AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068516

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGCAGGCGAAATATTTC+TGG 0.184888 1.1:-50366637 MS.gene068516:intron
CTGATTCCTGTTATGGTATA+TGG 0.204303 1.1:-50367294 MS.gene068516:CDS
TAGTATCTGCCGGGCTTCTT+AGG 0.257711 1.1:-50366481 MS.gene068516:CDS
TCCATTTGGACTAAGAAATT+AGG 0.275286 1.1:-50366157 MS.gene068516:CDS
AATATTTCTGGCCAAGAATT+CGG 0.299340 1.1:-50366625 MS.gene068516:CDS
CTGCACCTCTTTAAGATGTT+TGG 0.299842 1.1:+50365917 None:intergenic
ATATTTCTGGCCAAGAATTC+GGG 0.311304 1.1:-50366624 MS.gene068516:CDS
GCCTAATTTCTTAGTCCAAA+TGG 0.376041 1.1:+50366156 None:intergenic
CAGGGGATGCAGAGTCCATT+TGG 0.382960 1.1:-50366171 MS.gene068516:CDS
GATCCCATCGTTGCAATATC+TGG 0.389667 1.1:-50367324 MS.gene068516:CDS
GCTTACCCATATACCATAAC+AGG 0.391501 1.1:+50367288 None:intergenic
GACTCTGCATCCCCTGCAGC+AGG 0.410293 1.1:+50366178 None:intergenic
AAGCTGGTGCTCCCTGCTGC+AGG 0.415428 1.1:-50366190 MS.gene068516:CDS
TCGTGACCTGATTCCTGTTA+TGG 0.418037 1.1:-50367301 MS.gene068516:CDS
AGTTCTATTGTAGTATCTGC+CGG 0.436363 1.1:-50366491 MS.gene068516:CDS
TTCTCTAAATGTAGAAAAGC+TGG 0.453959 1.1:-50366206 MS.gene068516:CDS
CATATACCATAACAGGAATC+AGG 0.457604 1.1:+50367295 None:intergenic
TCACAAGATGAGTGAAGATC+AGG 0.472645 1.1:-50366131 MS.gene068516:intron
TGATTCCTGTTATGGTATAT+GGG 0.477661 1.1:-50367293 MS.gene068516:intron
GCTCTCTACTTGTAGCTACC+AGG 0.479856 1.1:+50366429 None:intergenic
AACATCAGTGCTGGAAAAGA+TGG 0.491255 1.1:-50365877 MS.gene068516:CDS
CTTCAACAAAACATCAGTGC+TGG 0.496640 1.1:-50365886 MS.gene068516:CDS
TGCCACTTAAAATTCTCCAT+TGG 0.501723 1.1:+50368192 None:intergenic
CAATATTGCTGAGCTTCCCC+TGG 0.530864 1.1:-50366447 MS.gene068516:CDS
CGCTGTTCTCTTGCATAGAG+AGG 0.535338 1.1:-50366237 MS.gene068516:CDS
AGCTGGTGCTCCCTGCTGCA+GGG 0.540416 1.1:-50366189 MS.gene068516:CDS
GTTAACCAAACATCTTAAAG+AGG 0.550069 1.1:-50365922 MS.gene068516:CDS
GTTCTATTGTAGTATCTGCC+GGG 0.553325 1.1:-50366490 MS.gene068516:CDS
GCTGGTGCTCCCTGCTGCAG+GGG 0.553471 1.1:-50366188 MS.gene068516:CDS
GAGACATGAATGATATCCAA+TGG 0.570210 1.1:-50368208 MS.gene068516:CDS
AGTGCTGGAAAAGATGGTGC+AGG 0.576023 1.1:-50365871 MS.gene068516:CDS
CTCTCTACTTGTAGCTACCA+GGG 0.577610 1.1:+50366430 None:intergenic
CGACCAGATATTGCAACGAT+GGG 0.591304 1.1:+50367321 None:intergenic
ACGACCAGATATTGCAACGA+TGG 0.617395 1.1:+50367320 None:intergenic
TATTTCTGGCCAAGAATTCG+GGG 0.624320 1.1:-50366623 MS.gene068516:CDS
ACTCTGCATCCCCTGCAGCA+GGG 0.632470 1.1:+50366179 None:intergenic
GCAGCAGCTCGTGAAAGTAA+CGG 0.635905 1.1:+50368146 None:intergenic
GCTACAAGTAGAGAGCATCA+AGG 0.644661 1.1:-50366422 MS.gene068516:CDS
GGGGAAGCTCAGCAATATTG+CGG 0.647399 1.1:+50366450 None:intergenic
ATTTCTGGCCAAGAATTCGG+GGG 0.674461 1.1:-50366622 MS.gene068516:CDS
TCTCTACTTGTAGCTACCAG+GGG 0.693635 1.1:+50366431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAACAATAATATATAA+AGG + chr1.1:50368001-50368020 None:intergenic 10.0%
!!! AAAGTCACTTTATATTAAAT+AGG + chr1.1:50366175-50366194 None:intergenic 15.0%
!!! AAGTCACTTTATATTAAATA+GGG + chr1.1:50366174-50366193 None:intergenic 15.0%
!!! ACAATTTTTGTTTTTTGTTT+TGG - chr1.1:50368117-50368136 MS.gene068516:intron 15.0%
!!! ACTACAATTTATTTTAATGT+TGG - chr1.1:50366801-50366820 MS.gene068516:intron 15.0%
!! AATTACTCATATTGAAAAAG+TGG - chr1.1:50367693-50367712 MS.gene068516:intron 20.0%
!! ATCACAAGATTAAATGTTTA+AGG - chr1.1:50367329-50367348 MS.gene068516:CDS 20.0%
!! GAAAAATAAATCTCAAAAGT+GGG + chr1.1:50366091-50366110 None:intergenic 20.0%
!! TAATATTTGTGTCAAAAATC+TGG - chr1.1:50366017-50366036 MS.gene068516:intron 20.0%
!! TGTAAAGAATCTTATATCAA+GGG + chr1.1:50366113-50366132 None:intergenic 20.0%
!! TTGGTAAAATATATCATCTT+TGG + chr1.1:50367759-50367778 None:intergenic 20.0%
!! TTGTAAAGAATCTTATATCA+AGG + chr1.1:50366114-50366133 None:intergenic 20.0%
!!! AGTCACTTTATATTAAATAG+GGG + chr1.1:50366173-50366192 None:intergenic 20.0%
!!! ATATTTTTTATTACGAGTCT+TGG - chr1.1:50367156-50367175 MS.gene068516:intron 20.0%
! AAATAAAGATAGAATGCTAG+AGG + chr1.1:50366671-50366690 None:intergenic 25.0%
! ACCATCTTATAATTGAACTT+GGG - chr1.1:50366280-50366299 MS.gene068516:intron 25.0%
! ACTACTTAAGCTATATTTCT+AGG - chr1.1:50366362-50366381 MS.gene068516:intron 25.0%
! AGTTCATCTTCTAAATTTAC+TGG - chr1.1:50367960-50367979 MS.gene068516:intron 25.0%
! ATGCATATTTATCACAATTC+AGG + chr1.1:50366971-50366990 None:intergenic 25.0%
! CACTATATTATCAGAAAACA+TGG + chr1.1:50367397-50367416 None:intergenic 25.0%
! GGAAAAATAAATCTCAAAAG+TGG + chr1.1:50366092-50366111 None:intergenic 25.0%
! TACCATCTTATAATTGAACT+TGG - chr1.1:50366279-50366298 MS.gene068516:intron 25.0%
! TAGAGTTTATTAGGTTTGAA+CGG + chr1.1:50366427-50366446 None:intergenic 25.0%
! TAGCTTAAGTAGAGTTTATT+AGG + chr1.1:50366436-50366455 None:intergenic 25.0%
! TCTACTTAAGCTATATTTCT+AGG - chr1.1:50366443-50366462 MS.gene068516:CDS 25.0%
! TTATTGTTATCTTACTGACA+TGG - chr1.1:50368008-50368027 MS.gene068516:intron 25.0%
!! GCTCAATTAAATGTATTTTG+TGG - chr1.1:50367361-50367380 MS.gene068516:intron 25.0%
!! TTCCTGATAGTTCTTAATTT+TGG - chr1.1:50367520-50367539 MS.gene068516:intron 25.0%
!!! ATTTTAATGTTGGTTGATAG+TGG - chr1.1:50366811-50366830 MS.gene068516:intron 25.0%
!!! TACTGACTTTTCCTTTAATT+GGG - chr1.1:50366549-50366568 MS.gene068516:intron 25.0%
!!! TTAGGTTGTAGAATAGTTTT+TGG - chr1.1:50366602-50366621 MS.gene068516:CDS 25.0%
ATCTCAGTAAACCCAATTAA+AGG + chr1.1:50366563-50366582 None:intergenic 30.0%
ATGATGCATTTGTCAACAAT+GGG - chr1.1:50367208-50367227 MS.gene068516:intron 30.0%
ATGTTAATAGAGCTTATCGT+TGG + chr1.1:50367778-50367797 None:intergenic 30.0%
CCATATACAGCAAAAATTCA+AGG + chr1.1:50365987-50366006 None:intergenic 30.0%
GACCAAAATTAAGAACTATC+AGG + chr1.1:50367525-50367544 None:intergenic 30.0%
GTTAACCAAACATCTTAAAG+AGG - chr1.1:50368143-50368162 MS.gene068516:CDS 30.0%
TCCATTTGGACTAAGAAATT+AGG - chr1.1:50367908-50367927 MS.gene068516:intron 30.0%
TCCCAAGTTCAATTATAAGA+TGG + chr1.1:50366284-50366303 None:intergenic 30.0%
TGATTCCTGTTATGGTATAT+GGG - chr1.1:50366772-50366791 MS.gene068516:intron 30.0%
TTAATTGGGTTTACTGAGAT+GGG - chr1.1:50366563-50366582 MS.gene068516:intron 30.0%
TTCTCTAAATGTAGAAAAGC+TGG - chr1.1:50367859-50367878 MS.gene068516:intron 30.0%
TTCTTAACTAGTGTCCTTAT+GGG + chr1.1:50367282-50367301 None:intergenic 30.0%
TTTAATTGGGTTTACTGAGA+TGG - chr1.1:50366562-50366581 MS.gene068516:intron 30.0%
TTTCTTAACTAGTGTCCTTA+TGG + chr1.1:50367283-50367302 None:intergenic 30.0%
! ATCCAATGGAGAATTTTAAG+TGG - chr1.1:50365871-50365890 MS.gene068516:CDS 30.0%
!! AATATTTCTGGCCAAGAATT+CGG - chr1.1:50367440-50367459 MS.gene068516:intron 30.0%
!! CAAAAGTGGGTTTTATAGTA+AGG + chr1.1:50366078-50366097 None:intergenic 30.0%
!! CCTTGAATTTTTGCTGTATA+TGG - chr1.1:50365984-50366003 MS.gene068516:intron 30.0%
!! CTTTAAGATGTTTGGTTAAC+TGG + chr1.1:50368143-50368162 None:intergenic 30.0%
!! GTGTATTTTGAATTTTGTGC+AGG - chr1.1:50367414-50367433 MS.gene068516:intron 30.0%
!!! ATTTTTCGAGTGAGTGTTTA+TGG - chr1.1:50365943-50365962 MS.gene068516:intron 30.0%
!!! CGTTTTAATTGTGAAGTATG+TGG - chr1.1:50367478-50367497 MS.gene068516:intron 30.0%
!!! CTACTGACTTTTCCTTTAAT+TGG - chr1.1:50366548-50366567 MS.gene068516:intron 30.0%
!!! TGTCAAAAATCTGGTTTTCA+TGG - chr1.1:50366026-50366045 MS.gene068516:intron 30.0%
AGTTCTATTGTAGTATCTGC+CGG - chr1.1:50367574-50367593 MS.gene068516:intron 35.0%
ATTGATTATGTAGAGGAGAG+GGG + chr1.1:50367016-50367035 None:intergenic 35.0%
CATATACCATAACAGGAATC+AGG + chr1.1:50366773-50366792 None:intergenic 35.0%
CTGATTCCTGTTATGGTATA+TGG - chr1.1:50366771-50366790 MS.gene068516:intron 35.0%
GAAAAAATTCCTGTGAACGA+TGG + chr1.1:50367119-50367138 None:intergenic 35.0%
GATGATGCATTTGTCAACAA+TGG - chr1.1:50367207-50367226 MS.gene068516:intron 35.0%
GCCTAATTTCTTAGTCCAAA+TGG + chr1.1:50367912-50367931 None:intergenic 35.0%
GCTTGAAAATAACCCTGAAA+GGG + chr1.1:50367809-50367828 None:intergenic 35.0%
GTGTACAATAACTAACCACT+GGG + chr1.1:50366878-50366897 None:intergenic 35.0%
TAATTGGGTTTACTGAGATG+GGG - chr1.1:50366564-50366583 MS.gene068516:intron 35.0%
TCTACATAATCAATGGTCGA+TGG - chr1.1:50367022-50367041 MS.gene068516:intron 35.0%
TGTCTTCTAAATCCATCGTT+GGG + chr1.1:50366253-50366272 None:intergenic 35.0%
TGTGTACAATAACTAACCAC+TGG + chr1.1:50366879-50366898 None:intergenic 35.0%
TTAGCTTCAACATATGGCAT+TGG + chr1.1:50366947-50366966 None:intergenic 35.0%
TTTCTTCCAATTCTGAACTC+AGG + chr1.1:50368059-50368078 None:intergenic 35.0%
! ATCGACCATTGATTATGTAG+AGG + chr1.1:50367023-50367042 None:intergenic 35.0%
! CAAGATCATTTTGCAAAACG+AGG - chr1.1:50366319-50366338 MS.gene068516:intron 35.0%
! CATTGATTATGTAGAGGAGA+GGG + chr1.1:50367017-50367036 None:intergenic 35.0%
! TCAGGTTTAGCTTCAACATA+TGG + chr1.1:50366953-50366972 None:intergenic 35.0%
! TGCCACTTAAAATTCTCCAT+TGG + chr1.1:50365876-50365895 None:intergenic 35.0%
!! ATATTTCTGGCCAAGAATTC+GGG - chr1.1:50367441-50367460 MS.gene068516:intron 35.0%
!! ATTGCGTAAGAGCATGTTTT+AGG - chr1.1:50367071-50367090 MS.gene068516:intron 35.0%
!! CACTGATGTTTTGTTGAAGA+GGG + chr1.1:50368178-50368197 None:intergenic 35.0%
!! TTGCGTAAGAGCATGTTTTA+GGG - chr1.1:50367072-50367091 MS.gene068516:intron 35.0%
AATACATTCCCCCGAATTCT+TGG + chr1.1:50367454-50367473 None:intergenic 40.0%
AATTGGGTTTACTGAGATGG+GGG - chr1.1:50366565-50366584 MS.gene068516:intron 40.0%
AGTGTTAACTGTGGAGTCTT+TGG + chr1.1:50366513-50366532 None:intergenic 40.0%
CCTCTCCTCTACATAATCAA+TGG - chr1.1:50367015-50367034 MS.gene068516:intron 40.0%
CGATGGAAAACCTAGTTGAT+AGG - chr1.1:50367039-50367058 MS.gene068516:intron 40.0%
CGCTTGAAAATAACCCTGAA+AGG + chr1.1:50367810-50367829 None:intergenic 40.0%
CTTCAACAAAACATCAGTGC+TGG - chr1.1:50368179-50368198 MS.gene068516:CDS 40.0%
GACATGGCATACTAAGAGAA+TGG - chr1.1:50368024-50368043 MS.gene068516:intron 40.0%
GCTTACCCATATACCATAAC+AGG + chr1.1:50366780-50366799 None:intergenic 40.0%
GGAAAAGTCAGTAGTTGCTT+TGG + chr1.1:50366542-50366561 None:intergenic 40.0%
GGAAAGAAGGTTGTATAGAG+AGG + chr1.1:50366840-50366859 None:intergenic 40.0%
GTGTCTTCTAAATCCATCGT+TGG + chr1.1:50366254-50366273 None:intergenic 40.0%
GTGTTAACTGTGGAGTCTTT+GGG + chr1.1:50366512-50366531 None:intergenic 40.0%
GTTCTATTGTAGTATCTGCC+GGG - chr1.1:50367575-50367594 MS.gene068516:intron 40.0%
TCACAAGATGAGTGAAGATC+AGG - chr1.1:50367934-50367953 MS.gene068516:intron 40.0%
TGTTGACCTGAGTTCAGAAT+TGG - chr1.1:50368050-50368069 MS.gene068516:intron 40.0%
TTCTACATACCCTTTCACAC+CGG - chr1.1:50366194-50366213 MS.gene068516:CDS 40.0%
TTGTGCAGGCGAAATATTTC+TGG - chr1.1:50367428-50367447 MS.gene068516:intron 40.0%
! AACATCAGTGCTGGAAAAGA+TGG - chr1.1:50368188-50368207 MS.gene068516:CDS 40.0%
! AACATGCGATTTTCCCTTTC+AGG - chr1.1:50367793-50367812 MS.gene068516:intron 40.0%
! ACATGCGATTTTCCCTTTCA+GGG - chr1.1:50367794-50367813 MS.gene068516:intron 40.0%
! ACTGCATTTTGTTCATGCTC+TGG - chr1.1:50366695-50366714 MS.gene068516:intron 40.0%
! CCATTGATTATGTAGAGGAG+AGG + chr1.1:50367018-50367037 None:intergenic 40.0%
!! CTGCACCTCTTTAAGATGTT+TGG + chr1.1:50368151-50368170 None:intergenic 40.0%
!! GCACTGATGTTTTGTTGAAG+AGG + chr1.1:50368179-50368198 None:intergenic 40.0%
!! TATTTCTGGCCAAGAATTCG+GGG - chr1.1:50367442-50367461 MS.gene068516:intron 40.0%
ACACCCCCTTACACAAAATG+AGG - chr1.1:50366400-50366419 MS.gene068516:intron 45.0%
ACGACCAGATATTGCAACGA+TGG + chr1.1:50366748-50366767 None:intergenic 45.0%
AGGGGATGAGAGAGTAAAAG+AGG + chr1.1:50366998-50367017 None:intergenic 45.0%
CACCCCCTTACACAAAATGA+GGG - chr1.1:50366401-50366420 MS.gene068516:intron 45.0%
CACTTCTATCCATCGTTCAC+AGG - chr1.1:50367107-50367126 MS.gene068516:intron 45.0%
CGACCAGATATTGCAACGAT+GGG + chr1.1:50366747-50366766 None:intergenic 45.0%
CTCTCTACTTGTAGCTACCA+GGG + chr1.1:50367638-50367657 None:intergenic 45.0%
CTGTGAACGATGGATAGAAG+TGG + chr1.1:50367109-50367128 None:intergenic 45.0%
GATCCCATCGTTGCAATATC+TGG - chr1.1:50366741-50366760 MS.gene068516:intron 45.0%
GCCAAAAATCCTAAGAAGCC+CGG + chr1.1:50367596-50367615 None:intergenic 45.0%
GGAACAGAGAATATCGTGCA+AGG + chr1.1:50366057-50366076 None:intergenic 45.0%
GGGGATTCTCTTGCTCATTT+AGG - chr1.1:50366584-50366603 MS.gene068516:intron 45.0%
TCGTGACCTGATTCCTGTTA+TGG - chr1.1:50366764-50366783 MS.gene068516:intron 45.0%
TCTACATACCCTTTCACACC+GGG - chr1.1:50366195-50366214 MS.gene068516:CDS 45.0%
TCTCTACTTGTAGCTACCAG+GGG + chr1.1:50367637-50367656 None:intergenic 45.0%
TGGAGCATGGAAAATGTTGG+TGG - chr1.1:50366227-50366246 MS.gene068516:CDS 45.0%
TGGCAAAGCAGTGTTAACTG+TGG + chr1.1:50366522-50366541 None:intergenic 45.0%
TGTCAGACAGCCTATCAACT+AGG + chr1.1:50367052-50367071 None:intergenic 45.0%
! AACGGCCCTCATTTTGTGTA+AGG + chr1.1:50366409-50366428 None:intergenic 45.0%
! ACCAACATTTTCCATGCTCC+AGG + chr1.1:50366228-50366247 None:intergenic 45.0%
! ACGGCCCTCATTTTGTGTAA+GGG + chr1.1:50366408-50366427 None:intergenic 45.0%
! ACTAGTGTCCTTATGGGCTA+TGG + chr1.1:50367276-50367295 None:intergenic 45.0%
! ACTGAAAGCACGAGGAAAGA+AGG + chr1.1:50366853-50366872 None:intergenic 45.0%
! GAGTCTTGGCAGAGTCTTTT+TGG - chr1.1:50367170-50367189 MS.gene068516:intron 45.0%
! TGCTCTGGTAATGTTTCGAC+AGG - chr1.1:50366710-50366729 MS.gene068516:intron 45.0%
!! ATTTCTGGCCAAGAATTCGG+GGG - chr1.1:50367443-50367462 MS.gene068516:intron 45.0%
!! GCTACAAGTAGAGAGCATCA+AGG - chr1.1:50367643-50367662 MS.gene068516:intron 45.0%
ACCCTTTCACACCGGGTTAT+AGG - chr1.1:50366202-50366221 MS.gene068516:CDS 50.0%
AGTCTTTGGGCTGCCTTCAT+TGG + chr1.1:50366499-50366518 None:intergenic 50.0%
CAATATTGCTGAGCTTCCCC+TGG - chr1.1:50367618-50367637 MS.gene068516:intron 50.0%
CGCTGTTCTCTTGCATAGAG+AGG - chr1.1:50367828-50367847 MS.gene068516:intron 50.0%
CTGCCTTCATTGGGTGTAAG+GGG + chr1.1:50366489-50366508 None:intergenic 50.0%
GCAGCAGCTCGTGAAAGTAA+CGG + chr1.1:50365922-50365941 None:intergenic 50.0%
GCCTATAACCCGGTGTGAAA+GGG + chr1.1:50366206-50366225 None:intergenic 50.0%
GCCTGGAGCATGGAAAATGT+TGG - chr1.1:50366224-50366243 MS.gene068516:CDS 50.0%
GCTCTCTACTTGTAGCTACC+AGG + chr1.1:50367639-50367658 None:intergenic 50.0%
GCTGCCTTCATTGGGTGTAA+GGG + chr1.1:50366490-50366509 None:intergenic 50.0%
GGGGAAGCTCAGCAATATTG+CGG + chr1.1:50367618-50367637 None:intergenic 50.0%
GTCTTTGGGCTGCCTTCATT+GGG + chr1.1:50366498-50366517 None:intergenic 50.0%
GTGTAGTGCCATAGCCCATA+AGG - chr1.1:50367265-50367284 MS.gene068516:intron 50.0%
TAGTATCTGCCGGGCTTCTT+AGG - chr1.1:50367584-50367603 MS.gene068516:intron 50.0%
TCGTGCTTTCAGTTTCCCAG+TGG - chr1.1:50366860-50366879 MS.gene068516:intron 50.0%
TGCCTTCATTGGGTGTAAGG+GGG + chr1.1:50366488-50366507 None:intergenic 50.0%
! ACTGGGAAACTGAAAGCACG+AGG + chr1.1:50366861-50366880 None:intergenic 50.0%
! AGTGCTGGAAAAGATGGTGC+AGG - chr1.1:50368194-50368213 MS.gene068516:CDS 50.0%
! CGGCCCTCATTTTGTGTAAG+GGG + chr1.1:50366407-50366426 None:intergenic 50.0%
! GCCGGGCTTCTTAGGATTTT+TGG - chr1.1:50367592-50367611 MS.gene068516:intron 50.0%
! GGCCCTCATTTTGTGTAAGG+GGG + chr1.1:50366406-50366425 None:intergenic 50.0%
!! AAATGTTGGTGGCCCAACGA+TGG - chr1.1:50366238-50366257 MS.gene068516:CDS 50.0%
CACCCCCTTACACCCAATGA+AGG - chr1.1:50366483-50366502 MS.gene068516:CDS 55.0%
CAGGGGATGCAGAGTCCATT+TGG - chr1.1:50367894-50367913 MS.gene068516:intron 55.0%
CATGCTCCAGGCCTATAACC+CGG + chr1.1:50366216-50366235 None:intergenic 55.0%
GGCCTATAACCCGGTGTGAA+AGG + chr1.1:50366207-50366226 None:intergenic 55.0%
GGCTGCCTTCATTGGGTGTA+AGG + chr1.1:50366491-50366510 None:intergenic 55.0%
TTCACACCGGGTTATAGGCC+TGG - chr1.1:50366207-50366226 MS.gene068516:CDS 55.0%
ACTCTGCATCCCCTGCAGCA+GGG + chr1.1:50367889-50367908 None:intergenic 60.0%
CGGGTTATAGGCCTGGAGCA+TGG - chr1.1:50366214-50366233 MS.gene068516:CDS 60.0%
AAGCTGGTGCTCCCTGCTGC+AGG - chr1.1:50367875-50367894 MS.gene068516:intron 65.0%
AGCTGGTGCTCCCTGCTGCA+GGG - chr1.1:50367876-50367895 MS.gene068516:intron 65.0%
GACTCTGCATCCCCTGCAGC+AGG + chr1.1:50367890-50367909 None:intergenic 65.0%
GCTGGTGCTCCCTGCTGCAG+GGG - chr1.1:50367877-50367896 MS.gene068516:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 50365860 50368227 50365860 ID=MS.gene068516
chr1.1 mRNA 50365860 50368227 50365860 ID=MS.gene068516.t1;Parent=MS.gene068516
chr1.1 exon 50368136 50368227 50368136 ID=MS.gene068516.t1.exon1;Parent=MS.gene068516.t1
chr1.1 CDS 50368136 50368227 50368136 ID=cds.MS.gene068516.t1;Parent=MS.gene068516.t1
chr1.1 exon 50367294 50367355 50367294 ID=MS.gene068516.t1.exon2;Parent=MS.gene068516.t1
chr1.1 CDS 50367294 50367355 50367294 ID=cds.MS.gene068516.t1;Parent=MS.gene068516.t1
chr1.1 exon 50366595 50366651 50366595 ID=MS.gene068516.t1.exon3;Parent=MS.gene068516.t1
chr1.1 CDS 50366595 50366651 50366595 ID=cds.MS.gene068516.t1;Parent=MS.gene068516.t1
chr1.1 exon 50366418 50366511 50366418 ID=MS.gene068516.t1.exon4;Parent=MS.gene068516.t1
chr1.1 CDS 50366418 50366511 50366418 ID=cds.MS.gene068516.t1;Parent=MS.gene068516.t1
chr1.1 exon 50366132 50366272 50366132 ID=MS.gene068516.t1.exon5;Parent=MS.gene068516.t1
chr1.1 CDS 50366132 50366272 50366132 ID=cds.MS.gene068516.t1;Parent=MS.gene068516.t1
chr1.1 exon 50365860 50365943 50365860 ID=MS.gene068516.t1.exon6;Parent=MS.gene068516.t1
chr1.1 CDS 50365860 50365943 50365860 ID=cds.MS.gene068516.t1;Parent=MS.gene068516.t1
Gene Sequence

>MS.gene068516

ACATGAATGATATCCAATGGAGAATTTTAAGTGGCAAAAGTCGTTATGCAGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGTGAGTGTTTATGGCTTCTGTGTTACTTGTGACCTTGAATTTTTGCTGTATATGGTTGATATTTTTAATATTTGTGTCAAAAATCTGGTTTTCATGGTTTTTCCTTGCACGATATTCTCTGTTCCTTACTATAAAACCCACTTTTGAGATTTATTTTTCCCTTGATATAAGATTCTTTACAAAATTTCACATTCATTAATATTTTCTTTTCAAAAATACCCCTATTTAATATAAAGTGACTTTTCTACATACCCTTTCACACCGGGTTATAGGCCTGGAGCATGGAAAATGTTGGTGGCCCAACGATGGATTTAGAAGACACTCTAATACCATCTTATAATTGAACTTGGGATCTAACTCATTATGACAAGATCATTTTGCAAAACGAGGAGTGTTCAAACTTAATAAACACTACTTAAGCTATATTTCTAGGTGTTGTAGATTGAACACACCCCCTTACACAAAATGAGGGCCGTTCAAACCTAATAAACTCTACTTAAGCTATATTTCTAGGCGATTTAGAATTGAACACACCCCCTTACACCCAATGAAGGCAGCCCAAAGACTCCACAGTTAACACTGCTTTGCCAAAGCAACTACTGACTTTTCCTTTAATTGGGTTTACTGAGATGGGGGATTCTCTTGCTCATTTAGGTTGTAGAATAGTTTTTGGTAGAAATTTTTAACTGTTGTGAAATATTTACATTTTGAAAATGCCTCTAGCATTCTATCTTTATTTTTTAACTGCATTTTGTTCATGCTCTGGTAATGTTTCGACAGGAGTGCTTTGATCCCATCGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTATATGGGTAAGCAACTACAATTTATTTTAATGTTGGTTGATAGTGGTATCCTCTCTATACAACCTTCTTTCCTCGTGCTTTCAGTTTCCCAGTGGTTAGTTATTGTACACATGAATTATTAACAGTCTTAAATTACTAACTGTAGATTATAGACTACCAATGCCATATGTTGAAGCTAAACCTGAATTGTGATAAATATGCATATTTCCTCTTTTACTCTCTCATCCCCTCTCCTCTACATAATCAATGGTCGATGGAAAACCTAGTTGATAGGCTGTCTGACATTGCGTAAGAGCATGTTTTAGGGTGATTTAATTTCCACTTCTATCCATCGTTCACAGGAATTTTTTCATTTAGCATGAGTTTATATATTTTTTATTACGAGTCTTGGCAGAGTCTTTTTGGTAGACGAGTCACATGATGATGCATTTGTCAACAATGGGTTTTAAATGATTTTTTCAAGAATGTTGCTAACTAGTGTAGTGCCATAGCCCATAAGGACACTAGTTAAGAAATCAATGCACGAGAAACTTAATTGAAAATCACAAGATTAAATGTTTAAGGAATCTTAAAGCTCAATTAAATGTATTTTGTGGTCTCTTTATTCCATGTTTTCTGATAATATAGTGTATTTTGAATTTTGTGCAGGCGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATCGTTTTAATTGTGAAGTATGTGGCTTTCTCTGCTTTCTTGTTTTCCTGATAGTTCTTAATTTTGGTCAAACTGACTTCGTATGTATCATACTTTGCAGTTCTATTGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCCGCAATATTGCTGAGCTTCCCCTGGTAGCTACAAGTAGAGAGCATCAAGGAAAAGTAAGCAATTATTTTTTTTTACGAATTACTCATATTGAAAAAGTGGACTAATAGATGCATTCTAATAACTTTCTTTTTTACATCTTCCAAAGATGATATATTTTACCAACGATAAGCTCTATTAACATGCGATTTTCCCTTTCAGGGTTATTTTCAAGCGCTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCCATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGGTAAAGTTCATCTTCTAAATTTACTGGTTAACTTAAACACGACCTTTATATATTATTGTTATCTTACTGACATGGCATACTAAGAGAATGGTTATGTTGACCTGAGTTCAGAATTGGAAGAAACTGTTGCGAACATTAACAATTAACAAGTATTAACAACTACAATTTTTGTTTTTTGTTTTGGCCAGTTAACCAAACATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACATCAGTGCTGGAAAAGATGGTGCAGGCGACAGAATGA
Protein sequence

>MS.gene068516.t1

TUMISNGEFUVAKVVMQSIYRYFHELLQFFESALIPSLQYLVVTUFLLWYMGEIFLAKNSGECIASFULUILLUYLPGFLGFLAAILLSFPWULQVESIKEKVIFKRCSLAURGCCLLUMUKSWCSLLQGMQSPFGLRNUAFTRUVKISUPNILKRCSSPSSTKHQCWKRWCRRQN