Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068452.t1 | XP_024642437.1 | 77.3 | 216 | 13 | 1 | 6 | 185 | 31 | 246 | 2.20E-85 | 325.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068452.t1 | A0A396JKI7 | 76.9 | 216 | 14 | 1 | 6 | 185 | 389 | 604 | 4.5e-85 | 323.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051710 | MS.gene068452 | 0.801648 | 8.16E-49 | -1.69E-46 |
MS.gene059276 | MS.gene068452 | 0.810029 | 1.41E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068452.t1 | MTR_4g029740 | 83.673 | 98 | 16 | 0 | 1 | 98 | 104 | 201 | 1.36e-57 | 182 |
MS.gene068452.t1 | MTR_2g026970 | 82.353 | 68 | 12 | 0 | 118 | 185 | 3 | 70 | 3.29e-33 | 116 |
MS.gene068452.t1 | MTR_3g463980 | 83.871 | 62 | 10 | 0 | 124 | 185 | 73 | 134 | 3.38e-26 | 98.6 |
MS.gene068452.t1 | MTR_3g005890 | 92.000 | 50 | 4 | 0 | 136 | 185 | 18 | 67 | 2.04e-21 | 85.1 |
MS.gene068452.t1 | MTR_1g077860 | 41.228 | 114 | 64 | 2 | 59 | 172 | 2 | 112 | 3.87e-17 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 45 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCAGACAACTTCATCTTCT+TGG | 0.215709 | 6.3:-64819018 | MS.gene068452:CDS |
GTACCCGATACATTGTATTT+TGG | 0.222822 | 6.3:+64819914 | None:intergenic |
AAAATTGGGAAGATAGTAAA+TGG | 0.294207 | 6.3:-64819834 | MS.gene068452:CDS |
AATAATGAACTGTCTGTTAC+AGG | 0.299759 | 6.3:-64820612 | None:intergenic |
TCTATGTCTTGCTCATGTTC+AGG | 0.345935 | 6.3:+64819970 | None:intergenic |
GAAAGGACACATATATGGTT+TGG | 0.371434 | 6.3:-64818973 | MS.gene068452:CDS |
AAAGGACACATATATGGTTT+GGG | 0.378346 | 6.3:-64818972 | MS.gene068452:CDS |
GACAAGAAAGGACACATATA+TGG | 0.391600 | 6.3:-64818978 | MS.gene068452:CDS |
TTCATCTTCTTGGACGTAGT+TGG | 0.429547 | 6.3:-64819008 | MS.gene068452:CDS |
ATGGTCCATTGCACACTTGT+GGG | 0.458304 | 6.3:-64819768 | MS.gene068452:CDS |
CATCTGAATATGAGCATATG+AGG | 0.460761 | 6.3:-64818893 | MS.gene068452:CDS |
TATGGTTTGGGGACAGAGGC+AGG | 0.462107 | 6.3:-64818960 | MS.gene068452:CDS |
GATGGTCCATTGCACACTTG+TGG | 0.470798 | 6.3:-64819769 | MS.gene068452:CDS |
ATCTTCTTGGACGTAGTTGG+AGG | 0.475318 | 6.3:-64819005 | MS.gene068452:CDS |
AGAGAAGACTTATCATCATA+AGG | 0.476174 | 6.3:-64819950 | MS.gene068452:CDS |
TCTTCATCCAGATCATTTGA+CGG | 0.487821 | 6.3:-64818924 | MS.gene068452:CDS |
TGAAATGCCGTCAAATGATC+TGG | 0.505157 | 6.3:+64818917 | None:intergenic |
GGTACCAAAATACAATGTAT+CGG | 0.506345 | 6.3:-64819918 | MS.gene068452:CDS |
TATTGCAGAGGATATATAAG+TGG | 0.513050 | 6.3:-64819996 | MS.gene068452:intron |
GTACCAAAATACAATGTATC+GGG | 0.520464 | 6.3:-64819917 | MS.gene068452:CDS |
ACAATGTATCGGGTACGAAA+AGG | 0.523365 | 6.3:-64819907 | MS.gene068452:CDS |
TATCATCATAAGGCATCTGA+TGG | 0.529469 | 6.3:-64819940 | MS.gene068452:CDS |
GTGTAGGATGAATATGAAAG+AGG | 0.541573 | 6.3:-64819098 | MS.gene068452:intron |
GTTGGAGGAGTCGACAAGAA+AGG | 0.560231 | 6.3:-64818990 | MS.gene068452:CDS |
TGTAGGATGAATATGAAAGA+GGG | 0.565349 | 6.3:-64819097 | MS.gene068452:intron |
TAAAATGTCAGCTGAAAACA+TGG | 0.565653 | 6.3:-64818859 | MS.gene068452:CDS |
ATGAAAGAGGGATCTTTGAA+AGG | 0.571397 | 6.3:-64819085 | MS.gene068452:CDS |
CTGAAAACATGGAACTCTCA+AGG | 0.572053 | 6.3:-64818848 | MS.gene068452:CDS |
CTCATATGCTCATATTCAGA+TGG | 0.573783 | 6.3:+64818894 | None:intergenic |
TTGGGAAGATAGTAAATGGA+AGG | 0.581599 | 6.3:-64819830 | MS.gene068452:CDS |
AAGGAATAGACAAAGGCGAA+TGG | 0.591694 | 6.3:-64819888 | MS.gene068452:CDS |
AGTGTGCAATGGACCATCAG+AGG | 0.611168 | 6.3:+64819774 | None:intergenic |
CAAAATAGAAGATCCTCTGA+TGG | 0.614529 | 6.3:-64819787 | MS.gene068452:CDS |
AGGAACTCACAACAAACAGA+GGG | 0.614725 | 6.3:-64819065 | MS.gene068452:CDS |
ATCATCATAAGGCATCTGAT+GGG | 0.619211 | 6.3:-64819939 | MS.gene068452:CDS |
CATATATGGTTTGGGGACAG+AGG | 0.629154 | 6.3:-64818964 | MS.gene068452:CDS |
ATAGACCCACAAGTGTGCAA+TGG | 0.640134 | 6.3:+64819763 | None:intergenic |
AAGGACACATATATGGTTTG+GGG | 0.644659 | 6.3:-64818971 | MS.gene068452:CDS |
AGATGAAGTTGTCTGACTGA+TGG | 0.649405 | 6.3:+64819024 | None:intergenic |
AACATGGAACTCTCAAGGAG+CGG | 0.660939 | 6.3:-64818843 | MS.gene068452:CDS |
GTACGAAAAGGAATAGACAA+AGG | 0.669707 | 6.3:-64819895 | MS.gene068452:CDS |
AAGGAACTCACAACAAACAG+AGG | 0.682264 | 6.3:-64819066 | MS.gene068452:CDS |
AGATAGTAAATGGAAGGACA+AGG | 0.688548 | 6.3:-64819824 | MS.gene068452:CDS |
GAACTCACAACAAACAGAGG+GGG | 0.692900 | 6.3:-64819063 | MS.gene068452:CDS |
GGAACTCACAACAAACAGAG+GGG | 0.755288 | 6.3:-64819064 | MS.gene068452:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACAATGTAAATAATAT+AGG | + | chr6.3:64819432-64819451 | None:intergenic | 10.0% |
!! | AAATAAATAGATTAGTATTA+TGG | + | chr6.3:64819786-64819805 | None:intergenic | 10.0% |
!! | ATGCATAACATTAAAAACTA+TGG | + | chr6.3:64820203-64820222 | None:intergenic | 20.0% |
!! | GTAAATAATATAGGTTAAAC+CGG | + | chr6.3:64819423-64819442 | None:intergenic | 20.0% |
!! | TGAAAAATTGGAACAAAATT+GGG | - | chr6.3:64819599-64819618 | MS.gene068452:intron | 20.0% |
!!! | AAGTTTTCTAATGTAGTTAT+TGG | - | chr6.3:64819244-64819263 | MS.gene068452:intron | 20.0% |
!!! | AGTTTTCTAATGTAGTTATT+GGG | - | chr6.3:64819245-64819264 | MS.gene068452:intron | 20.0% |
!!! | TTTTATGTTTATTTGACAGA+AGG | + | chr6.3:64819964-64819983 | None:intergenic | 20.0% |
! | AAAACAATTATAGCACATGA+TGG | + | chr6.3:64820135-64820154 | None:intergenic | 25.0% |
! | AAAATTGGGAAGATAGTAAA+TGG | - | chr6.3:64819613-64819632 | MS.gene068452:intron | 25.0% |
! | AAGTCAGTTGAACAATTAAA+AGG | + | chr6.3:64819289-64819308 | None:intergenic | 25.0% |
! | AGCAACAAAGAATGATAAAA+AGG | + | chr6.3:64818929-64818948 | None:intergenic | 25.0% |
! | AGTCAGTTGAACAATTAAAA+GGG | + | chr6.3:64819288-64819307 | None:intergenic | 25.0% |
! | ATAAAGACACACAAAATGAA+AGG | - | chr6.3:64819861-64819880 | MS.gene068452:CDS | 25.0% |
! | CAACAAAGAATGATAAAAAG+GGG | + | chr6.3:64818927-64818946 | None:intergenic | 25.0% |
! | CTAGAATTAGTTATATCCTT+TGG | - | chr6.3:64820002-64820021 | MS.gene068452:intron | 25.0% |
! | GCAACAAAGAATGATAAAAA+GGG | + | chr6.3:64818928-64818947 | None:intergenic | 25.0% |
! | GTGAAAAATTGGAACAAAAT+TGG | - | chr6.3:64819598-64819617 | MS.gene068452:intron | 25.0% |
! | TTTATTCTGTTAAAGTCAGT+TGG | + | chr6.3:64819321-64819340 | None:intergenic | 25.0% |
!! | TCATGTGCTATAATTGTTTT+TGG | - | chr6.3:64820135-64820154 | MS.gene068452:intron | 25.0% |
!!! | TTACATTGTTTTTATTGCAG+AGG | - | chr6.3:64819439-64819458 | MS.gene068452:intron | 25.0% |
AAAGGACACATATATGGTTT+GGG | - | chr6.3:64820475-64820494 | MS.gene068452:intron | 30.0% | |
AGAGAAGACTTATCATCATA+AGG | - | chr6.3:64819497-64819516 | MS.gene068452:intron | 30.0% | |
GAATTAGTTATATCCTTTGG+TGG | - | chr6.3:64820005-64820024 | MS.gene068452:intron | 30.0% | |
GGTACCAAAATACAATGTAT+CGG | - | chr6.3:64819529-64819548 | MS.gene068452:intron | 30.0% | |
GTACCAAAATACAATGTATC+GGG | - | chr6.3:64819530-64819549 | MS.gene068452:intron | 30.0% | |
GTCTTATGTAAATGCAAATG+TGG | - | chr6.3:64819017-64819036 | MS.gene068452:CDS | 30.0% | |
TAAAATGTCAGCTGAAAACA+TGG | - | chr6.3:64820588-64820607 | MS.gene068452:intron | 30.0% | |
TATTGCAGAGGATATATAAG+TGG | - | chr6.3:64819451-64819470 | MS.gene068452:intron | 30.0% | |
TGATCTTATGTTTCTTCACT+TGG | - | chr6.3:64820262-64820281 | MS.gene068452:intron | 30.0% | |
TGTAGGATGAATATGAAAGA+GGG | - | chr6.3:64820350-64820369 | MS.gene068452:intron | 30.0% | |
TGTTCAATTGCGTGAAAAAT+TGG | - | chr6.3:64819587-64819606 | MS.gene068452:intron | 30.0% | |
! | AATTTTTCACGCAATTGAAC+AGG | + | chr6.3:64819588-64819607 | None:intergenic | 30.0% |
! | ATTTTTCACGCAATTGAACA+GGG | + | chr6.3:64819587-64819606 | None:intergenic | 30.0% |
! | TATGCTATGATAATGTTGTC+TGG | - | chr6.3:64819127-64819146 | MS.gene068452:intron | 30.0% |
!!! | CTTTTAAAATGCTCGATTGT+TGG | + | chr6.3:64819711-64819730 | None:intergenic | 30.0% |
AAAAACTATGGCACAAAAGC+AGG | + | chr6.3:64820191-64820210 | None:intergenic | 35.0% | |
AAATGTGGCATCTAATTGTG+TGG | - | chr6.3:64819032-64819051 | MS.gene068452:CDS | 35.0% | |
AAGACGAACTCTAATTGTGT+AGG | - | chr6.3:64820333-64820352 | MS.gene068452:intron | 35.0% | |
AAGGACACATATATGGTTTG+GGG | - | chr6.3:64820476-64820495 | MS.gene068452:intron | 35.0% | |
AGATAGTAAATGGAAGGACA+AGG | - | chr6.3:64819623-64819642 | MS.gene068452:intron | 35.0% | |
ATGAAAGAGGGATCTTTGAA+AGG | - | chr6.3:64820362-64820381 | MS.gene068452:intron | 35.0% | |
ATGTTTATTTGACAGAAGGC+TGG | + | chr6.3:64819960-64819979 | None:intergenic | 35.0% | |
CAAAATAGAAGATCCTCTGA+TGG | - | chr6.3:64819660-64819679 | MS.gene068452:intron | 35.0% | |
CATCTGAATATGAGCATATG+AGG | - | chr6.3:64820554-64820573 | MS.gene068452:intron | 35.0% | |
CTCATATGCTCATATTCAGA+TGG | + | chr6.3:64820556-64820575 | None:intergenic | 35.0% | |
GAAAGGACACATATATGGTT+TGG | - | chr6.3:64820474-64820493 | MS.gene068452:intron | 35.0% | |
GAAAGGTGATCCATCAAATT+GGG | - | chr6.3:64819878-64819897 | MS.gene068452:CDS | 35.0% | |
GACAAGAAAGGACACATATA+TGG | - | chr6.3:64820469-64820488 | MS.gene068452:intron | 35.0% | |
GTACGAAAAGGAATAGACAA+AGG | - | chr6.3:64819552-64819571 | MS.gene068452:intron | 35.0% | |
GTGTAGGATGAATATGAAAG+AGG | - | chr6.3:64820349-64820368 | MS.gene068452:intron | 35.0% | |
TACAATGATCCTGCAGATTA+AGG | + | chr6.3:64819203-64819222 | None:intergenic | 35.0% | |
TCTTCATCCAGATCATTTGA+CGG | - | chr6.3:64820523-64820542 | MS.gene068452:intron | 35.0% | |
TGAAAGGTGATCCATCAAAT+TGG | - | chr6.3:64819877-64819896 | MS.gene068452:CDS | 35.0% | |
TTGGGAAGATAGTAAATGGA+AGG | - | chr6.3:64819617-64819636 | MS.gene068452:intron | 35.0% | |
TTTGTTCATCCTTAATCTGC+AGG | - | chr6.3:64819191-64819210 | MS.gene068452:intron | 35.0% | |
! | ATCATCATAAGGCATCTGAT+GGG | - | chr6.3:64819508-64819527 | MS.gene068452:intron | 35.0% |
! | GTACCCGATACATTGTATTT+TGG | + | chr6.3:64819536-64819555 | None:intergenic | 35.0% |
! | TATCATCATAAGGCATCTGA+TGG | - | chr6.3:64819507-64819526 | MS.gene068452:intron | 35.0% |
AAAGCTCCTAGTTTGATGTC+CGG | - | chr6.3:64819401-64819420 | MS.gene068452:intron | 40.0% | |
AAGGAACTCACAACAAACAG+AGG | - | chr6.3:64820381-64820400 | MS.gene068452:intron | 40.0% | |
AAGGAATAGACAAAGGCGAA+TGG | - | chr6.3:64819559-64819578 | MS.gene068452:intron | 40.0% | |
ACAATGTATCGGGTACGAAA+AGG | - | chr6.3:64819540-64819559 | MS.gene068452:intron | 40.0% | |
AGATGAAGTTGTCTGACTGA+TGG | + | chr6.3:64820426-64820445 | None:intergenic | 40.0% | |
AGCATGCATCAATACACATG+AGG | + | chr6.3:64820095-64820114 | None:intergenic | 40.0% | |
AGGAACTCACAACAAACAGA+GGG | - | chr6.3:64820382-64820401 | MS.gene068452:intron | 40.0% | |
CAAACATGATTCCAAGCTAC+TGG | - | chr6.3:64819830-64819849 | MS.gene068452:CDS | 40.0% | |
CTCCAAATCTCAAATGGTTG+CGG | - | chr6.3:64819905-64819924 | MS.gene068452:CDS | 40.0% | |
CTGAAAACATGGAACTCTCA+AGG | - | chr6.3:64820599-64820618 | MS.gene068452:intron | 40.0% | |
GGTATCCTCCAAATCTCAAA+TGG | - | chr6.3:64819899-64819918 | MS.gene068452:CDS | 40.0% | |
GGTTTACCAGATCTCATATC+AGG | + | chr6.3:64818970-64818989 | None:intergenic | 40.0% | |
GTCAGACAACTTCATCTTCT+TGG | - | chr6.3:64820429-64820448 | MS.gene068452:intron | 40.0% | |
GTTAAACCGGACATCAAACT+AGG | + | chr6.3:64819410-64819429 | None:intergenic | 40.0% | |
TATATACACCTCCAGTAGCT+TGG | + | chr6.3:64819844-64819863 | None:intergenic | 40.0% | |
TCTATGTCTTGCTCATGTTC+AGG | + | chr6.3:64819480-64819499 | None:intergenic | 40.0% | |
TCTCTACCTGATATGAGATC+TGG | - | chr6.3:64818961-64818980 | MS.gene068452:CDS | 40.0% | |
TGAAATGCCGTCAAATGATC+TGG | + | chr6.3:64820533-64820552 | None:intergenic | 40.0% | |
TGGTGGAAAGTCAAGGTAAT+TGG | - | chr6.3:64820039-64820058 | MS.gene068452:intron | 40.0% | |
TTCATCTTCTTGGACGTAGT+TGG | - | chr6.3:64820439-64820458 | MS.gene068452:intron | 40.0% | |
TTGGAGGATACCCAATTTGA+TGG | + | chr6.3:64819891-64819910 | None:intergenic | 40.0% | |
! | TACCGCAACCATTTGAGATT+TGG | + | chr6.3:64819910-64819929 | None:intergenic | 40.0% |
!! | GTTATATCCTTTGGTGGACT+TGG | - | chr6.3:64820011-64820030 | MS.gene068452:intron | 40.0% |
AACATGGAACTCTCAAGGAG+CGG | - | chr6.3:64820604-64820623 | MS.gene068452:intron | 45.0% | |
ACATGATTCCAAGCTACTGG+AGG | - | chr6.3:64819833-64819852 | MS.gene068452:CDS | 45.0% | |
ATAGACCCACAAGTGTGCAA+TGG | + | chr6.3:64819687-64819706 | None:intergenic | 45.0% | |
ATCTTCTTGGACGTAGTTGG+AGG | - | chr6.3:64820442-64820461 | MS.gene068452:intron | 45.0% | |
ATGGTCCATTGCACACTTGT+GGG | - | chr6.3:64819679-64819698 | MS.gene068452:intron | 45.0% | |
GAACTCACAACAAACAGAGG+GGG | - | chr6.3:64820384-64820403 | MS.gene068452:intron | 45.0% | |
GGAACTCACAACAAACAGAG+GGG | - | chr6.3:64820383-64820402 | MS.gene068452:intron | 45.0% | |
TCAAACTAGGAGCTTTGCTC+TGG | + | chr6.3:64819397-64819416 | None:intergenic | 45.0% | |
TTATTGGGTCCAACTGTCGT+CGG | - | chr6.3:64819260-64819279 | MS.gene068452:intron | 45.0% | |
! | CATATATGGTTTGGGGACAG+AGG | - | chr6.3:64820483-64820502 | MS.gene068452:intron | 45.0% |
! | CGCAACCATTTGAGATTTGG+AGG | + | chr6.3:64819907-64819926 | None:intergenic | 45.0% |
AGTGTGCAATGGACCATCAG+AGG | + | chr6.3:64819676-64819695 | None:intergenic | 50.0% | |
CAGCATACCAAGTCCACCAA+AGG | + | chr6.3:64820021-64820040 | None:intergenic | 50.0% | |
GATGGTCCATTGCACACTTG+TGG | - | chr6.3:64819678-64819697 | MS.gene068452:intron | 50.0% | |
GGTATGCTGGTGGAAAGTCA+AGG | - | chr6.3:64820032-64820051 | MS.gene068452:intron | 50.0% | |
GTTGGAGGAGTCGACAAGAA+AGG | - | chr6.3:64820457-64820476 | MS.gene068452:intron | 50.0% | |
TGTTGTCTGGCATGTGCGAA+TGG | - | chr6.3:64819140-64819159 | MS.gene068452:intron | 50.0% | |
! | TGCACACAAGAGTGCAGTCA+TGG | + | chr6.3:64818991-64819010 | None:intergenic | 50.0% |
!! | AAAAGGGTACCGACGACAGT+TGG | + | chr6.3:64819272-64819291 | None:intergenic | 50.0% |
!! | CTTTGGTGGACTTGGTATGC+TGG | - | chr6.3:64820019-64820038 | MS.gene068452:intron | 50.0% |
! | TATGGTTTGGGGACAGAGGC+AGG | - | chr6.3:64820487-64820506 | MS.gene068452:intron | 55.0% |
!! | TGGTGGACTTGGTATGCTGG+TGG | - | chr6.3:64820022-64820041 | MS.gene068452:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 64818839 | 64820630 | 64818839 | ID=MS.gene068452 |
chr6.3 | mRNA | 64818839 | 64820630 | 64818839 | ID=MS.gene068452.t1;Parent=MS.gene068452 |
chr6.3 | exon | 64820613 | 64820630 | 64820613 | ID=MS.gene068452.t1.exon1;Parent=MS.gene068452.t1 |
chr6.3 | CDS | 64820613 | 64820630 | 64820613 | ID=cds.MS.gene068452.t1;Parent=MS.gene068452.t1 |
chr6.3 | exon | 64819735 | 64820010 | 64819735 | ID=MS.gene068452.t1.exon2;Parent=MS.gene068452.t1 |
chr6.3 | CDS | 64819735 | 64820010 | 64819735 | ID=cds.MS.gene068452.t1;Parent=MS.gene068452.t1 |
chr6.3 | exon | 64818839 | 64819114 | 64818839 | ID=MS.gene068452.t1.exon3;Parent=MS.gene068452.t1 |
chr6.3 | CDS | 64818839 | 64819114 | 64818839 | ID=cds.MS.gene068452.t1;Parent=MS.gene068452.t1 |
Gene Sequence |
Protein sequence |