AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056313


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056313.t1 MTR_7g016800 98.708 387 5 0 1 387 1 387 0.0 799
MS.gene056313.t1 MTR_7g016820 98.450 387 6 0 1 387 1 387 0.0 798
MS.gene056313.t1 MTR_7g016720 98.708 387 5 0 1 387 1 387 0.0 798
MS.gene056313.t1 MTR_7g016700 98.191 387 7 0 1 387 1 387 0.0 798
MS.gene056313.t1 MTR_7g016780 97.933 387 8 0 1 387 1 387 0.0 795
MS.gene056313.t1 MTR_5g007730 97.933 387 8 0 1 387 1 387 0.0 795
MS.gene056313.t1 MTR_1g098140 97.933 387 8 0 1 387 1 387 0.0 794
MS.gene056313.t1 MTR_1g097935 97.674 387 9 0 1 387 1 387 0.0 791
MS.gene056313.t1 MTR_1g097910 97.674 387 9 0 1 387 1 387 0.0 791
MS.gene056313.t1 MTR_5g007760 96.124 387 15 0 1 387 1 387 0.0 783
MS.gene056313.t1 MTR_5g007717 96.124 387 15 0 1 387 1 387 0.0 781
MS.gene056313.t1 MTR_5g007713 95.866 387 16 0 1 387 1 387 0.0 781
MS.gene056313.t1 MTR_3g083920 90.181 387 38 0 1 387 1 387 0.0 749
MS.gene056313.t1 MTR_3g083910 89.664 387 40 0 1 387 1 387 0.0 749
MS.gene056313.t1 MTR_2g058470 87.080 387 50 0 1 387 1 387 0.0 717
MS.gene056313.t1 MTR_7g084300 81.137 387 73 0 1 387 1 387 0.0 679
MS.gene056313.t1 MTR_3g086260 81.395 387 72 0 1 387 1 387 0.0 678
MS.gene056313.t1 MTR_7g113405 95.681 301 13 0 87 387 1 301 0.0 597
MS.gene056313.t1 MTR_3g088675 67.358 386 126 0 1 386 1 386 0.0 584
MS.gene056313.t1 MTR_5g007740 80.308 325 64 0 64 388 1 325 0.0 550
MS.gene056313.t1 MTR_5g007723 68.687 396 75 5 12 388 32 397 0.0 535
MS.gene056313.t1 MTR_5g007770 78.333 300 32 2 70 369 1 267 5.67e-169 476
MS.gene056313.t1 MTR_3g088670 48.843 389 185 6 10 387 2 387 1.22e-128 378
MS.gene056313.t1 MTR_4g075560 42.895 380 210 4 11 387 13 388 8.66e-103 311
MS.gene056313.t1 MTR_4g078730 37.534 373 226 2 15 387 24 389 1.83e-92 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056313.t1 AT5G13930 82.383 386 67 1 3 387 8 393 0.0 677
MS.gene056313.t1 AT4G34850 41.067 375 217 3 15 387 18 390 1.84e-97 298
MS.gene056313.t1 AT4G00040 39.440 393 224 6 1 387 1 385 1.07e-95 293
MS.gene056313.t1 AT1G02050 39.628 376 217 5 15 387 24 392 4.21e-87 271
MS.gene056313.t1 AT4G34850 40.566 318 186 2 72 387 1 317 1.02e-81 255
MS.gene056313.t1 AT3G52160 25.781 256 167 10 150 397 97 337 8.10e-12 66.6
MS.gene056313.t1 AT3G52160 25.781 256 167 10 150 397 210 450 2.20e-11 66.2

Find 100 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATAGGTTTCTCAATTTC+TGG 0.117134 7.3:+81818059 None:intergenic
CTTGAATGGGGTGTATTATT+TGG 0.169989 7.3:-81817654 MS.gene056313:CDS
TGGGGTGTATTATTTGGTTT+TGG 0.289261 7.3:-81817648 MS.gene056313:CDS
CCGATTACAACTCAATCTTT+TGG 0.295351 7.3:-81817869 MS.gene056313:CDS
AACCTATATTTGAGATGGTT+TGG 0.308691 7.3:-81818046 MS.gene056313:CDS
CTTGTTGGACAAGCACTATT+TGG 0.314421 7.3:-81818122 MS.gene056313:CDS
TCCACTTGATCTAGAATTGC+AGG 0.315800 7.3:+81817828 None:intergenic
AGAGAAGTGCTCAGCGAGTA+TGG 0.334012 7.3:-81817765 MS.gene056313:CDS
GCTTCGTTTGGCTAAAGATT+TGG 0.342769 7.3:-81818237 MS.gene056313:CDS
AAACACATATGTTGAGGATT+TGG 0.348961 7.3:-81817214 MS.gene056313:CDS
CTTTGTTCAACACAATTTGC+TGG 0.349776 7.3:+81818990 None:intergenic
GGTTTCTCAATTTCTGGTAC+TGG 0.354846 7.3:+81818065 None:intergenic
TCAATGGCTCCTTCACTATC+AGG 0.368167 7.3:+81818005 None:intergenic
GAGTTTAGTTAGTTGATAAT+CGG 0.375150 7.3:+81818328 None:intergenic
TGAATACATGGCCCCTTCAT+TGG 0.380102 7.3:-81818495 MS.gene056313:CDS
AAGTGAGTAATCTTTGACTT+TGG 0.381814 7.3:+81818389 None:intergenic
CACCTTCTTAAAGATGTTCC+TGG 0.385004 7.3:-81817951 MS.gene056313:CDS
AGGTGGCACGGTGCTTCGTT+TGG 0.407834 7.3:-81818249 MS.gene056313:CDS
CCAAAAGATTGAGTTGTAAT+CGG 0.409783 7.3:+81817869 None:intergenic
GGAGCTGCTGCACTCATTGT+TGG 0.411529 7.3:-81818095 MS.gene056313:CDS
GCCATGTATTCACAAACATT+AGG 0.420204 7.3:+81818506 None:intergenic
CCAATGGCCAAGATAGTTGC+AGG 0.424125 7.3:+81819023 None:intergenic
ACTCACTTGGACAGCCTTGT+TGG 0.426712 7.3:-81818137 MS.gene056313:CDS
GGCCGAGGCTTTCGAGCCAT+TGG 0.426928 7.3:-81817898 MS.gene056313:CDS
CAAGAAGGATTGAAGACAAC+AGG 0.432547 7.3:-81817684 MS.gene056313:CDS
TTAAATCCAAGTAGTTCTAA+TGG 0.435197 7.3:-81817240 MS.gene056313:CDS
GTCCAAACCATCTCAAATAT+AGG 0.437103 7.3:+81818044 None:intergenic
TTATCAACTAACTAAACTCT+TGG 0.442211 7.3:-81818324 MS.gene056313:CDS
AACAGGAGAAGGACTTGAAT+GGG 0.444037 7.3:-81817667 MS.gene056313:CDS
AGAAGGTCCTGCAACTATCT+TGG 0.450898 7.3:-81819030 MS.gene056313:CDS
GCTGTCCAAGTGAGTATCAC+TGG 0.458078 7.3:+81818145 None:intergenic
GCGCAAAACAACCGTTTCAA+TGG 0.461439 7.3:+81817614 None:intergenic
ATCTAGAATTGCAGGTCCAC+CGG 0.463612 7.3:+81817836 None:intergenic
AAAGAACATTACTAAAGCAT+TGG 0.469437 7.3:-81817919 MS.gene056313:CDS
GCAAGACATGGTGGTGGTAG+AGG 0.469468 7.3:-81818465 MS.gene056313:CDS
CATGTATCTCCTCTTGATCA+TGG 0.469562 7.3:+81818559 None:intergenic
GCCGAGGCTTTCGAGCCATT+GGG 0.470191 7.3:-81817897 MS.gene056313:CDS
TTTGCACCATTAGAACTACT+TGG 0.470420 7.3:+81817234 None:intergenic
AGTGAAAGCCATAAAAGAAT+GGG 0.471225 7.3:-81818417 MS.gene056313:CDS
TTCACGAAGGTGACCATCAA+TGG 0.471758 7.3:+81817989 None:intergenic
TCTTGCCTTGCATCCAATGA+AGG 0.479267 7.3:+81818482 None:intergenic
CCCCTCTCACAAGTCTCAAA+AGG 0.479314 7.3:-81817175 MS.gene056313:CDS
GTCACCGCTGTCACATTTCG+TGG 0.482260 7.3:-81818170 MS.gene056313:CDS
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 7.3:-81817950 MS.gene056313:CDS
AGACTTGTGAGAGGGGATGC+TGG 0.484869 7.3:+81817182 None:intergenic
CAGTGAAAGCCATAAAAGAA+TGG 0.485395 7.3:-81818418 MS.gene056313:CDS
TCCTAATGTTTGTGAATACA+TGG 0.486149 7.3:-81818507 MS.gene056313:CDS
GATGGTCACCTTCGTGAAGC+TGG 0.486168 7.3:-81817984 MS.gene056313:CDS
GATAGTGAAGGAGCCATTGA+TGG 0.488582 7.3:-81818002 MS.gene056313:CDS
GTTAGTTGATAATCGGCTCC+AGG 0.491772 7.3:+81818335 None:intergenic
CAACAGGAGAAGGACTTGAA+TGG 0.502457 7.3:-81817668 MS.gene056313:CDS
TATCAACTAACTAAACTCTT+GGG 0.505213 7.3:-81818323 MS.gene056313:CDS
TGAGAAACCTATATTTGAGA+TGG 0.507221 7.3:-81818051 MS.gene056313:CDS
ACCAGGACTTACCATTGAAA+CGG 0.510913 7.3:-81817625 MS.gene056313:CDS
CTCTTCATAGCTGCAGATGA+AGG 0.513803 7.3:+81817135 None:intergenic
CAAAAGGAGGCAGCTATCAC+AGG 0.518861 7.3:-81817159 MS.gene056313:CDS
CTGTCCAAGTGAGTATCACT+GGG 0.525567 7.3:+81818146 None:intergenic
GTCTTCGCCCATATGTGAAA+AGG 0.532629 7.3:-81818301 MS.gene056313:CDS
ACCGTTTCAATGGTAAGTCC+TGG 0.536054 7.3:+81817624 None:intergenic
AGAAAGAAATCAACTCAAGA+AGG 0.548629 7.3:-81817699 MS.gene056313:CDS
TCCCAGGAACATCTTTAAGA+AGG 0.550142 7.3:+81817949 None:intergenic
ATGTTCTTTGAAACAATCCC+AGG 0.550779 7.3:+81817933 None:intergenic
TGCTGGATTTGCAGTGCCAA+TGG 0.555118 7.3:+81819007 None:intergenic
TCCCAATGGCTCGAAAGCCT+CGG 0.555332 7.3:+81817896 None:intergenic
GTGGTAGAGGTACCTAGACT+AGG 0.557229 7.3:-81818452 MS.gene056313:CDS
CTTGCCTTGCATCCAATGAA+GGG 0.559841 7.3:+81818483 None:intergenic
GCAGCTTCCTTCCCTAGTCT+AGG 0.561469 7.3:+81818440 None:intergenic
TGGCCCCTTCATTGGATGCA+AGG 0.561644 7.3:-81818487 MS.gene056313:CDS
GGACAAGCACTATTTGGAGA+TGG 0.563405 7.3:-81818116 MS.gene056313:CDS
ACCTGCAATTCTAGATCAAG+TGG 0.566779 7.3:-81817829 MS.gene056313:CDS
AGGCATGTCTACACCACTTG+TGG 0.569916 7.3:+81818355 None:intergenic
TCTAGAATTGCAGGTCCACC+GGG 0.570884 7.3:+81817837 None:intergenic
ACAAGTGGTGTAGACATGCC+TGG 0.572074 7.3:-81818353 MS.gene056313:CDS
CAAATAGTGCTTGTCCAACA+AGG 0.572762 7.3:+81818123 None:intergenic
GGATTGAAGACAACAGGAGA+AGG 0.573266 7.3:-81817678 MS.gene056313:CDS
CCTGCAACTATCTTGGCCAT+TGG 0.574132 7.3:-81819023 MS.gene056313:CDS
CATTACTAAAGCATTGGCCG+AGG 0.581308 7.3:-81817913 MS.gene056313:CDS
AGAGGTACCTAGACTAGGGA+AGG 0.582711 7.3:-81818447 MS.gene056313:CDS
GTGATAAATCCATGATCAAG+AGG 0.584564 7.3:-81818568 MS.gene056313:CDS
TTAATCGTTTGCACCACAAG+TGG 0.591579 7.3:-81818368 MS.gene056313:CDS
CGTAAAGCTCAAAGAGCAGA+AGG 0.599601 7.3:-81819047 MS.gene056313:CDS
CTCTCACAAGTCTCAAAAGG+AGG 0.606656 7.3:-81817172 MS.gene056313:CDS
TGGTGCAAACACATATGTTG+AGG 0.612173 7.3:-81817220 MS.gene056313:CDS
TGGTAGAGGTACCTAGACTA+GGG 0.618791 7.3:-81818451 MS.gene056313:CDS
CAACAAAGGTGCTCGTGTGT+TGG 0.620198 7.3:-81818207 MS.gene056313:CDS
TGGCCCCAGTGATACTCACT+TGG 0.620487 7.3:-81818150 MS.gene056313:CDS
ATTGGATGCAAGGCAAGACA+TGG 0.621464 7.3:-81818477 MS.gene056313:CDS
TTGCCTTGCATCCAATGAAG+GGG 0.637154 7.3:+81818484 None:intergenic
ACAATTGCTCCTGATAGTGA+AGG 0.642382 7.3:-81818014 MS.gene056313:CDS
AGGTACATGATGTATCAACA+AGG 0.663261 7.3:-81818281 MS.gene056313:CDS
TTGTAATCGGAAATTCCCAA+TGG 0.669069 7.3:+81817882 None:intergenic
GGTACATGATGTATCAACAA+GGG 0.674375 7.3:-81818280 MS.gene056313:CDS
TGCAAGGCAAGACATGGTGG+TGG 0.676603 7.3:-81818471 MS.gene056313:CDS
GTGAAAGCCATAAAAGAATG+GGG 0.681481 7.3:-81818416 MS.gene056313:CDS
GATTTGGCTGAGAACAACAA+AGG 0.683242 7.3:-81818221 MS.gene056313:CDS
ATGTTAGTCCAGCTTCACGA+AGG 0.698828 7.3:+81817976 None:intergenic
ACAGGAGAAGGACTTGAATG+GGG 0.714424 7.3:-81817666 MS.gene056313:CDS
GGGGCCACGAAATGTGACAG+CGG 0.727681 7.3:+81818166 None:intergenic
GGATGCAAGGCAAGACATGG+TGG 0.736388 7.3:-81818474 MS.gene056313:CDS
TGTCCAAGTGAGTATCACTG+GGG 0.825944 7.3:+81818147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATATGATAAATAG+AGG + chr7.3:81817260-81817279 None:intergenic 10.0%
!!! ATTTGTTTAATTTTTATGTA+AGG - chr7.3:81818595-81818614 MS.gene056313:intron 10.0%
!!! TGATATAAGTAAATAATTTT+AGG + chr7.3:81817525-81817544 None:intergenic 10.0%
!! AAATAATTAAGCATTTCATA+TGG + chr7.3:81818552-81818571 None:intergenic 15.0%
!! AAGAATACATATATTTGAAA+TGG + chr7.3:81817361-81817380 None:intergenic 15.0%
!!! AACTAATTTTACATTATCAT+AGG - chr7.3:81818866-81818885 MS.gene056313:intron 15.0%
!!! AATTATTATTTGATTCGTTT+TGG - chr7.3:81817493-81817512 MS.gene056313:intron 15.0%
!!! ATTGTGTTATTTTAATATGA+TGG + chr7.3:81818650-81818669 None:intergenic 15.0%
!!! GTGATTTTAAAGTAAAAATC+AGG + chr7.3:81817176-81817195 None:intergenic 20.0%
!!! TTGTACCGTATTTTAAATAT+GGG + chr7.3:81817395-81817414 None:intergenic 20.0%
!!! TTTGTACCGTATTTTAAATA+TGG + chr7.3:81817396-81817415 None:intergenic 20.0%
! AAAGAACATTACTAAAGCAT+TGG - chr7.3:81818214-81818233 MS.gene056313:CDS 25.0%
! AATATAGGTTTCTCAATTTC+TGG + chr7.3:81818077-81818096 None:intergenic 25.0%
! TATCAACTAACTAAACTCTT+GGG - chr7.3:81817810-81817829 MS.gene056313:CDS 25.0%
! TTATCAACTAACTAAACTCT+TGG - chr7.3:81817809-81817828 MS.gene056313:CDS 25.0%
!! ATAATGTGTCTCAATTTGTT+TGG + chr7.3:81817458-81817477 None:intergenic 25.0%
!! TGATCCCCATATTTAAAATA+CGG - chr7.3:81817387-81817406 MS.gene056313:intron 25.0%
!!! CTAGTGTTTTTTATGTGAAT+TGG - chr7.3:81817327-81817346 MS.gene056313:intron 25.0%
!!! GAGTTTAGTTAGTTGATAAT+CGG + chr7.3:81817808-81817827 None:intergenic 25.0%
!!! TGTACCGTATTTTAAATATG+GGG + chr7.3:81817394-81817413 None:intergenic 25.0%
!!! TTAAATCCAAGTAGTTCTAA+TGG - chr7.3:81818893-81818912 MS.gene056313:intron 25.0%
AAACACATATGTTGAGGATT+TGG - chr7.3:81818919-81818938 MS.gene056313:CDS 30.0%
AGAAAGAAATCAACTCAAGA+AGG - chr7.3:81818434-81818453 MS.gene056313:CDS 30.0%
AGTGAAAGCCATAAAAGAAT+GGG - chr7.3:81817716-81817735 MS.gene056313:CDS 30.0%
CATTTCCTTAAAACTACTTC+AGG - chr7.3:81817543-81817562 MS.gene056313:intron 30.0%
TCCTAATGTTTGTGAATACA+TGG - chr7.3:81817626-81817645 MS.gene056313:CDS 30.0%
TGAGAAACCTATATTTGAGA+TGG - chr7.3:81818082-81818101 MS.gene056313:CDS 30.0%
! AACCTATATTTGAGATGGTT+TGG - chr7.3:81818087-81818106 MS.gene056313:CDS 30.0%
! AAGTGAGTAATCTTTGACTT+TGG + chr7.3:81817747-81817766 None:intergenic 30.0%
! ATCATGTACCTTTTCACATA+TGG + chr7.3:81817843-81817862 None:intergenic 30.0%
! CCAAAAGATTGAGTTGTAAT+CGG + chr7.3:81818267-81818286 None:intergenic 30.0%
! TCATGTACCTTTTCACATAT+GGG + chr7.3:81817842-81817861 None:intergenic 30.0%
!! TATCACCTGAAGTAGTTTTA+AGG + chr7.3:81817551-81817570 None:intergenic 30.0%
ACCTTCTTAAAGATGTTCCT+GGG - chr7.3:81818183-81818202 MS.gene056313:CDS 35.0%
AGGTACATGATGTATCAACA+AGG - chr7.3:81817852-81817871 MS.gene056313:CDS 35.0%
CAGTGAAAGCCATAAAAGAA+TGG - chr7.3:81817715-81817734 MS.gene056313:CDS 35.0%
CTTGAATGGGGTGTATTATT+TGG - chr7.3:81818479-81818498 MS.gene056313:CDS 35.0%
CTTTGTTCAACACAATTTGC+TGG + chr7.3:81817146-81817165 None:intergenic 35.0%
GCCATGTATTCACAAACATT+AGG + chr7.3:81817630-81817649 None:intergenic 35.0%
GGTACATGATGTATCAACAA+GGG - chr7.3:81817853-81817872 MS.gene056313:CDS 35.0%
GTCCAAACCATCTCAAATAT+AGG + chr7.3:81818092-81818111 None:intergenic 35.0%
GTGAAAGCCATAAAAGAATG+GGG - chr7.3:81817717-81817736 MS.gene056313:CDS 35.0%
GTGATAAATCCATGATCAAG+AGG - chr7.3:81817565-81817584 MS.gene056313:intron 35.0%
TTGTAATCGGAAATTCCCAA+TGG + chr7.3:81818254-81818273 None:intergenic 35.0%
TTTGCACCATTAGAACTACT+TGG + chr7.3:81818902-81818921 None:intergenic 35.0%
! CCGATTACAACTCAATCTTT+TGG - chr7.3:81818264-81818283 MS.gene056313:CDS 35.0%
! CTAGTTGCATTCATCTTTTC+AGG + chr7.3:81818350-81818369 None:intergenic 35.0%
!! ATGTTCTTTGAAACAATCCC+AGG + chr7.3:81818203-81818222 None:intergenic 35.0%
!! ATTCATCTTTTCAGGCTTCA+AGG + chr7.3:81818342-81818361 None:intergenic 35.0%
!! TGGGGTGTATTATTTGGTTT+TGG - chr7.3:81818485-81818504 MS.gene056313:CDS 35.0%
!!! GTATTATTTGGTTTTGGACC+AGG - chr7.3:81818491-81818510 MS.gene056313:CDS 35.0%
!!! TGCGTGTGTTTTGTTTATCT+TGG - chr7.3:81818403-81818422 MS.gene056313:CDS 35.0%
AACAGGAGAAGGACTTGAAT+GGG - chr7.3:81818466-81818485 MS.gene056313:CDS 40.0%
ACCAGGACTTACCATTGAAA+CGG - chr7.3:81818508-81818527 MS.gene056313:CDS 40.0%
ACCTGCAATTCTAGATCAAG+TGG - chr7.3:81818304-81818323 MS.gene056313:CDS 40.0%
CAAATAGTGCTTGTCCAACA+AGG + chr7.3:81818013-81818032 None:intergenic 40.0%
CAAGAAGGATTGAAGACAAC+AGG - chr7.3:81818449-81818468 MS.gene056313:CDS 40.0%
CACCTTCTTAAAGATGTTCC+TGG - chr7.3:81818182-81818201 MS.gene056313:CDS 40.0%
CATGTATCTCCTCTTGATCA+TGG + chr7.3:81817577-81817596 None:intergenic 40.0%
CTTGTTGGACAAGCACTATT+TGG - chr7.3:81818011-81818030 MS.gene056313:CDS 40.0%
GATTTGGCTGAGAACAACAA+AGG - chr7.3:81817912-81817931 MS.gene056313:CDS 40.0%
GCTTCGTTTGGCTAAAGATT+TGG - chr7.3:81817896-81817915 MS.gene056313:CDS 40.0%
TGGTGCAAACACATATGTTG+AGG - chr7.3:81818913-81818932 MS.gene056313:CDS 40.0%
TTAATCGTTTGCACCACAAG+TGG - chr7.3:81817765-81817784 MS.gene056313:CDS 40.0%
! ACAATTGCTCCTGATAGTGA+AGG - chr7.3:81818119-81818138 MS.gene056313:CDS 40.0%
! ATCTTTTGGATTGCACATCC+CGG - chr7.3:81818278-81818297 MS.gene056313:CDS 40.0%
! CTTTTCATTGCAGCAGTACT+AGG + chr7.3:81819046-81819065 None:intergenic 40.0%
! TCCACTTGATCTAGAATTGC+AGG + chr7.3:81818308-81818327 None:intergenic 40.0%
! TCCCAGGAACATCTTTAAGA+AGG + chr7.3:81818187-81818206 None:intergenic 40.0%
! TGGTTGACCCCATTCTTTTA+TGG + chr7.3:81817727-81817746 None:intergenic 40.0%
!! GGTTTCTCAATTTCTGGTAC+TGG + chr7.3:81818071-81818090 None:intergenic 40.0%
!!! TATCAACAAGGGTGTTTTGC+AGG - chr7.3:81817864-81817883 MS.gene056313:CDS 40.0%
!!! TCCTTTTGAGACTTGTGAGA+GGG + chr7.3:81818962-81818981 None:intergenic 40.0%
ACAGGAGAAGGACTTGAATG+GGG - chr7.3:81818467-81818486 MS.gene056313:CDS 45.0%
ACCGTTTCAATGGTAAGTCC+TGG + chr7.3:81818512-81818531 None:intergenic 45.0%
AGAAGGTCCTGCAACTATCT+TGG - chr7.3:81817103-81817122 MS.gene056313:CDS 45.0%
ATGTTAGTCCAGCTTCACGA+AGG + chr7.3:81818160-81818179 None:intergenic 45.0%
ATTGGATGCAAGGCAAGACA+TGG - chr7.3:81817656-81817675 MS.gene056313:CDS 45.0%
CAACAGGAGAAGGACTTGAA+TGG - chr7.3:81818465-81818484 MS.gene056313:CDS 45.0%
CGTAAAGCTCAAAGAGCAGA+AGG - chr7.3:81817086-81817105 MS.gene056313:CDS 45.0%
CTCTCACAAGTCTCAAAAGG+AGG - chr7.3:81818961-81818980 MS.gene056313:CDS 45.0%
CTCTTCATAGCTGCAGATGA+AGG + chr7.3:81819001-81819020 None:intergenic 45.0%
CTGTCCAAGTGAGTATCACT+GGG + chr7.3:81817990-81818009 None:intergenic 45.0%
CTTGCCTTGCATCCAATGAA+GGG + chr7.3:81817653-81817672 None:intergenic 45.0%
GATAGTGAAGGAGCCATTGA+TGG - chr7.3:81818131-81818150 MS.gene056313:CDS 45.0%
GCGCAAAACAACCGTTTCAA+TGG + chr7.3:81818522-81818541 None:intergenic 45.0%
GGACAAGCACTATTTGGAGA+TGG - chr7.3:81818017-81818036 MS.gene056313:CDS 45.0%
GGATTGAAGACAACAGGAGA+AGG - chr7.3:81818455-81818474 MS.gene056313:CDS 45.0%
GTCTTCGCCCATATGTGAAA+AGG - chr7.3:81817832-81817851 MS.gene056313:CDS 45.0%
TCAATGGCTCCTTCACTATC+AGG + chr7.3:81818131-81818150 None:intergenic 45.0%
TCTTGCCTTGCATCCAATGA+AGG + chr7.3:81817654-81817673 None:intergenic 45.0%
TGAATACATGGCCCCTTCAT+TGG - chr7.3:81817638-81817657 MS.gene056313:CDS 45.0%
TGTCCAAGTGAGTATCACTG+GGG + chr7.3:81817989-81818008 None:intergenic 45.0%
TTCACGAAGGTGACCATCAA+TGG + chr7.3:81818147-81818166 None:intergenic 45.0%
TTGCCTTGCATCCAATGAAG+GGG + chr7.3:81817652-81817671 None:intergenic 45.0%
! ATCTAGAATTGCAGGTCCAC+CGG + chr7.3:81818300-81818319 None:intergenic 45.0%
!! CATTACTAAAGCATTGGCCG+AGG - chr7.3:81818220-81818239 MS.gene056313:CDS 45.0%
!! GTTAGTTGATAATCGGCTCC+AGG + chr7.3:81817801-81817820 None:intergenic 45.0%
!! TGGTAGAGGTACCTAGACTA+GGG - chr7.3:81817682-81817701 MS.gene056313:CDS 45.0%
!!! CCTTTTGAGACTTGTGAGAG+GGG + chr7.3:81818961-81818980 None:intergenic 45.0%
!!! CTCCTTTTGAGACTTGTGAG+AGG + chr7.3:81818963-81818982 None:intergenic 45.0%
ACAAGTGGTGTAGACATGCC+TGG - chr7.3:81817780-81817799 MS.gene056313:CDS 50.0%
AGGCATGTCTACACCACTTG+TGG + chr7.3:81817781-81817800 None:intergenic 50.0%
CAAAAGGAGGCAGCTATCAC+AGG - chr7.3:81818974-81818993 MS.gene056313:CDS 50.0%
CCAATGGCCAAGATAGTTGC+AGG + chr7.3:81817113-81817132 None:intergenic 50.0%
CCCCTCTCACAAGTCTCAAA+AGG - chr7.3:81818958-81818977 MS.gene056313:CDS 50.0%
CCTGCAACTATCTTGGCCAT+TGG - chr7.3:81817110-81817129 MS.gene056313:CDS 50.0%
GCTGTCCAAGTGAGTATCAC+TGG + chr7.3:81817991-81818010 None:intergenic 50.0%
TGCTGGATTTGCAGTGCCAA+TGG + chr7.3:81817129-81817148 None:intergenic 50.0%
! ACTCACTTGGACAGCCTTGT+TGG - chr7.3:81817996-81818015 MS.gene056313:CDS 50.0%
! TCTAGAATTGCAGGTCCACC+GGG + chr7.3:81818299-81818318 None:intergenic 50.0%
! TTTTGGATTGCACATCCCGG+TGG - chr7.3:81818281-81818300 MS.gene056313:CDS 50.0%
!! AGAGAAGTGCTCAGCGAGTA+TGG - chr7.3:81818368-81818387 MS.gene056313:CDS 50.0%
!! AGAGGTACCTAGACTAGGGA+AGG - chr7.3:81817686-81817705 MS.gene056313:CDS 50.0%
!! CAACAAAGGTGCTCGTGTGT+TGG - chr7.3:81817926-81817945 MS.gene056313:CDS 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG - chr7.3:81817681-81817700 MS.gene056313:CDS 50.0%
!!! CAACAAGGGTGTTTTGCAGG+TGG - chr7.3:81817867-81817886 MS.gene056313:CDS 50.0%
AGACTTGTGAGAGGGGATGC+TGG + chr7.3:81818954-81818973 None:intergenic 55.0%
GATGGTCACCTTCGTGAAGC+TGG - chr7.3:81818149-81818168 MS.gene056313:CDS 55.0%
GCAGCTTCCTTCCCTAGTCT+AGG + chr7.3:81817696-81817715 None:intergenic 55.0%
GGAGCTGCTGCACTCATTGT+TGG - chr7.3:81818038-81818057 MS.gene056313:CDS 55.0%
GGATGCAAGGCAAGACATGG+TGG - chr7.3:81817659-81817678 MS.gene056313:CDS 55.0%
GTCACCGCTGTCACATTTCG+TGG - chr7.3:81817963-81817982 MS.gene056313:CDS 55.0%
TCCCAATGGCTCGAAAGCCT+CGG + chr7.3:81818240-81818259 None:intergenic 55.0%
TGCAAGGCAAGACATGGTGG+TGG - chr7.3:81817662-81817681 MS.gene056313:CDS 55.0%
TGGCCCCAGTGATACTCACT+TGG - chr7.3:81817983-81818002 MS.gene056313:CDS 55.0%
TGGCCCCTTCATTGGATGCA+AGG - chr7.3:81817646-81817665 MS.gene056313:CDS 55.0%
!! AGGGTGTTTTGCAGGTGGCA+CGG - chr7.3:81817872-81817891 MS.gene056313:CDS 55.0%
!! GCAAGACATGGTGGTGGTAG+AGG - chr7.3:81817668-81817687 MS.gene056313:CDS 55.0%
AGGTGGCACGGTGCTTCGTT+TGG - chr7.3:81817884-81817903 MS.gene056313:CDS 60.0%
GCCGAGGCTTTCGAGCCATT+GGG - chr7.3:81818236-81818255 MS.gene056313:CDS 60.0%
GGGGCCACGAAATGTGACAG+CGG + chr7.3:81817970-81817989 None:intergenic 60.0%
GGCCGAGGCTTTCGAGCCAT+TGG - chr7.3:81818235-81818254 MS.gene056313:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 81817065 81819090 81817065 ID=MS.gene056313
chr7.3 mRNA 81817065 81819090 81817065 ID=MS.gene056313.t1;Parent=MS.gene056313
chr7.3 exon 81818913 81819090 81818913 ID=MS.gene056313.t1.exon1;Parent=MS.gene056313.t1
chr7.3 CDS 81818913 81819090 81818913 ID=cds.MS.gene056313.t1;Parent=MS.gene056313.t1
chr7.3 exon 81817613 81818590 81817613 ID=MS.gene056313.t1.exon2;Parent=MS.gene056313.t1
chr7.3 CDS 81817613 81818590 81817613 ID=cds.MS.gene056313.t1;Parent=MS.gene056313.t1
chr7.3 exon 81817065 81817267 81817065 ID=MS.gene056313.t1.exon3;Parent=MS.gene056313.t1
chr7.3 CDS 81817065 81817267 81817065 ID=cds.MS.gene056313.t1;Parent=MS.gene056313.t1
Gene Sequence

>MS.gene056313

ATGGTGAGTGTGTCTGAAATTCGTAAAGCTCAAAGAGCAGAAGGTCCTGCAACTATCTTGGCCATTGGCACTGCAAATCCAGCAAATTGTGTTGAACAAAGCACTTATCCTGATTTTTACTTTAAAATCACAAACAGTGAACACAAAACTGAACTCAAAGAGAAATTTCAACGCATGTGTAAGTATTTTTTACCTCTATTTATCATATTTAAATACTTGAGTAAAAAAAACATTTCAGAAGCTTGAGTTCACATTTATTTCTCTAGTGTTTTTTATGTGAATTGGACTAATTACCATTTCAAATATATGTATTCTTAATATATGATCCCCATATTTAAAATACGGTACAAATGTCATTACTTTTAGCAGTCACTCATGATATTAATATTGCCAAACAAATTGAGACACATTATTTGCATTATGAGATCAATTATTATTTGATTCGTTTTGGTATTATCCTAAAATTATTTACTTATATCATTTCCTTAAAACTACTTCAGGTGATAAATCCATGATCAAGAGGAGATACATGTATCTAACAGAAGAGATTTTGAAAGAAAATCCTAATGTTTGTGAATACATGGCCCCTTCATTGGATGCAAGGCAAGACATGGTGGTGGTAGAGGTACCTAGACTAGGGAAGGAAGCTGCAGTGAAAGCCATAAAAGAATGGGGTCAACCAAAGTCAAAGATTACTCACTTAATCGTTTGCACCACAAGTGGTGTAGACATGCCTGGAGCCGATTATCAACTAACTAAACTCTTGGGTCTTCGCCCATATGTGAAAAGGTACATGATGTATCAACAAGGGTGTTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGATTTGGCTGAGAACAACAAAGGTGCTCGTGTGTTGGTTGTCTGTTCTGAAGTCACCGCTGTCACATTTCGTGGCCCCAGTGATACTCACTTGGACAGCCTTGTTGGACAAGCACTATTTGGAGATGGAGCTGCTGCACTCATTGTTGGTTCTGATCCAGTACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCTGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGCTGGACTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTACTAAAGCATTGGCCGAGGCTTTCGAGCCATTGGGAATTTCCGATTACAACTCAATCTTTTGGATTGCACATCCCGGTGGACCTGCAATTCTAGATCAAGTGGAGCAAAAGTTAGCCTTGAAGCCTGAAAAGATGAATGCAACTAGAGAAGTGCTCAGCGAGTATGGAAATATGTCAAGTGCGTGTGTTTTGTTTATCTTGGATGAAATGAGAAAGAAATCAACTCAAGAAGGATTGAAGACAACAGGAGAAGGACTTGAATGGGGTGTATTATTTGGTTTTGGACCAGGACTTACCATTGAAACGGTTGTTTTGCGCAGTGTAACCATATGAAATGCTTAATTATTTTATTTTTCATGTATCAATTTTCAATTTGTTTAATTTTTATGTAAGGTTGAAATTTCATCTAGTGTTCAAGATGTACCATCATATTAAAATAACACAATTGTTATTTATTTGACTAAATATCATTTATAATAAAGAAGCAAATCATGTCTGCATATTAACGACGATGTATATTTGACTAAATATCATTTATAATAAAAAAGCAATTGTTATTTATACAATTGTTTGTAACTTATGAATTAAGATTTATAATGTATTATCGTAATGTGTGTACTCTTCTTACTTTAAGTGTTATGAAACTAATTTTACATTATCATAGGCATGTTAAATCCAAGTAGTTCTAATGGTGCAAACACATATGTTGAGGATTTGGATATGCTAGCCAGCATCCCCTCTCACAAGTCTCAAAAGGAGGCAGCTATCACAGGACCTTCATCTGCAGCTATGAAGAGTGTATCGAAAGAGACAAACAATCCTAGTACTGCTGCAATGAAAAGTGTAAGCATATTAAGAACTCAATAA

Protein sequence

>MS.gene056313.t1

MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALAEAFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQEGLKTTGEGLEWGVLFGFGPGLTIETVVLRSMLNPSSSNGANTYVEDLDMLASIPSHKSQKEAAITGPSSAAMKSVSKETNNPSTAAMKSVSILRTQ