AlfalfaGEDB | MS.gene068338

M. sativa cultivar XinJiangDaYe / MS.gene068338

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068338.t1	XP_013444640.2	95.3	253	12	0	1	253	67	319	6.40E-141	510

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068338.t1	Q9M365	62.3	252	95	0	2	253	108	359	5.5e-93	342.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068338.t1	A0A1S2YVP8	88.9	253	28	0	1	253	68	320	1.7e-132	481.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052447	MS.gene068338	0.800516	1.39E-48	-1.69E-46
MS.gene05265	MS.gene068338	0.819856	9.32E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068338.t1	MTR_8g027735	95.154	227	11	0	1	227	67	293	6.10e-165	458

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068338.t1	AT3G61730	62.302	252	95	0	2	253	108	359	8.17e-119	343
MS.gene068338.t1	AT5G36000	58.730	252	104	0	2	253	104	355	1.37e-112	328
MS.gene068338.t1	AT3G62500	49.390	164	62	3	63	226	178	320	1.21e-43	151
MS.gene068338.t1	AT3G62500	49.390	164	62	3	63	226	178	320	1.43e-43	152

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Find 68 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGAATCTGGATTGC+TGG	0.401140	8.3:-66372982	MS.gene068338:intron
AAACGAGCTTATGGGGCTGC+TGG	0.488804	8.3:-66372552	MS.gene068338:CDS
AAATGGGAACTGGGATTACG+AGG	0.675337	8.3:-66372598	MS.gene068338:CDS
AACTGGGATTACGAGGTTGT+AGG	0.542235	8.3:-66372591	MS.gene068338:CDS
AAGACTACGAAAATGGGAAC+TGG	0.425872	8.3:-66372608	MS.gene068338:CDS
AAGCTCTACACTTCAGCTTT+TGG	0.288606	8.3:-66373855	MS.gene068338:intron
AAGTACCAAGCTATGAGGGC+AGG	0.567054	8.3:-66371308	MS.gene068338:CDS
AAGTATTGAGGTCACAAACC+GGG	0.583633	8.3:+66372837	None:intergenic
AATGCCACAGGTGGAGGAGA+TGG	0.508135	8.3:+66373888	None:intergenic
AATTACCATCGCAAGTATTG+AGG	0.518570	8.3:+66372825	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCACTGATGAATTATTCA+TGG	+	chr8.3:66372472-66372491	None:intergenic	30.0%
AAGGGATATACAAAACTCAT+TGG	+	chr8.3:66372445-66372464	None:intergenic	30.0%
AATGAATGTATAGATAGTCC+AGG	-	chr8.3:66372955-66372974	MS.gene068338:intron	30.0%
AATGACATGACATTAGATTG+TGG	+	chr8.3:66372829-66372848	None:intergenic	30.0%
AATGGTAAACAAATTGGATG+GGG	+	chr8.3:66373545-66373564	None:intergenic	30.0%
AGAAGATAGTTACTAAGTTC+TGG	-	chr8.3:66373091-66373110	MS.gene068338:CDS	30.0%
AGAATGGTAAACAAATTGGA+TGG	+	chr8.3:66373547-66373566	None:intergenic	30.0%
ATATCAAGAAACGAGCTTAT+GGG	-	chr8.3:66372674-66372693	MS.gene068338:intron	30.0%
CAGTTATGGAAATGAATTTG+AGG	-	chr8.3:66371609-66371628	MS.gene068338:intron	30.0%
CATTGTCAGATCTAGATTTA+GGG	+	chr8.3:66371835-66371854	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	66371259	66373997	66371259	ID=MS.gene068338
chr8.3	mRNA	66371259	66373997	66371259	ID=MS.gene068338.t1;Parent=MS.gene068338
chr8.3	exon	66373856	66373997	66373856	ID=MS.gene068338.t1.exon1;Parent=MS.gene068338.t1
chr8.3	CDS	66373856	66373997	66373856	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1
chr8.3	exon	66373722	66373766	66373722	ID=MS.gene068338.t1.exon2;Parent=MS.gene068338.t1
chr8.3	CDS	66373722	66373766	66373722	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1
chr8.3	exon	66372983	66373147	66372983	ID=MS.gene068338.t1.exon3;Parent=MS.gene068338.t1
chr8.3	CDS	66372983	66373147	66372983	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1
chr8.3	exon	66372831	66372878	66372831	ID=MS.gene068338.t1.exon4;Parent=MS.gene068338.t1
chr8.3	CDS	66372831	66372878	66372831	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1
chr8.3	exon	66372508	66372678	66372508	ID=MS.gene068338.t1.exon5;Parent=MS.gene068338.t1
chr8.3	CDS	66372508	66372678	66372508	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1
chr8.3	exon	66371987	66372094	66371987	ID=MS.gene068338.t1.exon6;Parent=MS.gene068338.t1
chr8.3	CDS	66371987	66372094	66371987	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1
chr8.3	exon	66371259	66371341	66371259	ID=MS.gene068338.t1.exon7;Parent=MS.gene068338.t1
chr8.3	CDS	66371259	66371341	66371259	ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1

Gene Sequence

>MS.gene068338

ATGCTGGCAGCGACAAACCGATGGTTCCGCCGTGCTATCATGGATGATGCTATTTGGAAGTTCGTTTGCTTGCGTGACCTTCAAGTTCCATCTCCTCCACCTGTGGCATTCAAGTGGAGCAAGCTCTACACTTCAGCTTTTGGTAAATAGAACCTATACGCGTTCATCGATGTTCATGAATATGCATTGCTACTGCCTAATTAACATTGATTTCGAAATTGGAAATTTCAGATGGGAGTCACTCCTACAAGTTCCGACAGCAGGAGAAGCACATTGGTAATTTTTCACATGTTGTATCTATATCCTAATATATTGTGAGATTCACAATAAATTTTAATAGATTCCACACACAGTTATGGAAATGAATTTGAGGTGGTAAGTGACCGCACAGTTAATGCTTTTTATCATTTGGGAATATTAAAAGGGCAACCCGGTGCACTGAAGCATTTGGGAATATTGCACAATTAAAATTTTGAGTTTTTGATTTGTGTGAGTCATCAATCTTTTATCAAATGCCTGTGTGAGTCATCAATCTTCTATCAAATGCCTTAGATTGACAAGAGTTACTGAATGCCCTAAATCTAGATCTGACAATGATATATGTACATGGTAAACCTTATTGCTTATGCAAAATTCTTTATTCTATATAAATGTAATTTCTTCTTTTTTATTGCTTAGCTATGACTCAAATTCATGATTTAGATACCTAGAATTTATCCAGCCATTGACTGATTCATTCTTATACAATGTATATTTCACATATTGTGTTACATGCATTATGTGCAGCTTTAGCACTAGTAGACTTGTAAAGTTTTTGATGTTGTAAATATTTTATAATATGTTCTATCAGATTGGATGCGCATCGGTGCTTTTTCCTTTGATTCTTCAGTGGCCCTCCTGACAGAGAGACTGAATTTTCCGGGGGAGTTAAAGAAAGAAGAAAGCATGGAAACTATGTTGAAGACTCACGGTTGTTGCTTTCTGGACAACATTAAACCTGGAATCTGGATTGCTGGTACTCTCCAGTTATCTTTGACAATATAACTATCATTGATATCAATTAATTTAGCAGATGATATAAGTTTTCGATTAAATAAAGTTTGTTTGTTTAAATTTCAGATCTGCAGCTTGTGCGATGCCCGGTTTGTGACCTCAATACTTGCGATGGTAATTTCAATATAATCCAATGAGTTTTGTATATCCCTTAACACCATGAATAATTCATCAGTGGTTACTGTTTTGTACTGCAAGGGTTTGCGTTAGAATAATATGGCTAGAAAATTCTTACTCAATTTAACATGTTTCTCCTGCTTATATAGGAACAATGCAGACATTGGATGCAAGGCATATAGAGCTGTTCCTCTGTGAAGACTACGAAAATGGGAACTGGGATTACGAGGTTGTAGGATCTCATGATATCAAGAAACGAGCTTATGGGGCTGCTGGCTCCATTTTTGATGTGAAACACCTGGCGAGTTCTTCTACGTCTGGTAAATCTTTATACATCGAGTCAACTTACCAACAGTCAGTGGCCTTGTTAATGTTTTTCTTTAAGAATTAAGATAAACCACAATCTAATGTCATGTCATTGCATAAAGTAGTTACATTCTGTCTAGTAGAGTAGAAACATATATATATGGAAATTATGCTTTTTACCAGTTTAAGTTAAGGTTACGCATTTTTATCTGCAGTGAAGAATGAATGTATAGATAGTCCAGGAACAAATTAATTTCAAAAAGAATGTGAAGCCTCCAAATTATTCTTGGTTTGGGGAATATGCATTAGAGTAAATTGATGTTCTAAATTAATGCTTTTTATTGCTTACCCTTCCAAGAAGATAGTTACTAAGTTCTGGCATTAACACATCACACTAATATGTTTTAATCTTTAAATTAAATGGCAGCGGTATTTGATTACAAGTCATGGATTGGGAAGGATAATTACTGGCAACCCAAGACCATGATTGCTTTTCATGCAGCAGCTGTGAACACTAATTTACAAGAAAATCAAGGTTAGAAACGTTAACAGCTTTCATGTCCCTGACTCAATTACTGAAGTAAATATCAGAAAACCTGCTATAAGAATAAGTACAAATCTGATGACAGCAACCCGCTGCATATTAACCAGTTACCAAAACAAACAAATCAGTAAAATCATCCCTATGCTACAACAATTGATTCACTCCAATACAGATTTTTATTGAGTCTCCCTTTGCCTCCAGTGTGTGTACCAAGAAGGACAAGTTCCTTCATCTGTTATTGCGGTTCTGCAAAGTCGGTTAGTCCCCATCCAATTTGTTTACCATTCTATTTGTCCAATCTCAATTGATGTCCAACTTCCCTTCTATTCCAATACCTGAATAACATTTCTCTTTCCCAAACTAACTCTTCCAAATTTCCAATACTTAATTAAACTCCACAACTATTCAAGCTAATTCACCATCAACTGAGATAAGCATGTAGTCTCCACCAATCTACTACAGTCCCAAATCTTCTTCTTTTGGATAAATATTATCAATGCATGAAACTCATCTGAACATCTTTATTTTGCATATTATTAAGTAATGAAACTCATGTAGTTAGTTCCAATTGTTTTTTTCTTTATATAGTTACTTTGATTTCTCATGATGTTCCATTTTATTTTTCAATACAAGCAGGTCTTCATGTGAAGTACCAAGCTATGAGGGCAGGACCGGGTGGAGAAGTTGTTTCCATCAGAATCTCTCAGCAGCTGCTGTGA

Protein sequence

>MS.gene068338.t1

MLAATNRWFRRAIMDDAIWKFVCLRDLQVPSPPPVAFKWSKLYTSAFDGSHSYKFRQQEKHIDWMRIGAFSFDSSVALLTERLNFPGELKKEESMETMLKTHGCCFLDNIKPGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEDYENGNWDYEVVGSHDIKKRAYGAAGSIFDVKHLASSSTSAVFDYKSWIGKDNYWQPKTMIAFHAAAVNTNLQENQGLHVKYQAMRAGPGGEVVSIRISQQLL