Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054626.t1 | XP_003603014.1 | 97.4 | 386 | 10 | 0 | 1 | 386 | 1 | 386 | 3.90E-216 | 761.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054626.t1 | O48723 | 65.1 | 372 | 129 | 1 | 11 | 382 | 10 | 380 | 3.6e-138 | 493.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054626.t1 | G7J6A8 | 97.4 | 386 | 10 | 0 | 1 | 386 | 1 | 386 | 2.8e-216 | 761.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054626 | MS.gene068697 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene054626 | MS.gene24359 | 0.812477 | 4.16E-51 | -1.69E-46 |
| MS.gene054626 | MS.gene27711 | 0.820612 | 6.26E-53 | -1.69E-46 |
| MS.gene054626 | MS.gene32673 | 0.808798 | 2.59E-50 | -1.69E-46 |
| MS.gene054626 | MS.gene37262 | 0.815805 | 7.66E-52 | -1.69E-46 |
| MS.gene054626 | MS.gene37609 | 0.844368 | 7.89E-59 | -1.69E-46 |
| MS.gene054626 | MS.gene38732 | 0.9239 | 1.44E-89 | -1.69E-46 |
| MS.gene054626 | MS.gene39782 | 0.842051 | 3.27E-58 | -1.69E-46 |
| MS.gene054626 | MS.gene47031 | 0.8438 | 1.12E-58 | -1.69E-46 |
| MS.gene054626 | MS.gene51514 | 0.800411 | 1.46E-48 | -1.69E-46 |
| MS.gene054626 | MS.gene52226 | 0.801059 | 1.08E-48 | -1.69E-46 |
| MS.gene054626 | MS.gene55036 | 0.8012 | 1.01E-48 | -1.69E-46 |
| MS.gene054626 | MS.gene55469 | 0.805728 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054626.t1 | MTR_3g101400 | 97.409 | 386 | 10 | 0 | 1 | 386 | 1 | 386 | 0.0 | 780 |
| MS.gene054626.t1 | MTR_3g101410 | 90.415 | 386 | 37 | 0 | 1 | 386 | 1 | 386 | 0.0 | 706 |
| MS.gene054626.t1 | MTR_1g019940 | 77.922 | 385 | 83 | 2 | 4 | 386 | 5 | 389 | 0.0 | 632 |
| MS.gene054626.t1 | MTR_1g019940 | 77.662 | 385 | 82 | 3 | 4 | 386 | 5 | 387 | 0.0 | 624 |
| MS.gene054626.t1 | MTR_1g019940 | 77.407 | 270 | 60 | 1 | 118 | 386 | 1 | 270 | 1.55e-154 | 446 |
| MS.gene054626.t1 | MTR_5g017670 | 55.325 | 385 | 164 | 4 | 4 | 386 | 3 | 381 | 3.41e-148 | 434 |
| MS.gene054626.t1 | MTR_5g017680 | 56.452 | 372 | 158 | 3 | 18 | 386 | 8 | 378 | 4.12e-148 | 434 |
| MS.gene054626.t1 | MTR_8g007040 | 44.588 | 388 | 182 | 11 | 10 | 386 | 22 | 387 | 9.94e-95 | 298 |
| MS.gene054626.t1 | MTR_8g007090 | 43.445 | 389 | 191 | 11 | 10 | 389 | 22 | 390 | 1.29e-91 | 290 |
| MS.gene054626.t1 | MTR_8g007095 | 43.188 | 389 | 192 | 11 | 10 | 389 | 22 | 390 | 1.82e-91 | 289 |
| MS.gene054626.t1 | MTR_8g007140 | 46.597 | 382 | 174 | 7 | 10 | 389 | 23 | 376 | 9.64e-88 | 279 |
| MS.gene054626.t1 | MTR_8g007125 | 43.947 | 380 | 184 | 12 | 10 | 382 | 22 | 379 | 1.61e-78 | 255 |
| MS.gene054626.t1 | MTR_8g007065 | 40.674 | 386 | 204 | 10 | 10 | 389 | 22 | 388 | 6.82e-78 | 254 |
| MS.gene054626.t1 | MTR_1g095165 | 29.491 | 373 | 228 | 14 | 20 | 378 | 75 | 426 | 5.30e-38 | 147 |
| MS.gene054626.t1 | MTR_7g094940 | 26.420 | 352 | 206 | 10 | 22 | 357 | 32 | 346 | 8.84e-30 | 121 |
| MS.gene054626.t1 | MTR_1g072190 | 25.959 | 339 | 216 | 11 | 22 | 355 | 32 | 340 | 3.21e-27 | 114 |
| MS.gene054626.t1 | MTR_2g029510 | 28.438 | 320 | 183 | 12 | 12 | 327 | 61 | 338 | 6.05e-21 | 96.3 |
| MS.gene054626.t1 | MTR_0368s0010 | 27.197 | 239 | 149 | 10 | 142 | 376 | 43 | 260 | 1.86e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054626.t1 | AT2G26560 | 65.054 | 372 | 129 | 1 | 11 | 382 | 10 | 380 | 1.31e-174 | 502 |
| MS.gene054626.t1 | AT4G37070 | 57.867 | 375 | 158 | 0 | 12 | 386 | 11 | 385 | 1.39e-153 | 449 |
| MS.gene054626.t1 | AT4G37070 | 58.065 | 372 | 156 | 0 | 12 | 383 | 11 | 382 | 3.02e-153 | 446 |
| MS.gene054626.t1 | AT4G37070 | 58.065 | 372 | 156 | 0 | 12 | 383 | 11 | 382 | 3.02e-153 | 446 |
| MS.gene054626.t1 | AT4G37060 | 56.684 | 374 | 162 | 0 | 13 | 386 | 12 | 385 | 4.48e-150 | 439 |
| MS.gene054626.t1 | AT4G37070 | 55.914 | 372 | 153 | 1 | 12 | 383 | 11 | 371 | 3.91e-144 | 423 |
| MS.gene054626.t1 | AT4G37060 | 52.346 | 405 | 162 | 1 | 13 | 386 | 12 | 416 | 2.48e-143 | 424 |
| MS.gene054626.t1 | AT4G37050 | 56.545 | 382 | 158 | 2 | 13 | 386 | 28 | 409 | 5.13e-141 | 417 |
| MS.gene054626.t1 | AT5G43590 | 51.979 | 379 | 171 | 5 | 12 | 386 | 6 | 377 | 7.43e-116 | 351 |
| MS.gene054626.t1 | AT5G43590 | 51.979 | 379 | 171 | 5 | 12 | 386 | 73 | 444 | 6.21e-115 | 351 |
| MS.gene054626.t1 | AT2G39220 | 30.458 | 371 | 226 | 15 | 20 | 382 | 108 | 454 | 3.74e-36 | 142 |
| MS.gene054626.t1 | AT3G54950 | 29.014 | 355 | 222 | 11 | 20 | 369 | 98 | 427 | 1.55e-35 | 140 |
| MS.gene054626.t1 | AT4G29800 | 28.288 | 403 | 249 | 16 | 20 | 406 | 121 | 499 | 1.43e-32 | 132 |
| MS.gene054626.t1 | AT4G29800 | 28.218 | 404 | 249 | 16 | 20 | 406 | 121 | 500 | 2.32e-32 | 131 |
| MS.gene054626.t1 | AT3G63200 | 29.022 | 317 | 189 | 11 | 22 | 330 | 32 | 320 | 4.88e-31 | 125 |
Find 153 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAATCTTTCTCCAATT+TGG | 0.154529 | 3.4:-89354052 | None:intergenic |
| TGGACAATGTTCCAAGTAAA+AGG | 0.173001 | 3.4:-89352821 | None:intergenic |
| TTAGATAAACTTTGCCAAAT+TGG | 0.206887 | 3.4:+89354038 | MS.gene054626:CDS |
| GCATCGACGGTGGTGGTATT+AGG | 0.208767 | 3.4:+89352611 | MS.gene054626:CDS |
| ATGTTTGAGCCTATTGAAAA+TGG | 0.238787 | 3.4:+89354110 | MS.gene054626:CDS |
| CTGTTAGTATTGCTGTATTT+TGG | 0.244014 | 3.4:+89357303 | MS.gene054626:CDS |
| AATTATTGCTTAGGCTGATT+TGG | 0.248006 | 3.4:+89360043 | MS.gene054626:intron |
| GGCAGCAAAATGGGGTCTTT+TGG | 0.249313 | 3.4:+89353589 | MS.gene054626:CDS |
| ATTCAAAACTGGCAGCAAAA+TGG | 0.257627 | 3.4:+89353579 | MS.gene054626:CDS |
| TTATAAGATGAGAAAATAAT+TGG | 0.260902 | 3.4:-89353147 | None:intergenic |
| TTGACTAAAGATATCAATTA+AGG | 0.272567 | 3.4:-89353639 | None:intergenic |
| TATTTGTTGACTGGAGATTC+TGG | 0.290434 | 3.4:+89360378 | MS.gene054626:CDS |
| GCTGCTCCTACTTATCTTCC+TGG | 0.297373 | 3.4:+89353228 | MS.gene054626:CDS |
| ATTGAAGAAACCAGTATCTA+AGG | 0.307953 | 3.4:+89354070 | MS.gene054626:CDS |
| CATCGACGGTGGTGGTATTA+GGG | 0.320659 | 3.4:+89352612 | MS.gene054626:CDS |
| TTCAAAACTGGCAGCAAAAT+GGG | 0.322622 | 3.4:+89353580 | MS.gene054626:CDS |
| AGGTATTTCCCATCGTATTT+TGG | 0.327115 | 3.4:-89353030 | None:intergenic |
| GGTGGTGCGATCAGCCTTAT+TGG | 0.331587 | 3.4:-89356965 | None:intergenic |
| GAACTTATGCAGGCACTTGC+TGG | 0.336587 | 3.4:+89352972 | MS.gene054626:intron |
| TCTAAATTAACCTTAGATAC+TGG | 0.337016 | 3.4:-89354080 | None:intergenic |
| AGTGGACGTTGTTTATCATT+TGG | 0.339325 | 3.4:-89352775 | None:intergenic |
| GATTACTTTGATGTGATTAC+AGG | 0.344649 | 3.4:+89352712 | MS.gene054626:CDS |
| TAGTCAATCCTCTGGAGATA+TGG | 0.353427 | 3.4:+89353655 | MS.gene054626:CDS |
| GCTATATTCCATGGGTTTGA+TGG | 0.366448 | 3.4:-89353501 | None:intergenic |
| CATTGCTCAAGTTGTGGCTT+CGG | 0.367316 | 3.4:-89360967 | None:intergenic |
| CTGATGCTATGGTCAAATTC+TGG | 0.374965 | 3.4:+89360144 | MS.gene054626:CDS |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3.4:-89352663 | None:intergenic |
| ACAAAAGTTTGATTCAAAAC+TGG | 0.388763 | 3.4:+89353568 | MS.gene054626:CDS |
| GGCTCATCTCACCACCAATA+AGG | 0.390899 | 3.4:+89356951 | MS.gene054626:CDS |
| GTACAGTCCCTTCTGTATCT+TGG | 0.396391 | 3.4:-89353266 | None:intergenic |
| GTGTGGTTAGGGAGAAGCTT+GGG | 0.398981 | 3.4:+89353058 | MS.gene054626:CDS |
| AAACGTGGGGATCACAATAT+TGG | 0.404692 | 3.4:-89353106 | None:intergenic |
| AATACCTACACAGTGTGGTT+AGG | 0.406721 | 3.4:+89353046 | MS.gene054626:CDS |
| CAGGCACTTGCTGGGACTGG+TGG | 0.408008 | 3.4:+89352981 | MS.gene054626:intron |
| GCAAGTCTTGTCTCCTCCTC+AGG | 0.408827 | 3.4:+89360406 | MS.gene054626:CDS |
| AAGATGTAATTCATTATCAT+TGG | 0.414152 | 3.4:-89359716 | None:intergenic |
| GATGCCGAGTGTGAAAATTT+AGG | 0.414641 | 3.4:+89359538 | MS.gene054626:CDS |
| AGTTCCGCCGTTACGGTTAT+CGG | 0.421144 | 3.4:+89356895 | MS.gene054626:intron |
| TGTTTGAGCCTATTGAAAAT+GGG | 0.427789 | 3.4:+89354111 | MS.gene054626:CDS |
| TCTAAGGTTAATTTAGAGAA+TGG | 0.429460 | 3.4:+89354086 | MS.gene054626:CDS |
| GAAATTGTTCAAATCATTAA+CGG | 0.431351 | 3.4:+89353005 | MS.gene054626:CDS |
| CTAATAATCTCATTGGGCAC+TGG | 0.438749 | 3.4:+89353530 | MS.gene054626:CDS |
| AACTTATGCAGGCACTTGCT+GGG | 0.440494 | 3.4:+89352973 | MS.gene054626:intron |
| CAAATTCAGCCTCCCACCTA+TGG | 0.443188 | 3.4:+89352568 | MS.gene054626:CDS |
| AAATTGTTCAAATCATTAAC+GGG | 0.445917 | 3.4:+89353006 | MS.gene054626:CDS |
| TAGAAAACGGCTATATTCCA+TGG | 0.449347 | 3.4:-89353510 | None:intergenic |
| CGAAGAATATCTTGAGACTA+AGG | 0.451707 | 3.4:+89360112 | MS.gene054626:CDS |
| ATCTTGAGACTAAGGTCAAT+GGG | 0.461163 | 3.4:+89360120 | MS.gene054626:CDS |
| ATTGTCAAGATAATTACCTT+AGG | 0.462195 | 3.4:+89353714 | MS.gene054626:CDS |
| TTCAGTGACTATTTGTTGAC+TGG | 0.463460 | 3.4:+89360369 | MS.gene054626:intron |
| GGACAATGTTCCAAGTAAAA+GGG | 0.464623 | 3.4:-89352820 | None:intergenic |
| ACTGAATGGTGCTCGTGTAT+TGG | 0.472641 | 3.4:+89359667 | MS.gene054626:CDS |
| GATATCTTTAGTCAATCCTC+TGG | 0.480270 | 3.4:+89353647 | MS.gene054626:CDS |
| AGATAATTACCTTAGGATAC+AGG | 0.480809 | 3.4:+89353721 | MS.gene054626:CDS |
| AGGCACTTGCTGGGACTGGT+GGG | 0.481875 | 3.4:+89352982 | MS.gene054626:intron |
| ATGCAGGCACTTGCTGGGAC+TGG | 0.483803 | 3.4:+89352978 | MS.gene054626:intron |
| ATACCTACACAGTGTGGTTA+GGG | 0.485763 | 3.4:+89353047 | MS.gene054626:CDS |
| CGCACCACCGTCGCGGCTCG+TGG | 0.490875 | 3.4:+89356979 | MS.gene054626:CDS |
| CCAATGAGATTATTAGAAAA+CGG | 0.491994 | 3.4:-89353523 | None:intergenic |
| TATCTTGAGACTAAGGTCAA+TGG | 0.495796 | 3.4:+89360119 | MS.gene054626:CDS |
| TCAGCTCCGCCTTGATCTTG+TGG | 0.497784 | 3.4:-89359496 | None:intergenic |
| AGGAACTCGAGAATAGTTGC+GGG | 0.498265 | 3.4:-89352643 | None:intergenic |
| CGTGAGTTCAACCTCATTGA+TGG | 0.500018 | 3.4:+89353288 | MS.gene054626:CDS |
| TGACTAAAGATATCAATTAA+GGG | 0.500555 | 3.4:-89353638 | None:intergenic |
| TTGTAACCAGGAAGATAAGT+AGG | 0.501497 | 3.4:-89353234 | None:intergenic |
| TTGACTGGAGATTCTGGTGT+GGG | 0.507698 | 3.4:+89360384 | MS.gene054626:CDS |
| TCCGTACAGTTCCGCCGTTA+CGG | 0.511154 | 3.4:+89356888 | MS.gene054626:intron |
| CCAACCAAGAAGCTCTCAAA+AGG | 0.511212 | 3.4:+89354138 | MS.gene054626:CDS |
| TCGTTTCATTGCTCAAGTTG+TGG | 0.511353 | 3.4:-89360973 | None:intergenic |
| TTGCATGGATGCTCGACTCT+CGG | 0.512268 | 3.4:+89353185 | MS.gene054626:CDS |
| CTTCAATGATGGTGCAAACA+AGG | 0.512911 | 3.4:+89359752 | MS.gene054626:CDS |
| GCTTGAAGCAGCTTCAATGA+TGG | 0.513930 | 3.4:+89359741 | MS.gene054626:CDS |
| GGCACTTGCTGGGACTGGTG+GGG | 0.520089 | 3.4:+89352983 | MS.gene054626:intron |
| CGTCGCGGCTCGTGGACCAT+CGG | 0.529274 | 3.4:+89356987 | MS.gene054626:CDS |
| GTAAAAGGGCTTGATATCCT+TGG | 0.530283 | 3.4:-89352806 | None:intergenic |
| TTTGTATTACCTGTATCCTA+AGG | 0.533834 | 3.4:-89353730 | None:intergenic |
| GCTTAAGAAGGTGCTCTGCA+TGG | 0.544427 | 3.4:+89360166 | MS.gene054626:CDS |
| CTTGAGTAACAGTAGCAAGA+TGG | 0.544501 | 3.4:-89353685 | None:intergenic |
| GGTCAATGGGACTGATGCTA+TGG | 0.545259 | 3.4:+89360133 | MS.gene054626:CDS |
| GGTCAAATTCTGGCTTAAGA+AGG | 0.546632 | 3.4:+89360154 | MS.gene054626:CDS |
| CTTAAGAAGGTGCTCTGCAT+GGG | 0.547173 | 3.4:+89360167 | MS.gene054626:CDS |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3.4:-89352580 | None:intergenic |
| AATAGTCTGTAGGACTACTA+AGG | 0.549214 | 3.4:+89357370 | MS.gene054626:CDS |
| AGTCACTAAGTTTCCATAGG+TGG | 0.549310 | 3.4:-89352581 | None:intergenic |
| AAGTTACCTTAAAACACATC+AGG | 0.550607 | 3.4:-89359798 | None:intergenic |
| GATCAAGAAAGCCCCTTGCA+TGG | 0.552645 | 3.4:+89353170 | MS.gene054626:CDS |
| AGTCTCAAGATATTCTTCGT+TGG | 0.555986 | 3.4:-89360108 | None:intergenic |
| AATAGTCACTAAGTTTCCAT+AGG | 0.559064 | 3.4:-89352584 | None:intergenic |
| ATCAACTGAAGAATCTGTAC+CGG | 0.561415 | 3.4:-89353997 | None:intergenic |
| TCTTCGTTGGAAACAAGACT+AGG | 0.561491 | 3.4:-89360095 | None:intergenic |
| AGAAAACGGCTATATTCCAT+GGG | 0.563089 | 3.4:-89353509 | None:intergenic |
| GTGATTACAGGAACAAGTAC+AGG | 0.563901 | 3.4:+89352724 | MS.gene054626:CDS |
| ATCGACGGTGGTGGTATTAG+GGG | 0.564683 | 3.4:+89352613 | MS.gene054626:CDS |
| GAGAGTCGAGCATCCATGCA+AGG | 0.566902 | 3.4:-89353183 | None:intergenic |
| CGATGGTCCACGAGCCGCGA+CGG | 0.570871 | 3.4:-89356986 | None:intergenic |
| AAGATAAGTAGGAGCAGCAG+AGG | 0.572780 | 3.4:-89353223 | None:intergenic |
| AGAGTCGAGCATCCATGCAA+GGG | 0.575582 | 3.4:-89353182 | None:intergenic |
| TGGTGTTTGTGCAAATAATC+CGG | 0.582343 | 3.4:+89353311 | MS.gene054626:CDS |
| AATTAGACGGTGAATCTGCT+AGG | 0.587927 | 3.4:+89352683 | MS.gene054626:CDS |
| ATTCTAAGCATCGACGGTGG+TGG | 0.589977 | 3.4:+89352604 | MS.gene054626:CDS |
| CACAAACACCACCATCAATG+AGG | 0.592240 | 3.4:-89353299 | None:intergenic |
| CTTCGTTGGAAACAAGACTA+GGG | 0.594284 | 3.4:-89360094 | None:intergenic |
| GTTTGAGCCTATTGAAAATG+GGG | 0.597788 | 3.4:+89354112 | MS.gene054626:CDS |
| TTCAAGAACCAAGATACAGA+AGG | 0.598347 | 3.4:+89353258 | MS.gene054626:CDS |
| ATCATTTGGAGCACTTAACA+TGG | 0.599256 | 3.4:-89352761 | None:intergenic |
| ATGCAGGATGATACATTGAC+CGG | 0.600764 | 3.4:+89353978 | MS.gene054626:intron |
| GTGCAGAGGCAATAGTCTGT+AGG | 0.602096 | 3.4:+89357360 | MS.gene054626:CDS |
| TAACGGGACCAAAATACGAT+GGG | 0.602205 | 3.4:+89353022 | MS.gene054626:CDS |
| TCAAAACTGGCAGCAAAATG+GGG | 0.603239 | 3.4:+89353581 | MS.gene054626:CDS |
| GGTTATCGGCACCACCGTTG+TGG | 0.604654 | 3.4:+89356909 | MS.gene054626:CDS |
| AAGGAACTCGAGAATAGTTG+CGG | 0.605964 | 3.4:-89352644 | None:intergenic |
| AGCATACAGAGATGGTGCAG+AGG | 0.607292 | 3.4:+89357346 | MS.gene054626:CDS |
| AGTGTGGTTAGGGAGAAGCT+TGG | 0.607976 | 3.4:+89353057 | MS.gene054626:CDS |
| GTTGACTGGAGATTCTGGTG+TGG | 0.609738 | 3.4:+89360383 | MS.gene054626:CDS |
| CACTTACAACAAACCTGAGG+AGG | 0.612557 | 3.4:-89360419 | None:intergenic |
| TGGTCCACGAGCCGCGACGG+TGG | 0.613060 | 3.4:-89356983 | None:intergenic |
| ATCAGAGAAGCATACAGAGA+TGG | 0.615357 | 3.4:+89357338 | MS.gene054626:CDS |
| GGTTCACCGCACCACCGTTG+AGG | 0.616374 | 3.4:+89356930 | MS.gene054626:CDS |
| CCTATCTGTACGAGTCGTTG+AGG | 0.619810 | 3.4:-89359561 | None:intergenic |
| GGCTGATCGCACCACCGTCG+CGG | 0.620519 | 3.4:+89356972 | MS.gene054626:CDS |
| TGGTTCTTGAAGTTGTAACC+AGG | 0.626960 | 3.4:-89353246 | None:intergenic |
| TCAAGAACCAAGATACAGAA+GGG | 0.635453 | 3.4:+89353259 | MS.gene054626:CDS |
| TGTGGTTAGGGAGAAGCTTG+GGG | 0.637104 | 3.4:+89353059 | MS.gene054626:CDS |
| TTAACGGGACCAAAATACGA+TGG | 0.640656 | 3.4:+89353021 | MS.gene054626:CDS |
| GTGCAAACAAGGTGTGATGG+TGG | 0.641962 | 3.4:+89359763 | MS.gene054626:CDS |
| TAAGGGAGTTGAACCACCGT+GGG | 0.644389 | 3.4:-89353621 | None:intergenic |
| TCTCCCTAACCACACTGTGT+AGG | 0.645782 | 3.4:-89353050 | None:intergenic |
| GAGTCGAGCATCCATGCAAG+GGG | 0.652281 | 3.4:-89353181 | None:intergenic |
| TCGCAACTTCAAGAATTAGA+CGG | 0.655679 | 3.4:+89352670 | MS.gene054626:CDS |
| ATGGTGCAAACAAGGTGTGA+TGG | 0.656549 | 3.4:+89359760 | MS.gene054626:CDS |
| GAAATCAACCATATCTCCAG+AGG | 0.656859 | 3.4:-89353663 | None:intergenic |
| GGTGCGATCAGCCTTATTGG+TGG | 0.661730 | 3.4:-89356962 | None:intergenic |
| GATGTCTTTATGTCAAACGT+GGG | 0.664930 | 3.4:-89353120 | None:intergenic |
| CTAATGACAATGTCTTCTCG+AGG | 0.668257 | 3.4:+89360195 | MS.gene054626:CDS |
| GGTGGTGAGATGAGCCTCAA+CGG | 0.668428 | 3.4:-89356944 | None:intergenic |
| TGATGTCTTTATGTCAAACG+TGG | 0.670126 | 3.4:-89353121 | None:intergenic |
| GTGACTATTCTAAGCATCGA+CGG | 0.670875 | 3.4:+89352598 | MS.gene054626:CDS |
| GGTGGTGCCGATAACCGTAA+CGG | 0.673868 | 3.4:-89356902 | None:intergenic |
| GGTGGTGCGGTGAACCACAA+CGG | 0.677583 | 3.4:-89356923 | None:intergenic |
| GATGAGCCTCAACGGTGGTG+CGG | 0.687541 | 3.4:-89356936 | None:intergenic |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3.4:-89352577 | None:intergenic |
| ATTACAGGAACAAGTACAGG+TGG | 0.697018 | 3.4:+89352727 | MS.gene054626:CDS |
| TTAAGGGAGTTGAACCACCG+TGG | 0.712500 | 3.4:-89353622 | None:intergenic |
| GAGTTCAACCTCATTGATGG+TGG | 0.718974 | 3.4:+89353291 | MS.gene054626:CDS |
| TTGGATTGGTTAACCCACGG+TGG | 0.722351 | 3.4:+89353608 | MS.gene054626:CDS |
| AAACACTTACAACAAACCTG+AGG | 0.725137 | 3.4:-89360422 | None:intergenic |
| GGTGCGGTGAACCACAACGG+TGG | 0.726998 | 3.4:-89356920 | None:intergenic |
| TAGTTTCCACAAGATCAAGG+CGG | 0.729837 | 3.4:+89359490 | MS.gene054626:intron |
| GGTGCCGATAACCGTAACGG+CGG | 0.730716 | 3.4:-89356899 | None:intergenic |
| TGGGAAATACCTACACAGTG+TGG | 0.740267 | 3.4:+89353041 | MS.gene054626:CDS |
| ATGTCTTTATGTCAAACGTG+GGG | 0.746412 | 3.4:-89353119 | None:intergenic |
| GGTGAGATGAGCCTCAACGG+TGG | 0.749436 | 3.4:-89356941 | None:intergenic |
| ACTATTCTAAGCATCGACGG+TGG | 0.761071 | 3.4:+89352601 | MS.gene054626:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 89352541 | 89360990 | 89352541 | ID=MS.gene054626 |
| chr3.4 | mRNA | 89352541 | 89360990 | 89352541 | ID=MS.gene054626.t1;Parent=MS.gene054626 |
| chr3.4 | exon | 89352541 | 89352863 | 89352541 | ID=MS.gene054626.t1.exon1;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89352541 | 89352863 | 89352541 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89352984 | 89353332 | 89352984 | ID=MS.gene054626.t1.exon2;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89352984 | 89353332 | 89352984 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89353440 | 89353742 | 89353440 | ID=MS.gene054626.t1.exon3;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89353440 | 89353742 | 89353440 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89353984 | 89354159 | 89353984 | ID=MS.gene054626.t1.exon4;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89353984 | 89354159 | 89353984 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89356897 | 89357008 | 89356897 | ID=MS.gene054626.t1.exon5;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89356897 | 89357008 | 89356897 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89357293 | 89357391 | 89357293 | ID=MS.gene054626.t1.exon6;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89357293 | 89357391 | 89357293 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89359493 | 89359572 | 89359493 | ID=MS.gene054626.t1.exon7;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89359493 | 89359572 | 89359493 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89359660 | 89359813 | 89359660 | ID=MS.gene054626.t1.exon8;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89359660 | 89359813 | 89359660 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89360056 | 89360216 | 89360056 | ID=MS.gene054626.t1.exon9;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89360056 | 89360216 | 89360056 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89360374 | 89360434 | 89360374 | ID=MS.gene054626.t1.exon10;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89360374 | 89360434 | 89360374 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| chr3.4 | exon | 89360946 | 89360990 | 89360946 | ID=MS.gene054626.t1.exon11;Parent=MS.gene054626.t1 |
| chr3.4 | CDS | 89360946 | 89360990 | 89360946 | ID=cds.MS.gene054626.t1;Parent=MS.gene054626.t1 |
| Gene Sequence |
| Protein sequence |
