AT4G34950 | 31.196 | 577 | 300 | 13 | 24 | 530 | 16 | 565 | 6.31e-77 | 253 |
MS.gene068139.t1 | AT1G80530 | 29.236 | 537 | 306 | 11 | 38 | 518 | 27 | 545 | 1.46e-62 | 215 |
MS.gene068139.t1 | AT3G01930 | 31.429 | 420 | 240 | 7 | 11 | 390 | 7 | 418 | 5.02e-58 | 200 |
MS.gene068139.t1 | AT3G01930 | 29.769 | 477 | 255 | 9 | 122 | 525 | 1 | 470 | 1.42e-56 | 197 |
MS.gene068139.t1 | AT2G34355 | 31.172 | 401 | 206 | 8 | 161 | 523 | 2 | 370 | 7.08e-53 | 184 |
MS.gene068139.t1 | AT2G16660 | 33.333 | 375 | 235 | 6 | 24 | 391 | 14 | 380 | 1.23e-51 | 181 |
MS.gene068139.t1 | AT3G01630 | 24.680 | 547 | 334 | 14 | 24 | 517 | 23 | 544 | 4.73e-29 | 121 |
MS.gene068139.t1 | AT3G01630 | 24.725 | 546 | 333 | 13 | 24 | 516 | 41 | 561 | 6.18e-29 | 121 |
MS.gene068139.t1 | AT1G31470 | 25.906 | 552 | 335 | 15 | 18 | 517 | 34 | 563 | 3.60e-25 | 110 |
MS.gene068139.t1 | AT4G19450 | 24.786 | 585 | 334 | 16 | 24 | 529 | 7 | 564 | 4.21e-25 | 109 |
MS.gene068139.t1 | AT2G30300 | 23.704 | 540 | 313 | 13 | 25 | 516 | 8 | 496 | 1.06e-21 | 99.0 |
MS.gene068139.t1 | AT4G19450 | 24.519 | 416 | 253 | 11 | 24 | 393 | 7 | 407 | 1.45e-20 | 94.7 |
MS.gene068139.t1 | AT5G45275 | 30.570 | 193 | 132 | 2 | 24 | 215 | 7 | 198 | 6.23e-18 | 87.4 |
Find 128 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTCTTGTTGTTGTTATTA+TGG | 0.134860 | 1.4:-36927657 | MS.gene068139:CDS |
ATCACTGCTGTTAGCCTCTT+AGG | 0.193163 | 1.4:-36926867 | MS.gene068139:CDS |
AAGAGAAATCAAATCAGTTT+TGG | 0.212226 | 1.4:-36928302 | MS.gene068139:CDS |
TACATGTCTTTAATCCTTGC+AGG | 0.243168 | 1.4:-36927776 | MS.gene068139:CDS |
ATATTCCATACTGGAGGTTT+AGG | 0.248049 | 1.4:+36928103 | None:intergenic |
AGTCAAATTGGACTATCTTT+AGG | 0.254810 | 1.4:-36927365 | MS.gene068139:CDS |
CTTGAGCTTCTTCAAGGACT+TGG | 0.257995 | 1.4:-36928254 | MS.gene068139:CDS |
GTAAATAACTTGAGTCAAAT+TGG | 0.269728 | 1.4:-36927377 | MS.gene068139:CDS |
CCTAACAGGAAGATGGTTTA+TGG | 0.270560 | 1.4:-36928386 | MS.gene068139:CDS |
ATTATTATTGGTTTCTGCTT+TGG | 0.272391 | 1.4:-36927134 | MS.gene068139:CDS |
TTGTGTCCCTAATGGCAATT+TGG | 0.273307 | 1.4:-36927316 | MS.gene068139:CDS |
CAACTATACTATGCCTTCTA+TGG | 0.279543 | 1.4:-36927932 | MS.gene068139:CDS |
TATGTAGCATCAATTATTAT+TGG | 0.308067 | 1.4:-36927146 | MS.gene068139:CDS |
TTGGTTGTTCAGCTCTCTTA+TGG | 0.310124 | 1.4:+36927828 | None:intergenic |
CACTCTCTTGAGCTTCTTCA+AGG | 0.315653 | 1.4:-36928260 | MS.gene068139:CDS |
TCAATCATATCTGAACTCTT+TGG | 0.320938 | 1.4:-36927089 | MS.gene068139:CDS |
TTTGGAGTCATTTCCATAGA+AGG | 0.324553 | 1.4:+36927919 | None:intergenic |
CTAAGGCAAATGGCAGCATT+AGG | 0.325989 | 1.4:-36926960 | MS.gene068139:CDS |
CATAAGTAAAATTAAAGATT+TGG | 0.327529 | 1.4:+36927901 | None:intergenic |
CTAATGCTGCCATTTGCCTT+AGG | 0.327977 | 1.4:+36926961 | None:intergenic |
CATCATGTCAAGGCTGAAAA+TGG | 0.337307 | 1.4:+36927448 | None:intergenic |
TATTCCATACTGGAGGTTTA+GGG | 0.337312 | 1.4:+36928104 | None:intergenic |
TGTCTCTAACTTTGGTGTTA+AGG | 0.341183 | 1.4:-36926836 | MS.gene068139:CDS |
CCTTGGGTTGTCTTAACAAT+TGG | 0.343987 | 1.4:-36928184 | MS.gene068139:CDS |
GTTTCTGCTTTGGTGCAAAT+TGG | 0.344739 | 1.4:-36927124 | MS.gene068139:CDS |
TTTATGATCATGTCAGTATC+TGG | 0.347170 | 1.4:-36928352 | MS.gene068139:CDS |
TTGTTAAGTGTGAGGGTTGC+TGG | 0.349828 | 1.4:-36927005 | MS.gene068139:CDS |
GGACATTAAATGCAATTAGA+AGG | 0.350651 | 1.4:+36927180 | None:intergenic |
GATAGATCCAAATTGCCATT+AGG | 0.350724 | 1.4:+36927309 | None:intergenic |
CTCTTATGGTGCTTAATAAC+TGG | 0.351299 | 1.4:+36927842 | None:intergenic |
GTATGGTCTTCGCCTCTACT+TGG | 0.352552 | 1.4:+36927482 | None:intergenic |
TGGAAGTCAATGCTACAAAT+TGG | 0.355269 | 1.4:-36926901 | MS.gene068139:CDS |
TTATGGAAGAACAAAGGATT+TGG | 0.359352 | 1.4:-36927640 | MS.gene068139:CDS |
GATGCTACATAAAGACCATT+TGG | 0.367090 | 1.4:+36927158 | None:intergenic |
TAGAAATAATGAAACTGAAT+TGG | 0.371893 | 1.4:-36926763 | MS.gene068139:CDS |
TAATGCTGCCATTTGCCTTA+GGG | 0.382095 | 1.4:+36926962 | None:intergenic |
GGGTCAATAGCAAGTCCAAT+AGG | 0.385410 | 1.4:-36927035 | MS.gene068139:CDS |
GAGCAAGAGAAGCATCAAAA+TGG | 0.387481 | 1.4:+36927685 | None:intergenic |
ATAGATCCAAATTGCCATTA+GGG | 0.390342 | 1.4:+36927310 | None:intergenic |
GGCACTTGTGTCTCTAACTT+TGG | 0.390758 | 1.4:-36926844 | MS.gene068139:CDS |
TGGGTTGTCTTAACAATTGG+TGG | 0.401882 | 1.4:-36928181 | MS.gene068139:CDS |
CAATGAAATCACACCTCCTT+GGG | 0.404458 | 1.4:-36928200 | MS.gene068139:CDS |
ATCTTCCTGTTAGGACTTGA+AGG | 0.405331 | 1.4:+36928395 | None:intergenic |
TTCACCCTTCAAGTCCTAAC+AGG | 0.407883 | 1.4:-36928400 | MS.gene068139:CDS |
CCATAAACCATCTTCCTGTT+AGG | 0.408283 | 1.4:+36928386 | None:intergenic |
TCACTGCTGTTAGCCTCTTA+GGG | 0.413238 | 1.4:-36926866 | MS.gene068139:CDS |
CTTAACAAGTATGACCCTAT+TGG | 0.415970 | 1.4:+36927020 | None:intergenic |
GAGGAGTCTCTCCTGTAGAT+TGG | 0.418500 | 1.4:+36927561 | None:intergenic |
AAATCCCTAAACCTCCAGTA+TGG | 0.420351 | 1.4:-36928108 | MS.gene068139:CDS |
GATTGGTGAGTCTGTGGCTT+AGG | 0.421686 | 1.4:+36927578 | None:intergenic |
ATCAAAAGCAAGTTTCCTCT+TGG | 0.423901 | 1.4:-36927523 | MS.gene068139:CDS |
TATGGTCTTCGCCTCTACTT+GGG | 0.428857 | 1.4:+36927483 | None:intergenic |
ATGGCAATTTGGATCTATCT+AGG | 0.429608 | 1.4:-36927305 | MS.gene068139:intron |
ATGTGCTTATACATATTCAT+TGG | 0.430843 | 1.4:-36928082 | MS.gene068139:CDS |
TACTCAACATTGTACAATGT+TGG | 0.432900 | 1.4:-36927056 | MS.gene068139:CDS |
TTGAGCTTCTTCAAGGACTT+GGG | 0.443522 | 1.4:-36928253 | MS.gene068139:CDS |
TTCAGGAAAGAAACATGGTT+GGG | 0.444001 | 1.4:-36928437 | MS.gene068139:CDS |
ACTCAACATTGTACAATGTT+GGG | 0.445413 | 1.4:-36927055 | MS.gene068139:CDS |
TCTGGAGCAAGCTACATGTT+TGG | 0.448168 | 1.4:-36928334 | MS.gene068139:CDS |
TTGCAATTCAACTCCTCCCC+TGG | 0.457387 | 1.4:+36926924 | None:intergenic |
GGTAGTAGAGGTGTTGTCAT+AGG | 0.459692 | 1.4:-36927998 | MS.gene068139:CDS |
ATGCTACATAAAGACCATTT+GGG | 0.460886 | 1.4:+36927159 | None:intergenic |
TCAATGAAATCACACCTCCT+TGG | 0.465198 | 1.4:-36928201 | MS.gene068139:CDS |
TATAAGCACATATTCCATAC+TGG | 0.466541 | 1.4:+36928094 | None:intergenic |
TTAGGGTTAAAGAGGAAGCC+AGG | 0.467861 | 1.4:-36926942 | MS.gene068139:CDS |
ATTGCATTTAATGTCCCAAA+TGG | 0.471433 | 1.4:-36927173 | MS.gene068139:CDS |
GACTTGAAGGGTGAAGCCTT+TGG | 0.479566 | 1.4:+36928408 | None:intergenic |
AACCACATTTGTGTCCCTAA+TGG | 0.479854 | 1.4:-36927324 | MS.gene068139:CDS |
TAAGGCAAATGGCAGCATTA+GGG | 0.486171 | 1.4:-36926959 | MS.gene068139:CDS |
CAAAGAAGCCCTAAGGCAAA+TGG | 0.493202 | 1.4:-36926970 | MS.gene068139:CDS |
ATCTGTCTATGCATCATTTG+AGG | 0.496384 | 1.4:+36926713 | None:intergenic |
ACATGTCTTTAATCCTTGCA+GGG | 0.496948 | 1.4:-36927775 | MS.gene068139:CDS |
GTCATACTTGTTAAGTGTGA+GGG | 0.503976 | 1.4:-36927012 | MS.gene068139:CDS |
TTCAAGTCCTAACAGGAAGA+TGG | 0.508794 | 1.4:-36928393 | MS.gene068139:CDS |
TGGCAGCATTAGGGTTAAAG+AGG | 0.518733 | 1.4:-36926950 | MS.gene068139:CDS |
GAGGTGTGATTTCATTGAGC+AGG | 0.519942 | 1.4:+36928206 | None:intergenic |
GTCTATGCATCATTTGAGGC+AGG | 0.522205 | 1.4:+36926717 | None:intergenic |
AAATGGCTTGAAATATTGTA+TGG | 0.522674 | 1.4:+36927465 | None:intergenic |
AGTGGTTATCTTGGTTTGAG+TGG | 0.525713 | 1.4:-36927968 | MS.gene068139:CDS |
AAAACAAAAGTTACAGCAGT+TGG | 0.525937 | 1.4:+36927869 | None:intergenic |
GATATGATTGAAAATAGTAC+TGG | 0.527060 | 1.4:+36927101 | None:intergenic |
TGGTGAGTCTGTGGCTTAGG+AGG | 0.531187 | 1.4:+36927581 | None:intergenic |
TTTCAGGAAAGAAACATGGT+TGG | 0.532488 | 1.4:-36928438 | MS.gene068139:CDS |
AACCAAGATAACCACTCAAA+AGG | 0.532585 | 1.4:+36927975 | None:intergenic |
TAGGGTTAAAGAGGAAGCCA+GGG | 0.536413 | 1.4:-36926941 | MS.gene068139:CDS |
TGAGTCTGTGGCTTAGGAGG+AGG | 0.538831 | 1.4:+36927584 | None:intergenic |
TCCATAATAACAACAACAAG+AGG | 0.549935 | 1.4:+36927656 | None:intergenic |
GTAGCCACAATATGTGGACT+TGG | 0.551117 | 1.4:-36927416 | MS.gene068139:CDS |
GGTCAATAGCAAGTCCAATA+GGG | 0.554065 | 1.4:-36927034 | MS.gene068139:CDS |
GTTGTGACTCAGAACAAGGT+TGG | 0.560023 | 1.4:-36926741 | MS.gene068139:CDS |
AAGAATTTCCCTGGTAGTAG+AGG | 0.560197 | 1.4:-36928010 | MS.gene068139:CDS |
TCTAACATAGGCATTCTCTC+AGG | 0.560326 | 1.4:-36928229 | MS.gene068139:CDS |
GAGACACAAGTGCCCCTAAG+AGG | 0.560359 | 1.4:+36926853 | None:intergenic |
CCACAGACTCACCAATCTAC+AGG | 0.561675 | 1.4:-36927572 | MS.gene068139:CDS |
ATGGTCTTCGCCTCTACTTG+GGG | 0.561692 | 1.4:+36927484 | None:intergenic |
GAAGCTCAAGAGAGTGAGAG+TGG | 0.562224 | 1.4:+36928267 | None:intergenic |
GGGGAGGAGTTGAATTGCAA+TGG | 0.565523 | 1.4:-36926921 | MS.gene068139:CDS |
TCCACCAAGTCCACATATTG+TGG | 0.566013 | 1.4:+36927412 | None:intergenic |
ATGACAACACCTCTACTACC+AGG | 0.567626 | 1.4:+36928001 | None:intergenic |
TCAAGAGAGTGAGAGTGGAT+TGG | 0.568198 | 1.4:+36928272 | None:intergenic |
CCTGTAGATTGGTGAGTCTG+TGG | 0.569629 | 1.4:+36927572 | None:intergenic |
TCTCATTGTTCAACCAACAC+TGG | 0.569882 | 1.4:-36928052 | MS.gene068139:CDS |
AATGTGGTTATACTATGTGC+AGG | 0.572229 | 1.4:+36927338 | None:intergenic |
AAGGACTTGGGATCTAACAT+AGG | 0.575857 | 1.4:-36928241 | MS.gene068139:CDS |
TGCCATTAGGGACACAAATG+TGG | 0.577289 | 1.4:+36927322 | None:intergenic |
TTGTTATTATGGAAGAACAA+AGG | 0.585080 | 1.4:-36927646 | MS.gene068139:CDS |
GGTCATACTTGTTAAGTGTG+AGG | 0.586817 | 1.4:-36927013 | MS.gene068139:CDS |
GCACTATGATCATTATCATG+AGG | 0.591440 | 1.4:+36927750 | None:intergenic |
ACTAGTGTAAAGAATTTCCC+TGG | 0.597323 | 1.4:-36928019 | MS.gene068139:CDS |
GCCACAATATGTGGACTTGG+TGG | 0.598104 | 1.4:-36927413 | MS.gene068139:CDS |
TCTATGACAAAGAAGCCCTA+AGG | 0.600638 | 1.4:-36926977 | MS.gene068139:CDS |
CACTGCTGTTAGCCTCTTAG+GGG | 0.603640 | 1.4:-36926865 | MS.gene068139:CDS |
TTATCATGAGGAACCCTGCA+AGG | 0.614007 | 1.4:+36927762 | None:intergenic |
CCAATTGTTAAGACAACCCA+AGG | 0.620677 | 1.4:+36928184 | None:intergenic |
GTTAAAGAGGAAGCCAGGGG+AGG | 0.622388 | 1.4:-36926937 | MS.gene068139:CDS |
TCTTCCTGTTAGGACTTGAA+GGG | 0.625189 | 1.4:+36928396 | None:intergenic |
TGACAACACCTCTACTACCA+GGG | 0.633964 | 1.4:+36928002 | None:intergenic |
AGTGACTAAAGCTCCAGTGT+TGG | 0.645448 | 1.4:+36928039 | None:intergenic |
AAGCACATATTCCATACTGG+AGG | 0.647458 | 1.4:+36928097 | None:intergenic |
TGGTCTTCGCCTCTACTTGG+GGG | 0.657723 | 1.4:+36927485 | None:intergenic |
CCATAATAACAACAACAAGA+GGG | 0.664165 | 1.4:+36927657 | None:intergenic |
AGGGTTAAAGAGGAAGCCAG+GGG | 0.664886 | 1.4:-36926940 | MS.gene068139:CDS |
ACTTGGTGGAACTCTTACTG+TGG | 0.667152 | 1.4:-36927399 | MS.gene068139:CDS |
CATGGTTGGGAAAACACCAA+AGG | 0.678908 | 1.4:-36928424 | MS.gene068139:CDS |
ATTGGTTGTGACTCAGAACA+AGG | 0.680575 | 1.4:-36926745 | MS.gene068139:CDS |
TAATAACAACAACAAGAGGG+AGG | 0.686207 | 1.4:+36927660 | None:intergenic |
CATATACAAGAAGTTCAGAG+AGG | 0.708025 | 1.4:-36926790 | MS.gene068139:CDS |
ATTGTTAAGACAACCCAAGG+AGG | 0.744267 | 1.4:+36928187 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAATTATAAAAAGCTT+TGG | + | chr1.4:36927368-36927387 | None:intergenic | 15.0% |
!! | CATAAGTAAAATTAAAGATT+TGG | + | chr1.4:36927266-36927285 | None:intergenic | 15.0% |
!!! | CAAATCTTTAATTTTACTTA+TGG | - | chr1.4:36927264-36927283 | MS.gene068139:intron | 15.0% |
!! | TAGAAATAATGAAACTGAAT+TGG | - | chr1.4:36928401-36928420 | MS.gene068139:CDS | 20.0% |
!! | TATGTAGCATCAATTATTAT+TGG | - | chr1.4:36928018-36928037 | MS.gene068139:CDS | 20.0% |
! | AAATGGCTTGAAATATTGTA+TGG | + | chr1.4:36927702-36927721 | None:intergenic | 25.0% |
! | ATGTGCTTATACATATTCAT+TGG | - | chr1.4:36927082-36927101 | MS.gene068139:CDS | 25.0% |
! | GATATGATTGAAAATAGTAC+TGG | + | chr1.4:36928066-36928085 | None:intergenic | 25.0% |
! | GTAAATAACTTGAGTCAAAT+TGG | - | chr1.4:36927787-36927806 | MS.gene068139:CDS | 25.0% |
!! | AAAGAATATTTTTCTCCAAG+AGG | + | chr1.4:36927659-36927678 | None:intergenic | 25.0% |
!! | AAGAGAAATCAAATCAGTTT+TGG | - | chr1.4:36926862-36926881 | MS.gene068139:CDS | 25.0% |
!! | AGAGAAATCAAATCAGTTTT+GGG | - | chr1.4:36926863-36926882 | MS.gene068139:CDS | 25.0% |
!! | TTGTTATTATGGAAGAACAA+AGG | - | chr1.4:36927518-36927537 | MS.gene068139:CDS | 25.0% |
!!! | ATCCTTATATTGTCTTGTTT+AGG | - | chr1.4:36927958-36927977 | MS.gene068139:CDS | 25.0% |
!!! | ATTATTATTGGTTTCTGCTT+TGG | - | chr1.4:36928030-36928049 | MS.gene068139:CDS | 25.0% |
!!! | CTTTAATTTTACTTATGGCT+TGG | - | chr1.4:36927269-36927288 | MS.gene068139:intron | 25.0% |
!!! | TAAAAAGCTTTGGAATCATT+TGG | + | chr1.4:36927358-36927377 | None:intergenic | 25.0% |
!!! | TGATTCTGATTTTGATTTTG+AGG | + | chr1.4:36927625-36927644 | None:intergenic | 25.0% |
!!! | TTTTTGGCTATTTCATGATT+TGG | - | chr1.4:36927017-36927036 | MS.gene068139:CDS | 25.0% |
AAAACAAAAGTTACAGCAGT+TGG | + | chr1.4:36927298-36927317 | None:intergenic | 30.0% | |
ACTCAACATTGTACAATGTT+GGG | - | chr1.4:36928109-36928128 | MS.gene068139:CDS | 30.0% | |
AGTCAAATTGGACTATCTTT+AGG | - | chr1.4:36927799-36927818 | MS.gene068139:CDS | 30.0% | |
ATAGATCCAAATTGCCATTA+GGG | + | chr1.4:36927857-36927876 | None:intergenic | 30.0% | |
ATCTAGGTAAAGTTACACAA+GGG | - | chr1.4:36927875-36927894 | MS.gene068139:CDS | 30.0% | |
ATGCTACATAAAGACCATTT+GGG | + | chr1.4:36928008-36928027 | None:intergenic | 30.0% | |
ATTGCATTTAATGTCCCAAA+TGG | - | chr1.4:36927991-36928010 | MS.gene068139:CDS | 30.0% | |
CCATAATAACAACAACAAGA+GGG | + | chr1.4:36927510-36927529 | None:intergenic | 30.0% | |
GACCTAAACAAGACAATATA+AGG | + | chr1.4:36927963-36927982 | None:intergenic | 30.0% | |
GGACATTAAATGCAATTAGA+AGG | + | chr1.4:36927987-36928006 | None:intergenic | 30.0% | |
TAACAAAGTTAAAACTCCCA+AGG | - | chr1.4:36927917-36927936 | MS.gene068139:CDS | 30.0% | |
TACTCAACATTGTACAATGT+TGG | - | chr1.4:36928108-36928127 | MS.gene068139:CDS | 30.0% | |
TATAAGCACATATTCCATAC+TGG | + | chr1.4:36927073-36927092 | None:intergenic | 30.0% | |
TATCTAGGTAAAGTTACACA+AGG | - | chr1.4:36927874-36927893 | MS.gene068139:CDS | 30.0% | |
TCAATCATATCTGAACTCTT+TGG | - | chr1.4:36928075-36928094 | MS.gene068139:CDS | 30.0% | |
TCCATAATAACAACAACAAG+AGG | + | chr1.4:36927511-36927530 | None:intergenic | 30.0% | |
TTATGGAAGAACAAAGGATT+TGG | - | chr1.4:36927524-36927543 | MS.gene068139:CDS | 30.0% | |
TTTATGATCATGTCAGTATC+TGG | - | chr1.4:36926812-36926831 | MS.gene068139:CDS | 30.0% | |
!! | AGGACTAGAGAGTTTTATAA+AGG | - | chr1.4:36928348-36928367 | MS.gene068139:CDS | 30.0% |
!! | GTATTTTCAGGAAAGAAACA+TGG | - | chr1.4:36926722-36926741 | MS.gene068139:CDS | 30.0% |
AACCAAGATAACCACTCAAA+AGG | + | chr1.4:36927192-36927211 | None:intergenic | 35.0% | |
AATGTGGTTATACTATGTGC+AGG | + | chr1.4:36927829-36927848 | None:intergenic | 35.0% | |
ACATGTCTTTAATCCTTGCA+GGG | - | chr1.4:36927389-36927408 | MS.gene068139:CDS | 35.0% | |
ACTAGTGTAAAGAATTTCCC+TGG | - | chr1.4:36927145-36927164 | MS.gene068139:CDS | 35.0% | |
ATATTCCATACTGGAGGTTT+AGG | + | chr1.4:36927064-36927083 | None:intergenic | 35.0% | |
ATCAAAAGCAAGTTTCCTCT+TGG | - | chr1.4:36927641-36927660 | MS.gene068139:CDS | 35.0% | |
ATGGCAATTTGGATCTATCT+AGG | - | chr1.4:36927859-36927878 | MS.gene068139:CDS | 35.0% | |
CAAAAAGAGTCATCATGTCA+AGG | + | chr1.4:36927729-36927748 | None:intergenic | 35.0% | |
CAACTATACTATGCCTTCTA+TGG | - | chr1.4:36927232-36927251 | MS.gene068139:intron | 35.0% | |
CATATACAAGAAGTTCAGAG+AGG | - | chr1.4:36928374-36928393 | MS.gene068139:CDS | 35.0% | |
CTCTTATGGTGCTTAATAAC+TGG | + | chr1.4:36927325-36927344 | None:intergenic | 35.0% | |
CTTAACAAGTATGACCCTAT+TGG | + | chr1.4:36928147-36928166 | None:intergenic | 35.0% | |
GATAGATCCAAATTGCCATT+AGG | + | chr1.4:36927858-36927877 | None:intergenic | 35.0% | |
GATGCTACATAAAGACCATT+TGG | + | chr1.4:36928009-36928028 | None:intergenic | 35.0% | |
GCACTATGATCATTATCATG+AGG | + | chr1.4:36927417-36927436 | None:intergenic | 35.0% | |
TAATAACAACAACAAGAGGG+AGG | + | chr1.4:36927507-36927526 | None:intergenic | 35.0% | |
TACATGTCTTTAATCCTTGC+AGG | - | chr1.4:36927388-36927407 | MS.gene068139:CDS | 35.0% | |
TATTCCATACTGGAGGTTTA+GGG | + | chr1.4:36927063-36927082 | None:intergenic | 35.0% | |
TCTAGGTAAAGTTACACAAG+GGG | - | chr1.4:36927876-36927895 | MS.gene068139:CDS | 35.0% | |
TGGAAGTCAATGCTACAAAT+TGG | - | chr1.4:36928263-36928282 | MS.gene068139:CDS | 35.0% | |
TTCAGGAAAGAAACATGGTT+GGG | - | chr1.4:36926727-36926746 | MS.gene068139:CDS | 35.0% | |
TTTCAGGAAAGAAACATGGT+TGG | - | chr1.4:36926726-36926745 | MS.gene068139:CDS | 35.0% | |
! | CTTTTTGTAGCCACAATATG+TGG | - | chr1.4:36927742-36927761 | MS.gene068139:CDS | 35.0% |
! | GTCATACTTGTTAAGTGTGA+GGG | - | chr1.4:36928152-36928171 | MS.gene068139:CDS | 35.0% |
! | TTTGGAGTCATTTCCATAGA+AGG | + | chr1.4:36927248-36927267 | None:intergenic | 35.0% |
!! | CCCTCTTGTTGTTGTTATTA+TGG | - | chr1.4:36927507-36927526 | MS.gene068139:CDS | 35.0% |
!! | TGTCTCTAACTTTGGTGTTA+AGG | - | chr1.4:36928328-36928347 | MS.gene068139:CDS | 35.0% |
AAATCCCTAAACCTCCAGTA+TGG | - | chr1.4:36927056-36927075 | MS.gene068139:CDS | 40.0% | |
AACCACATTTGTGTCCCTAA+TGG | - | chr1.4:36927840-36927859 | MS.gene068139:CDS | 40.0% | |
AAGAATTTCCCTGGTAGTAG+AGG | - | chr1.4:36927154-36927173 | MS.gene068139:CDS | 40.0% | |
AAGCACATATTCCATACTGG+AGG | + | chr1.4:36927070-36927089 | None:intergenic | 40.0% | |
AAGGACTTGGGATCTAACAT+AGG | - | chr1.4:36926923-36926942 | MS.gene068139:CDS | 40.0% | |
ATATTCTTTCCCCCAAGTAG+AGG | - | chr1.4:36927670-36927689 | MS.gene068139:CDS | 40.0% | |
ATCTTCCTGTTAGGACTTGA+AGG | + | chr1.4:36926772-36926791 | None:intergenic | 40.0% | |
ATTGGTTGTGACTCAGAACA+AGG | - | chr1.4:36928419-36928438 | MS.gene068139:CDS | 40.0% | |
ATTGTTAAGACAACCCAAGG+AGG | + | chr1.4:36926980-36926999 | None:intergenic | 40.0% | |
CAATGAAATCACACCTCCTT+GGG | - | chr1.4:36926964-36926983 | MS.gene068139:CDS | 40.0% | |
CATCATGTCAAGGCTGAAAA+TGG | + | chr1.4:36927719-36927738 | None:intergenic | 40.0% | |
CCAATTGTTAAGACAACCCA+AGG | + | chr1.4:36926983-36927002 | None:intergenic | 40.0% | |
CCATAAACCATCTTCCTGTT+AGG | + | chr1.4:36926781-36926800 | None:intergenic | 40.0% | |
CCTAACAGGAAGATGGTTTA+TGG | - | chr1.4:36926778-36926797 | MS.gene068139:CDS | 40.0% | |
GGTCAATAGCAAGTCCAATA+GGG | - | chr1.4:36928130-36928149 | MS.gene068139:CDS | 40.0% | |
TAAGGCAAATGGCAGCATTA+GGG | - | chr1.4:36928205-36928224 | MS.gene068139:CDS | 40.0% | |
TCAATGAAATCACACCTCCT+TGG | - | chr1.4:36926963-36926982 | MS.gene068139:CDS | 40.0% | |
TCTAACATAGGCATTCTCTC+AGG | - | chr1.4:36926935-36926954 | MS.gene068139:CDS | 40.0% | |
TCTATGACAAAGAAGCCCTA+AGG | - | chr1.4:36928187-36928206 | MS.gene068139:CDS | 40.0% | |
TCTCATTGTTCAACCAACAC+TGG | - | chr1.4:36927112-36927131 | MS.gene068139:CDS | 40.0% | |
TCTTCCTGTTAGGACTTGAA+GGG | + | chr1.4:36926771-36926790 | None:intergenic | 40.0% | |
TGGGTTGTCTTAACAATTGG+TGG | - | chr1.4:36926983-36927002 | MS.gene068139:CDS | 40.0% | |
TTCAAGTCCTAACAGGAAGA+TGG | - | chr1.4:36926771-36926790 | MS.gene068139:CDS | 40.0% | |
TTGAGCTTCTTCAAGGACTT+GGG | - | chr1.4:36926911-36926930 | MS.gene068139:CDS | 40.0% | |
TTGGTTGTTCAGCTCTCTTA+TGG | + | chr1.4:36927339-36927358 | None:intergenic | 40.0% | |
TTGTGTCCCTAATGGCAATT+TGG | - | chr1.4:36927848-36927867 | MS.gene068139:CDS | 40.0% | |
! | AGTGGTTATCTTGGTTTGAG+TGG | - | chr1.4:36927196-36927215 | MS.gene068139:intron | 40.0% |
! | CCTTGGGTTGTCTTAACAAT+TGG | - | chr1.4:36926980-36926999 | MS.gene068139:CDS | 40.0% |
! | GGTCATACTTGTTAAGTGTG+AGG | - | chr1.4:36928151-36928170 | MS.gene068139:CDS | 40.0% |
! | GTTTCTGCTTTGGTGCAAAT+TGG | - | chr1.4:36928040-36928059 | MS.gene068139:CDS | 40.0% |
! | TAATGCTGCCATTTGCCTTA+GGG | + | chr1.4:36928205-36928224 | None:intergenic | 40.0% |
!! | GAGCAAGAGAAGCATCAAAA+TGG | + | chr1.4:36927482-36927501 | None:intergenic | 40.0% |
!!! | GGTGGTCTTCTCAACTTTTT+TGG | - | chr1.4:36927001-36927020 | MS.gene068139:CDS | 40.0% |
AGGATTGATGTGAGCATGAG+AGG | + | chr1.4:36927943-36927962 | None:intergenic | 45.0% | |
AGTGACTAAAGCTCCAGTGT+TGG | + | chr1.4:36927128-36927147 | None:intergenic | 45.0% | |
ATGACAACACCTCTACTACC+AGG | + | chr1.4:36927166-36927185 | None:intergenic | 45.0% | |
CAAAGAAGCCCTAAGGCAAA+TGG | - | chr1.4:36928194-36928213 | MS.gene068139:CDS | 45.0% | |
CACTCTCTTGAGCTTCTTCA+AGG | - | chr1.4:36926904-36926923 | MS.gene068139:CDS | 45.0% | |
CATGGTTGGGAAAACACCAA+AGG | - | chr1.4:36926740-36926759 | MS.gene068139:CDS | 45.0% | |
CTAAGGCAAATGGCAGCATT+AGG | - | chr1.4:36928204-36928223 | MS.gene068139:CDS | 45.0% | |
CTTGAGCTTCTTCAAGGACT+TGG | - | chr1.4:36926910-36926929 | MS.gene068139:CDS | 45.0% | |
GAGGTGTGATTTCATTGAGC+AGG | + | chr1.4:36926961-36926980 | None:intergenic | 45.0% | |
GGCACTTGTGTCTCTAACTT+TGG | - | chr1.4:36928320-36928339 | MS.gene068139:CDS | 45.0% | |
GGGTCAATAGCAAGTCCAAT+AGG | - | chr1.4:36928129-36928148 | MS.gene068139:CDS | 45.0% | |
GTAGCCACAATATGTGGACT+TGG | - | chr1.4:36927748-36927767 | MS.gene068139:CDS | 45.0% | |
GTTGTGACTCAGAACAAGGT+TGG | - | chr1.4:36928423-36928442 | MS.gene068139:CDS | 45.0% | |
TAGGGTTAAAGAGGAAGCCA+GGG | - | chr1.4:36928223-36928242 | MS.gene068139:CDS | 45.0% | |
TATGGTCTTCGCCTCTACTT+GGG | + | chr1.4:36927684-36927703 | None:intergenic | 45.0% | |
TCAAGAGAGTGAGAGTGGAT+TGG | + | chr1.4:36926895-36926914 | None:intergenic | 45.0% | |
TCCACCAAGTCCACATATTG+TGG | + | chr1.4:36927755-36927774 | None:intergenic | 45.0% | |
TGACAACACCTCTACTACCA+GGG | + | chr1.4:36927165-36927184 | None:intergenic | 45.0% | |
TGCCATTAGGGACACAAATG+TGG | + | chr1.4:36927845-36927864 | None:intergenic | 45.0% | |
TGGCAGCATTAGGGTTAAAG+AGG | - | chr1.4:36928214-36928233 | MS.gene068139:CDS | 45.0% | |
TTAGGGTTAAAGAGGAAGCC+AGG | - | chr1.4:36928222-36928241 | MS.gene068139:CDS | 45.0% | |
TTATCATGAGGAACCCTGCA+AGG | + | chr1.4:36927405-36927424 | None:intergenic | 45.0% | |
TTCACCCTTCAAGTCCTAAC+AGG | - | chr1.4:36926764-36926783 | MS.gene068139:CDS | 45.0% | |
TTGTTAAGTGTGAGGGTTGC+TGG | - | chr1.4:36928159-36928178 | MS.gene068139:CDS | 45.0% | |
! | ACTTGGTGGAACTCTTACTG+TGG | - | chr1.4:36927765-36927784 | MS.gene068139:CDS | 45.0% |
! | ATCACTGCTGTTAGCCTCTT+AGG | - | chr1.4:36928297-36928316 | MS.gene068139:CDS | 45.0% |
! | CTAATGCTGCCATTTGCCTT+AGG | + | chr1.4:36928206-36928225 | None:intergenic | 45.0% |
! | GTTGTCATAGGCCTTTTGAG+TGG | - | chr1.4:36927178-36927197 | MS.gene068139:CDS | 45.0% |
! | TCACTGCTGTTAGCCTCTTA+GGG | - | chr1.4:36928298-36928317 | MS.gene068139:CDS | 45.0% |
! | TCTGGAGCAAGCTACATGTT+TGG | - | chr1.4:36926830-36926849 | MS.gene068139:CDS | 45.0% |
!! | GGCCTTTTGAGTGGTTATCT+TGG | - | chr1.4:36927187-36927206 | MS.gene068139:CDS | 45.0% |
!! | GGTAGTAGAGGTGTTGTCAT+AGG | - | chr1.4:36927166-36927185 | MS.gene068139:CDS | 45.0% |
AGGGTTAAAGAGGAAGCCAG+GGG | - | chr1.4:36928224-36928243 | MS.gene068139:CDS | 50.0% | |
ATGGTCTTCGCCTCTACTTG+GGG | + | chr1.4:36927683-36927702 | None:intergenic | 50.0% | |
ATGTGAGCATGAGAGGCCTT+GGG | + | chr1.4:36927936-36927955 | None:intergenic | 50.0% | |
CCACAGACTCACCAATCTAC+AGG | - | chr1.4:36927592-36927611 | MS.gene068139:CDS | 50.0% | |
CCTGTAGATTGGTGAGTCTG+TGG | + | chr1.4:36927595-36927614 | None:intergenic | 50.0% | |
GAAGCTCAAGAGAGTGAGAG+TGG | + | chr1.4:36926900-36926919 | None:intergenic | 50.0% | |
GACTTGAAGGGTGAAGCCTT+TGG | + | chr1.4:36926759-36926778 | None:intergenic | 50.0% | |
GAGGAGTCTCTCCTGTAGAT+TGG | + | chr1.4:36927606-36927625 | None:intergenic | 50.0% | |
GATTGGTGAGTCTGTGGCTT+AGG | + | chr1.4:36927589-36927608 | None:intergenic | 50.0% | |
GCCACAATATGTGGACTTGG+TGG | - | chr1.4:36927751-36927770 | MS.gene068139:CDS | 50.0% | |
GGGGAGGAGTTGAATTGCAA+TGG | - | chr1.4:36928243-36928262 | MS.gene068139:CDS | 50.0% | |
GTATGGTCTTCGCCTCTACT+TGG | + | chr1.4:36927685-36927704 | None:intergenic | 50.0% | |
TTGCAATTCAACTCCTCCCC+TGG | + | chr1.4:36928243-36928262 | None:intergenic | 50.0% | |
! | CACTGCTGTTAGCCTCTTAG+GGG | - | chr1.4:36928299-36928318 | MS.gene068139:CDS | 50.0% |
GAGACACAAGTGCCCCTAAG+AGG | + | chr1.4:36928314-36928333 | None:intergenic | 55.0% | |
GATGTGAGCATGAGAGGCCT+TGG | + | chr1.4:36927937-36927956 | None:intergenic | 55.0% | |
GTTAAAGAGGAAGCCAGGGG+AGG | - | chr1.4:36928227-36928246 | MS.gene068139:CDS | 55.0% | |
TGAGTCTGTGGCTTAGGAGG+AGG | + | chr1.4:36927583-36927602 | None:intergenic | 55.0% | |
TGGTCTTCGCCTCTACTTGG+GGG | + | chr1.4:36927682-36927701 | None:intergenic | 55.0% | |
TGGTGAGTCTGTGGCTTAGG+AGG | + | chr1.4:36927586-36927605 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 36926719 | 36928467 | 36926719 | ID=MS.gene068139 |
chr1.4 | mRNA | 36926719 | 36928467 | 36926719 | ID=MS.gene068139.t1;Parent=MS.gene068139 |
chr1.4 | exon | 36927306 | 36928467 | 36927306 | ID=MS.gene068139.t1.exon1;Parent=MS.gene068139.t1 |
chr1.4 | CDS | 36927306 | 36928467 | 36927306 | ID=cds.MS.gene068139.t1;Parent=MS.gene068139.t1 |
chr1.4 | exon | 36926719 | 36927206 | 36926719 | ID=MS.gene068139.t1.exon2;Parent=MS.gene068139.t1 |
chr1.4 | CDS | 36926719 | 36927206 | 36926719 | ID=cds.MS.gene068139.t1;Parent=MS.gene068139.t1 |
Gene Sequence |
Protein sequence |