AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054559


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054559.t1 MTR_4g007980 98.061 361 7 0 1 361 100 460 0.0 733
MS.gene054559.t1 MTR_2g036510 29.231 325 193 14 21 334 295 593 7.18e-25 106
MS.gene054559.t1 MTR_2g036510 31.047 277 164 10 67 337 287 542 2.83e-21 95.5
MS.gene054559.t1 MTR_2g036510 28.571 217 128 8 120 334 282 473 3.29e-16 80.5
MS.gene054559.t1 MTR_2g036510 25.714 280 179 12 19 284 345 609 6.48e-11 63.9
MS.gene054559.t1 MTR_8g105590 28.446 341 208 13 1 332 298 611 7.87e-25 106
MS.gene054559.t1 MTR_8g105590 29.379 177 115 4 107 283 289 455 2.68e-15 77.4
MS.gene054559.t1 MTR_8g105590 25.979 281 177 10 19 284 365 629 2.46e-12 68.6
MS.gene054559.t1 MTR_1g084120 29.057 265 149 12 73 335 25 252 8.02e-17 82.4
MS.gene054559.t1 MTR_1g084120 29.808 312 178 16 19 328 25 297 2.17e-16 80.9
MS.gene054559.t1 MTR_1g089370 26.780 295 181 11 54 336 8 279 3.43e-13 71.2
MS.gene054559.t1 MTR_2g087530 27.797 295 154 13 73 336 81 347 1.30e-12 69.7
MS.gene054559.t1 MTR_2g019860 27.119 236 142 8 104 334 59 269 1.44e-12 69.3
MS.gene054559.t1 MTR_2g087530 29.464 224 128 10 117 336 38 235 2.62e-12 68.6
MS.gene054559.t1 MTR_4g109680 24.090 357 221 14 17 360 20 339 3.91e-12 67.8
MS.gene054559.t1 MTR_1g492850 27.679 336 177 18 19 331 17 309 4.31e-12 67.4
MS.gene054559.t1 MTR_1g492850 27.679 336 177 18 19 331 17 309 5.26e-12 67.4
MS.gene054559.t1 MTR_1g090740 26.991 226 122 9 120 332 14 209 1.23e-11 66.2
MS.gene054559.t1 MTR_4g050540 28.814 295 151 13 73 336 86 352 8.94e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054559.t1 AT1G51550 62.973 370 122 5 1 359 98 463 6.75e-161 459
MS.gene054559.t1 AT2G18915 31.269 323 187 14 21 334 283 579 5.23e-29 118
MS.gene054559.t1 AT2G18915 29.091 275 170 9 67 337 275 528 9.26e-19 88.2
MS.gene054559.t1 AT2G18915 31.269 323 187 14 21 334 293 589 5.27e-29 118
MS.gene054559.t1 AT2G18915 29.091 275 170 9 67 337 285 538 8.32e-19 88.2
MS.gene054559.t1 AT1G68050 30.088 339 200 17 1 332 287 595 2.21e-25 107
MS.gene054559.t1 AT1G68050 27.372 274 177 8 19 284 354 613 6.74e-16 79.3
MS.gene054559.t1 AT5G57360 29.538 325 192 14 21 334 292 590 2.20e-24 104
MS.gene054559.t1 AT5G57360 29.181 281 170 11 65 337 280 539 1.22e-17 84.7
MS.gene054559.t1 AT5G57360 28.111 217 129 8 120 334 279 470 2.78e-16 80.5
MS.gene054559.t1 AT5G57360 29.538 325 192 14 21 334 292 590 2.38e-24 104
MS.gene054559.t1 AT5G57360 29.181 281 170 11 65 337 280 539 1.43e-17 84.7
MS.gene054559.t1 AT5G57360 28.111 217 129 8 120 334 279 470 3.53e-16 80.5
MS.gene054559.t1 AT1G18610 25.723 346 209 15 19 352 22 331 1.65e-14 75.1
MS.gene054559.t1 AT1G18610 25.723 346 209 15 19 352 22 331 1.65e-14 75.1
MS.gene054559.t1 AT1G08420 28.475 295 152 13 73 336 102 368 1.01e-13 73.2
MS.gene054559.t1 AT1G08420 28.475 295 152 13 73 336 102 368 1.04e-13 73.2
MS.gene054559.t1 AT1G74150 26.471 272 168 9 73 342 56 297 1.16e-13 72.4
MS.gene054559.t1 AT1G74150 26.471 272 168 9 73 342 72 313 1.34e-13 72.4
MS.gene054559.t1 AT1G74150 26.471 272 168 9 73 342 72 313 1.39e-13 72.4
MS.gene054559.t1 AT1G74150 26.471 272 168 9 73 342 72 313 1.49e-13 72.4
MS.gene054559.t1 AT2G27210 27.622 286 160 12 70 336 100 357 2.15e-13 72.0
MS.gene054559.t1 AT2G27210 27.622 286 160 12 70 336 100 357 2.52e-13 72.0
MS.gene054559.t1 AT2G36360 28.446 341 177 19 19 331 17 318 1.14e-12 69.3
MS.gene054559.t1 AT2G36360 27.679 336 177 17 19 331 17 309 1.97e-12 68.6
MS.gene054559.t1 AT2G36360 27.679 336 177 17 19 331 17 309 2.05e-12 68.6
MS.gene054559.t1 AT2G36360 27.679 336 177 17 19 331 17 309 2.05e-12 68.6
MS.gene054559.t1 AT2G36360 27.679 336 177 17 19 331 17 309 2.46e-12 68.6
MS.gene054559.t1 AT5G18590 27.477 222 131 8 116 332 61 257 6.25e-11 64.3
MS.gene054559.t1 AT5G18590 27.477 222 131 8 116 332 61 257 6.25e-11 64.3

Find 94 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTAGGTTGTTAATTTA+TGG 0.139839 4.1:+87524369 MS.gene054559:CDS
GAGTGAGAAGCTCTTGCTTT+AGG 0.168448 4.1:-87522578 None:intergenic
GGTGATTTCCTTGTTCTCTT+TGG 0.218840 4.1:+87523850 MS.gene054559:CDS
GACTTCACGGCCTTCGTTTA+GGG 0.260841 4.1:+87524058 MS.gene054559:CDS
GCTTCATGATGTATGGTTAT+TGG 0.269291 4.1:+87524239 MS.gene054559:CDS
GGACTTCACGGCCTTCGTTT+AGG 0.277584 4.1:+87524057 MS.gene054559:CDS
GTTCAACCTGTTGAACCTTC+TGG 0.284085 4.1:+87524609 MS.gene054559:CDS
AGTGAGAAGCTCTTGCTTTA+GGG 0.320830 4.1:-87522577 None:intergenic
TCTGACTGTCTTGTCTTGTT+TGG 0.342606 4.1:+87522614 MS.gene054559:CDS
ATGGTAATCCATGGAGGAAT+TGG 0.346210 4.1:+87524036 MS.gene054559:CDS
CCTGTTGAACCTTCTGGACT+TGG 0.354019 4.1:+87524615 MS.gene054559:CDS
TTTGTATGTGTTTGGTGGAA+TGG 0.359174 4.1:+87524575 MS.gene054559:CDS
TGACTTGCATTGGAAGAAAT+AGG 0.362144 4.1:+87524178 MS.gene054559:CDS
GGCATACCAAGTGGAAGATT+TGG 0.363811 4.1:+87523808 MS.gene054559:CDS
GGTCGTTATTTGTATGTGTT+TGG 0.379139 4.1:+87524567 MS.gene054559:CDS
TTTGAACTTGCTGTGGTTGA+AGG 0.384453 4.1:-87524453 None:intergenic
TCTTCCATTTCAATATTCTC+TGG 0.397428 4.1:-87523774 None:intergenic
CGTGCCTGCGTAGATCCTTC+TGG 0.398486 4.1:+87524546 MS.gene054559:CDS
GACTGTCTTGTCTTGTTTGG+TGG 0.399377 4.1:+87522617 MS.gene054559:CDS
TTGTCAGATAGTCATTGTTT+CGG 0.403264 4.1:+87524099 MS.gene054559:CDS
TGGTCATACATGTGTAGAAA+TGG 0.403859 4.1:+87523828 MS.gene054559:CDS
AAATGGAAGACAGTTCATTC+AGG 0.403941 4.1:+87523787 MS.gene054559:CDS
CCATCGCCTCCGCCACGTTC+AGG 0.406508 4.1:+87524147 MS.gene054559:CDS
GATTTCCTTGTTCTCTTTGG+AGG 0.411789 4.1:+87523853 MS.gene054559:CDS
TTCTGGACTTGGATTTGATA+AGG 0.415767 4.1:+87524626 MS.gene054559:CDS
TCATGGAAAATGATAGATGT+TGG 0.416089 4.1:+87523955 MS.gene054559:CDS
GAGCTTGTGCTTCAACTCTA+AGG 0.421662 4.1:+87524663 MS.gene054559:CDS
CATGGAAAATGATAGATGTT+GGG 0.424832 4.1:+87523956 MS.gene054559:CDS
TTGTTTGGTGGTGGCTGTGA+TGG 0.433357 4.1:+87522629 MS.gene054559:CDS
CCAAGTCCAGAAGGTTCAAC+AGG 0.443345 4.1:-87524615 None:intergenic
TGTCTTGTCTTGTTTGGTGG+TGG 0.453433 4.1:+87522620 MS.gene054559:CDS
CACTCTCTTTGAACTTGCTG+TGG 0.455008 4.1:-87524460 None:intergenic
TGGAAACGATGGAAATCAAA+TGG 0.459866 4.1:+87524495 MS.gene054559:CDS
GAGTGTTGCTCCACCACCTA+GGG 0.460059 4.1:+87523978 MS.gene054559:CDS
GGTAGGTTGTTAATTTATGG+AGG 0.460207 4.1:+87524372 MS.gene054559:CDS
ATTTCCAGAGAATATTGAAA+TGG 0.461693 4.1:+87523770 MS.gene054559:CDS
CGTCAAAATGATACATGGAT+TGG 0.465503 4.1:+87523895 MS.gene054559:CDS
GTGTTTGGTGGAATGGTGGA+TGG 0.468198 4.1:+87524582 MS.gene054559:CDS
CTTGTCAAGGTTACATGAGA+TGG 0.473461 4.1:+87524265 MS.gene054559:CDS
ATGAAGTGCTTCATGATGTA+TGG 0.478974 4.1:+87524232 MS.gene054559:CDS
CGTTATTTGTATGTGTTTGG+TGG 0.484542 4.1:+87524570 MS.gene054559:CDS
GGACACACGTTGACTTGCAT+TGG 0.486949 4.1:+87524168 MS.gene054559:CDS
CCTGAACGTGGCGGAGGCGA+TGG 0.489645 4.1:-87524147 None:intergenic
TTTGGAGGCATCAATGATCA+TGG 0.493134 4.1:+87523868 MS.gene054559:CDS
AGAGAGTGTTGACGAGGATG+TGG 0.493745 4.1:+87524475 MS.gene054559:CDS
CATGGAGGAATTGGACTTCA+CGG 0.495304 4.1:+87524045 MS.gene054559:CDS
GGTATTTCACTTCCTAGAGT+TGG 0.496132 4.1:+87524324 MS.gene054559:CDS
ATAGTCATTGTTTCGGCACA+TGG 0.499649 4.1:+87524106 MS.gene054559:CDS
GCATGAGCTCCCCTAGGTGG+TGG 0.503523 4.1:-87523988 None:intergenic
GGAGTGTTGCTCCACCACCT+AGG 0.505879 4.1:+87523977 MS.gene054559:CDS
GTATGTGTTTGGTGGAATGG+TGG 0.507525 4.1:+87524578 MS.gene054559:CDS
AGTTGGTCACACTGCTACAA+TGG 0.510947 4.1:+87524341 MS.gene054559:CDS
CATAAATTGTCATACCCTCA+TGG 0.513611 4.1:+87522542 MS.gene054559:CDS
CTAGGAAGTGAAATACCATC+TGG 0.516166 4.1:-87524318 None:intergenic
GCTCATGCTGCTTGTTGCAT+CGG 0.522888 4.1:+87524003 MS.gene054559:CDS
ACTTCACGGCCTTCGTTTAG+GGG 0.526092 4.1:+87524059 MS.gene054559:CDS
TTGCATCGGCGACAAGAGAA+TGG 0.535800 4.1:+87524017 MS.gene054559:CDS
AACGTGGCGGAGGCGATGGA+TGG 0.538917 4.1:-87524143 None:intergenic
ACTTGCTGTGGTTGAAGGAA+TGG 0.543167 4.1:-87524448 None:intergenic
GTGTGTCCTGAACGTGGCGG+AGG 0.547895 4.1:-87524153 None:intergenic
GTAGCAGTGTGACCAACTCT+AGG 0.558419 4.1:-87524336 None:intergenic
GAGAAGACTCATCAAGACAT+AGG 0.561244 4.1:+87524394 MS.gene054559:CDS
TGGTTATTGGATACTTGTCA+AGG 0.561263 4.1:+87524252 MS.gene054559:CDS
TTTGGTGGTGGCTGTGATGG+AGG 0.568418 4.1:+87522632 MS.gene054559:CDS
GGTCATACATGTGTAGAAAT+GGG 0.572564 4.1:+87523829 MS.gene054559:CDS
GACGACACCTTGATGACACA+TGG 0.581104 4.1:+87523728 MS.gene054559:CDS
GAAACCGTCAAAATGATACA+TGG 0.591830 4.1:+87523890 MS.gene054559:CDS
GCCTTCGTTTAGGGGACACA+TGG 0.593734 4.1:+87524067 MS.gene054559:CDS
TGATGCCTCCAAAGAGAACA+AGG 0.601552 4.1:-87523858 None:intergenic
CAAGCAGCATGAGCTCCCCT+AGG 0.602113 4.1:-87523994 None:intergenic
TTATCAAATCCAAGTCCAGA+AGG 0.606895 4.1:-87524624 None:intergenic
GACAAGAGAATGGTAATCCA+TGG 0.607147 4.1:+87524027 MS.gene054559:CDS
GATTTACAAAACATACCAGA+TGG 0.608221 4.1:+87524303 MS.gene054559:CDS
ATGCCACCCATGTGTCATCA+AGG 0.622366 4.1:-87523735 None:intergenic
GACACATGGGTGGCATACAT+TGG 0.624790 4.1:+87523742 MS.gene054559:CDS
ACATACAAATAACGACCAGA+AGG 0.627124 4.1:-87524561 None:intergenic
GTATGACCAAATCTTCCACT+TGG 0.629532 4.1:-87523814 None:intergenic
CGTGAAGTCCAATTCCTCCA+TGG 0.635655 4.1:-87524044 None:intergenic
GCAGCATGAGCTCCCCTAGG+TGG 0.638154 4.1:-87523991 None:intergenic
GGAAATCTAAATCTCCATGA+GGG 0.645796 4.1:-87522556 None:intergenic
CGATGAAACGATCTAGACTT+CGG 0.657515 4.1:-87524525 None:intergenic
GTTACACACAATGAAAACAA+AGG 0.659251 4.1:+87523922 MS.gene054559:CDS
GTCAACGTGTGTCCTGAACG+TGG 0.663195 4.1:-87524159 None:intergenic
GTTCATTCAGGCATACCAAG+TGG 0.677159 4.1:+87523799 MS.gene054559:CDS
TCCATGTGTCCCCTAAACGA+AGG 0.678498 4.1:-87524068 None:intergenic
GGGAAATCTAAATCTCCATG+AGG 0.678724 4.1:-87522557 None:intergenic
ACACCTTGATGACACATGGG+TGG 0.680411 4.1:+87523732 MS.gene054559:CDS
AGTGTTGCTCCACCACCTAG+GGG 0.681365 4.1:+87523979 MS.gene054559:CDS
ACGACCAGAAGGATCTACGC+AGG 0.686097 4.1:-87524550 None:intergenic
GTTCAAAGAGAGTGTTGACG+AGG 0.688260 4.1:+87524469 MS.gene054559:CDS
TGACGAGGATGTGGAAACGA+TGG 0.693492 4.1:+87524484 MS.gene054559:CDS
ACGACACCTTGATGACACAT+GGG 0.706425 4.1:+87523729 MS.gene054559:CDS
AAGAGAATGGTAATCCATGG+AGG 0.711153 4.1:+87524030 MS.gene054559:CDS
AACGTGTGTCCTGAACGTGG+CGG 0.807074 4.1:-87524156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATAAAATGATAACC+TGG - chr4.1:87522764-87522783 None:intergenic 15.0%
!!! CTTTTATTTCTTTCTTTTTT+TGG + chr4.1:87522673-87522692 MS.gene054559:intron 15.0%
!!! TTAAAAGTTTGTTATAGTTT+AGG + chr4.1:87523216-87523235 MS.gene054559:intron 15.0%
!! AAAAGAAAGAAATAAAAGCA+TGG - chr4.1:87522671-87522690 None:intergenic 20.0%
!! CAGTGTATAAATAATTCATA+TGG - chr4.1:87523521-87523540 None:intergenic 20.0%
!! TGTATAAATAATTCATATGG+TGG - chr4.1:87523518-87523537 None:intergenic 20.0%
!! TTACAGTAATTGATGTAAAT+TGG + chr4.1:87523367-87523386 MS.gene054559:intron 20.0%
! AGGTAAATAAATCCTTCTTA+TGG - chr4.1:87523439-87523458 None:intergenic 25.0%
! ATTATTTACCCTAAAGAGAA+AGG + chr4.1:87522829-87522848 MS.gene054559:intron 25.0%
! ATTTCCAGAGAATATTGAAA+TGG + chr4.1:87523770-87523789 MS.gene054559:CDS 25.0%
! GTCTTGACTTAAAAATTAGA+CGG - chr4.1:87523008-87523027 None:intergenic 25.0%
! GTTTAATTCCTTTCTCTTTA+GGG - chr4.1:87522840-87522859 None:intergenic 25.0%
! TAAAGAGAAAGGAATTAAAC+AGG + chr4.1:87522840-87522859 MS.gene054559:intron 25.0%
! TGTTTAATTCCTTTCTCTTT+AGG - chr4.1:87522841-87522860 None:intergenic 25.0%
!! ACATAGGAAAAATGACTTTT+GGG + chr4.1:87524410-87524429 MS.gene054559:CDS 25.0%
!! AGAAATAGGACAATACTTTT+TGG + chr4.1:87524192-87524211 MS.gene054559:CDS 25.0%
!! TTATTTATACACTGCCTTTT+TGG + chr4.1:87523527-87523546 MS.gene054559:intron 25.0%
!!! TTTGTTTTGTGCTTTGTTTT+AGG + chr4.1:87523706-87523725 MS.gene054559:intron 25.0%
AAGAAGGATTTATTTACCTG+TGG + chr4.1:87523440-87523459 MS.gene054559:intron 30.0%
ATTAGTCAAATCTCGACTAT+TGG + chr4.1:87523562-87523581 MS.gene054559:intron 30.0%
CATGGAAAATGATAGATGTT+GGG + chr4.1:87523956-87523975 MS.gene054559:CDS 30.0%
CTAACTTTCAAGGACTATAT+AGG - chr4.1:87523469-87523488 None:intergenic 30.0%
CTATATAGTCCTTGAAAGTT+AGG + chr4.1:87523467-87523486 MS.gene054559:intron 30.0%
GATTTACAAAACATACCAGA+TGG + chr4.1:87524303-87524322 MS.gene054559:CDS 30.0%
GTTACACACAATGAAAACAA+AGG + chr4.1:87523922-87523941 MS.gene054559:CDS 30.0%
TACTTGATCTTACCATAAGA+AGG + chr4.1:87523424-87523443 MS.gene054559:intron 30.0%
TCATGGAAAATGATAGATGT+TGG + chr4.1:87523955-87523974 MS.gene054559:CDS 30.0%
TCTTCCATTTCAATATTCTC+TGG - chr4.1:87523777-87523796 None:intergenic 30.0%
TTGTCAGATAGTCATTGTTT+CGG + chr4.1:87524099-87524118 MS.gene054559:CDS 30.0%
! ATCTAGTTTGAAGTCCAAAA+AGG - chr4.1:87523544-87523563 None:intergenic 30.0%
! ATTTTCAGAAGTGATTCACA+TGG + chr4.1:87522724-87522743 MS.gene054559:intron 30.0%
! CAATCCATGTATCATTTTGA+CGG - chr4.1:87523897-87523916 None:intergenic 30.0%
! CGAGTAACAAAAGTGTAATT+AGG + chr4.1:87523186-87523205 MS.gene054559:intron 30.0%
! GACATAGGAAAAATGACTTT+TGG + chr4.1:87524409-87524428 MS.gene054559:CDS 30.0%
!! AATAGGACAATACTTTTTGG+AGG + chr4.1:87524195-87524214 MS.gene054559:CDS 30.0%
!! TTGATAAGGAGCTTTTTCTT+GGG + chr4.1:87524640-87524659 MS.gene054559:CDS 30.0%
!! TTTGATAAGGAGCTTTTTCT+TGG + chr4.1:87524639-87524658 MS.gene054559:CDS 30.0%
!!! ACAAAGGCATTACATTTTCA+TGG + chr4.1:87523938-87523957 MS.gene054559:CDS 30.0%
AAATGGAAGACAGTTCATTC+AGG + chr4.1:87523787-87523806 MS.gene054559:CDS 35.0%
AAGGACCTGATTGTAACAAT+TGG + chr4.1:87523091-87523110 MS.gene054559:intron 35.0%
ACATACAAATAACGACCAGA+AGG - chr4.1:87524564-87524583 None:intergenic 35.0%
AGACTAACTTAGACCAACAT+TGG + chr4.1:87523024-87523043 MS.gene054559:intron 35.0%
AGGACCTGATTGTAACAATT+GGG + chr4.1:87523092-87523111 MS.gene054559:intron 35.0%
ATTAGACGGTTAGTAGACAA+AGG - chr4.1:87522994-87523013 None:intergenic 35.0%
CATAAATTGTCATACCCTCA+TGG + chr4.1:87522542-87522561 MS.gene054559:CDS 35.0%
CGTCAAAATGATACATGGAT+TGG + chr4.1:87523895-87523914 MS.gene054559:CDS 35.0%
CGTTATTTGTATGTGTTTGG+TGG + chr4.1:87524570-87524589 MS.gene054559:CDS 35.0%
GAAACCGTCAAAATGATACA+TGG + chr4.1:87523890-87523909 MS.gene054559:CDS 35.0%
GCTTCATGATGTATGGTTAT+TGG + chr4.1:87524239-87524258 MS.gene054559:CDS 35.0%
GGAAATCTAAATCTCCATGA+GGG - chr4.1:87522559-87522578 None:intergenic 35.0%
GGAGGTAGGTTGTTAATTTA+TGG + chr4.1:87524369-87524388 MS.gene054559:CDS 35.0%
GGTAGGTTGTTAATTTATGG+AGG + chr4.1:87524372-87524391 MS.gene054559:CDS 35.0%
GGTCATACATGTGTAGAAAT+GGG + chr4.1:87523829-87523848 MS.gene054559:CDS 35.0%
GGTCGTTATTTGTATGTGTT+TGG + chr4.1:87524567-87524586 MS.gene054559:CDS 35.0%
TGGAAACGATGGAAATCAAA+TGG + chr4.1:87524495-87524514 MS.gene054559:CDS 35.0%
TGGTCATACATGTGTAGAAA+TGG + chr4.1:87523828-87523847 MS.gene054559:CDS 35.0%
TGGTTATTGGATACTTGTCA+AGG + chr4.1:87524252-87524271 MS.gene054559:CDS 35.0%
TTAAGCATTTCAACTTGCCT+AGG + chr4.1:87523394-87523413 MS.gene054559:intron 35.0%
TTATCAAATCCAAGTCCAGA+AGG - chr4.1:87524627-87524646 None:intergenic 35.0%
TTCTGGACTTGGATTTGATA+AGG + chr4.1:87524626-87524645 MS.gene054559:CDS 35.0%
! ATGAAGTGCTTCATGATGTA+TGG + chr4.1:87524232-87524251 MS.gene054559:CDS 35.0%
! GTGGCATATTTTCCAAAACT+GGG - chr4.1:87523499-87523518 None:intergenic 35.0%
! TGACTTGCATTGGAAGAAAT+AGG + chr4.1:87524178-87524197 MS.gene054559:CDS 35.0%
! TTTGTATGTGTTTGGTGGAA+TGG + chr4.1:87524575-87524594 MS.gene054559:CDS 35.0%
!! ACAATACTTTTTGGAGGTAG+AGG + chr4.1:87524201-87524220 MS.gene054559:CDS 35.0%
!! TGATAAGGAGCTTTTTCTTG+GGG + chr4.1:87524641-87524660 MS.gene054559:CDS 35.0%
AAGAGAATGGTAATCCATGG+AGG + chr4.1:87524030-87524049 MS.gene054559:CDS 40.0%
ACTGCCCAATTGTTACAATC+AGG - chr4.1:87523099-87523118 None:intergenic 40.0%
AGATCAAGTAGAAGTCTCCT+AGG - chr4.1:87523414-87523433 None:intergenic 40.0%
AGGACTATATAGGAATCCAC+AGG - chr4.1:87523459-87523478 None:intergenic 40.0%
AGTGAGAAGCTCTTGCTTTA+GGG - chr4.1:87522580-87522599 None:intergenic 40.0%
ATAGTCATTGTTTCGGCACA+TGG + chr4.1:87524106-87524125 MS.gene054559:CDS 40.0%
ATGGTAATCCATGGAGGAAT+TGG + chr4.1:87524036-87524055 MS.gene054559:CDS 40.0%
CAGGTCCTTTCGTCTATTAA+CGG - chr4.1:87523080-87523099 None:intergenic 40.0%
CGATGAAACGATCTAGACTT+CGG - chr4.1:87524528-87524547 None:intergenic 40.0%
CTAGACCGTTAATAGACGAA+AGG + chr4.1:87523072-87523091 MS.gene054559:intron 40.0%
CTAGGAAGTGAAATACCATC+TGG - chr4.1:87524321-87524340 None:intergenic 40.0%
CTTGTCAAGGTTACATGAGA+TGG + chr4.1:87524265-87524284 MS.gene054559:CDS 40.0%
GACAAGAGAATGGTAATCCA+TGG + chr4.1:87524027-87524046 MS.gene054559:CDS 40.0%
GAGAAGACTCATCAAGACAT+AGG + chr4.1:87524394-87524413 MS.gene054559:CDS 40.0%
GATTTCCTTGTTCTCTTTGG+AGG + chr4.1:87523853-87523872 MS.gene054559:CDS 40.0%
GGGAAATCTAAATCTCCATG+AGG - chr4.1:87522560-87522579 None:intergenic 40.0%
GGGACATAACCTAACTTTCA+AGG - chr4.1:87523479-87523498 None:intergenic 40.0%
GGTATTTCACTTCCTAGAGT+TGG + chr4.1:87524324-87524343 MS.gene054559:CDS 40.0%
GGTGATTTCCTTGTTCTCTT+TGG + chr4.1:87523850-87523869 MS.gene054559:CDS 40.0%
GTATGACCAAATCTTCCACT+TGG - chr4.1:87523817-87523836 None:intergenic 40.0%
TTTCACTAAAGACGCTTCAG+AGG + chr4.1:87523646-87523665 MS.gene054559:intron 40.0%
! ACTTTTGTTACTCGAGTGTC+AGG - chr4.1:87523180-87523199 None:intergenic 40.0%
! CACACTGCTACAATGGTTTT+AGG + chr4.1:87524348-87524367 MS.gene054559:CDS 40.0%
! GGTGGCATATTTTCCAAAAC+TGG - chr4.1:87523500-87523519 None:intergenic 40.0%
! GTGTCAGGATTGCACAATTT+TGG - chr4.1:87523165-87523184 None:intergenic 40.0%
! GTTAGGTTATGTCCCAGTTT+TGG + chr4.1:87523484-87523503 MS.gene054559:intron 40.0%
! TAGACCAACATTGGCTACTT+AGG + chr4.1:87523033-87523052 MS.gene054559:intron 40.0%
! TCTGACTGTCTTGTCTTGTT+TGG + chr4.1:87522614-87522633 MS.gene054559:CDS 40.0%
!! CTTTTTGGAGGTAGAGGTTT+AGG + chr4.1:87524207-87524226 MS.gene054559:CDS 40.0%
!! TTTGAACTTGCTGTGGTTGA+AGG - chr4.1:87524456-87524475 None:intergenic 40.0%
!! TTTGGAGGCATCAATGATCA+TGG + chr4.1:87523868-87523887 MS.gene054559:CDS 40.0%
!!! ACTGCTACAATGGTTTTAGG+AGG + chr4.1:87524351-87524370 MS.gene054559:CDS 40.0%
!!! CTACAATGGTTTTAGGAGGT+AGG + chr4.1:87524355-87524374 MS.gene054559:CDS 40.0%
AGAGCCTAAGTAGCCAATGT+TGG - chr4.1:87523040-87523059 None:intergenic 45.0%
AGTTCGCCCAATTGAAACAC+AGG + chr4.1:87523137-87523156 MS.gene054559:intron 45.0%
AGTTGGTCACACTGCTACAA+TGG + chr4.1:87524341-87524360 MS.gene054559:CDS 45.0%
CATGGAGGAATTGGACTTCA+CGG + chr4.1:87524045-87524064 MS.gene054559:CDS 45.0%
GAGTGAGAAGCTCTTGCTTT+AGG - chr4.1:87522581-87522600 None:intergenic 45.0%
GGCATACCAAGTGGAAGATT+TGG + chr4.1:87523808-87523827 MS.gene054559:CDS 45.0%
GTTCAACCTGTTGAACCTTC+TGG + chr4.1:87524609-87524628 MS.gene054559:CDS 45.0%
GTTCATTCAGGCATACCAAG+TGG + chr4.1:87523799-87523818 MS.gene054559:CDS 45.0%
GTTCGCCCAATTGAAACACA+GGG + chr4.1:87523138-87523157 MS.gene054559:intron 45.0%
TGATGCCTCCAAAGAGAACA+AGG - chr4.1:87523861-87523880 None:intergenic 45.0%
TTCGCCCAATTGAAACACAG+GGG + chr4.1:87523139-87523158 MS.gene054559:intron 45.0%
TTGGCCCCTGTGTTTCAATT+GGG - chr4.1:87523146-87523165 None:intergenic 45.0%
TTTGGCCCCTGTGTTTCAAT+TGG - chr4.1:87523147-87523166 None:intergenic 45.0%
! ACATTGGCTACTTAGGCTCT+TGG + chr4.1:87523040-87523059 MS.gene054559:intron 45.0%
! ACGACACCTTGATGACACAT+GGG + chr4.1:87523729-87523748 MS.gene054559:CDS 45.0%
! GTATGTGTTTGGTGGAATGG+TGG + chr4.1:87524578-87524597 MS.gene054559:CDS 45.0%
!! ACTTGCTGTGGTTGAAGGAA+TGG - chr4.1:87524451-87524470 None:intergenic 45.0%
!! CAATTGGGCAGTTTGCTGTA+TGG + chr4.1:87523107-87523126 MS.gene054559:intron 45.0%
!! CACTCTCTTTGAACTTGCTG+TGG - chr4.1:87524463-87524482 None:intergenic 45.0%
!! GACTGTCTTGTCTTGTTTGG+TGG + chr4.1:87522617-87522636 MS.gene054559:CDS 45.0%
!! GTTCAAAGAGAGTGTTGACG+AGG + chr4.1:87524469-87524488 MS.gene054559:CDS 45.0%
!! TGTCTTGTCTTGTTTGGTGG+TGG + chr4.1:87522620-87522639 MS.gene054559:CDS 45.0%
ACTTCACGGCCTTCGTTTAG+GGG + chr4.1:87524059-87524078 MS.gene054559:CDS 50.0%
AGAGACTCAAGTCGCGCAAT+TGG - chr4.1:87522944-87522963 None:intergenic 50.0%
ATGCCACCCATGTGTCATCA+AGG - chr4.1:87523738-87523757 None:intergenic 50.0%
ATGGCTTCTAGTGTTCGACC+AGG + chr4.1:87522743-87522762 MS.gene054559:intron 50.0%
CCAAGTCCAGAAGGTTCAAC+AGG - chr4.1:87524618-87524637 None:intergenic 50.0%
CCTGTTGAACCTTCTGGACT+TGG + chr4.1:87524615-87524634 MS.gene054559:CDS 50.0%
CGTGAAGTCCAATTCCTCCA+TGG - chr4.1:87524047-87524066 None:intergenic 50.0%
GACACATGGGTGGCATACAT+TGG + chr4.1:87523742-87523761 MS.gene054559:CDS 50.0%
GACTTCACGGCCTTCGTTTA+GGG + chr4.1:87524058-87524077 MS.gene054559:CDS 50.0%
GTAGCAGTGTGACCAACTCT+AGG - chr4.1:87524339-87524358 None:intergenic 50.0%
TCCATGTGTCCCCTAAACGA+AGG - chr4.1:87524071-87524090 None:intergenic 50.0%
TGACGAGGATGTGGAAACGA+TGG + chr4.1:87524484-87524503 MS.gene054559:CDS 50.0%
TTGCGCGACTTGAGTCTCTT+AGG + chr4.1:87522945-87522964 MS.gene054559:intron 50.0%
! ACACCTTGATGACACATGGG+TGG + chr4.1:87523732-87523751 MS.gene054559:CDS 50.0%
! GACGACACCTTGATGACACA+TGG + chr4.1:87523728-87523747 MS.gene054559:CDS 50.0%
! GCTCATGCTGCTTGTTGCAT+CGG + chr4.1:87524003-87524022 MS.gene054559:CDS 50.0%
! GTGTTTGGTGGAATGGTGGA+TGG + chr4.1:87524582-87524601 MS.gene054559:CDS 50.0%
! TTGCATCGGCGACAAGAGAA+TGG + chr4.1:87524017-87524036 MS.gene054559:CDS 50.0%
!! AGAGAGTGTTGACGAGGATG+TGG + chr4.1:87524475-87524494 MS.gene054559:CDS 50.0%
!! GGACACACGTTGACTTGCAT+TGG + chr4.1:87524168-87524187 MS.gene054559:CDS 50.0%
!! TTGGGCAGTTTGCTGTATGG+AGG + chr4.1:87523110-87523129 MS.gene054559:intron 50.0%
!! TTGTTTGGTGGTGGCTGTGA+TGG + chr4.1:87522629-87522648 MS.gene054559:CDS 50.0%
AACGTGTGTCCTGAACGTGG+CGG - chr4.1:87524159-87524178 None:intergenic 55.0%
ACGACCAGAAGGATCTACGC+AGG - chr4.1:87524553-87524572 None:intergenic 55.0%
GCCTTCGTTTAGGGGACACA+TGG + chr4.1:87524067-87524086 MS.gene054559:CDS 55.0%
GGACTTCACGGCCTTCGTTT+AGG + chr4.1:87524057-87524076 MS.gene054559:CDS 55.0%
GTCAACGTGTGTCCTGAACG+TGG - chr4.1:87524162-87524181 None:intergenic 55.0%
! AGTGTTGCTCCACCACCTAG+GGG + chr4.1:87523979-87523998 MS.gene054559:CDS 55.0%
! GAGTGTTGCTCCACCACCTA+GGG + chr4.1:87523978-87523997 MS.gene054559:CDS 55.0%
!! TTTGGTGGTGGCTGTGATGG+AGG + chr4.1:87522632-87522651 MS.gene054559:CDS 55.0%
CAAGCAGCATGAGCTCCCCT+AGG - chr4.1:87523997-87524016 None:intergenic 60.0%
CGTGCCTGCGTAGATCCTTC+TGG + chr4.1:87524546-87524565 MS.gene054559:CDS 60.0%
!! GGAGTGTTGCTCCACCACCT+AGG + chr4.1:87523977-87523996 MS.gene054559:CDS 60.0%
GCAGCATGAGCTCCCCTAGG+TGG - chr4.1:87523994-87524013 None:intergenic 65.0%
GCATGAGCTCCCCTAGGTGG+TGG - chr4.1:87523991-87524010 None:intergenic 65.0%
GTGTGTCCTGAACGTGGCGG+AGG - chr4.1:87524156-87524175 None:intergenic 65.0%
! AACGTGGCGGAGGCGATGGA+TGG - chr4.1:87524146-87524165 None:intergenic 65.0%
CCATCGCCTCCGCCACGTTC+AGG + chr4.1:87524147-87524166 MS.gene054559:CDS 70.0%
! CCTGAACGTGGCGGAGGCGA+TGG - chr4.1:87524150-87524169 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 87522524 87524683 87522524 ID=MS.gene054559
chr4.1 mRNA 87522524 87524683 87522524 ID=MS.gene054559.t1;Parent=MS.gene054559
chr4.1 exon 87522524 87522653 87522524 ID=MS.gene054559.t1.exon1;Parent=MS.gene054559.t1
chr4.1 CDS 87522524 87522653 87522524 ID=cds.MS.gene054559.t1;Parent=MS.gene054559.t1
chr4.1 exon 87523728 87524683 87523728 ID=MS.gene054559.t1.exon2;Parent=MS.gene054559.t1
chr4.1 CDS 87523728 87524683 87523728 ID=cds.MS.gene054559.t1;Parent=MS.gene054559.t1
Gene Sequence

>MS.gene054559

ATGGATTCTGTTTGTTGTCATAAATTGTCATACCCTCATGGAGATTTAGATTTCCCTAAAGCAAGAGCTTCTCACTCTCTCAACTTTGTTTCTGACTGTCTTGTCTTGTTTGGTGGTGGCTGTGATGGAGGTTAGTTTCACTTTCCATGCTTTTATTTCTTTCTTTTTTTGGTTATTTTTGTTGTTGTTTTGTACTGTGTATTTTCAGAAGTGATTCACATGGCTTCTAGTGTTCGACCAGGTTATCATTTTATATAATATATATCATAATCTTATCTATTTTTTGTTTTTCATGTCAGAGATAAATTATTTACCCTAAAGAGAAAGGAATTAAACAGGAAAATATTATACTAAAAAGCTCAATTAATTGTTATTTTAGTCTCAAGATGACACGATTATGCAATTTTGATCTGTATTCCAATTGCGCGACTTGAGTCTCTTAGGTATAGTAATTGTTATAACGTTGTCCTTTGTCTACTAACCGTCTAATTTTTAAGTCAAGACTAACTTAGACCAACATTGGCTACTTAGGCTCTTGGTGTTAAATACTAGACCGTTAATAGACGAAAGGACCTGATTGTAACAATTGGGCAGTTTGCTGTATGGAGGATTCAGTTCGCCCAATTGAAACACAGGGGCCAAAATTGTGCAATCCTGACACTCGAGTAACAAAAGTGTAATTAGGTATAAATTTAAAAGTTTGTTATAGTTTAGGTGATGAGACTTATATTTGAGAATGAAGTGAATTCAATGTTATTTTCATGTCAAGTTTGTTATCACTGTATTTTTCTTATTTGAAAGATTAAAGTATAAATGAGTATGAGCTTTCTTCTTGATGTCTTGTTACAGTAATTGATGTAAATTGGAATTTTAAGCATTTCAACTTGCCTAGGAGACTTCTACTTGATCTTACCATAAGAAGGATTTATTTACCTGTGGATTCCTATATAGTCCTTGAAAGTTAGGTTATGTCCCAGTTTTGGAAAATATGCCACCATATGAATTATTTATACACTGCCTTTTTGGACTTCAAACTAGATTAGTCAAATCTCGACTATTGGATTAATCTAAGATAAGATATATATAATCATCTCGATAGTTAGATTAATCAAACAGTCGATGTTTCACTAAAGACGCTTCAGAGGATTCAAGTTGAGTAGTTATAAGTTAATATTTAATATATTTGTTTTGTGCTTTGTTTTAGGACGACACCTTGATGACACATGGGTGGCATACATTGGTAGCGATTTCCAGAGAATATTGAAATGGAAGACAGTTCATTCAGGCATACCAAGTGGAAGATTTGGTCATACATGTGTAGAAATGGGTGATTTCCTTGTTCTCTTTGGAGGCATCAATGATCATGGAAACCGTCAAAATGATACATGGATTGGAAAAGTTACACACAATGAAAACAAAGGCATTACATTTTCATGGAAAATGATAGATGTTGGGAGTGTTGCTCCACCACCTAGGGGAGCTCATGCTGCTTGTTGCATCGGCGACAAGAGAATGGTAATCCATGGAGGAATTGGACTTCACGGCCTTCGTTTAGGGGACACATGGATCTTAGAATTGTCAGATAGTCATTGTTTCGGCACATGGCATGAGATTGCTATCCATCCATCGCCTCCGCCACGTTCAGGACACACGTTGACTTGCATTGGAAGAAATAGGACAATACTTTTTGGAGGTAGAGGTTTAGGTTATGAAGTGCTTCATGATGTATGGTTATTGGATACTTGTCAAGGTTACATGAGATGGATTCAAGTACTTTATGATTTACAAAACATACCAGATGGTATTTCACTTCCTAGAGTTGGTCACACTGCTACAATGGTTTTAGGAGGTAGGTTGTTAATTTATGGAGGAGAAGACTCATCAAGACATAGGAAAAATGACTTTTGGGTATTAGATATTAGTTCCATTCCTTCAACCACAGCAAGTTCAAAGAGAGTGTTGACGAGGATGTGGAAACGATGGAAATCAAATGGATATGAACCGAAGTCTAGATCGTTTCATCGTGCCTGCGTAGATCCTTCTGGTCGTTATTTGTATGTGTTTGGTGGAATGGTGGATGGTTTAGTTCAACCTGTTGAACCTTCTGGACTTGGATTTGATAAGGAGCTTTTTCTTGGGGAGCTTGTGCTTCAACTCTAA

Protein sequence

>MS.gene054559.t1

MDSVCCHKLSYPHGDLDFPKARASHSLNFVSDCLVLFGGGCDGGRHLDDTWVAYIGSDFQRILKWKTVHSGIPSGRFGHTCVEMGDFLVLFGGINDHGNRQNDTWIGKVTHNENKGITFSWKMIDVGSVAPPPRGAHAACCIGDKRMVIHGGIGLHGLRLGDTWILELSDSHCFGTWHEIAIHPSPPPRSGHTLTCIGRNRTILFGGRGLGYEVLHDVWLLDTCQGYMRWIQVLYDLQNIPDGISLPRVGHTATMVLGGRLLIYGGEDSSRHRKNDFWVLDISSIPSTTASSKRVLTRMWKRWKSNGYEPKSRSFHRACVDPSGRYLYVFGGMVDGLVQPVEPSGLGFDKELFLGELVLQL