Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068338.t1 | XP_013444640.2 | 95.3 | 253 | 12 | 0 | 1 | 253 | 67 | 319 | 6.40E-141 | 510 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068338.t1 | Q9M365 | 62.3 | 252 | 95 | 0 | 2 | 253 | 108 | 359 | 5.5e-93 | 342.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068338.t1 | A0A1S2YVP8 | 88.9 | 253 | 28 | 0 | 1 | 253 | 68 | 320 | 1.7e-132 | 481.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene068338 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene05265 | MS.gene068338 | 0.819856 | 9.32E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068338.t1 | MTR_8g027735 | 95.154 | 227 | 11 | 0 | 1 | 227 | 67 | 293 | 6.10e-165 | 458 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068338.t1 | AT3G61730 | 62.302 | 252 | 95 | 0 | 2 | 253 | 108 | 359 | 8.17e-119 | 343 |
| MS.gene068338.t1 | AT5G36000 | 58.730 | 252 | 104 | 0 | 2 | 253 | 104 | 355 | 1.37e-112 | 328 |
| MS.gene068338.t1 | AT3G62500 | 49.390 | 164 | 62 | 3 | 63 | 226 | 178 | 320 | 1.21e-43 | 151 |
| MS.gene068338.t1 | AT3G62500 | 49.390 | 164 | 62 | 3 | 63 | 226 | 178 | 320 | 1.43e-43 | 152 |
Find 68 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8.3:-66373013 | MS.gene068338:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8.3:-66372615 | MS.gene068338:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8.3:-66373941 | MS.gene068338:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8.3:-66372561 | MS.gene068338:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8.3:-66373855 | MS.gene068338:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8.3:+66372979 | None:intergenic |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8.3:-66372982 | MS.gene068338:intron |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8.3:-66372990 | MS.gene068338:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8.3:+66372024 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8.3:-66372067 | MS.gene068338:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8.3:-66372560 | MS.gene068338:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8.3:-66372051 | MS.gene068338:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8.3:-66372608 | MS.gene068338:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8.3:-66373955 | MS.gene068338:CDS |
| CCAAGCTATGAGGGCAGGAC+CGG | 0.453746 | 8.3:-66371303 | MS.gene068338:CDS |
| CTCCTGCTGTCGGAACTTGT+AGG | 0.455095 | 8.3:+66373732 | None:intergenic |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8.3:+66373882 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8.3:-66372066 | MS.gene068338:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8.3:-66372614 | MS.gene068338:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.473939 | 8.3:+66372836 | None:intergenic |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8.3:+66372018 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8.3:-66373049 | MS.gene068338:CDS |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8.3:-66372552 | MS.gene068338:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8.3:-66372072 | MS.gene068338:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 8.3:+66373079 | None:intergenic |
| CCGGTCCTGCCCTCATAGCT+TGG | 0.493687 | 8.3:+66371303 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8.3:-66372507 | MS.gene068338:intron |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8.3:-66372855 | MS.gene068338:CDS |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8.3:+66373888 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8.3:+66373057 | None:intergenic |
| ATGTGAAGTACCAAGCTATG+AGG | 0.516901 | 8.3:-66371313 | MS.gene068338:CDS |
| AATTACCATCGCAAGTATTG+AGG | 0.518570 | 8.3:+66372825 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8.3:-66373881 | MS.gene068338:CDS |
| CTCCTACAAGTTCCGACAGC+AGG | 0.520835 | 8.3:-66373734 | MS.gene068338:CDS |
| ACTAATTTACAAGAAAATCA+AGG | 0.528332 | 8.3:-66371986 | MS.gene068338:intron |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8.3:+66373876 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8.3:+66373898 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8.3:-66372661 | MS.gene068338:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8.3:-66372591 | MS.gene068338:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8.3:+66372025 | None:intergenic |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8.3:-66372997 | MS.gene068338:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8.3:+66373958 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8.3:-66372653 | MS.gene068338:CDS |
| CAAGCTATGAGGGCAGGACC+GGG | 0.564131 | 8.3:-66371302 | MS.gene068338:CDS |
| AAGTACCAAGCTATGAGGGC+AGG | 0.567054 | 8.3:-66371308 | MS.gene068338:CDS |
| GAGGGCCACTGAAGAATCAA+AGG | 0.570525 | 8.3:+66373101 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8.3:+66373879 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8.3:-66373892 | MS.gene068338:CDS |
| AAGTATTGAGGTCACAAACC+GGG | 0.583633 | 8.3:+66372837 | None:intergenic |
| TGTGAAGTACCAAGCTATGA+GGG | 0.584398 | 8.3:-66371312 | MS.gene068338:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8.3:-66372559 | MS.gene068338:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8.3:-66373132 | MS.gene068338:intron |
| CAATGTGCTTCTCCTGCTGT+CGG | 0.593050 | 8.3:+66373722 | None:intergenic |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8.3:+66372508 | None:intergenic |
| TGTGACCTCAATACTTGCGA+TGG | 0.611498 | 8.3:-66372830 | MS.gene068338:intron |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 8.3:+66373082 | None:intergenic |
| CGACAGCAGGAGAAGCACAT+TGG | 0.619455 | 8.3:-66373721 | MS.gene068338:intron |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8.3:-66373027 | MS.gene068338:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8.3:-66373974 | MS.gene068338:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8.3:+66373946 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8.3:-66372062 | MS.gene068338:CDS |
| GCTATGAGGGCAGGACCGGG+TGG | 0.630925 | 8.3:-66371299 | MS.gene068338:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.634339 | 8.3:+66373083 | None:intergenic |
| CAGCTGCTGAGAGATTCTGA+TGG | 0.636966 | 8.3:+66371265 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8.3:-66372607 | MS.gene068338:CDS |
| ATGGAAACAACTTCTCCACC+CGG | 0.654340 | 8.3:+66371284 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8.3:-66372598 | MS.gene068338:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8.3:+66373949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAAGAAAAAAACAAT+TGG | + | chr8.3:66373846-66373865 | None:intergenic | 10.0% |
| !!! | GTTTTAATCTTTAAATTAAA+TGG | - | chr8.3:66373136-66373155 | MS.gene068338:intron | 10.0% |
| !!! | TTAATTAAGTATTGGAAATT+TGG | + | chr8.3:66373651-66373670 | None:intergenic | 15.0% |
| !! | AAATAGAATGGTAAACAAAT+TGG | + | chr8.3:66373551-66373570 | None:intergenic | 20.0% |
| !! | ACTAATTTACAAGAAAATCA+AGG | - | chr8.3:66373248-66373267 | MS.gene068338:intron | 20.0% |
| !! | AGAGTAGAAACATATATATA+TGG | - | chr8.3:66372876-66372895 | MS.gene068338:intron | 20.0% |
| !! | ATCATTTGGGAATATTAAAA+GGG | - | chr8.3:66371662-66371681 | MS.gene068338:intron | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | + | chr8.3:66372794-66372813 | None:intergenic | 20.0% |
| !! | GCTTGTATTGAAAAATAAAA+TGG | + | chr8.3:66373893-66373912 | None:intergenic | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | - | chr8.3:66372091-66372110 | MS.gene068338:intron | 20.0% |
| !! | TATCATTTGGGAATATTAAA+AGG | - | chr8.3:66371661-66371680 | MS.gene068338:intron | 20.0% |
| !! | TTTCGAAATCAATGTTAATT+AGG | + | chr8.3:66371457-66371476 | None:intergenic | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | - | chr8.3:66371648-66371667 | MS.gene068338:intron | 20.0% |
| !!! | ATTAACATTGATTTCGAAAT+TGG | - | chr8.3:66371458-66371477 | MS.gene068338:intron | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | - | chr8.3:66371649-66371668 | MS.gene068338:intron | 20.0% |
| !!! | TTTTACTGATTTGTTTGTTT+TGG | + | chr8.3:66373392-66373411 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTCAATACAAGC+AGG | - | chr8.3:66373893-66373912 | MS.gene068338:CDS | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | + | chr8.3:66372976-66372995 | None:intergenic | 20.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | - | chr8.3:66373142-66373161 | MS.gene068338:intron | 25.0% |
| ! | GACTCAATAAAAATCTGTAT+TGG | + | chr8.3:66373445-66373464 | None:intergenic | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | + | chr8.3:66372284-66372303 | None:intergenic | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | + | chr8.3:66371983-66372002 | None:intergenic | 25.0% |
| ! | TATCCAAAAGAAGAAGATTT+GGG | + | chr8.3:66373745-66373764 | None:intergenic | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | + | chr8.3:66371565-66371584 | None:intergenic | 25.0% |
| ! | TGTGGAGTTTAATTAAGTAT+TGG | + | chr8.3:66373659-66373678 | None:intergenic | 25.0% |
| ! | TTATCCAAAAGAAGAAGATT+TGG | + | chr8.3:66373746-66373765 | None:intergenic | 25.0% |
| ! | TTTGTACTTATTCTTATAGC+AGG | + | chr8.3:66373333-66373352 | None:intergenic | 25.0% |
| !! | AAATTTGGAAGAGTTAGTTT+GGG | + | chr8.3:66373636-66373655 | None:intergenic | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | + | chr8.3:66371876-66371895 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | + | chr8.3:66372464-66372483 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | + | chr8.3:66372463-66372482 | None:intergenic | 25.0% |
| !!! | CTTTTTACCAGTTTAAGTTA+AGG | - | chr8.3:66372907-66372926 | MS.gene068338:intron | 25.0% |
| AACCACTGATGAATTATTCA+TGG | + | chr8.3:66372472-66372491 | None:intergenic | 30.0% | |
| AAGGGATATACAAAACTCAT+TGG | + | chr8.3:66372445-66372464 | None:intergenic | 30.0% | |
| AATGAATGTATAGATAGTCC+AGG | - | chr8.3:66372955-66372974 | MS.gene068338:intron | 30.0% | |
| AATGACATGACATTAGATTG+TGG | + | chr8.3:66372829-66372848 | None:intergenic | 30.0% | |
| AATGGTAAACAAATTGGATG+GGG | + | chr8.3:66373545-66373564 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | - | chr8.3:66373091-66373110 | MS.gene068338:CDS | 30.0% | |
| AGAATGGTAAACAAATTGGA+TGG | + | chr8.3:66373547-66373566 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | - | chr8.3:66372674-66372693 | MS.gene068338:intron | 30.0% | |
| CAGTTATGGAAATGAATTTG+AGG | - | chr8.3:66371609-66371628 | MS.gene068338:intron | 30.0% | |
| CATTGTCAGATCTAGATTTA+GGG | + | chr8.3:66371835-66371854 | None:intergenic | 30.0% | |
| CGAAATTGGAAATTTCAGAT+GGG | - | chr8.3:66371472-66371491 | MS.gene068338:intron | 30.0% | |
| CTCCAAATTATTCTTGGTTT+GGG | - | chr8.3:66373008-66373027 | MS.gene068338:CDS | 30.0% | |
| CTGACAATGATATATGTACA+TGG | - | chr8.3:66371846-66371865 | MS.gene068338:intron | 30.0% | |
| GAAATTTGGAAGAGTTAGTT+TGG | + | chr8.3:66373637-66373656 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | + | chr8.3:66373091-66373110 | None:intergenic | 30.0% | |
| GAATCAATTGTTGTAGCATA+GGG | + | chr8.3:66373419-66373438 | None:intergenic | 30.0% | |
| GAATGGTAAACAAATTGGAT+GGG | + | chr8.3:66373546-66373565 | None:intergenic | 30.0% | |
| GAGAAATGTTATTCAGGTAT+TGG | + | chr8.3:66373610-66373629 | None:intergenic | 30.0% | |
| GTTAAAGAAAGAAGAAAGCA+TGG | - | chr8.3:66372185-66372204 | MS.gene068338:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | + | chr8.3:66373086-66373105 | None:intergenic | 30.0% | |
| TCATTGTCAGATCTAGATTT+AGG | + | chr8.3:66371836-66371855 | None:intergenic | 30.0% | |
| TCGAAATTGGAAATTTCAGA+TGG | - | chr8.3:66371471-66371490 | MS.gene068338:intron | 30.0% | |
| TGAATCAATTGTTGTAGCAT+AGG | + | chr8.3:66373420-66373439 | None:intergenic | 30.0% | |
| TTACTTCAGTAATTGAGTCA+GGG | + | chr8.3:66373299-66373318 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | + | chr8.3:66373087-66373106 | None:intergenic | 30.0% | |
| TTATGGAAATGAATTTGAGG+TGG | - | chr8.3:66371612-66371631 | MS.gene068338:intron | 30.0% | |
| TTGAGATTGGACAAATAGAA+TGG | + | chr8.3:66373563-66373582 | None:intergenic | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | - | chr8.3:66373168-66373187 | MS.gene068338:intron | 30.0% | |
| TTTACTTCAGTAATTGAGTC+AGG | + | chr8.3:66373300-66373319 | None:intergenic | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | - | chr8.3:66373167-66373186 | MS.gene068338:intron | 30.0% | |
| ! | TCCAAATTATTCTTGGTTTG+GGG | - | chr8.3:66373009-66373028 | MS.gene068338:CDS | 30.0% |
| ! | TGAATTAGCTTGAATAGTTG+TGG | + | chr8.3:66373677-66373696 | None:intergenic | 30.0% |
| ! | TTTTTCCTTTGATTCTTCAG+TGG | - | chr8.3:66372128-66372147 | MS.gene068338:intron | 30.0% |
| !! | ATTCAGGTATTGGAATAGAA+GGG | + | chr8.3:66373600-66373619 | None:intergenic | 30.0% |
| !! | GATAAAAAGCATTAACTGTG+CGG | + | chr8.3:66371645-66371664 | None:intergenic | 30.0% |
| !! | TATTCAGGTATTGGAATAGA+AGG | + | chr8.3:66373601-66373620 | None:intergenic | 30.0% |
| !!! | GATTTGTTTGTTTTGGTAAC+TGG | + | chr8.3:66373385-66373404 | None:intergenic | 30.0% |
| ACAACATTAAACCTGGAATC+TGG | - | chr8.3:66372244-66372263 | MS.gene068338:intron | 35.0% | |
| AGTTCCTTCATCTGTTATTG+CGG | - | chr8.3:66373500-66373519 | MS.gene068338:intron | 35.0% | |
| AGTTGGACATCAATTGAGAT+TGG | + | chr8.3:66373576-66373595 | None:intergenic | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | - | chr8.3:66371595-66371614 | MS.gene068338:intron | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | + | chr8.3:66373213-66373232 | None:intergenic | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | - | chr8.3:66372467-66372486 | MS.gene068338:intron | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | + | chr8.3:66372710-66372729 | None:intergenic | 35.0% | |
| CAGTAACTCTTGTCAATCTA+AGG | + | chr8.3:66371808-66371827 | None:intergenic | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | - | chr8.3:66372556-66372575 | MS.gene068338:CDS | 35.0% | |
| CCAAACCAAGAATAATTTGG+AGG | + | chr8.3:66373010-66373029 | None:intergenic | 35.0% | |
| CCTCCAAATTATTCTTGGTT+TGG | - | chr8.3:66373007-66373026 | MS.gene068338:CDS | 35.0% | |
| CGGTATTTGATTACAAGTCA+TGG | - | chr8.3:66373162-66373181 | MS.gene068338:intron | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | - | chr8.3:66371293-66371312 | MS.gene068338:CDS | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | - | chr8.3:66372207-66372226 | MS.gene068338:intron | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | - | chr8.3:66372673-66372692 | MS.gene068338:intron | 35.0% | |
| GGGAAAGAGAAATGTTATTC+AGG | + | chr8.3:66373616-66373635 | None:intergenic | 35.0% | |
| GGGTTTGCGTTAGAATAATA+TGG | - | chr8.3:66372509-66372528 | MS.gene068338:CDS | 35.0% | |
| TACATGCTTATCTCAGTTGA+TGG | + | chr8.3:66373700-66373719 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | - | chr8.3:66372573-66372592 | MS.gene068338:CDS | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | - | chr8.3:66372675-66372694 | MS.gene068338:intron | 35.0% | |
| TATTGGAATAGAAGGGAAGT+TGG | + | chr8.3:66373593-66373612 | None:intergenic | 35.0% | |
| TCAATGGCTGGATAAATTCT+AGG | + | chr8.3:66371967-66371986 | None:intergenic | 35.0% | |
| TCCCCAAACCAAGAATAATT+TGG | + | chr8.3:66373013-66373032 | None:intergenic | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | - | chr8.3:66372620-66372639 | MS.gene068338:CDS | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | + | chr8.3:66373212-66373231 | None:intergenic | 35.0% | |
| TGAAGCCTCCAAATTATTCT+TGG | - | chr8.3:66373002-66373021 | MS.gene068338:CDS | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | + | chr8.3:66372568-66372587 | None:intergenic | 35.0% | |
| TGCGTAACCTTAACTTAAAC+TGG | + | chr8.3:66372917-66372936 | None:intergenic | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | + | chr8.3:66371605-66371624 | None:intergenic | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | - | chr8.3:66372237-66372256 | MS.gene068338:intron | 35.0% | |
| ! | AATTACCATCGCAAGTATTG+AGG | + | chr8.3:66372412-66372431 | None:intergenic | 35.0% |
| ! | AGTCCCAAATCTTCTTCTTT+TGG | - | chr8.3:66373739-66373758 | MS.gene068338:CDS | 35.0% |
| ! | CATTTTTGATGTGAAACACC+TGG | - | chr8.3:66372708-66372727 | MS.gene068338:intron | 35.0% |
| ! | GTTACTGTTTTGTACTGCAA+GGG | - | chr8.3:66372489-66372508 | MS.gene068338:intron | 35.0% |
| AAGACTACGAAAATGGGAAC+TGG | - | chr8.3:66372626-66372645 | MS.gene068338:CDS | 40.0% | |
| AGAACCGCAATAACAGATGA+AGG | + | chr8.3:66373507-66373526 | None:intergenic | 40.0% | |
| AGAATGAATCAGTCAATGGC+TGG | + | chr8.3:66371979-66371998 | None:intergenic | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | - | chr8.3:66372627-66372646 | MS.gene068338:CDS | 40.0% | |
| ATGAAGGAACTTGTCCTTCT+TGG | + | chr8.3:66373491-66373510 | None:intergenic | 40.0% | |
| CTCTGTGAAGACTACGAAAA+TGG | - | chr8.3:66372619-66372638 | MS.gene068338:CDS | 40.0% | |
| GAAAATTCAGTCTCTCTGTC+AGG | + | chr8.3:66372158-66372177 | None:intergenic | 40.0% | |
| GGAATATTAAAAGGGCAACC+CGG | - | chr8.3:66371670-66371689 | MS.gene068338:intron | 40.0% | |
| GGATTGGGAAGGATAATTAC+TGG | - | chr8.3:66373183-66373202 | MS.gene068338:intron | 40.0% | |
| GGTAACTGGTTAATATGCAG+CGG | + | chr8.3:66373371-66373390 | None:intergenic | 40.0% | |
| GTAACTGGTTAATATGCAGC+GGG | + | chr8.3:66373370-66373389 | None:intergenic | 40.0% | |
| TAGCATCATCCATGATAGCA+CGG | + | chr8.3:66371291-66371310 | None:intergenic | 40.0% | |
| TCTTCTTTCTTTAACTCCCC+CGG | + | chr8.3:66372180-66372199 | None:intergenic | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | + | chr8.3:66373219-66373238 | None:intergenic | 40.0% | |
| TTATTGCGGTTCTGCAAAGT+CGG | - | chr8.3:66373514-66373533 | MS.gene068338:intron | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | - | chr8.3:66371379-66371398 | MS.gene068338:intron | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | - | chr8.3:66372159-66372178 | MS.gene068338:intron | 40.0% |
| ! | AGAAGATTGATGACTCACAC+AGG | + | chr8.3:66371777-66371796 | None:intergenic | 40.0% |
| ! | ATGTGAAGTACCAAGCTATG+AGG | - | chr8.3:66373921-66373940 | MS.gene068338:CDS | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | + | chr8.3:66372621-66372640 | None:intergenic | 40.0% |
| ! | GACAGAGAGACTGAATTTTC+CGG | - | chr8.3:66372158-66372177 | MS.gene068338:intron | 40.0% |
| ! | GATTTGGGACTGTAGTAGAT+TGG | + | chr8.3:66373730-66373749 | None:intergenic | 40.0% |
| ! | GGTTACTGTTTTGTACTGCA+AGG | - | chr8.3:66372488-66372507 | MS.gene068338:intron | 40.0% |
| ! | TGTGAAGTACCAAGCTATGA+GGG | - | chr8.3:66373922-66373941 | MS.gene068338:CDS | 40.0% |
| !! | AAGTATTGAGGTCACAAACC+GGG | + | chr8.3:66372400-66372419 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | + | chr8.3:66372401-66372420 | None:intergenic | 40.0% |
| !! | TTACAAGTCATGGATTGGGA+AGG | - | chr8.3:66373172-66373191 | MS.gene068338:intron | 40.0% |
| AAACCTGGAATCTGGATTGC+TGG | - | chr8.3:66372252-66372271 | MS.gene068338:intron | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | - | chr8.3:66372636-66372655 | MS.gene068338:CDS | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | - | chr8.3:66372643-66372662 | MS.gene068338:CDS | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | + | chr8.3:66372155-66372174 | None:intergenic | 45.0% | |
| ATGGAAACAACTTCTCCACC+CGG | + | chr8.3:66373953-66373972 | None:intergenic | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | + | chr8.3:66372154-66372173 | None:intergenic | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | - | chr8.3:66372581-66372600 | MS.gene068338:CDS | 45.0% | |
| CTATCAGATTGGATGCGCAT+CGG | - | chr8.3:66372102-66372121 | MS.gene068338:intron | 45.0% | |
| GAACATCGATGAACGCGTAT+AGG | + | chr8.3:66371414-66371433 | None:intergenic | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | - | chr8.3:66372768-66372787 | MS.gene068338:intron | 45.0% | |
| TGTGACCTCAATACTTGCGA+TGG | - | chr8.3:66372404-66372423 | MS.gene068338:intron | 45.0% | |
| TTGGGACTGTAGTAGATTGG+TGG | + | chr8.3:66373727-66373746 | None:intergenic | 45.0% | |
| ! | AGAGAGACTGAATTTTCCGG+GGG | - | chr8.3:66372161-66372180 | MS.gene068338:intron | 45.0% |
| ! | CAGAGAGACTGAATTTTCCG+GGG | - | chr8.3:66372160-66372179 | MS.gene068338:intron | 45.0% |
| ! | TTAACAAGGCCACTGACTGT+TGG | + | chr8.3:66372780-66372799 | None:intergenic | 45.0% |
| AAGTACCAAGCTATGAGGGC+AGG | - | chr8.3:66373926-66373945 | MS.gene068338:CDS | 50.0% | |
| CAATGTGCTTCTCCTGCTGT+CGG | + | chr8.3:66371515-66371534 | None:intergenic | 50.0% | |
| CAGCTGCTGAGAGATTCTGA+TGG | + | chr8.3:66373972-66373991 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | + | chr8.3:66371288-66371307 | None:intergenic | 50.0% | |
| CTCCAGTGTGTGTACCAAGA+AGG | - | chr8.3:66373474-66373493 | MS.gene068338:intron | 50.0% | |
| CTTCTTGGTACACACACTGG+AGG | + | chr8.3:66373476-66373495 | None:intergenic | 50.0% | |
| GAGGGCCACTGAAGAATCAA+AGG | + | chr8.3:66372136-66372155 | None:intergenic | 50.0% | |
| GTACACACACTGGAGGCAAA+GGG | + | chr8.3:66373469-66373488 | None:intergenic | 50.0% | |
| GTACCAGCAATCCAGATTCC+AGG | + | chr8.3:66372258-66372277 | None:intergenic | 50.0% | |
| GTCCTTCTTGGTACACACAC+TGG | + | chr8.3:66373479-66373498 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | + | chr8.3:66371339-66371358 | None:intergenic | 50.0% | |
| TCCCAAATGCTTCAGTGCAC+CGG | + | chr8.3:66371692-66371711 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | + | chr8.3:66371361-66371380 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | - | chr8.3:66372221-66372240 | MS.gene068338:intron | 50.0% |
| AAACGAGCTTATGGGGCTGC+TGG | - | chr8.3:66372682-66372701 | MS.gene068338:intron | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | + | chr8.3:66371349-66371368 | None:intergenic | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | - | chr8.3:66371342-66371361 | MS.gene068338:intron | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | - | chr8.3:66371279-66371298 | MS.gene068338:CDS | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | + | chr8.3:66371355-66371374 | None:intergenic | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | + | chr8.3:66372729-66372748 | None:intergenic | 55.0% | |
| CCCAAATGCTTCAGTGCACC+GGG | + | chr8.3:66371691-66371710 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | - | chr8.3:66371353-66371372 | MS.gene068338:intron | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | + | chr8.3:66371358-66371377 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGACAGC+AGG | - | chr8.3:66371500-66371519 | MS.gene068338:intron | 55.0% | |
| CTCCTGCTGTCGGAACTTGT+AGG | + | chr8.3:66371505-66371524 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | - | chr8.3:66372727-66372746 | MS.gene068338:intron | 55.0% | |
| GGTACACACACTGGAGGCAA+AGG | + | chr8.3:66373470-66373489 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | + | chr8.3:66371279-66371298 | None:intergenic | 55.0% | |
| ! | ACCCGGTGCACTGAAGCATT+TGG | - | chr8.3:66371687-66371706 | MS.gene068338:intron | 55.0% |
| ! | CCCGGTGCACTGAAGCATTT+GGG | - | chr8.3:66371688-66371707 | MS.gene068338:intron | 55.0% |
| ! | CGACAGCAGGAGAAGCACAT+TGG | - | chr8.3:66371513-66371532 | MS.gene068338:intron | 55.0% |
| CAAGCTATGAGGGCAGGACC+GGG | - | chr8.3:66373932-66373951 | MS.gene068338:CDS | 60.0% | |
| CCAAGCTATGAGGGCAGGAC+CGG | - | chr8.3:66373931-66373950 | MS.gene068338:CDS | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | - | chr8.3:66372379-66372398 | MS.gene068338:intron | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | - | chr8.3:66371260-66371279 | MS.gene068338:CDS | 60.0% | |
| CCGGTCCTGCCCTCATAGCT+TGG | + | chr8.3:66373934-66373953 | None:intergenic | 65.0% | |
| GCTATGAGGGCAGGACCGGG+TGG | - | chr8.3:66373935-66373954 | MS.gene068338:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66371259 | 66373997 | 66371259 | ID=MS.gene068338 |
| chr8.3 | mRNA | 66371259 | 66373997 | 66371259 | ID=MS.gene068338.t1;Parent=MS.gene068338 |
| chr8.3 | exon | 66373856 | 66373997 | 66373856 | ID=MS.gene068338.t1.exon1;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66373856 | 66373997 | 66373856 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| chr8.3 | exon | 66373722 | 66373766 | 66373722 | ID=MS.gene068338.t1.exon2;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66373722 | 66373766 | 66373722 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| chr8.3 | exon | 66372983 | 66373147 | 66372983 | ID=MS.gene068338.t1.exon3;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66372983 | 66373147 | 66372983 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| chr8.3 | exon | 66372831 | 66372878 | 66372831 | ID=MS.gene068338.t1.exon4;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66372831 | 66372878 | 66372831 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| chr8.3 | exon | 66372508 | 66372678 | 66372508 | ID=MS.gene068338.t1.exon5;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66372508 | 66372678 | 66372508 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| chr8.3 | exon | 66371987 | 66372094 | 66371987 | ID=MS.gene068338.t1.exon6;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66371987 | 66372094 | 66371987 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| chr8.3 | exon | 66371259 | 66371341 | 66371259 | ID=MS.gene068338.t1.exon7;Parent=MS.gene068338.t1 |
| chr8.3 | CDS | 66371259 | 66371341 | 66371259 | ID=cds.MS.gene068338.t1;Parent=MS.gene068338.t1 |
| Gene Sequence |
| Protein sequence |
