Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068697.t1 | AFK46111.1 | 95.9 | 221 | 6 | 1 | 10 | 227 | 67 | 287 | 9.80E-125 | 456.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068697.t1 | P27061 | 43.6 | 220 | 120 | 3 | 7 | 226 | 39 | 254 | 2.6e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068697.t1 | G7LAN6 | 95.9 | 221 | 6 | 1 | 10 | 227 | 67 | 287 | 7.0e-125 | 456.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050363 | MS.gene068697 | 0.821552 | 3.80E-53 | -1.69E-46 |
| MS.gene054626 | MS.gene068697 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene056313 | MS.gene068697 | 0.802944 | 4.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068697.t1 | MTR_8g006690 | 95.217 | 230 | 8 | 1 | 1 | 227 | 58 | 287 | 7.36e-170 | 469 |
| MS.gene068697.t1 | MTR_8g006600 | 95.217 | 230 | 8 | 1 | 1 | 227 | 58 | 287 | 7.36e-170 | 469 |
| MS.gene068697.t1 | MTR_8g005420 | 95.217 | 230 | 8 | 1 | 1 | 227 | 58 | 287 | 7.36e-170 | 469 |
| MS.gene068697.t1 | MTR_8g006575 | 94.186 | 172 | 7 | 1 | 1 | 169 | 58 | 229 | 1.91e-116 | 332 |
| MS.gene068697.t1 | MTR_8g005420 | 94.186 | 172 | 7 | 1 | 1 | 169 | 58 | 229 | 1.95e-116 | 332 |
| MS.gene068697.t1 | MTR_8g005420 | 93.103 | 174 | 9 | 1 | 1 | 171 | 58 | 231 | 1.64e-115 | 332 |
| MS.gene068697.t1 | MTR_8g005420 | 93.103 | 174 | 9 | 1 | 1 | 171 | 58 | 231 | 1.90e-114 | 331 |
| MS.gene068697.t1 | MTR_8g005420 | 98.276 | 58 | 1 | 0 | 170 | 227 | 292 | 349 | 4.37e-34 | 125 |
| MS.gene068697.t1 | MTR_8g013090 | 60.455 | 220 | 84 | 2 | 7 | 226 | 33 | 249 | 1.53e-97 | 285 |
| MS.gene068697.t1 | MTR_8g005410 | 98.450 | 129 | 2 | 0 | 99 | 227 | 24 | 152 | 1.41e-93 | 271 |
| MS.gene068697.t1 | MTR_8g046260 | 46.512 | 215 | 111 | 3 | 13 | 227 | 49 | 259 | 1.13e-64 | 201 |
| MS.gene068697.t1 | MTR_8g014640 | 43.519 | 216 | 116 | 4 | 13 | 227 | 54 | 264 | 1.03e-61 | 194 |
| MS.gene068697.t1 | MTR_8g014650 | 43.519 | 216 | 116 | 4 | 13 | 227 | 51 | 261 | 1.34e-61 | 193 |
| MS.gene068697.t1 | MTR_8g013075 | 63.077 | 130 | 48 | 0 | 97 | 226 | 23 | 152 | 5.32e-60 | 186 |
| MS.gene068697.t1 | MTR_8g013080 | 63.077 | 130 | 48 | 0 | 97 | 226 | 23 | 152 | 5.32e-60 | 186 |
| MS.gene068697.t1 | MTR_6g090070 | 43.721 | 215 | 115 | 4 | 13 | 226 | 42 | 251 | 5.73e-58 | 184 |
| MS.gene068697.t1 | MTR_1g045120 | 37.615 | 218 | 133 | 3 | 10 | 227 | 40 | 254 | 1.53e-48 | 160 |
| MS.gene068697.t1 | MTR_8g005530 | 98.592 | 71 | 1 | 0 | 99 | 169 | 7 | 77 | 5.02e-47 | 150 |
| MS.gene068697.t1 | MTR_1g073610 | 36.364 | 220 | 135 | 5 | 8 | 227 | 39 | 253 | 3.65e-43 | 146 |
| MS.gene068697.t1 | MTR_7g103500 | 38.739 | 111 | 66 | 2 | 100 | 209 | 40 | 149 | 1.41e-19 | 82.8 |
| MS.gene068697.t1 | MTR_8g466410 | 43.182 | 88 | 46 | 2 | 13 | 100 | 52 | 135 | 1.95e-18 | 79.7 |
| MS.gene068697.t1 | MTR_8g466390 | 58.491 | 53 | 22 | 0 | 172 | 224 | 14 | 66 | 5.58e-16 | 70.5 |
| MS.gene068697.t1 | MTR_8g046230 | 40.541 | 74 | 43 | 1 | 96 | 169 | 25 | 97 | 7.02e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068697.t1 | AT2G38600 | 61.290 | 217 | 81 | 2 | 10 | 226 | 37 | 250 | 3.77e-93 | 273 |
| MS.gene068697.t1 | AT2G38600 | 61.290 | 217 | 81 | 2 | 10 | 226 | 37 | 250 | 3.77e-93 | 273 |
| MS.gene068697.t1 | AT4G29270 | 42.202 | 218 | 122 | 3 | 10 | 227 | 43 | 256 | 1.93e-62 | 196 |
| MS.gene068697.t1 | AT4G29260 | 43.891 | 221 | 120 | 3 | 6 | 226 | 38 | 254 | 2.04e-61 | 193 |
| MS.gene068697.t1 | AT4G25150 | 43.925 | 214 | 116 | 3 | 13 | 226 | 50 | 259 | 8.18e-61 | 191 |
| MS.gene068697.t1 | AT5G51260 | 42.991 | 214 | 118 | 3 | 13 | 226 | 47 | 256 | 8.69e-60 | 189 |
| MS.gene068697.t1 | AT1G04040 | 37.500 | 224 | 136 | 4 | 6 | 227 | 50 | 271 | 2.41e-49 | 162 |
| MS.gene068697.t1 | AT5G44020 | 37.273 | 220 | 134 | 4 | 10 | 227 | 55 | 272 | 1.97e-47 | 157 |
| MS.gene068697.t1 | AT5G24780 | 35.648 | 216 | 131 | 7 | 13 | 226 | 59 | 268 | 7.46e-40 | 138 |
| MS.gene068697.t1 | AT5G24770 | 36.111 | 216 | 130 | 7 | 13 | 226 | 54 | 263 | 1.15e-39 | 137 |
| MS.gene068697.t1 | AT5G51260 | 40.127 | 157 | 90 | 3 | 13 | 169 | 47 | 199 | 1.28e-37 | 130 |
| MS.gene068697.t1 | AT5G24780 | 32.298 | 161 | 103 | 5 | 13 | 171 | 59 | 215 | 1.99e-24 | 97.1 |
| MS.gene068697.t1 | AT5G24770 | 33.333 | 159 | 100 | 5 | 13 | 169 | 54 | 208 | 1.01e-23 | 94.7 |
Find 66 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGTCCGTAGTGATTT+TGG | 0.138152 | 8.3:+82314350 | None:intergenic |
| TCATCAAGATGCTTGGATTT+TGG | 0.148705 | 8.3:-82314669 | MS.gene068697:CDS |
| AAGAGGAAGGGTATAGAATA+TGG | 0.225208 | 8.3:-82311655 | MS.gene068697:CDS |
| TTGTTAATTACCTTAAAATA+AGG | 0.238981 | 8.3:+82314298 | None:intergenic |
| AATCTCTTAGCTTTATAATA+AGG | 0.250871 | 8.3:+82314617 | None:intergenic |
| TATTATAAAGCTAAGAGATT+TGG | 0.260805 | 8.3:-82314614 | MS.gene068697:CDS |
| ATTATAAAGCTAAGAGATTT+GGG | 0.319914 | 8.3:-82314613 | MS.gene068697:intron |
| TGATCTCCAAGGGGAGTGTT+TGG | 0.332481 | 8.3:-82311609 | MS.gene068697:CDS |
| CTTAGTACCACAGGGTTTGC+AGG | 0.358088 | 8.3:+82314444 | None:intergenic |
| TTCAAAGTGTTCTTAGTAAC+GGG | 0.404621 | 8.3:-82314393 | MS.gene068697:CDS |
| TTGAACATCGCCGAATCAAA+TGG | 0.405341 | 8.3:+82314492 | None:intergenic |
| GAAATGCAGTACATAGGATT+GGG | 0.410928 | 8.3:+82311566 | None:intergenic |
| GATCTCCAAGGGGAGTGTTT+GGG | 0.434280 | 8.3:-82311608 | MS.gene068697:CDS |
| CAAACAATAATGTGCGTCCT+TGG | 0.456134 | 8.3:-82314826 | MS.gene068697:CDS |
| CGGAAGGAGATTGAAGAGGA+AGG | 0.460525 | 8.3:-82311668 | MS.gene068697:CDS |
| TATAGAATATGGGGAAATGT+AGG | 0.464952 | 8.3:-82311644 | MS.gene068697:CDS |
| AGAGGAAGGGTATAGAATAT+GGG | 0.466203 | 8.3:-82311654 | MS.gene068697:CDS |
| ATTTGATTCGGCGATGTTCA+AGG | 0.469405 | 8.3:-82314490 | MS.gene068697:CDS |
| AGAAATGCAGTACATAGGAT+TGG | 0.475430 | 8.3:+82311565 | None:intergenic |
| TGAACATCGCCGAATCAAAT+GGG | 0.497521 | 8.3:+82314493 | None:intergenic |
| CTACTACTCATCAAGATGCT+TGG | 0.498659 | 8.3:-82314676 | MS.gene068697:CDS |
| CAGATGCGACCCATTTGATT+CGG | 0.501157 | 8.3:-82314502 | MS.gene068697:CDS |
| TTAAACAATCTTAGTACCAC+AGG | 0.502868 | 8.3:+82314435 | None:intergenic |
| ATGAGAGGTATGGGCTGAGC+TGG | 0.503269 | 8.3:-82314865 | MS.gene068697:CDS |
| CATGTTGAGAATTACATGAT+TGG | 0.504365 | 8.3:-82314776 | MS.gene068697:CDS |
| ATTCAAAGTGTTCTTAGTAA+CGG | 0.509245 | 8.3:-82314394 | MS.gene068697:CDS |
| GTTGGTAGCCGATGAATCCT+TGG | 0.512582 | 8.3:+82314322 | None:intergenic |
| TGAAATACAAGTCATCGATT+CGG | 0.520247 | 8.3:-82311688 | MS.gene068697:CDS |
| ATTCGGCGATGTTCAAGGCA+TGG | 0.525698 | 8.3:-82314485 | MS.gene068697:CDS |
| GTTGATGATGATGAGAGGTA+TGG | 0.526024 | 8.3:-82314875 | MS.gene068697:CDS |
| CCCCTTGGAGATCAGTCCAC+TGG | 0.527498 | 8.3:+82311618 | None:intergenic |
| TTCAAGGCATGGATTAATCA+AGG | 0.531044 | 8.3:-82314474 | MS.gene068697:CDS |
| GTTGAGAATTACATGATTGG+TGG | 0.532110 | 8.3:-82314773 | MS.gene068697:CDS |
| TGAGTAGTAGAAGTAGAAAG+AGG | 0.532684 | 8.3:+82314689 | None:intergenic |
| TTGCATAACCAAGGATTCAT+CGG | 0.534552 | 8.3:-82314330 | MS.gene068697:CDS |
| TTTAAAACGTTGATAGACAA+AGG | 0.537850 | 8.3:-82314417 | MS.gene068697:CDS |
| GGAAGGAGATTGAAGAGGAA+GGG | 0.539212 | 8.3:-82311667 | MS.gene068697:CDS |
| AATCAAGAAATGCAGTACAT+AGG | 0.552007 | 8.3:+82311560 | None:intergenic |
| GATTGCCCAAACACTCCCCT+TGG | 0.552792 | 8.3:+82311603 | None:intergenic |
| GTATGGGCTGAGCTGGAGGT+TGG | 0.553413 | 8.3:-82314858 | MS.gene068697:CDS |
| GCTGAGCTGGAGGTTGGCAA+TGG | 0.567591 | 8.3:-82314852 | MS.gene068697:CDS |
| TTAGTACCACAGGGTTTGCA+GGG | 0.578209 | 8.3:+82314445 | None:intergenic |
| ACCAGTGGACTGATCTCCAA+GGG | 0.586615 | 8.3:-82311619 | MS.gene068697:CDS |
| CGAAGTGGGACTGTCTTCCA+AGG | 0.589549 | 8.3:+82314809 | None:intergenic |
| TTCGTCGTCGGAGATGATGG+TGG | 0.596102 | 8.3:-82314897 | None:intergenic |
| GGCAGGAGTGTGAAATACAA+AGG | 0.596346 | 8.3:-82311722 | MS.gene068697:intron |
| ATTACCTTAAAATAAGGCGT+TGG | 0.596763 | 8.3:+82314304 | None:intergenic |
| GAGGAAGGGTATAGAATATG+GGG | 0.605333 | 8.3:-82311653 | MS.gene068697:CDS |
| TTGATGATGATGAGAGGTAT+GGG | 0.609061 | 8.3:-82314874 | MS.gene068697:CDS |
| ACATGCTTGTAGCAACGAAG+TGG | 0.613933 | 8.3:+82314794 | None:intergenic |
| AACACTTGCCAAAATCACTA+CGG | 0.621427 | 8.3:-82314358 | MS.gene068697:CDS |
| ACGGACAATTTGCATAACCA+AGG | 0.630462 | 8.3:-82314339 | MS.gene068697:CDS |
| ATACAAGTCATCGATTCGGA+AGG | 0.633877 | 8.3:-82311684 | MS.gene068697:CDS |
| AGAGGTATGGGCTGAGCTGG+AGG | 0.636934 | 8.3:-82314862 | MS.gene068697:CDS |
| GACCAGTGGACTGATCTCCA+AGG | 0.637891 | 8.3:-82311620 | MS.gene068697:CDS |
| CATGCTTGTAGCAACGAAGT+GGG | 0.638112 | 8.3:+82314795 | None:intergenic |
| AAATGCAGTACATAGGATTG+GGG | 0.643105 | 8.3:+82311567 | None:intergenic |
| GATTCGGAAGGAGATTGAAG+AGG | 0.657286 | 8.3:-82311672 | MS.gene068697:CDS |
| ACACAATTTCATCCACGATG+AGG | 0.660835 | 8.3:+82314729 | None:intergenic |
| TAAACAATCTTAGTACCACA+GGG | 0.665394 | 8.3:+82314436 | None:intergenic |
| GGGGAAATGTAGGAGACCAG+TGG | 0.670649 | 8.3:-82311634 | MS.gene068697:CDS |
| TGGTGGTTGATGATGATGAG+AGG | 0.675061 | 8.3:-82314880 | MS.gene068697:CDS |
| TTAGTAACGGGTAGATACGA+AGG | 0.691062 | 8.3:-82314381 | MS.gene068697:CDS |
| CCAGTGGACTGATCTCCAAG+GGG | 0.746364 | 8.3:-82311618 | MS.gene068697:CDS |
| GCATGACATGAACCTCATCG+TGG | 0.754708 | 8.3:-82314741 | MS.gene068697:CDS |
| AATGTGCCCTGCAAACCCTG+TGG | 0.782788 | 8.3:-82314451 | MS.gene068697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTAGGTTAAAAA+AGG | - | chr8.3:82313884-82313903 | MS.gene068697:intron | 10.0% |
| !! | ATATATATAATTGGAAATTA+AGG | + | chr8.3:82312765-82312784 | None:intergenic | 10.0% |
| !! | GTATTCAATTAATAAAAATT+AGG | - | chr8.3:82313874-82313893 | MS.gene068697:intron | 10.0% |
| !!! | ATTTTTTTATGATATGATAT+TGG | - | chr8.3:82311917-82311936 | MS.gene068697:intron | 10.0% |
| !!! | TAACAATTAATTTTCTTTTT+TGG | - | chr8.3:82313625-82313644 | MS.gene068697:intron | 10.0% |
| !!! | TTTTTTTATGATATGATATT+GGG | - | chr8.3:82311918-82311937 | MS.gene068697:intron | 10.0% |
| !! | AAATTCGTAATTAACAATAA+AGG | - | chr8.3:82313977-82313996 | MS.gene068697:intron | 15.0% |
| !! | AACAATTTCATAATATCAAA+AGG | + | chr8.3:82313651-82313670 | None:intergenic | 15.0% |
| !! | AATTCGTAATTAACAATAAA+GGG | - | chr8.3:82313978-82313997 | MS.gene068697:intron | 15.0% |
| !! | ACAGAAAATTATTAATGATT+AGG | - | chr8.3:82312330-82312349 | MS.gene068697:intron | 15.0% |
| !! | AGATAAGAAAATATTAGTAT+CGG | + | chr8.3:82314257-82314276 | None:intergenic | 15.0% |
| !! | GCTTGATATATATATATAAT+TGG | + | chr8.3:82312774-82312793 | None:intergenic | 15.0% |
| !! | TTGTTAATTACCTTAAAATA+AGG | + | chr8.3:82312151-82312170 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTTTCTAACTTA+CGG | - | chr8.3:82314031-82314050 | MS.gene068697:intron | 15.0% |
| !!! | AATTTATTGAAAGTATAAAC+AGG | + | chr8.3:82313813-82313832 | None:intergenic | 15.0% |
| !!! | ATATACTCTTTTTGTTTTAT+AGG | + | chr8.3:82312964-82312983 | None:intergenic | 15.0% |
| !!! | ATTTTTCTTTTGAATTTTAG+AGG | + | chr8.3:82313376-82313395 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTGTGATGTT+CGG | - | chr8.3:82312353-82312372 | MS.gene068697:intron | 15.0% |
| !!! | CTTTTAACCTTAATATTTAT+TGG | - | chr8.3:82314697-82314716 | MS.gene068697:CDS | 15.0% |
| !!! | GTATTCAATTAATTTTTTGA+GGG | - | chr8.3:82313848-82313867 | MS.gene068697:intron | 15.0% |
| !!! | TAATTGTTAAAATTGTTTTC+TGG | + | chr8.3:82313614-82313633 | None:intergenic | 15.0% |
| !!! | TGCATTTTCTAATTTTATTA+CGG | - | chr8.3:82313081-82313100 | MS.gene068697:intron | 15.0% |
| !!! | TGTATTCAATTAATTTTTTG+AGG | - | chr8.3:82313847-82313866 | MS.gene068697:intron | 15.0% |
| !!! | TGTTAACTCTAAAATAAAAT+AGG | + | chr8.3:82312816-82312835 | None:intergenic | 15.0% |
| !!! | TTTTATTATATGTTAGACTT+GGG | - | chr8.3:82311881-82311900 | MS.gene068697:intron | 15.0% |
| !!! | TTTTTATTATATGTTAGACT+TGG | - | chr8.3:82311880-82311899 | MS.gene068697:intron | 15.0% |
| !! | AATTAATTATGAAGATTGCA+TGG | + | chr8.3:82313771-82313790 | None:intergenic | 20.0% |
| !! | ATTATAAAGCTAAGAGATTT+GGG | - | chr8.3:82311833-82311852 | MS.gene068697:intron | 20.0% |
| !! | ATTCGTAATTAACAATAAAG+GGG | - | chr8.3:82313979-82313998 | MS.gene068697:intron | 20.0% |
| !! | CAAAACTTACTCATTATATT+TGG | + | chr8.3:82313724-82313743 | None:intergenic | 20.0% |
| !! | TATTATAAAGCTAAGAGATT+TGG | - | chr8.3:82311832-82311851 | MS.gene068697:intron | 20.0% |
| !! | TTATAACAATGATATTTGTG+TGG | - | chr8.3:82312455-82312474 | MS.gene068697:intron | 20.0% |
| !! | TTTATTATATGTTAGACTTG+GGG | - | chr8.3:82311882-82311901 | MS.gene068697:intron | 20.0% |
| !!! | AAGAGTATATTTAATTGACT+TGG | - | chr8.3:82312974-82312993 | MS.gene068697:intron | 20.0% |
| !!! | AATCTCTTAGCTTTATAATA+AGG | + | chr8.3:82311832-82311851 | None:intergenic | 20.0% |
| !!! | ACAGGTTTAATTTTTTTTGA+AGG | + | chr8.3:82313795-82313814 | None:intergenic | 20.0% |
| !!! | ACCTTAATATTTATTGGTTT+TGG | - | chr8.3:82314703-82314722 | MS.gene068697:CDS | 20.0% |
| !!! | ACTCCTACATTTTTTTTTAA+GGG | + | chr8.3:82312514-82312533 | None:intergenic | 20.0% |
| !!! | AGGTGTTTTATTTTATTTGA+GGG | + | chr8.3:82313356-82313375 | None:intergenic | 20.0% |
| !!! | ATATATCCACATTTTCTATT+GGG | - | chr8.3:82313166-82313185 | MS.gene068697:intron | 20.0% |
| !!! | CATAATAAAAACACTTTTAG+AGG | - | chr8.3:82314317-82314336 | MS.gene068697:CDS | 20.0% |
| !!! | CTCTAAAAGTGTTTTTATTA+TGG | + | chr8.3:82314319-82314338 | None:intergenic | 20.0% |
| !!! | GAAATTAAGTTGATTAATGA+TGG | - | chr8.3:82314665-82314684 | MS.gene068697:CDS | 20.0% |
| !!! | GATTTGGTTAAAATAATACA+AGG | + | chr8.3:82312921-82312940 | None:intergenic | 20.0% |
| !!! | TACTCCTACATTTTTTTTTA+AGG | + | chr8.3:82312515-82312534 | None:intergenic | 20.0% |
| !!! | TATTGGGATATTTTTTGTAT+TGG | - | chr8.3:82313182-82313201 | MS.gene068697:intron | 20.0% |
| !!! | TTTTTTTTTTTGTGATGTTC+GGG | - | chr8.3:82312354-82312373 | MS.gene068697:intron | 20.0% |
| ! | AAAAAAAAATGTAGGAGTAG+TGG | - | chr8.3:82312516-82312535 | MS.gene068697:intron | 25.0% |
| ! | AAAAGGTTCAATTAACTTTG+AGG | - | chr8.3:82313901-82313920 | MS.gene068697:intron | 25.0% |
| ! | AAAGGTTCAATTAACTTTGA+GGG | - | chr8.3:82313902-82313921 | MS.gene068697:intron | 25.0% |
| ! | AAATATCCCAATAGAAAATG+TGG | + | chr8.3:82313175-82313194 | None:intergenic | 25.0% |
| ! | AATTTCACTCGTTAGTTAAA+TGG | - | chr8.3:82313242-82313261 | MS.gene068697:intron | 25.0% |
| ! | ACAGATAACCATACTAAAAT+CGG | + | chr8.3:82312616-82312635 | None:intergenic | 25.0% |
| ! | ATGAAATTGTTGCATATAAC+TGG | - | chr8.3:82313660-82313679 | MS.gene068697:intron | 25.0% |
| ! | CTTGTTTGTAAAAGAAAGTT+TGG | - | chr8.3:82313576-82313595 | MS.gene068697:intron | 25.0% |
| ! | GAAACTAAAAAAATGCGTAA+TGG | - | chr8.3:82313450-82313469 | MS.gene068697:intron | 25.0% |
| ! | GATGAATGAATGATAGTTTA+TGG | - | chr8.3:82314539-82314558 | MS.gene068697:intron | 25.0% |
| ! | GCCAAAACCAATAAATATTA+AGG | + | chr8.3:82314707-82314726 | None:intergenic | 25.0% |
| ! | TACGAAAAATTATCATTCTC+TGG | - | chr8.3:82314390-82314409 | MS.gene068697:CDS | 25.0% |
| ! | TATCGAATAAACCAACAATT+TGG | + | chr8.3:82314599-82314618 | None:intergenic | 25.0% |
| ! | TCATTGTTATAAAAAGATCC+TGG | + | chr8.3:82312447-82312466 | None:intergenic | 25.0% |
| ! | TGTCCCTTAAAAAAAAATGT+AGG | - | chr8.3:82312508-82312527 | MS.gene068697:intron | 25.0% |
| ! | TTATTGTTCTGATACTAATG+CGG | + | chr8.3:82312546-82312565 | None:intergenic | 25.0% |
| ! | TTCGTAATTAACAATAAAGG+GGG | - | chr8.3:82313980-82313999 | MS.gene068697:intron | 25.0% |
| ! | TTGTTTATTGACCAAATTGT+TGG | - | chr8.3:82314585-82314604 | MS.gene068697:intron | 25.0% |
| !! | ATTCAAAGTGTTCTTAGTAA+CGG | - | chr8.3:82312052-82312071 | MS.gene068697:intron | 25.0% |
| !! | CATATATCCACATTTTCTAT+TGG | - | chr8.3:82313165-82313184 | MS.gene068697:intron | 25.0% |
| !! | TTTAAAACGTTGATAGACAA+AGG | - | chr8.3:82312029-82312048 | MS.gene068697:intron | 25.0% |
| !! | TTTTATGATATGATATTGGG+TGG | - | chr8.3:82311921-82311940 | MS.gene068697:intron | 25.0% |
| !!! | GAGGTGTTTTATTTTATTTG+AGG | + | chr8.3:82313357-82313376 | None:intergenic | 25.0% |
| !!! | GGTGTTTTATTTTATTTGAG+GGG | + | chr8.3:82313355-82313374 | None:intergenic | 25.0% |
| !!! | TAATATTTATTGGTTTTGGC+AGG | - | chr8.3:82314707-82314726 | MS.gene068697:CDS | 25.0% |
| !!! | TTTTATTTTATTTGAGGGGA+GGG | + | chr8.3:82313351-82313370 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGTGATGTTCG+GGG | - | chr8.3:82312355-82312374 | MS.gene068697:intron | 25.0% |
| AAGACGAAAAGTAAATGAAG+AGG | + | chr8.3:82314178-82314197 | None:intergenic | 30.0% | |
| AATTAACAATAAAGGGGGAA+AGG | - | chr8.3:82313985-82314004 | MS.gene068697:intron | 30.0% | |
| ACAAAAACTGTTGTACCAAA+AGG | + | chr8.3:82312216-82312235 | None:intergenic | 30.0% | |
| ACTAAAAAAATGCGTAATGG+AGG | - | chr8.3:82313453-82313472 | MS.gene068697:intron | 30.0% | |
| ACTAACGAGTGAAATTAACA+AGG | + | chr8.3:82313238-82313257 | None:intergenic | 30.0% | |
| ATATTAGACATTGGATTTGG+AGG | + | chr8.3:82312682-82312701 | None:intergenic | 30.0% | |
| ATTAATTGAGTACTCGTTCT+TGG | - | chr8.3:82313935-82313954 | MS.gene068697:intron | 30.0% | |
| ATTACCTTAAAATAAGGCGT+TGG | + | chr8.3:82312145-82312164 | None:intergenic | 30.0% | |
| CAGAACAATAATAATCTCCA+TGG | - | chr8.3:82312555-82312574 | MS.gene068697:intron | 30.0% | |
| CATGTTGAGAATTACATGAT+TGG | - | chr8.3:82311670-82311689 | MS.gene068697:CDS | 30.0% | |
| CATTGATGAACATCTTACAT+TGG | + | chr8.3:82314225-82314244 | None:intergenic | 30.0% | |
| GACAATGCATAATTTATGCA+AGG | + | chr8.3:82312394-82312413 | None:intergenic | 30.0% | |
| GACATATTAGACATTGGATT+TGG | + | chr8.3:82312685-82312704 | None:intergenic | 30.0% | |
| TAAACAATCTTAGTACCACA+GGG | + | chr8.3:82312013-82312032 | None:intergenic | 30.0% | |
| TATAGAATATGGGGAAATGT+AGG | - | chr8.3:82314802-82314821 | MS.gene068697:CDS | 30.0% | |
| TGAACATCTTACATTGGTAT+TGG | + | chr8.3:82314219-82314238 | None:intergenic | 30.0% | |
| TTAAACAATCTTAGTACCAC+AGG | + | chr8.3:82312014-82312033 | None:intergenic | 30.0% | |
| TTAATTGAGTACTCGTTCTT+GGG | - | chr8.3:82313936-82313955 | MS.gene068697:intron | 30.0% | |
| TTGATTAATGATGGTTGTGA+AGG | - | chr8.3:82314674-82314693 | MS.gene068697:CDS | 30.0% | |
| TTTCACTAAGTGAAGGAATT+TGG | + | chr8.3:82313294-82313313 | None:intergenic | 30.0% | |
| ! | AATGAAGTGTGCTGATAAAA+TGG | - | chr8.3:82314622-82314641 | MS.gene068697:CDS | 30.0% |
| ! | AATGCTAATGCTTTTGACAA+TGG | + | chr8.3:82313054-82313073 | None:intergenic | 30.0% |
| ! | TCAATTAACTTTGAGGGAAA+AGG | - | chr8.3:82313908-82313927 | MS.gene068697:intron | 30.0% |
| ! | TCTAATTTTATTACGGCTAG+TGG | - | chr8.3:82313088-82313107 | MS.gene068697:intron | 30.0% |
| ! | TGAAATACAAGTCATCGATT+CGG | - | chr8.3:82314758-82314777 | MS.gene068697:CDS | 30.0% |
| ! | TTCAAAGTGTTCTTAGTAAC+GGG | - | chr8.3:82312053-82312072 | MS.gene068697:intron | 30.0% |
| ! | TTTTCACGTCAAAAACAAGA+AGG | - | chr8.3:82313498-82313517 | MS.gene068697:intron | 30.0% |
| !! | GTATATTTAATTGACTTGGC+CGG | - | chr8.3:82312978-82312997 | MS.gene068697:intron | 30.0% |
| !! | TCTTCATTTACTTTTCGTCT+TGG | - | chr8.3:82314177-82314196 | MS.gene068697:intron | 30.0% |
| !! | TTGTTGGAAGTTGATATGTA+GGG | - | chr8.3:82313002-82313021 | MS.gene068697:intron | 30.0% |
| !! | TTTGAAAGCCGATTTTAGTA+TGG | - | chr8.3:82312605-82312624 | MS.gene068697:intron | 30.0% |
| !! | TTTGTTGGAAGTTGATATGT+AGG | - | chr8.3:82313001-82313020 | MS.gene068697:intron | 30.0% |
| !!! | GTTTTATTTTATTTGAGGGG+AGG | + | chr8.3:82313352-82313371 | None:intergenic | 30.0% |
| !!! | TTTATTTTATTTGAGGGGAG+GGG | + | chr8.3:82313350-82313369 | None:intergenic | 30.0% |
| !!! | TTTTTTGTATTGGACGACTT+CGG | - | chr8.3:82313192-82313211 | MS.gene068697:intron | 30.0% |
| AAAACATGTGGCGTAATTGA+TGG | - | chr8.3:82312582-82312601 | MS.gene068697:intron | 35.0% | |
| AAATGCAGTACATAGGATTG+GGG | + | chr8.3:82314882-82314901 | None:intergenic | 35.0% | |
| AACACTTGCCAAAATCACTA+CGG | - | chr8.3:82312088-82312107 | MS.gene068697:intron | 35.0% | |
| AACTCTCTTTCACTAAGTGA+AGG | + | chr8.3:82313301-82313320 | None:intergenic | 35.0% | |
| AATGTTGTCTTGTCATGAGA+AGG | - | chr8.3:82313137-82313156 | MS.gene068697:intron | 35.0% | |
| ACAAGACAACATTGCATTGT+TGG | + | chr8.3:82313130-82313149 | None:intergenic | 35.0% | |
| AGAAATGCAGTACATAGGAT+TGG | + | chr8.3:82314884-82314903 | None:intergenic | 35.0% | |
| CACAATTAAACATTGCGAGT+TGG | + | chr8.3:82314368-82314387 | None:intergenic | 35.0% | |
| CATATCAACTTCCAACAAAC+CGG | + | chr8.3:82313000-82313019 | None:intergenic | 35.0% | |
| GAAATGCAGTACATAGGATT+GGG | + | chr8.3:82314883-82314902 | None:intergenic | 35.0% | |
| GTTGAGAATTACATGATTGG+TGG | - | chr8.3:82311673-82311692 | MS.gene068697:CDS | 35.0% | |
| TACCAACTGATATAAGCTCA+CGG | - | chr8.3:82312416-82312435 | MS.gene068697:intron | 35.0% | |
| TATATAATTTAGCACGCGCT+AGG | - | chr8.3:82312300-82312319 | MS.gene068697:intron | 35.0% | |
| TATGTATGTTGTCCAAGTCA+AGG | - | chr8.3:82314116-82314135 | MS.gene068697:intron | 35.0% | |
| TCCAATGTCTAATATGTCGA+CGG | - | chr8.3:82312687-82312706 | MS.gene068697:intron | 35.0% | |
| TGAGTAGTAGAAGTAGAAAG+AGG | + | chr8.3:82311760-82311779 | None:intergenic | 35.0% | |
| TTGCATAACCAAGGATTCAT+CGG | - | chr8.3:82312116-82312135 | MS.gene068697:intron | 35.0% | |
| TTTGTGATATAAGCCTCGTT+AGG | - | chr8.3:82312231-82312250 | MS.gene068697:intron | 35.0% | |
| ! | AAGAGGAAGGGTATAGAATA+TGG | - | chr8.3:82314791-82314810 | MS.gene068697:CDS | 35.0% |
| ! | AGAGGAAGGGTATAGAATAT+GGG | - | chr8.3:82314792-82314811 | MS.gene068697:CDS | 35.0% |
| ! | ATAATTAGCTAGCGACCTTT+TGG | - | chr8.3:82312198-82312217 | MS.gene068697:intron | 35.0% |
| ! | CAAATTGTCCGTAGTGATTT+TGG | + | chr8.3:82312099-82312118 | None:intergenic | 35.0% |
| ! | GTGTGCTGATAAAATGGATT+AGG | - | chr8.3:82314628-82314647 | MS.gene068697:CDS | 35.0% |
| ! | TAAGTGAAGGAATTTGGAGT+TGG | + | chr8.3:82313288-82313307 | None:intergenic | 35.0% |
| ! | TCATCAAGATGCTTGGATTT+TGG | - | chr8.3:82311777-82311796 | MS.gene068697:intron | 35.0% |
| ! | TGAGCTTATATCAGTTGGTA+AGG | + | chr8.3:82312416-82312435 | None:intergenic | 35.0% |
| ! | TTCAAGGCATGGATTAATCA+AGG | - | chr8.3:82311972-82311991 | MS.gene068697:intron | 35.0% |
| ! | TTTGCATTGATACCTTGACT+TGG | + | chr8.3:82314131-82314150 | None:intergenic | 35.0% |
| !! | TTGATGATGATGAGAGGTAT+GGG | - | chr8.3:82311572-82311591 | MS.gene068697:CDS | 35.0% |
| ACACAATTTCATCCACGATG+AGG | + | chr8.3:82311720-82311739 | None:intergenic | 40.0% | |
| ACCAACTGATATAAGCTCAC+GGG | - | chr8.3:82312417-82312436 | MS.gene068697:intron | 40.0% | |
| ACGGACAATTTGCATAACCA+AGG | - | chr8.3:82312107-82312126 | MS.gene068697:intron | 40.0% | |
| AGACAACATTGCATTGTTGG+AGG | + | chr8.3:82313127-82313146 | None:intergenic | 40.0% | |
| CAAACAATAATGTGCGTCCT+TGG | - | chr8.3:82311620-82311639 | MS.gene068697:CDS | 40.0% | |
| CCAATGTCTAATATGTCGAC+GGG | - | chr8.3:82312688-82312707 | MS.gene068697:intron | 40.0% | |
| CTACTACTCATCAAGATGCT+TGG | - | chr8.3:82311770-82311789 | MS.gene068697:intron | 40.0% | |
| GATATAAGCCTCGTTAGGTT+AGG | - | chr8.3:82312236-82312255 | MS.gene068697:intron | 40.0% | |
| GCGGAGAAACTTAGAAAATG+TGG | - | chr8.3:82313426-82313445 | MS.gene068697:intron | 40.0% | |
| GTAAGCAAGCATGCCAAATT+TGG | + | chr8.3:82314095-82314114 | None:intergenic | 40.0% | |
| TGAACATCGCCGAATCAAAT+GGG | + | chr8.3:82311956-82311975 | None:intergenic | 40.0% | |
| TTGAACATCGCCGAATCAAA+TGG | + | chr8.3:82311957-82311976 | None:intergenic | 40.0% | |
| TTGTCATGAAAACGTTCCCT+AGG | + | chr8.3:82312278-82312297 | None:intergenic | 40.0% | |
| ! | GAGGAAGGGTATAGAATATG+GGG | - | chr8.3:82314793-82314812 | MS.gene068697:CDS | 40.0% |
| ! | TTATTACGGCTAGTGGATAC+AGG | - | chr8.3:82313095-82313114 | MS.gene068697:intron | 40.0% |
| !! | ATACAAGTCATCGATTCGGA+AGG | - | chr8.3:82314762-82314781 | MS.gene068697:CDS | 40.0% |
| !! | ATTTGATTCGGCGATGTTCA+AGG | - | chr8.3:82311956-82311975 | MS.gene068697:intron | 40.0% |
| !! | GTTGATGATGATGAGAGGTA+TGG | - | chr8.3:82311571-82311590 | MS.gene068697:CDS | 40.0% |
| !! | TTAGTAACGGGTAGATACGA+AGG | - | chr8.3:82312065-82312084 | MS.gene068697:intron | 40.0% |
| !!! | GCTACCAACGCCTTATTTTA+AGG | - | chr8.3:82312138-82312157 | MS.gene068697:intron | 40.0% |
| ACATGCTTGTAGCAACGAAG+TGG | + | chr8.3:82311655-82311674 | None:intergenic | 45.0% | |
| ACTATCCACCTAACCTAACG+AGG | + | chr8.3:82312247-82312266 | None:intergenic | 45.0% | |
| AGACATTGGATTTGGAGGAG+TGG | + | chr8.3:82312677-82312696 | None:intergenic | 45.0% | |
| ATAAGCCTCGTTAGGTTAGG+TGG | - | chr8.3:82312239-82312258 | MS.gene068697:intron | 45.0% | |
| CAGATGCGACCCATTTGATT+CGG | - | chr8.3:82311944-82311963 | MS.gene068697:intron | 45.0% | |
| CATGCTTGTAGCAACGAAGT+GGG | + | chr8.3:82311654-82311673 | None:intergenic | 45.0% | |
| CCCGTCGACATATTAGACAT+TGG | + | chr8.3:82312691-82312710 | None:intergenic | 45.0% | |
| CTCACTGAGCACTCTTAATG+CGG | - | chr8.3:82313407-82313426 | MS.gene068697:intron | 45.0% | |
| CTCCATGGAGACAAAACATG+TGG | - | chr8.3:82312570-82312589 | MS.gene068697:intron | 45.0% | |
| GATTCGGAAGGAGATTGAAG+AGG | - | chr8.3:82314774-82314793 | MS.gene068697:CDS | 45.0% | |
| GCTGCTGACAATGCCAAATT+TGG | - | chr8.3:82314079-82314098 | MS.gene068697:intron | 45.0% | |
| GGAAGGAGATTGAAGAGGAA+GGG | - | chr8.3:82314779-82314798 | MS.gene068697:CDS | 45.0% | |
| TCCCGTGAGCTTATATCAGT+TGG | + | chr8.3:82312421-82312440 | None:intergenic | 45.0% | |
| TGGATAGTGACTGCTACCTA+GGG | - | chr8.3:82312259-82312278 | MS.gene068697:intron | 45.0% | |
| TTAGTACCACAGGGTTTGCA+GGG | + | chr8.3:82312004-82312023 | None:intergenic | 45.0% | |
| ! | AGATGCTTGGATTTTGGACG+TGG | - | chr8.3:82311783-82311802 | MS.gene068697:intron | 45.0% |
| ! | GGCAGGAGTGTGAAATACAA+AGG | - | chr8.3:82314724-82314743 | MS.gene068697:CDS | 45.0% |
| ! | TGCGTAATGGAGGAACTTCA+TGG | - | chr8.3:82313463-82313482 | MS.gene068697:intron | 45.0% |
| !! | AATTGACTTGGCCGGTTTGT+TGG | - | chr8.3:82312986-82313005 | MS.gene068697:intron | 45.0% |
| !! | TGGTGGTTGATGATGATGAG+AGG | - | chr8.3:82311566-82311585 | MS.gene068697:CDS | 45.0% |
| !!! | TTTTATTTATTTTAAAGATT+TGG | + | chr8.3:82312937-82312956 | None:intergenic | 5.0% |
| ATTCGGCGATGTTCAAGGCA+TGG | - | chr8.3:82311961-82311980 | MS.gene068697:intron | 50.0% | |
| CGGAAGGAGATTGAAGAGGA+AGG | - | chr8.3:82314778-82314797 | MS.gene068697:CDS | 50.0% | |
| CTTAGTACCACAGGGTTTGC+AGG | + | chr8.3:82312005-82312024 | None:intergenic | 50.0% | |
| GCATGACATGAACCTCATCG+TGG | - | chr8.3:82311705-82311724 | MS.gene068697:CDS | 50.0% | |
| GTGGATAGTGACTGCTACCT+AGG | - | chr8.3:82312258-82312277 | MS.gene068697:intron | 50.0% | |
| TATAAGCTCACGGGAACACC+AGG | - | chr8.3:82312426-82312445 | MS.gene068697:intron | 50.0% | |
| ! | CGCCACATGTTTTGTCTCCA+TGG | + | chr8.3:82312575-82312594 | None:intergenic | 50.0% |
| ! | GGGGAAAGGCACAATAGACT+TGG | - | chr8.3:82313999-82314018 | MS.gene068697:intron | 50.0% |
| !! | ACCAGTGGACTGATCTCCAA+GGG | - | chr8.3:82314827-82314846 | MS.gene068697:CDS | 50.0% |
| !! | GATCTCCAAGGGGAGTGTTT+GGG | - | chr8.3:82314838-82314857 | MS.gene068697:CDS | 50.0% |
| !! | GTTGGTAGCCGATGAATCCT+TGG | + | chr8.3:82312127-82312146 | None:intergenic | 50.0% |
| !! | TGATCTCCAAGGGGAGTGTT+TGG | - | chr8.3:82314837-82314856 | MS.gene068697:CDS | 50.0% |
| AATGTGCCCTGCAAACCCTG+TGG | - | chr8.3:82311995-82312014 | MS.gene068697:intron | 55.0% | |
| CGAAGTGGGACTGTCTTCCA+AGG | + | chr8.3:82311640-82311659 | None:intergenic | 55.0% | |
| GATTGCCCAAACACTCCCCT+TGG | + | chr8.3:82314846-82314865 | None:intergenic | 55.0% | |
| GGGGAAATGTAGGAGACCAG+TGG | - | chr8.3:82314812-82314831 | MS.gene068697:CDS | 55.0% | |
| ! | ATGAGAGGTATGGGCTGAGC+TGG | - | chr8.3:82311581-82311600 | MS.gene068697:CDS | 55.0% |
| !! | CCAGTGGACTGATCTCCAAG+GGG | - | chr8.3:82314828-82314847 | MS.gene068697:CDS | 55.0% |
| !! | GACCAGTGGACTGATCTCCA+AGG | - | chr8.3:82314826-82314845 | MS.gene068697:CDS | 55.0% |
| CCCCTTGGAGATCAGTCCAC+TGG | + | chr8.3:82314831-82314850 | None:intergenic | 60.0% | |
| GCTGAGCTGGAGGTTGGCAA+TGG | - | chr8.3:82311594-82311613 | MS.gene068697:CDS | 60.0% | |
| ! | AGAGGTATGGGCTGAGCTGG+AGG | - | chr8.3:82311584-82311603 | MS.gene068697:CDS | 60.0% |
| ! | GTATGGGCTGAGCTGGAGGT+TGG | - | chr8.3:82311588-82311607 | MS.gene068697:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 82311562 | 82314906 | 82311562 | ID=MS.gene068697 |
| chr8.3 | mRNA | 82311562 | 82314906 | 82311562 | ID=MS.gene068697.t1;Parent=MS.gene068697 |
| chr8.3 | exon | 82314614 | 82314906 | 82314614 | ID=MS.gene068697.t1.exon1;Parent=MS.gene068697.t1 |
| chr8.3 | CDS | 82314614 | 82314906 | 82314614 | ID=cds.MS.gene068697.t1;Parent=MS.gene068697.t1 |
| chr8.3 | exon | 82314309 | 82314521 | 82314309 | ID=MS.gene068697.t1.exon2;Parent=MS.gene068697.t1 |
| chr8.3 | CDS | 82314309 | 82314521 | 82314309 | ID=cds.MS.gene068697.t1;Parent=MS.gene068697.t1 |
| chr8.3 | exon | 82311562 | 82311739 | 82311562 | ID=MS.gene068697.t1.exon3;Parent=MS.gene068697.t1 |
| chr8.3 | CDS | 82311562 | 82311739 | 82311562 | ID=cds.MS.gene068697.t1;Parent=MS.gene068697.t1 |
| Gene Sequence |
| Protein sequence |
