AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055116


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055116.t1 MTR_7g066120 99.270 411 3 0 1 411 1 411 0.0 837
MS.gene055116.t1 MTR_2g008030 50.877 342 150 2 71 411 11 335 1.39e-116 343
MS.gene055116.t1 MTR_6g035305 50.000 342 153 2 71 411 11 335 4.00e-114 337
MS.gene055116.t1 MTR_4g093620 44.970 338 163 7 73 409 70 385 2.06e-93 286
MS.gene055116.t1 MTR_0776s0010 35.493 355 207 6 56 404 273 611 1.89e-71 244
MS.gene055116.t1 MTR_3g070100 28.720 289 171 9 125 410 115 371 9.49e-20 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055116.t1 AT3G54050 82.532 395 61 3 21 411 27 417 0.0 659
MS.gene055116.t1 AT3G54050 82.532 395 61 3 21 411 27 417 0.0 659
MS.gene055116.t1 AT1G43670 49.415 342 155 3 71 411 11 335 1.33e-112 333
MS.gene055116.t1 AT5G64380 47.059 323 147 7 91 409 89 391 6.42e-90 278
MS.gene055116.t1 AT3G55800 29.341 334 179 15 89 410 90 378 1.91e-21 95.9

Find 89 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTATATGGTGGCATTTA+TGG 0.101447 7.4:-38721861 MS.gene055116:CDS
CCAATATACCTTGCTGAATA+AGG 0.237180 7.4:+38721912 None:intergenic
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7.4:-38723489 MS.gene055116:CDS
GCTAATATTTCTAACCTTAC+TGG 0.275094 7.4:-38723458 MS.gene055116:CDS
CCTTATTCAGCAAGGTATAT+TGG 0.303464 7.4:-38721912 MS.gene055116:CDS
GCAGTAGAAGAGAGTTATTC+AGG 0.314426 7.4:-38722897 MS.gene055116:CDS
GTGGTCTTTGATCCACTTGA+TGG 0.340444 7.4:-38722864 MS.gene055116:CDS
GGACACTGCAGCATCGATAT+TGG 0.345508 7.4:+38722836 None:intergenic
AGCTTATAACATTGACTAGT+TGG 0.352602 7.4:-38723583 MS.gene055116:CDS
AGCAAGGTATATTGGTAGTT+TGG 0.355656 7.4:-38721904 MS.gene055116:CDS
GCTGCTAGAAGGTTGCTTCC+TGG 0.357718 7.4:+38722164 None:intergenic
CATAGACGTGAAGGAGAATA+AGG 0.361630 7.4:+38723743 None:intergenic
AATGAGTTTCATTGTAGAAC+AGG 0.377561 7.4:-38721778 MS.gene055116:CDS
AATCTCCAAATACCGAAATC+AGG 0.381783 7.4:-38722032 MS.gene055116:CDS
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7.4:-38723449 MS.gene055116:CDS
CTCAAGGAACCAGGTTCTAA+TGG 0.388835 7.4:-38721939 MS.gene055116:CDS
AGAAAGCATGTGAGTGGCTC+TGG 0.395778 7.4:-38723668 MS.gene055116:CDS
TTCCATAGGACACTGCTATA+TGG 0.397832 7.4:-38721873 MS.gene055116:CDS
AAAATATATTCTTTCAATGA+AGG 0.413500 7.4:-38722008 MS.gene055116:CDS
GTAATCTTTGTTCTAACAAT+CGG 0.423108 7.4:-38722116 MS.gene055116:CDS
TCAGCAAGACACTCATCATT+GGG 0.424990 7.4:+38722786 None:intergenic
TTGTTGAAGCAAGAACAAAC+AGG 0.433134 7.4:-38723560 MS.gene055116:CDS
GTCAGCAAGACACTCATCAT+TGG 0.434675 7.4:+38722785 None:intergenic
CAAGGTGCTGTAAATATTCA+AGG 0.437548 7.4:-38723431 MS.gene055116:CDS
GTAGAACAGGCTGGTGGAAA+AGG 0.450058 7.4:-38721765 MS.gene055116:CDS
TGCAGTAACCAGCTGCTAGA+AGG 0.454204 7.4:+38722153 None:intergenic
TTCACATTAGATCCAATGTA+TGG 0.463537 7.4:-38722077 MS.gene055116:CDS
CATTGGGAGCACAGAGGAAG+TGG 0.471616 7.4:-38721112 MS.gene055116:CDS
AGGTATTCTCAAATTGTTTG+AGG 0.481726 7.4:-38722971 MS.gene055116:CDS
AACGTGTTCCACTGTACATT+GGG 0.482493 7.4:-38721128 MS.gene055116:CDS
ATGAAGGGAATTACAAGTTG+TGG 0.487692 7.4:-38721992 MS.gene055116:CDS
TGTTCTACAATGAAACTCAT+TGG 0.490655 7.4:+38721780 None:intergenic
TTTGTTCTAACAATCGGTAA+AGG 0.499257 7.4:-38722110 MS.gene055116:CDS
TTGAGGTCAAGTGGTAGGAC+AGG 0.499422 7.4:-38722954 MS.gene055116:CDS
AGGTATATTGGTAGTTTGGT+AGG 0.501227 7.4:-38721900 MS.gene055116:CDS
TGAAGGGAATTACAAGTTGT+GGG 0.501292 7.4:-38721991 MS.gene055116:CDS
GTTTGGTAGGTGATTTCCAT+AGG 0.501579 7.4:-38721887 MS.gene055116:CDS
CTAGAAGGTTGCTTCCTGGT+TGG 0.502181 7.4:+38722168 None:intergenic
GTGGCATTTATGGTTACCCT+AGG 0.502343 7.4:-38721851 MS.gene055116:CDS
GATAATAGCATCAGAGGAAG+AGG 0.504250 7.4:-38722931 MS.gene055116:CDS
AAAGTAAGAATGGAAAGCTT+AGG 0.504829 7.4:-38721821 MS.gene055116:CDS
CAGCACCTTGAACACCAGTA+AGG 0.507446 7.4:+38723444 None:intergenic
AAAACAAATTCTCCATACAT+TGG 0.510690 7.4:+38722065 None:intergenic
AGGGACAAGAAAAGTAAGAA+TGG 0.516753 7.4:-38721831 MS.gene055116:CDS
AAATATATTCTTTCAATGAA+GGG 0.518944 7.4:-38722007 MS.gene055116:CDS
CACCATATAGCAGTGTCCTA+TGG 0.526436 7.4:+38721871 None:intergenic
GACAGGGATAATAGCATCAG+AGG 0.533932 7.4:-38722937 MS.gene055116:CDS
ATCGATGCTGCAGTGTCCAC+CGG 0.534943 7.4:-38722831 MS.gene055116:CDS
GGAAGCAACCTTCTAGCAGC+TGG 0.536054 7.4:-38722161 MS.gene055116:CDS
CAACGTGTTCCACTGTACAT+TGG 0.541762 7.4:-38721129 MS.gene055116:CDS
ATTGTAAATGTATGCCAACC+AGG 0.543985 7.4:-38722182 MS.gene055116:CDS
TAACTCTCTTCTACTGCCAC+TGG 0.546360 7.4:+38722903 None:intergenic
TAAGGTTTGCCATTAGAACC+TGG 0.547362 7.4:+38721930 None:intergenic
ATCTCCAAATACCGAAATCA+GGG 0.551752 7.4:-38722031 MS.gene055116:CDS
ATTGTTTGAGGTCAAGTGGT+AGG 0.555836 7.4:-38722959 MS.gene055116:CDS
ACTTGATGTTGTCTCAAATG+AGG 0.561343 7.4:-38723393 MS.gene055116:intron
GTCGAAGACACAAAGTTGGA+AGG 0.567894 7.4:+38723718 None:intergenic
AGTTTCATTGTAGAACAGGC+TGG 0.569307 7.4:-38721774 MS.gene055116:CDS
GCTGGTGGAAAAGGTTCAGA+TGG 0.579726 7.4:-38721756 MS.gene055116:CDS
CATTCGACACTTACTTCGGT+GGG 0.582856 7.4:+38721708 None:intergenic
TCATTCGACACTTACTTCGG+TGG 0.583933 7.4:+38721707 None:intergenic
ATCGATGATCTCAAGGAACC+AGG 0.584338 7.4:-38721948 MS.gene055116:CDS
TGCTGTAAATATTCAAGGGG+AGG 0.587683 7.4:-38723426 MS.gene055116:CDS
TCAAATTGTTTGAGGTCAAG+TGG 0.589352 7.4:-38722963 MS.gene055116:CDS
GAAATACATCGATGATCTCA+AGG 0.591810 7.4:-38721955 MS.gene055116:CDS
CTCTGGAGGAGTGAGATGCA+TGG 0.594547 7.4:-38723651 MS.gene055116:CDS
AAGCATGTGAGTGGCTCTGG+AGG 0.594581 7.4:-38723665 MS.gene055116:CDS
AAGGTGCTGTAAATATTCAA+GGG 0.595137 7.4:-38723430 MS.gene055116:CDS
TCGTGTCGAAGACACAAAGT+TGG 0.599445 7.4:+38723714 None:intergenic
TTCATTGTAGAACAGGCTGG+TGG 0.611027 7.4:-38721771 MS.gene055116:CDS
TGTTGAAGCAAGAACAAACA+GGG 0.616718 7.4:-38723559 MS.gene055116:CDS
AGAGGAAGAGGATGTACCAG+TGG 0.619272 7.4:-38722919 MS.gene055116:CDS
TGGAAGGGACATAGACGTGA+AGG 0.619746 7.4:+38723734 None:intergenic
GGCTGTTGGTGAAGTAGCTG+CGG 0.625568 7.4:-38723630 MS.gene055116:CDS
TCGAAGACACAAAGTTGGAA+GGG 0.631419 7.4:+38723719 None:intergenic
TGGCATTTATGGTTACCCTA+GGG 0.632312 7.4:-38721850 MS.gene055116:CDS
ATGGCAAACCTTATTCAGCA+AGG 0.633183 7.4:-38721920 MS.gene055116:CDS
TCAAGAAGAAAGCATGTGAG+TGG 0.640509 7.4:-38723674 MS.gene055116:CDS
ATATTGGATGAACCATCAAG+TGG 0.643892 7.4:+38722852 None:intergenic
TGAGGTCAAGTGGTAGGACA+GGG 0.650571 7.4:-38722953 MS.gene055116:CDS
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7.4:-38723644 MS.gene055116:CDS
TCTGTGCTCCCAATGTACAG+TGG 0.654161 7.4:+38721120 None:intergenic
CATAGGACACTGCTATATGG+TGG 0.655058 7.4:-38721870 MS.gene055116:CDS
AGGTGCTGTAAATATTCAAG+GGG 0.670231 7.4:-38723429 MS.gene055116:CDS
CAGCAAGACACTCATCATTG+GGG 0.711192 7.4:+38722787 None:intergenic
TTATTCAGGAAACTACATTG+TGG 0.717533 7.4:-38722883 MS.gene055116:CDS
GTTGAAGCAAGAACAAACAG+GGG 0.727918 7.4:-38723558 MS.gene055116:CDS
GATGAGTGTCTTGCTGACGT+AGG 0.753812 7.4:-38722780 MS.gene055116:CDS
ACTGTACATTGGGAGCACAG+AGG 0.776186 7.4:-38721118 MS.gene055116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATAGTTTATGATAAA+TGG - chr7.4:38723679-38723698 MS.gene055116:CDS 10.0%
!!! AAACTATTATATTTTTATCA+TGG + chr7.4:38723671-38723690 None:intergenic 10.0%
!!! TTAAACAATGTTTTAAAAAT+CGG + chr7.4:38722631-38722650 None:intergenic 10.0%
!! AAAATATATTCTTTCAATGA+AGG - chr7.4:38722872-38722891 MS.gene055116:CDS 15.0%
!! AAATATATTCTTTCAATGAA+GGG - chr7.4:38722873-38722892 MS.gene055116:CDS 15.0%
!!! ATTTAATTTTCCCTTTTTTT+TGG - chr7.4:38723718-38723737 MS.gene055116:CDS 15.0%
!! AATAATACAAAGAGTAAGAA+CGG + chr7.4:38722506-38722525 None:intergenic 20.0%
!! AATATCAATTATTTCAACCT+CGG + chr7.4:38721621-38721640 None:intergenic 20.0%
!! AATTGAAGCATATTTAACAA+GGG + chr7.4:38721762-38721781 None:intergenic 20.0%
!! ATTCAAAATGATTGTAATTG+AGG + chr7.4:38721677-38721696 None:intergenic 20.0%
!! TTAAGTAGTTTATCTAAACA+AGG + chr7.4:38723205-38723224 None:intergenic 20.0%
!!! ATACCTTAATTTGATTAAAC+AGG - chr7.4:38722462-38722481 MS.gene055116:intron 20.0%
!!! ATGATTTTGCAATTTGAATT+TGG + chr7.4:38721807-38721826 None:intergenic 20.0%
!!! ATTTAGTTAGTTTTGAACTA+GGG - chr7.4:38721525-38721544 MS.gene055116:intron 20.0%
!!! GATTGTTTTCATTTATGATT+AGG - chr7.4:38722166-38722185 MS.gene055116:CDS 20.0%
!!! TACCTTAATTTGATTAAACA+GGG - chr7.4:38722463-38722482 MS.gene055116:intron 20.0%
!!! TATTTAGTTAGTTTTGAACT+AGG - chr7.4:38721524-38721543 MS.gene055116:intron 20.0%
!!! TTGTTTTCTATTTTTTGTTC+AGG - chr7.4:38721889-38721908 MS.gene055116:CDS 20.0%
! AAAACAAATTCTCCATACAT+TGG + chr7.4:38722818-38722837 None:intergenic 25.0%
! ATAATACAAAGAGTAAGAAC+GGG + chr7.4:38722505-38722524 None:intergenic 25.0%
! ATGAATCTGTCCAAAAAAAA+GGG + chr7.4:38723731-38723750 None:intergenic 25.0%
! GAATTGAAGCATATTTAACA+AGG + chr7.4:38721763-38721782 None:intergenic 25.0%
! GTAATCTTTGTTCTAACAAT+CGG - chr7.4:38722764-38722783 MS.gene055116:CDS 25.0%
! GTTTATGATAAATGGTATGA+TGG - chr7.4:38723687-38723706 MS.gene055116:CDS 25.0%
! TAAGTACTTAAAAGACTGTT+TGG + chr7.4:38723418-38723437 None:intergenic 25.0%
! TAATTAAGCGCTTATAGTTT+AGG - chr7.4:38723222-38723241 MS.gene055116:intron 25.0%
! TACATATATAAATTGCAGCT+TGG - chr7.4:38722656-38722675 MS.gene055116:intron 25.0%
! TGCAAAATCATTTATGCTAA+AGG - chr7.4:38721816-38721835 MS.gene055116:CDS 25.0%
!! ACCTTAATTTGATTAAACAG+GGG - chr7.4:38722464-38722483 MS.gene055116:intron 25.0%
!! GAATATATTTTCCCTGATTT+CGG + chr7.4:38722863-38722882 None:intergenic 25.0%
!!! AAGTAATTTTGGAGAGTTTA+GGG - chr7.4:38723339-38723358 MS.gene055116:intron 25.0%
!!! AATCAAATTAAGGTATCGTT+GGG + chr7.4:38722458-38722477 None:intergenic 25.0%
!!! TAAGTAATTTTGGAGAGTTT+AGG - chr7.4:38723338-38723357 MS.gene055116:intron 25.0%
!!! TAATCAAATTAAGGTATCGT+TGG + chr7.4:38722459-38722478 None:intergenic 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG - chr7.4:38721367-38721386 MS.gene055116:intron 25.0%
AAAGTAAGAATGGAAAGCTT+AGG - chr7.4:38723059-38723078 MS.gene055116:intron 30.0%
AATGAACTGAAATGAGCTTA+TGG - chr7.4:38723363-38723382 MS.gene055116:intron 30.0%
AATGAGTTTCATTGTAGAAC+AGG - chr7.4:38723102-38723121 MS.gene055116:intron 30.0%
ACCCCTGTTTAATCAAATTA+AGG + chr7.4:38722468-38722487 None:intergenic 30.0%
AGGTATTCTCAAATTGTTTG+AGG - chr7.4:38721909-38721928 MS.gene055116:CDS 30.0%
ATAAGTGTGAATGAATCAAG+TGG - chr7.4:38722280-38722299 MS.gene055116:intron 30.0%
ATCATGGTTTAGTAGAAGAT+CGG + chr7.4:38723655-38723674 None:intergenic 30.0%
ATGTAAACAGATTGCTTCTT+TGG - chr7.4:38721391-38721410 MS.gene055116:intron 30.0%
ATGTAACAGTCCAAAAATTG+TGG - chr7.4:38723626-38723645 MS.gene055116:CDS 30.0%
GATGAATCTGTCCAAAAAAA+AGG + chr7.4:38723732-38723751 None:intergenic 30.0%
GTAAATTCCAAAAATGGAAC+CGG + chr7.4:38722071-38722090 None:intergenic 30.0%
TGAGACCAAAAAAAAAGTCA+TGG - chr7.4:38721595-38721614 MS.gene055116:intron 30.0%
TGTTCTACAATGAAACTCAT+TGG + chr7.4:38723103-38723122 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG - chr7.4:38722178-38722197 MS.gene055116:CDS 30.0%
TTATTCAGGAAACTACATTG+TGG - chr7.4:38721997-38722016 MS.gene055116:CDS 30.0%
TTCACATTAGATCCAATGTA+TGG - chr7.4:38722803-38722822 MS.gene055116:CDS 30.0%
TTTGTTCTAACAATCGGTAA+AGG - chr7.4:38722770-38722789 MS.gene055116:CDS 30.0%
! AGCTTATAACATTGACTAGT+TGG - chr7.4:38721297-38721316 MS.gene055116:intron 30.0%
! GCTAATATTTCTAACCTTAC+TGG - chr7.4:38721422-38721441 MS.gene055116:intron 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG - chr7.4:38721450-38721469 MS.gene055116:intron 30.0%
!! ATTTTTGGACTGTTACATCA+AGG + chr7.4:38723624-38723643 None:intergenic 30.0%
!! GCTAGTTTCGTAAGTAATTT+TGG - chr7.4:38723328-38723347 MS.gene055116:intron 30.0%
!!! CAATGTTTTAAAAATCGGAC+TGG + chr7.4:38722626-38722645 None:intergenic 30.0%
AAAAATCCGCAATCGTGATT+TGG + chr7.4:38721730-38721749 None:intergenic 35.0%
AACCATAGTTGAACTTGAAC+TGG + chr7.4:38722560-38722579 None:intergenic 35.0%
AACTAGTTGAACCAACCTTT+AGG + chr7.4:38722399-38722418 None:intergenic 35.0%
AAGTCATTCGACACTTACTT+CGG + chr7.4:38723179-38723198 None:intergenic 35.0%
AATCTCCAAATACCGAAATC+AGG - chr7.4:38722848-38722867 MS.gene055116:CDS 35.0%
ACTTGATGTTGTCTCAAATG+AGG - chr7.4:38721487-38721506 MS.gene055116:intron 35.0%
AGGGACAAGAAAAGTAAGAA+TGG - chr7.4:38723049-38723068 MS.gene055116:intron 35.0%
AGGTATTTGATGTCTTTCCT+AGG + chr7.4:38723604-38723623 None:intergenic 35.0%
ATATTGGATGAACCATCAAG+TGG + chr7.4:38722031-38722050 None:intergenic 35.0%
ATCTCCAAATACCGAAATCA+GGG - chr7.4:38722849-38722868 MS.gene055116:CDS 35.0%
ATGAAGGGAATTACAAGTTG+TGG - chr7.4:38722888-38722907 MS.gene055116:CDS 35.0%
ATTGTAAATGTATGCCAACC+AGG - chr7.4:38722698-38722717 MS.gene055116:intron 35.0%
CAACTTAGAAACCTAAAGGT+TGG - chr7.4:38722385-38722404 MS.gene055116:intron 35.0%
CAAGCAACTTAGAAACCTAA+AGG - chr7.4:38722381-38722400 MS.gene055116:intron 35.0%
CCAATATACCTTGCTGAATA+AGG + chr7.4:38722971-38722990 None:intergenic 35.0%
CCTTATTCAGCAAGGTATAT+TGG - chr7.4:38722968-38722987 MS.gene055116:CDS 35.0%
GAAATACATCGATGATCTCA+AGG - chr7.4:38722925-38722944 MS.gene055116:CDS 35.0%
GTAATCGTGACTTAAAACAG+TGG + chr7.4:38723500-38723519 None:intergenic 35.0%
TGAAGGGAATTACAAGTTGT+GGG - chr7.4:38722889-38722908 MS.gene055116:CDS 35.0%
TGTTGAAGCAAGAACAAACA+GGG - chr7.4:38721321-38721340 MS.gene055116:intron 35.0%
TTGTTGAAGCAAGAACAAAC+AGG - chr7.4:38721320-38721339 MS.gene055116:intron 35.0%
! AAAGGTTGGTTCAACTAGTT+GGG - chr7.4:38722399-38722418 MS.gene055116:intron 35.0%
! AGCAAGGTATATTGGTAGTT+TGG - chr7.4:38722976-38722995 MS.gene055116:intron 35.0%
! AGGTATATTGGTAGTTTGGT+AGG - chr7.4:38722980-38722999 MS.gene055116:intron 35.0%
! AGGTGCTGTAAATATTCAAG+GGG - chr7.4:38721451-38721470 MS.gene055116:intron 35.0%
! GCTAAAGGAGTGTATTAGAA+GGG - chr7.4:38721831-38721850 MS.gene055116:CDS 35.0%
! GTATTAGAAGGGTTTTCTCT+TGG - chr7.4:38721842-38721861 MS.gene055116:CDS 35.0%
! TAAAGGTTGGTTCAACTAGT+TGG - chr7.4:38722398-38722417 MS.gene055116:intron 35.0%
! TCAAAGCATTCACTTACTGT+GGG + chr7.4:38722142-38722161 None:intergenic 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG - chr7.4:38721917-38721936 MS.gene055116:CDS 35.0%
! TGCTAAAGGAGTGTATTAGA+AGG - chr7.4:38721830-38721849 MS.gene055116:CDS 35.0%
! TTCAAAGCATTCACTTACTG+TGG + chr7.4:38722143-38722162 None:intergenic 35.0%
! TTCCAGTTCAAGTTCAACTA+TGG - chr7.4:38722555-38722574 MS.gene055116:intron 35.0%
! TTTTCCCTGATTTCGGTATT+TGG + chr7.4:38722856-38722875 None:intergenic 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG - chr7.4:38721449-38721468 MS.gene055116:intron 35.0%
!! TCTTACTTTTCTTGTCCCTA+GGG + chr7.4:38723048-38723067 None:intergenic 35.0%
!! TTCTTACTTTTCTTGTCCCT+AGG + chr7.4:38723049-38723068 None:intergenic 35.0%
!!! TTTTTTTGGTCTCAATCCTC+CGG + chr7.4:38721589-38721608 None:intergenic 35.0%
AACGTGTTCCACTGTACATT+GGG - chr7.4:38723752-38723771 MS.gene055116:CDS 40.0%
AATGCGACTTTAACTGTCCT+AGG - chr7.4:38723584-38723603 MS.gene055116:CDS 40.0%
AATTCCAAAAATGGAACCGG+TGG + chr7.4:38722068-38722087 None:intergenic 40.0%
AGGAATCGAACTCGGAAATT+TGG - chr7.4:38722186-38722205 MS.gene055116:CDS 40.0%
AGTTTCATTGTAGAACAGGC+TGG - chr7.4:38723106-38723125 MS.gene055116:intron 40.0%
ATGGCAAACCTTATTCAGCA+AGG - chr7.4:38722960-38722979 MS.gene055116:CDS 40.0%
CAAAAAAAAAGTCATGGCCG+AGG - chr7.4:38721601-38721620 MS.gene055116:intron 40.0%
CATAGACGTGAAGGAGAATA+AGG + chr7.4:38721140-38721159 None:intergenic 40.0%
CTGCTATATGGTGGCATTTA+TGG - chr7.4:38723019-38723038 MS.gene055116:intron 40.0%
CTTTCCGATCGTGATTCAAT+CGG + chr7.4:38722586-38722605 None:intergenic 40.0%
GAATCGAACTCGGAAATTTG+GGG - chr7.4:38722188-38722207 MS.gene055116:CDS 40.0%
GACCTCTTTCTCTTAGAAAC+CGG - chr7.4:38721567-38721586 MS.gene055116:intron 40.0%
GATAATAGCATCAGAGGAAG+AGG - chr7.4:38721949-38721968 MS.gene055116:CDS 40.0%
GATTAAACAGGGGTCACAAT+TGG - chr7.4:38722474-38722493 MS.gene055116:intron 40.0%
GCAGTAGAAGAGAGTTATTC+AGG - chr7.4:38721983-38722002 MS.gene055116:CDS 40.0%
GGAATCGAACTCGGAAATTT+GGG - chr7.4:38722187-38722206 MS.gene055116:CDS 40.0%
GGGGCTGTAAATTCCAAAAA+TGG + chr7.4:38722077-38722096 None:intergenic 40.0%
GTTGAAGCAAGAACAAACAG+GGG - chr7.4:38721322-38721341 MS.gene055116:intron 40.0%
GTTTGGTAGGTGATTTCCAT+AGG - chr7.4:38722993-38723012 MS.gene055116:intron 40.0%
TAAGGTTTGCCATTAGAACC+TGG + chr7.4:38722953-38722972 None:intergenic 40.0%
TCAGCAAGACACTCATCATT+GGG + chr7.4:38722097-38722116 None:intergenic 40.0%
TCGAAGACACAAAGTTGGAA+GGG + chr7.4:38721164-38721183 None:intergenic 40.0%
TCTAACCTTACTGGTGTTCA+AGG - chr7.4:38721431-38721450 MS.gene055116:intron 40.0%
TGAACCGATTGAATCACGAT+CGG - chr7.4:38722579-38722598 MS.gene055116:intron 40.0%
TGCTGTAAATATTCAAGGGG+AGG - chr7.4:38721454-38721473 MS.gene055116:intron 40.0%
TGGCATTTATGGTTACCCTA+GGG - chr7.4:38723030-38723049 MS.gene055116:intron 40.0%
TTCCATAGGACACTGCTATA+TGG - chr7.4:38723007-38723026 MS.gene055116:intron 40.0%
! AATCGGACTGGAGATCAAAT+TGG + chr7.4:38722614-38722633 None:intergenic 40.0%
! ATTGTTTGAGGTCAAGTGGT+AGG - chr7.4:38721921-38721940 MS.gene055116:CDS 40.0%
! CAAAGCATTCACTTACTGTG+GGG + chr7.4:38722141-38722160 None:intergenic 40.0%
! TCAAGAAGAAAGCATGTGAG+TGG - chr7.4:38721206-38721225 MS.gene055116:intron 40.0%
!!! CTCGGCCATGACTTTTTTTT+TGG + chr7.4:38721603-38721622 None:intergenic 40.0%
ATCGATGATCTCAAGGAACC+AGG - chr7.4:38722932-38722951 MS.gene055116:CDS 45.0%
CAACGTGTTCCACTGTACAT+TGG - chr7.4:38723751-38723770 MS.gene055116:CDS 45.0%
CACAGTCCAAATCACGATTG+CGG - chr7.4:38721721-38721740 MS.gene055116:intron 45.0%
CACCATATAGCAGTGTCCTA+TGG + chr7.4:38723012-38723031 None:intergenic 45.0%
CAGCAAGACACTCATCATTG+GGG + chr7.4:38722096-38722115 None:intergenic 45.0%
CATAGGACACTGCTATATGG+TGG - chr7.4:38723010-38723029 MS.gene055116:intron 45.0%
CATTCGACACTTACTTCGGT+GGG + chr7.4:38723175-38723194 None:intergenic 45.0%
CTCTTTCTCTTAGAAACCGG+AGG - chr7.4:38721570-38721589 MS.gene055116:intron 45.0%
GACAGGGATAATAGCATCAG+AGG - chr7.4:38721943-38721962 MS.gene055116:CDS 45.0%
GTCAGCAAGACACTCATCAT+TGG + chr7.4:38722098-38722117 None:intergenic 45.0%
GTCGAAGACACAAAGTTGGA+AGG + chr7.4:38721165-38721184 None:intergenic 45.0%
GTCGCATTTGATTGCTACGA+CGG + chr7.4:38723541-38723560 None:intergenic 45.0%
GTGGCATTTATGGTTACCCT+AGG - chr7.4:38723029-38723048 MS.gene055116:intron 45.0%
GTGGTCTTTGATCCACTTGA+TGG - chr7.4:38722016-38722035 MS.gene055116:CDS 45.0%
TAACTCTCTTCTACTGCCAC+TGG + chr7.4:38721980-38721999 None:intergenic 45.0%
TCATTCGACACTTACTTCGG+TGG + chr7.4:38723176-38723195 None:intergenic 45.0%
TCGTGTCGAAGACACAAAGT+TGG + chr7.4:38721169-38721188 None:intergenic 45.0%
TTCATTGTAGAACAGGCTGG+TGG - chr7.4:38723109-38723128 MS.gene055116:intron 45.0%
TTTGAACTAGGGTCGAACTC+TGG - chr7.4:38721536-38721555 MS.gene055116:intron 45.0%
! AGATCGGCAGCCACAATTTT+TGG + chr7.4:38723639-38723658 None:intergenic 45.0%
! CTCAAGGAACCAGGTTCTAA+TGG - chr7.4:38722941-38722960 MS.gene055116:CDS 45.0%
! CTCCGGTTTCTAAGAGAAAG+AGG + chr7.4:38721572-38721591 None:intergenic 45.0%
AGAGGAAGAGGATGTACCAG+TGG - chr7.4:38721961-38721980 MS.gene055116:CDS 50.0%
CAGCACCTTGAACACCAGTA+AGG + chr7.4:38721439-38721458 None:intergenic 50.0%
CCAAGAGCAGGCAAGTTCAT+CGG - chr7.4:38722422-38722441 MS.gene055116:intron 50.0%
CTAGAAGGTTGCTTCCTGGT+TGG + chr7.4:38722715-38722734 None:intergenic 50.0%
GATGAGTGTCTTGCTGACGT+AGG - chr7.4:38722100-38722119 MS.gene055116:CDS 50.0%
GCTGGTGGAAAAGGTTCAGA+TGG - chr7.4:38723124-38723143 MS.gene055116:intron 50.0%
GTAAACGAGCCTACGTCATC+AGG + chr7.4:38722218-38722237 None:intergenic 50.0%
GTAGAACAGGCTGGTGGAAA+AGG - chr7.4:38723115-38723134 MS.gene055116:intron 50.0%
TCTGTGCTCCCAATGTACAG+TGG + chr7.4:38723763-38723782 None:intergenic 50.0%
TGAGGTCAAGTGGTAGGACA+GGG - chr7.4:38721927-38721946 MS.gene055116:CDS 50.0%
TGCAGTAACCAGCTGCTAGA+AGG + chr7.4:38722730-38722749 None:intergenic 50.0%
TGGAAGGGACATAGACGTGA+AGG + chr7.4:38721149-38721168 None:intergenic 50.0%
TTGAGGTCAAGTGGTAGGAC+AGG - chr7.4:38721926-38721945 MS.gene055116:CDS 50.0%
! ACTGTACATTGGGAGCACAG+AGG - chr7.4:38723762-38723781 MS.gene055116:CDS 50.0%
! AGAAAGCATGTGAGTGGCTC+TGG - chr7.4:38721212-38721231 MS.gene055116:intron 50.0%
! CGAACTCGGAAATTTGGGGT+TGG - chr7.4:38722192-38722211 MS.gene055116:CDS 50.0%
!! GGACACTGCAGCATCGATAT+TGG + chr7.4:38722047-38722066 None:intergenic 50.0%
!!! GTGTCCACCGGTTCCATTTT+TGG - chr7.4:38722061-38722080 MS.gene055116:CDS 50.0%
ATCGATGCTGCAGTGTCCAC+CGG - chr7.4:38722049-38722068 MS.gene055116:CDS 55.0%
CAACTAGTTGGGCCAAGAGC+AGG - chr7.4:38722410-38722429 MS.gene055116:intron 55.0%
CCGATGAACTTGCCTGCTCT+TGG + chr7.4:38722425-38722444 None:intergenic 55.0%
GAGCAGGCAAGTTCATCGGT+TGG - chr7.4:38722426-38722445 MS.gene055116:intron 55.0%
GCTGCTAGAAGGTTGCTTCC+TGG + chr7.4:38722719-38722738 None:intergenic 55.0%
GGAAGCAACCTTCTAGCAGC+TGG - chr7.4:38722719-38722738 MS.gene055116:intron 55.0%
GGAGTGAGATGCATGGCTGT+TGG - chr7.4:38721236-38721255 MS.gene055116:intron 55.0%
! CATTGGGAGCACAGAGGAAG+TGG - chr7.4:38723768-38723787 MS.gene055116:CDS 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG - chr7.4:38721229-38721248 MS.gene055116:intron 55.0%
! GGCTGTTGGTGAAGTAGCTG+CGG - chr7.4:38721250-38721269 MS.gene055116:intron 55.0%
!! AAGCATGTGAGTGGCTCTGG+AGG - chr7.4:38721215-38721234 MS.gene055116:intron 55.0%
!! TGGGGTTGGCCTGATGACGT+AGG - chr7.4:38722206-38722225 MS.gene055116:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38721086 38723816 38721086 ID=MS.gene055116
chr7.4 mRNA 38721086 38723816 38721086 ID=MS.gene055116.t1;Parent=MS.gene055116
chr7.4 exon 38723394 38723816 38723394 ID=MS.gene055116.t1.exon1;Parent=MS.gene055116.t1
chr7.4 CDS 38723394 38723816 38723394 ID=cds.MS.gene055116.t1;Parent=MS.gene055116.t1
chr7.4 exon 38722758 38722991 38722758 ID=MS.gene055116.t1.exon2;Parent=MS.gene055116.t1
chr7.4 CDS 38722758 38722991 38722758 ID=cds.MS.gene055116.t1;Parent=MS.gene055116.t1
chr7.4 exon 38721722 38722228 38721722 ID=MS.gene055116.t1.exon3;Parent=MS.gene055116.t1
chr7.4 CDS 38721722 38722228 38721722 ID=cds.MS.gene055116.t1;Parent=MS.gene055116.t1
chr7.4 exon 38721086 38721157 38721086 ID=MS.gene055116.t1.exon4;Parent=MS.gene055116.t1
chr7.4 CDS 38721086 38721157 38721086 ID=cds.MS.gene055116.t1;Parent=MS.gene055116.t1
Gene Sequence

>MS.gene055116

ATGGTTGCAATGGCAGCAGCAACAGCATCATCACAGTTAATATTCTCAAAACCTTATTCTCCTTCACGTCTATGTCCCTTCCAACTTTGTGTCTTCGACACGAAATCTGTGTTATCAAGTTCAAGAAGAAAGCATGTGAGTGGCTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTGCGGAGACGAAGAAAAGAAGTAGTTATGAGCTTATAACATTGACTAGTTGGTTGTTGAAGCAAGAACAAACAGGGGTTATTGATGCTGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCTGTAAATATTCAAGGGGAGGATCAGAAAAAACTTGATGTTGTCTCAAATGAGGTATGTATTAGATGTTATTTAGTTAGTTTTGAACTAGGGTCGAACTCTGGATTACTAAGACCTCTTTCTCTTAGAAACCGGAGGATTGAGACCAAAAAAAAAGTCATGGCCGAGGTTGAAATAATTGATATTGCTGAGAATCGCAATTAAATGCGACTAATGTTGCCTCAATTACAATCATTTTGAATCTCGAGACGTCACAAAATTTATGTCACAGTCCAAATCACGATTGCGGATTTTTTTAAGAAATCCCTTGTTAAATATGCTTCAATTCATTGAGAAAAATTGATTTTGACCAAATTCAAATTGCAAAATCATTTATGCTAAAGGAGTGTATTAGAAGGGTTTTCTCTTGGTCACTAATGTTAATAGACAATGTATTGTTTTCTATTTTTTGTTCAGGTATTCTCAAATTGTTTGAGGTCAAGTGGTAGGACAGGGATAATAGCATCAGAGGAAGAGGATGTACCAGTGGCAGTAGAAGAGAGTTATTCAGGAAACTACATTGTGGTCTTTGATCCACTTGATGGTTCATCCAATATCGATGCTGCAGTGTCCACCGGTTCCATTTTTGGAATTTACAGCCCCAATGATGAGTGTCTTGCTGACGTAGGCGATGAGTCTGATGACCCCACAGTAAGTGAATGCTTTGAAATTGATTGTTTTCATTTATGATTAGGAATCGAACTCGGAAATTTGGGGTTGGCCTGATGACGTAGGCTCGTTTACATTTGATTGATTAATTAACTTGTTAAGAAAAATGTGACTAATATAAGTGTGAATGAATCAAGTGGAATACACTTGTGATAAATGAAATTGTCATTTTGAAAGTTTTCAGTTGAATCACTACATAATGTTAAAAGATATAGTAACAAGCAACTTAGAAACCTAAAGGTTGGTTCAACTAGTTGGGCCAAGAGCAGGCAAGTTCATCGGTTGGTTTGATCCCAACGATACCTTAATTTGATTAAACAGGGGTCACAATTGGTTCAGCCCGTTCTTACTCTTTGTATTATTATTTTTCACTTTCTAAATATCTTTTAAACTTCCAGTTCAAGTTCAACTATGGTTGAACCGATTGAATCACGATCGGAAAGTCTCACCAATTTGATCTCCAGTCCGATTTTTAAAACATTGTTTAACACAATACATATATAAATTGCAGCTTGGCACAGAAGAACAACGATGCATTGTAAATGTATGCCAACCAGGAAGCAACCTTCTAGCAGCTGGTTACTGCATGTACTCTAGCTCAGTAATCTTTGTTCTAACAATCGGTAAAGGAGTGTTTGTATTCACATTAGATCCAATGTATGGAGAATTTGTTTTAACTCAAGAAAATCTCCAAATACCGAAATCAGGGAAAATATATTCTTTCAATGAAGGGAATTACAAGTTGTGGGATGACAACTTGAAGAAATACATCGATGATCTCAAGGAACCAGGTTCTAATGGCAAACCTTATTCAGCAAGGTATATTGGTAGTTTGGTAGGTGATTTCCATAGGACACTGCTATATGGTGGCATTTATGGTTACCCTAGGGACAAGAAAAGTAAGAATGGAAAGCTTAGGCTTTTATATGAGTGTGCTCCAATGAGTTTCATTGTAGAACAGGCTGGTGGAAAAGGTTCAGATGGTCATCAAAGAGTACTTGACATTCAACCCACCGAAGTAAGTGTCGAATGACTTTTACCTTGTTTAGATAAACTACTTAATTAAGCGCTTATAGTTTAGGAAATTATCACACAACTGCATATGCATAAGCTGTTTCTATCACAAAAGATAAAATAAGTCAAATTGTTTTTATATCAACTATAAGCTAGTTTCGTAAGTAATTTTGGAGAGTTTAGGGAAATGAACTGAAATGAGCTTATGGACATGACATAAGCTAATCTATAAGCTCTTCCAAACAGTCTTTTAAGTACTTATGTCAGTAGATAAACTCAAATAAGTCAATTCAAACAAGTCTTGTACATGTTACTAAAAGCCACTGTTTTAAGTCACGATTACGATCACATTTGTCATAAACCGTCGTAGCAATCAAATGCGACTGCAGTCAAATGAACTGCAGTCAAATGCGACTTTAACTGTCCTAGGAAAGACATCAAATACCTTGATGTAACAGTCCAAAAATTGTGGCTGCCGATCTTCTACTAAACCATGATAAAAATATAATAGTTTATGATAAATGGTATGATGGATACTCTTATTTAATTTTCCCTTTTTTTTGGACAGATTCATCAACGTGTTCCACTGTACATTGGGAGCACAGAGGAAGTGGAGAAAGTTGAAAAGTACTTAGCTTAA

Protein sequence

>MS.gene055116.t1

MVAMAAATASSQLIFSKPYSPSRLCPFQLCVFDTKSVLSSSRRKHVSGSGGVRCMAVGEVAAETKKRSSYELITLTSWLLKQEQTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADVGDESDDPTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPMYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEPGSNGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA