Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06880.t1 | XP_003602296.2 | 98.9 | 471 | 5 | 0 | 1 | 471 | 561 | 1031 | 2.50E-268 | 934.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06880.t1 | Q9FIN7 | 61.1 | 471 | 171 | 3 | 1 | 471 | 564 | 1022 | 2.3e-169 | 596.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06880.t1 | G7J7I6 | 98.9 | 471 | 5 | 0 | 1 | 471 | 561 | 1031 | 1.8e-268 | 934.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057185 | MS.gene06880 | 0.87157 | 6.18E-67 | -1.69E-46 |
MS.gene057186 | MS.gene06880 | 0.864555 | 1.12E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 97 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAGCTTTGCAGAATAAAT+TGG | 0.221949 | 3.1:-73948937 | MS.gene06880:CDS |
TTTCACAGGGTGTCCTTAAT+TGG | 0.231775 | 3.1:-73949023 | MS.gene06880:CDS |
ATTTGGATAGGAACTGTTTC+TGG | 0.232942 | 3.1:+73949551 | None:intergenic |
TTGAGGAAGCTTAGATAATA+TGG | 0.278880 | 3.1:+73948773 | None:intergenic |
GCTACAGCAGCTTCGTTAAT+AGG | 0.297401 | 3.1:+73949671 | None:intergenic |
AAAATTTAAATTTATGCTTA+AGG | 0.309359 | 3.1:-73949111 | MS.gene06880:CDS |
GGGTACAAGTTCTGTTTCTT+TGG | 0.316297 | 3.1:-73946649 | MS.gene06880:CDS |
ATGGGTGACTTCTCCAATTA+AGG | 0.316943 | 3.1:+73949010 | None:intergenic |
CTTGCAGAAAGTGGGAAAAT+TGG | 0.326443 | 3.1:-73949647 | MS.gene06880:CDS |
CATTGAAGCAGGGAGACTTT+TGG | 0.329978 | 3.1:-73947192 | MS.gene06880:CDS |
ATGTATGGGCAGCTTCTTCC+TGG | 0.331843 | 3.1:-73949530 | MS.gene06880:CDS |
ACAAAGGGAGACAAAGAATA+TGG | 0.338245 | 3.1:+73949596 | None:intergenic |
TGAGCTCTCAAAATGGTATA+TGG | 0.340782 | 3.1:-73949342 | MS.gene06880:CDS |
AAATTTAAATTTATGCTTAA+GGG | 0.348375 | 3.1:-73949110 | MS.gene06880:CDS |
GAAGAAGCTGCCCATACATT+TGG | 0.372186 | 3.1:+73949534 | None:intergenic |
GAATAAATTTAGAAAGAATA+AGG | 0.375640 | 3.1:+73946838 | None:intergenic |
TGCTGTGAGGCAAGATGATT+GGG | 0.376762 | 3.1:-73949486 | MS.gene06880:CDS |
CCTAACTCACCATGCATTTG+AGG | 0.378156 | 3.1:+73948756 | None:intergenic |
CAATCGATGAGCTCTCAAAA+TGG | 0.382725 | 3.1:-73949349 | MS.gene06880:CDS |
TTTGAGAGCTCATCGATTGA+TGG | 0.392826 | 3.1:+73949353 | None:intergenic |
TGACTTGAATTTGAATATCA+TGG | 0.396761 | 3.1:+73949417 | None:intergenic |
ACAGTTCCTATCCAAATGTA+TGG | 0.397947 | 3.1:-73949545 | MS.gene06880:CDS |
TGCAGAGGATTGCTTAAAGC+TGG | 0.399248 | 3.1:-73946702 | MS.gene06880:CDS |
CCATTCTATAAATCAAAATC+TGG | 0.404432 | 3.1:-73948991 | MS.gene06880:CDS |
TTGCTGTGAGGCAAGATGAT+TGG | 0.409982 | 3.1:-73949487 | MS.gene06880:CDS |
AAATTTATTCGCCGTCAGCC+TGG | 0.429279 | 3.1:-73946825 | MS.gene06880:CDS |
GACGACAATGATAGTGAAAC+AGG | 0.430152 | 3.1:-73949179 | MS.gene06880:CDS |
TTTCAAAATAGACATTACTT+TGG | 0.435914 | 3.1:+73948874 | None:intergenic |
TCTTGCACGTAATTACTTGA+AGG | 0.436564 | 3.1:-73946670 | MS.gene06880:CDS |
ACTCAATCAAAATATATTCC+AGG | 0.437776 | 3.1:+73946727 | None:intergenic |
TTTGGATAGGAACTGTTTCT+GGG | 0.448460 | 3.1:+73949552 | None:intergenic |
AGGGGCTCAGTTAGACGAAA+AGG | 0.453163 | 3.1:-73946880 | MS.gene06880:CDS |
CCCTAGCTGCTTGAATTACA+AGG | 0.459721 | 3.1:+73946607 | None:intergenic |
CAATATGAGTCTTGTCATGT+GGG | 0.463965 | 3.1:-73949153 | MS.gene06880:CDS |
TGTTTCTTTGGCATCAGAGA+AGG | 0.466330 | 3.1:-73946637 | MS.gene06880:CDS |
GCTGAAGGGCACATTGAAGC+AGG | 0.468269 | 3.1:-73947203 | MS.gene06880:CDS |
ATTTGTGCACAGTTACAGAT+AGG | 0.471947 | 3.1:-73948812 | MS.gene06880:CDS |
AGGAATCATTTCTAGTAAGA+TGG | 0.477916 | 3.1:-73948968 | MS.gene06880:CDS |
ATCTTACTTCAGAACAAGAA+AGG | 0.480771 | 3.1:+73946562 | None:intergenic |
ATTTCTAGTAAGATGGTTGA+AGG | 0.484169 | 3.1:-73948961 | MS.gene06880:CDS |
GCTAAAACTTTCAAAACAAA+GGG | 0.493026 | 3.1:+73949581 | None:intergenic |
CTGGCCGATCAGATAGTGAA+TGG | 0.494203 | 3.1:-73946806 | MS.gene06880:CDS |
AGGAACTGTTTCTGGGATAG+AGG | 0.499945 | 3.1:+73949559 | None:intergenic |
TGAGTTGCAGCAGTTCCATC+AGG | 0.503976 | 3.1:-73949234 | MS.gene06880:CDS |
GGCTAAAACTTTCAAAACAA+AGG | 0.518762 | 3.1:+73949580 | None:intergenic |
GCTGTAGCACTTGCAGAAAG+TGG | 0.519972 | 3.1:-73949656 | MS.gene06880:CDS |
TTATGCGCGAAAAGTTTCAC+AGG | 0.526229 | 3.1:-73949037 | MS.gene06880:CDS |
CTTGCACGTAATTACTTGAA+GGG | 0.530172 | 3.1:-73946669 | MS.gene06880:CDS |
TCAATATGAGTCTTGTCATG+TGG | 0.532645 | 3.1:-73949154 | MS.gene06880:CDS |
ATATATTCCAGGTCCAGAAA+AGG | 0.535778 | 3.1:+73946738 | None:intergenic |
GAGCAAACTCAAGTAGGCTC+AGG | 0.542431 | 3.1:+73949273 | None:intergenic |
CTTGAGTTTGCTCTTCGCAA+AGG | 0.542595 | 3.1:-73949263 | MS.gene06880:CDS |
CCTTGTAATTCAAGCAGCTA+GGG | 0.543974 | 3.1:-73946607 | MS.gene06880:CDS |
GAATAAATTGGACATGTGCT+TGG | 0.547676 | 3.1:-73948925 | MS.gene06880:CDS |
GCAGAGGATTGCTTAAAGCT+GGG | 0.553221 | 3.1:-73946701 | MS.gene06880:CDS |
TATGCAGTACTTGAGGGAAA+AGG | 0.556850 | 3.1:-73946766 | MS.gene06880:CDS |
TGGCCGATCAGATAGTGAAT+GGG | 0.564079 | 3.1:-73946805 | MS.gene06880:CDS |
GGGGCTCAGTTAGACGAAAA+GGG | 0.564240 | 3.1:-73946879 | MS.gene06880:CDS |
CTGCATATCACGCCACATGC+TGG | 0.565897 | 3.1:+73946782 | None:intergenic |
CCAAGAAAATGCTTAACAAG+AGG | 0.571156 | 3.1:+73949386 | None:intergenic |
CATTCACTATCTGATCGGCC+AGG | 0.573114 | 3.1:+73946807 | None:intergenic |
CTGTAGCACTTGCAGAAAGT+GGG | 0.576919 | 3.1:-73949655 | MS.gene06880:CDS |
TATGGATAGAGCTAGAGCTA+TGG | 0.583943 | 3.1:-73949324 | MS.gene06880:CDS |
TGTATGGGCAGCTTCTTCCT+GGG | 0.588104 | 3.1:-73949529 | MS.gene06880:CDS |
TGCTTGGTGGTAATTGAGGA+AGG | 0.592088 | 3.1:-73948909 | MS.gene06880:CDS |
CAGTTCCTATCCAAATGTAT+GGG | 0.592408 | 3.1:-73949544 | MS.gene06880:CDS |
GCGTGATATGCAGTACTTGA+GGG | 0.592452 | 3.1:-73946772 | MS.gene06880:CDS |
TTTCGTCTAACTGAGCCCCT+GGG | 0.595088 | 3.1:+73946883 | None:intergenic |
TTCTATAAATCAAAATCTGG+AGG | 0.595909 | 3.1:-73948988 | MS.gene06880:CDS |
CTTCGTTAATAGGCATACTA+CGG | 0.596557 | 3.1:+73949681 | None:intergenic |
TCTAAGCTTCCTCAAATGCA+TGG | 0.600977 | 3.1:-73948765 | MS.gene06880:intron |
TATCTGATCGGCCAGGCTGA+CGG | 0.601543 | 3.1:+73946814 | None:intergenic |
TGCCTCACAGCAACACCAGA+CGG | 0.606152 | 3.1:+73949497 | None:intergenic |
TTCCGTCTGGTGTTGCTGTG+AGG | 0.607160 | 3.1:-73949499 | MS.gene06880:CDS |
GCCTTGTAATTCAAGCAGCT+AGG | 0.608877 | 3.1:-73946608 | MS.gene06880:CDS |
CATGTGCTTGGTGGTAATTG+AGG | 0.609897 | 3.1:-73948913 | MS.gene06880:CDS |
AAAAGACTTAGAGTTGCTGA+AGG | 0.616824 | 3.1:-73947218 | MS.gene06880:CDS |
AGCTGCCCATACATTTGGAT+AGG | 0.618349 | 3.1:+73949539 | None:intergenic |
TGCGAAGAGCAAACTCAAGT+AGG | 0.618665 | 3.1:+73949267 | None:intergenic |
ATATGAGTCTTGTCATGTGG+GGG | 0.618909 | 3.1:-73949151 | MS.gene06880:CDS |
ATAGTGAATGGGCCAGCATG+TGG | 0.621832 | 3.1:-73946794 | MS.gene06880:CDS |
TTGGGTTGAATGCAAGAGGA+TGG | 0.624885 | 3.1:-73949468 | MS.gene06880:CDS |
TGTGCACAGTTACAGATAGG+TGG | 0.628104 | 3.1:-73948809 | MS.gene06880:CDS |
AATATGAGTCTTGTCATGTG+GGG | 0.631958 | 3.1:-73949152 | MS.gene06880:CDS |
GCAAGTATAAGACATCCTGA+TGG | 0.633505 | 3.1:+73949219 | None:intergenic |
TAAATTGGACATGTGCTTGG+TGG | 0.633593 | 3.1:-73948922 | MS.gene06880:CDS |
CCAGACGGAAAAGACCTCCC+AGG | 0.641041 | 3.1:+73949512 | None:intergenic |
CTGAAGGGCACATTGAAGCA+GGG | 0.643193 | 3.1:-73947202 | MS.gene06880:CDS |
TGGCCCATTCACTATCTGAT+CGG | 0.643989 | 3.1:+73946802 | None:intergenic |
ATGATTGGGTTGAATGCAAG+AGG | 0.648686 | 3.1:-73949472 | MS.gene06880:CDS |
TATGCGCGAAAAGTTTCACA+GGG | 0.666334 | 3.1:-73949036 | MS.gene06880:CDS |
ATGGGCAGCTTCTTCCTGGG+AGG | 0.668795 | 3.1:-73949526 | MS.gene06880:CDS |
TATGAGTCTTGTCATGTGGG+GGG | 0.681239 | 3.1:-73949150 | MS.gene06880:CDS |
TAAATTTAGAAAGAATAAGG+CGG | 0.681647 | 3.1:+73946841 | None:intergenic |
AAAGACTTAGAGTTGCTGAA+GGG | 0.684679 | 3.1:-73947217 | MS.gene06880:CDS |
GGCGTGATATGCAGTACTTG+AGG | 0.699136 | 3.1:-73946773 | MS.gene06880:CDS |
GCTTGGTGGTAATTGAGGAA+GGG | 0.727742 | 3.1:-73948908 | MS.gene06880:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTTAAATTTATGCTTA+AGG | - | chr3.1:73947166-73947185 | MS.gene06880:intron | 10.0% |
!! | AAATTTAAATTTATGCTTAA+GGG | - | chr3.1:73947167-73947186 | MS.gene06880:intron | 10.0% |
!!! | TAAATCTTTTAATTTAACAT+CGG | - | chr3.1:73949180-73949199 | MS.gene06880:CDS | 10.0% |
!! | GAATAAATTTAGAAAGAATA+AGG | + | chr3.1:73949442-73949461 | None:intergenic | 15.0% |
!!! | AATTTAAATTTTTCATAGTC+TGG | + | chr3.1:73947158-73947177 | None:intergenic | 15.0% |
!!! | ATGTAATTTTAGTAATTTCT+TGG | - | chr3.1:73947582-73947601 | MS.gene06880:intron | 15.0% |
!!! | TGTAATTTTAGTAATTTCTT+GGG | - | chr3.1:73947583-73947602 | MS.gene06880:intron | 15.0% |
!! | AAGAAAAGAATAATAGATAC+TGG | + | chr3.1:73948452-73948471 | None:intergenic | 20.0% |
!! | AGAAAAGAATAATAGATACT+GGG | + | chr3.1:73948451-73948470 | None:intergenic | 20.0% |
!! | GAAATATCTTAATAGACAAA+CGG | + | chr3.1:73948198-73948217 | None:intergenic | 20.0% |
!! | TAAATTTAGAAAGAATAAGG+CGG | + | chr3.1:73949439-73949458 | None:intergenic | 20.0% |
!! | TTTCAAAATAGACATTACTT+TGG | + | chr3.1:73947406-73947425 | None:intergenic | 20.0% |
!! | TTTCAAAATATCTGAAAGTA+TGG | + | chr3.1:73948426-73948445 | None:intergenic | 20.0% |
!!! | AGTATCTATTATTCTTTTCT+TGG | - | chr3.1:73948451-73948470 | MS.gene06880:intron | 20.0% |
!!! | CAGATTTTGATTTATAGAAT+GGG | + | chr3.1:73947288-73947307 | None:intergenic | 20.0% |
!!! | GTAATTTTAGTAATTTCTTG+GGG | - | chr3.1:73947584-73947603 | MS.gene06880:intron | 20.0% |
!!! | GTATCTATTATTCTTTTCTT+GGG | - | chr3.1:73948452-73948471 | MS.gene06880:intron | 20.0% |
!!! | TAATTTTAGTAATTTCTTGG+GGG | - | chr3.1:73947585-73947604 | MS.gene06880:intron | 20.0% |
!!! | TCATGTTTTTGCTAATTATT+CGG | - | chr3.1:73948740-73948759 | MS.gene06880:intron | 20.0% |
! | AAATAGTGCAATCCAAATTA+TGG | + | chr3.1:73949241-73949260 | None:intergenic | 25.0% |
! | AATCAAGTATATACAGTTGA+AGG | + | chr3.1:73948817-73948836 | None:intergenic | 25.0% |
! | ACTCAATCAAAATATATTCC+AGG | + | chr3.1:73949553-73949572 | None:intergenic | 25.0% |
! | AGGCTTAATAGAAAATGTTT+GGG | + | chr3.1:73948511-73948530 | None:intergenic | 25.0% |
! | CCATTCTATAAATCAAAATC+TGG | - | chr3.1:73947286-73947305 | MS.gene06880:intron | 25.0% |
! | GAAAAGAATAATAGATACTG+GGG | + | chr3.1:73948450-73948469 | None:intergenic | 25.0% |
! | GCTAAAACTTTCAAAACAAA+GGG | + | chr3.1:73946699-73946718 | None:intergenic | 25.0% |
! | TAATTAACCATACTCTAGTT+TGG | + | chr3.1:73948136-73948155 | None:intergenic | 25.0% |
! | TAGGCTTAATAGAAAATGTT+TGG | + | chr3.1:73948512-73948531 | None:intergenic | 25.0% |
! | TGACTTGAATTTGAATATCA+TGG | + | chr3.1:73946863-73946882 | None:intergenic | 25.0% |
! | TTCAACTGTATATACTTGAT+TGG | - | chr3.1:73948816-73948835 | MS.gene06880:CDS | 25.0% |
! | TTCTATAAATCAAAATCTGG+AGG | - | chr3.1:73947289-73947308 | MS.gene06880:intron | 25.0% |
! | TTTATCAAGGTTGTTATGTA+AGG | + | chr3.1:73948293-73948312 | None:intergenic | 25.0% |
!! | AAACTGGAAAATTTTATACC+AGG | + | chr3.1:73948097-73948116 | None:intergenic | 25.0% |
!! | AATAGCTTTGCAGAATAAAT+TGG | - | chr3.1:73947340-73947359 | MS.gene06880:intron | 25.0% |
!! | GAATTAAATTTTGGATTTCC+TGG | - | chr3.1:73948076-73948095 | MS.gene06880:intron | 25.0% |
!! | TCGGCTAAAGAATTAAATTT+TGG | - | chr3.1:73948067-73948086 | MS.gene06880:intron | 25.0% |
!! | TTCATTTGAAGACATTTTCT+CGG | + | chr3.1:73948397-73948416 | None:intergenic | 25.0% |
!! | TTTTCAAAAGCTTATAGAGT+TGG | + | chr3.1:73948552-73948571 | None:intergenic | 25.0% |
!!! | ATTGCGCTTGTTAAAATTTT+AGG | - | chr3.1:73947614-73947633 | MS.gene06880:intron | 25.0% |
!!! | CCAGATTTTGATTTATAGAA+TGG | + | chr3.1:73947289-73947308 | None:intergenic | 25.0% |
!!! | TAATGTCTATTTTGAAACTG+AGG | - | chr3.1:73947409-73947428 | MS.gene06880:intron | 25.0% |
!!! | TTGCGCTTGTTAAAATTTTA+GGG | - | chr3.1:73947615-73947634 | MS.gene06880:intron | 25.0% |
AAAAAGGAAATCAATCAGGT+AGG | + | chr3.1:73948652-73948671 | None:intergenic | 30.0% | |
AAAAGGAAATCAATCAGGTA+GGG | + | chr3.1:73948651-73948670 | None:intergenic | 30.0% | |
AAAATATGCATTCAGATCAG+TGG | - | chr3.1:73947863-73947882 | MS.gene06880:intron | 30.0% | |
AATTCACACGATTGTATTAC+AGG | + | chr3.1:73948625-73948644 | None:intergenic | 30.0% | |
AATTGTCATTCATAACCTTG+AGG | - | chr3.1:73947742-73947761 | MS.gene06880:intron | 30.0% | |
AGAAACAAACAAAATTCTCG+AGG | - | chr3.1:73947772-73947791 | MS.gene06880:intron | 30.0% | |
AGTTGTAAAAGAGACATTAC+AGG | - | chr3.1:73947650-73947669 | MS.gene06880:intron | 30.0% | |
ATAACATAGTAAACACAACC+TGG | + | chr3.1:73949334-73949353 | None:intergenic | 30.0% | |
ATATTATTGCTAAGTAGCAG+AGG | + | chr3.1:73949284-73949303 | None:intergenic | 30.0% | |
ATTCACACGATTGTATTACA+GGG | + | chr3.1:73948624-73948643 | None:intergenic | 30.0% | |
ATTGTCATTCATAACCTTGA+GGG | - | chr3.1:73947743-73947762 | MS.gene06880:intron | 30.0% | |
GGAAAAAGTTTAATGGCTTT+GGG | + | chr3.1:73949376-73949395 | None:intergenic | 30.0% | |
GGCTAAAACTTTCAAAACAA+AGG | + | chr3.1:73946700-73946719 | None:intergenic | 30.0% | |
GTCAACAATGTTCACTTAAT+GGG | + | chr3.1:73948176-73948195 | None:intergenic | 30.0% | |
GTTGTAAAAGAGACATTACA+GGG | - | chr3.1:73947651-73947670 | MS.gene06880:intron | 30.0% | |
TGTGATGAATTGTTCAAAAC+TGG | + | chr3.1:73948113-73948132 | None:intergenic | 30.0% | |
TTCATCACTAGTACATCAAT+CGG | - | chr3.1:73948215-73948234 | MS.gene06880:intron | 30.0% | |
TTGAGGAAGCTTAGATAATA+TGG | + | chr3.1:73947507-73947526 | None:intergenic | 30.0% | |
TTGTAAAAGAGACATTACAG+GGG | - | chr3.1:73947652-73947671 | MS.gene06880:intron | 30.0% | |
TTGTATGTCTCATTCATGAA+GGG | - | chr3.1:73949151-73949170 | MS.gene06880:CDS | 30.0% | |
TTTGTATGTCTCATTCATGA+AGG | - | chr3.1:73949150-73949169 | MS.gene06880:CDS | 30.0% | |
! | AAATATCTGAAAGTATGGCA+CGG | + | chr3.1:73948421-73948440 | None:intergenic | 30.0% |
! | ATTTTCTCGGTTGACATAAA+AGG | + | chr3.1:73948384-73948403 | None:intergenic | 30.0% |
! | GCGAAGTAACATTTTTATCA+AGG | + | chr3.1:73948306-73948325 | None:intergenic | 30.0% |
! | TGTTGTTGTTGTTGTTGTAA+TGG | + | chr3.1:73948021-73948040 | None:intergenic | 30.0% |
! | TTTTCTCGGTTGACATAAAA+GGG | + | chr3.1:73948383-73948402 | None:intergenic | 30.0% |
!! | ACCTGATTGATTTCCTTTTT+CGG | - | chr3.1:73948652-73948671 | MS.gene06880:intron | 30.0% |
!! | AGGAATCATTTCTAGTAAGA+TGG | - | chr3.1:73947309-73947328 | MS.gene06880:intron | 30.0% |
!! | ATTCAACGCTGATTTAAACA+TGG | + | chr3.1:73948600-73948619 | None:intergenic | 30.0% |
!! | ATTTCTAGTAAGATGGTTGA+AGG | - | chr3.1:73947316-73947335 | MS.gene06880:intron | 30.0% |
!! | GCTTTTGAAAATTTTCAGTC+TGG | - | chr3.1:73948561-73948580 | MS.gene06880:intron | 30.0% |
!! | TTCAACGCTGATTTAAACAT+GGG | + | chr3.1:73948599-73948618 | None:intergenic | 30.0% |
!! | TTTTTGCTAATTATTCGGTG+TGG | - | chr3.1:73948745-73948764 | MS.gene06880:intron | 30.0% |
!!! | ATTTTGATTGAGTTTTGCAG+AGG | - | chr3.1:73949560-73949579 | MS.gene06880:CDS | 30.0% |
AAAAGACTTAGAGTTGCTGA+AGG | - | chr3.1:73949059-73949078 | MS.gene06880:CDS | 35.0% | |
AAAGACTTAGAGTTGCTGAA+GGG | - | chr3.1:73949060-73949079 | MS.gene06880:CDS | 35.0% | |
AACAAACAAAATTCTCGAGG+AGG | - | chr3.1:73947775-73947794 | MS.gene06880:intron | 35.0% | |
ACAAACAAAATTCTCGAGGA+GGG | - | chr3.1:73947776-73947795 | MS.gene06880:intron | 35.0% | |
ACAAAGGGAGACAAAGAATA+TGG | + | chr3.1:73946684-73946703 | None:intergenic | 35.0% | |
ACAAAGTTTGATTGTCACAG+AGG | + | chr3.1:73949135-73949154 | None:intergenic | 35.0% | |
ACAGTTCCTATCCAAATGTA+TGG | - | chr3.1:73946732-73946751 | MS.gene06880:CDS | 35.0% | |
ACCGAAAAAGGAAATCAATC+AGG | + | chr3.1:73948656-73948675 | None:intergenic | 35.0% | |
ACTATGAGAACCTGAAATGA+AGG | + | chr3.1:73948256-73948275 | None:intergenic | 35.0% | |
ATATATTCCAGGTCCAGAAA+AGG | + | chr3.1:73949542-73949561 | None:intergenic | 35.0% | |
ATTTGGATAGGAACTGTTTC+TGG | + | chr3.1:73946729-73946748 | None:intergenic | 35.0% | |
ATTTGTGCACAGTTACAGAT+AGG | - | chr3.1:73947465-73947484 | MS.gene06880:intron | 35.0% | |
CAGTTCCTATCCAAATGTAT+GGG | - | chr3.1:73946733-73946752 | MS.gene06880:CDS | 35.0% | |
CCAAGAAAATGCTTAACAAG+AGG | + | chr3.1:73946894-73946913 | None:intergenic | 35.0% | |
CTTCGTTAATAGGCATACTA+CGG | + | chr3.1:73946599-73946618 | None:intergenic | 35.0% | |
CTTGCACGTAATTACTTGAA+GGG | - | chr3.1:73949608-73949627 | MS.gene06880:CDS | 35.0% | |
GAATAAATTGGACATGTGCT+TGG | - | chr3.1:73947352-73947371 | MS.gene06880:intron | 35.0% | |
GGGAAAAAGTTTAATGGCTT+TGG | + | chr3.1:73949377-73949396 | None:intergenic | 35.0% | |
GGTCAACAATGTTCACTTAA+TGG | + | chr3.1:73948177-73948196 | None:intergenic | 35.0% | |
GTTATCTTTCTGTTCTATGC+AGG | - | chr3.1:73949349-73949368 | MS.gene06880:CDS | 35.0% | |
TCTTGCACGTAATTACTTGA+AGG | - | chr3.1:73949607-73949626 | MS.gene06880:CDS | 35.0% | |
TGAGCTCTCAAAATGGTATA+TGG | - | chr3.1:73946935-73946954 | MS.gene06880:intron | 35.0% | |
TGTATGTCTCATTCATGAAG+GGG | - | chr3.1:73949152-73949171 | MS.gene06880:CDS | 35.0% | |
TTGACATAAAAGGGTAGAAC+AGG | + | chr3.1:73948374-73948393 | None:intergenic | 35.0% | |
! | AAAAATGTTACTTCGCCTGA+TGG | - | chr3.1:73948310-73948329 | MS.gene06880:intron | 35.0% |
! | AATATGAGTCTTGTCATGTG+GGG | - | chr3.1:73947125-73947144 | MS.gene06880:intron | 35.0% |
! | AGAGCTATGGATGATTTTAG+CGG | - | chr3.1:73946966-73946985 | MS.gene06880:intron | 35.0% |
! | AGCATTTTCTTGGACTTCTT+TGG | - | chr3.1:73946901-73946920 | MS.gene06880:CDS | 35.0% |
! | CAACTCTAAGTCTTTTCTCA+AGG | + | chr3.1:73949055-73949074 | None:intergenic | 35.0% |
! | CAATATGAGTCTTGTCATGT+GGG | - | chr3.1:73947124-73947143 | MS.gene06880:intron | 35.0% |
! | CCTCTTGTTAAGCATTTTCT+TGG | - | chr3.1:73946891-73946910 | MS.gene06880:CDS | 35.0% |
! | CTTTTGGCATTTTATCAGGT+TGG | - | chr3.1:73949101-73949120 | MS.gene06880:CDS | 35.0% |
! | GAAGCATCTATCTTTGGTTT+GGG | + | chr3.1:73948899-73948918 | None:intergenic | 35.0% |
! | GAGACTTTTGGCATTTTATC+AGG | - | chr3.1:73949097-73949116 | MS.gene06880:CDS | 35.0% |
! | GTTGTTGTTGTTGTAATGGT+GGG | + | chr3.1:73948017-73948036 | None:intergenic | 35.0% |
! | TCAATATGAGTCTTGTCATG+TGG | - | chr3.1:73947123-73947142 | MS.gene06880:intron | 35.0% |
! | TGAAACTTTTCGCGCATAAA+TGG | + | chr3.1:73947239-73947258 | None:intergenic | 35.0% |
! | TGTTGTTGTTGTTGTAATGG+TGG | + | chr3.1:73948018-73948037 | None:intergenic | 35.0% |
! | TTGTTGTTGTTGTAATGGTG+GGG | + | chr3.1:73948016-73948035 | None:intergenic | 35.0% |
! | TTTAGCCGATTCCACTTAAT+GGG | + | chr3.1:73948056-73948075 | None:intergenic | 35.0% |
! | TTTCAGTCTGGTGTACTTTT+TGG | - | chr3.1:73948573-73948592 | MS.gene06880:intron | 35.0% |
! | TTTGGATAGGAACTGTTTCT+GGG | + | chr3.1:73946728-73946747 | None:intergenic | 35.0% |
!! | AAGCCATTAAACTTTTTCCC+AGG | - | chr3.1:73949377-73949396 | MS.gene06880:CDS | 35.0% |
!! | AGAAAGCATTGGCATTTAAG+AGG | - | chr3.1:73947699-73947718 | MS.gene06880:intron | 35.0% |
!! | AGAAGCATCTATCTTTGGTT+TGG | + | chr3.1:73948900-73948919 | None:intergenic | 35.0% |
!! | AGACAAGAAGCATCTATCTT+TGG | + | chr3.1:73948905-73948924 | None:intergenic | 35.0% |
!! | AGCCATTAAACTTTTTCCCA+GGG | - | chr3.1:73949378-73949397 | MS.gene06880:CDS | 35.0% |
!! | CTATCTTTGGTTTGGGAATT+GGG | + | chr3.1:73948892-73948911 | None:intergenic | 35.0% |
!! | GAAAGCATTGGCATTTAAGA+GGG | - | chr3.1:73947700-73947719 | MS.gene06880:intron | 35.0% |
!! | TCTATCTTTGGTTTGGGAAT+TGG | + | chr3.1:73948893-73948912 | None:intergenic | 35.0% |
ACAATATCCCCAACCAAGTA+TGG | + | chr3.1:73947912-73947931 | None:intergenic | 40.0% | |
ACTTGATTGGCATAAACCTG+TGG | - | chr3.1:73948829-73948848 | MS.gene06880:CDS | 40.0% | |
ATATTGAATAGCCAGACTGC+TGG | + | chr3.1:73948783-73948802 | None:intergenic | 40.0% | |
ATGGGTGACTTCTCCAATTA+AGG | + | chr3.1:73947270-73947289 | None:intergenic | 40.0% | |
ATGTGTGTGTCGCCATAATT+TGG | - | chr3.1:73949226-73949245 | MS.gene06880:CDS | 40.0% | |
CAATCGATGAGCTCTCAAAA+TGG | - | chr3.1:73946928-73946947 | MS.gene06880:intron | 40.0% | |
CAATTAGAATTCTCGCCATC+AGG | + | chr3.1:73948328-73948347 | None:intergenic | 40.0% | |
CATACAAAGTCAGTACTCTC+TGG | + | chr3.1:73948702-73948721 | None:intergenic | 40.0% | |
CATCACACCAAACTAGAGTA+TGG | - | chr3.1:73948126-73948145 | MS.gene06880:intron | 40.0% | |
CCTTGTAATTCAAGCAGCTA+GGG | - | chr3.1:73949670-73949689 | MS.gene06880:CDS | 40.0% | |
CTACATCGAAGAAAACTCCA+GGG | + | chr3.1:73947836-73947855 | None:intergenic | 40.0% | |
CTGATCCCATTAAGTGGAAT+CGG | - | chr3.1:73948048-73948067 | MS.gene06880:intron | 40.0% | |
CTTGCAGAAAGTGGGAAAAT+TGG | - | chr3.1:73946630-73946649 | MS.gene06880:CDS | 40.0% | |
GCAAGTATAAGACATCCTGA+TGG | + | chr3.1:73947061-73947080 | None:intergenic | 40.0% | |
GGCACAGAAAGCTATAGTAT+AGG | + | chr3.1:73948531-73948550 | None:intergenic | 40.0% | |
TAAATTGGACATGTGCTTGG+TGG | - | chr3.1:73947355-73947374 | MS.gene06880:intron | 40.0% | |
TATGCAGTACTTGAGGGAAA+AGG | - | chr3.1:73949511-73949530 | MS.gene06880:CDS | 40.0% | |
TATGCGCGAAAAGTTTCACA+GGG | - | chr3.1:73947241-73947260 | MS.gene06880:CDS | 40.0% | |
TATGGATAGAGCTAGAGCTA+TGG | - | chr3.1:73946953-73946972 | MS.gene06880:intron | 40.0% | |
TCTAAGCTTCCTCAAATGCA+TGG | - | chr3.1:73947512-73947531 | MS.gene06880:intron | 40.0% | |
TCTACATCGAAGAAAACTCC+AGG | + | chr3.1:73947837-73947856 | None:intergenic | 40.0% | |
TGTTTCTTTGGCATCAGAGA+AGG | - | chr3.1:73949640-73949659 | MS.gene06880:CDS | 40.0% | |
TTATGCGCGAAAAGTTTCAC+AGG | - | chr3.1:73947240-73947259 | MS.gene06880:CDS | 40.0% | |
TTATTGCTAAGTAGCAGAGG+AGG | + | chr3.1:73949281-73949300 | None:intergenic | 40.0% | |
! | ATATGAGTCTTGTCATGTGG+GGG | - | chr3.1:73947126-73947145 | MS.gene06880:intron | 40.0% |
! | CTTTAGCCGATTCCACTTAA+TGG | + | chr3.1:73948057-73948076 | None:intergenic | 40.0% |
! | GACGACAATGATAGTGAAAC+AGG | - | chr3.1:73947098-73947117 | MS.gene06880:intron | 40.0% |
! | GGGTACAAGTTCTGTTTCTT+TGG | - | chr3.1:73949628-73949647 | MS.gene06880:CDS | 40.0% |
! | TGCGAGGTTTAAGAAAGCAT+TGG | - | chr3.1:73947688-73947707 | MS.gene06880:intron | 40.0% |
! | TGTTGTTGTTGTAATGGTGG+GGG | + | chr3.1:73948015-73948034 | None:intergenic | 40.0% |
! | TTTCACAGGGTGTCCTTAAT+TGG | - | chr3.1:73947254-73947273 | MS.gene06880:intron | 40.0% |
! | TTTGAGAGCTCATCGATTGA+TGG | + | chr3.1:73946927-73946946 | None:intergenic | 40.0% |
!! | ATGATTGGGTTGAATGCAAG+AGG | - | chr3.1:73946805-73946824 | MS.gene06880:CDS | 40.0% |
!! | CTCAAAGTTTAGTTCTACCC+TGG | - | chr3.1:73947816-73947835 | MS.gene06880:intron | 40.0% |
!! | GAGCTATGGATGATTTTAGC+GGG | - | chr3.1:73946967-73946986 | MS.gene06880:intron | 40.0% |
!! | GCCATTAAACTTTTTCCCAG+GGG | - | chr3.1:73949379-73949398 | MS.gene06880:CDS | 40.0% |
!! | TTGTTTCTGAAACTCCCTCA+AGG | + | chr3.1:73947760-73947779 | None:intergenic | 40.0% |
!!! | GGAAAAGGCATTTCCTTTTC+TGG | - | chr3.1:73949526-73949545 | MS.gene06880:CDS | 40.0% |
AAATTTATTCGCCGTCAGCC+TGG | - | chr3.1:73949452-73949471 | MS.gene06880:CDS | 45.0% | |
AACAAAATTCTCGAGGAGGG+AGG | - | chr3.1:73947779-73947798 | MS.gene06880:intron | 45.0% | |
ACGTAGCCATTTGCCATACT+TGG | - | chr3.1:73947896-73947915 | MS.gene06880:intron | 45.0% | |
AGCCATTTGCCATACTTGGT+TGG | - | chr3.1:73947900-73947919 | MS.gene06880:intron | 45.0% | |
AGCTGCCCATACATTTGGAT+AGG | + | chr3.1:73946741-73946760 | None:intergenic | 45.0% | |
CATAAAAGGGTAGAACAGGC+AGG | + | chr3.1:73948370-73948389 | None:intergenic | 45.0% | |
CCATTTGCCATACTTGGTTG+GGG | - | chr3.1:73947902-73947921 | MS.gene06880:intron | 45.0% | |
CCCTAGCTGCTTGAATTACA+AGG | + | chr3.1:73949673-73949692 | None:intergenic | 45.0% | |
CCTAACTCACCATGCATTTG+AGG | + | chr3.1:73947524-73947543 | None:intergenic | 45.0% | |
CCTCAAATGCATGGTGAGTT+AGG | - | chr3.1:73947521-73947540 | MS.gene06880:intron | 45.0% | |
CCTGGCTAAAAAGCAATGAC+AGG | + | chr3.1:73949316-73949335 | None:intergenic | 45.0% | |
CGATTCCACTTAATGGGATC+AGG | + | chr3.1:73948050-73948069 | None:intergenic | 45.0% | |
CTCTGGTTGACAAAAGATGC+TGG | + | chr3.1:73948685-73948704 | None:intergenic | 45.0% | |
CTGTAGCACTTGCAGAAAGT+GGG | - | chr3.1:73946622-73946641 | MS.gene06880:CDS | 45.0% | |
CTTACCAGCACCTTCATTTC+AGG | - | chr3.1:73948243-73948262 | MS.gene06880:intron | 45.0% | |
GAAGAAGCTGCCCATACATT+TGG | + | chr3.1:73946746-73946765 | None:intergenic | 45.0% | |
GCAGAGGATTGCTTAAAGCT+GGG | - | chr3.1:73949576-73949595 | MS.gene06880:CDS | 45.0% | |
GCCATTTGCCATACTTGGTT+GGG | - | chr3.1:73947901-73947920 | MS.gene06880:intron | 45.0% | |
GCCCCTGGGAAAAAGTTTAA+TGG | + | chr3.1:73949383-73949402 | None:intergenic | 45.0% | |
GCCTTGTAATTCAAGCAGCT+AGG | - | chr3.1:73949669-73949688 | MS.gene06880:CDS | 45.0% | |
GCGTGATATGCAGTACTTGA+GGG | - | chr3.1:73949505-73949524 | MS.gene06880:CDS | 45.0% | |
GCTACAGCAGCTTCGTTAAT+AGG | + | chr3.1:73946609-73946628 | None:intergenic | 45.0% | |
TGCAGAGGATTGCTTAAAGC+TGG | - | chr3.1:73949575-73949594 | MS.gene06880:CDS | 45.0% | |
TGCGAAGAGCAAACTCAAGT+AGG | + | chr3.1:73947013-73947032 | None:intergenic | 45.0% | |
TGCTGTGAGGCAAGATGATT+GGG | - | chr3.1:73946791-73946810 | MS.gene06880:CDS | 45.0% | |
TGGCCCATTCACTATCTGAT+CGG | + | chr3.1:73949478-73949497 | None:intergenic | 45.0% | |
TGGCCGATCAGATAGTGAAT+GGG | - | chr3.1:73949472-73949491 | MS.gene06880:CDS | 45.0% | |
TGTGCACAGTTACAGATAGG+TGG | - | chr3.1:73947468-73947487 | MS.gene06880:intron | 45.0% | |
TTGCTGTGAGGCAAGATGAT+TGG | - | chr3.1:73946790-73946809 | MS.gene06880:CDS | 45.0% | |
! | AGAACCTGAAATGAAGGTGC+TGG | + | chr3.1:73948250-73948269 | None:intergenic | 45.0% |
! | CATGTGCTTGGTGGTAATTG+AGG | - | chr3.1:73947364-73947383 | MS.gene06880:intron | 45.0% |
! | CATTGAAGCAGGGAGACTTT+TGG | - | chr3.1:73949085-73949104 | MS.gene06880:CDS | 45.0% |
! | CTTGAGTTTGCTCTTCGCAA+AGG | - | chr3.1:73947014-73947033 | MS.gene06880:intron | 45.0% |
! | GCTTGGTGGTAATTGAGGAA+GGG | - | chr3.1:73947369-73947388 | MS.gene06880:intron | 45.0% |
! | TATGAGTCTTGTCATGTGGG+GGG | - | chr3.1:73947127-73947146 | MS.gene06880:intron | 45.0% |
! | TGCTTGGTGGTAATTGAGGA+AGG | - | chr3.1:73947368-73947387 | MS.gene06880:intron | 45.0% |
!! | AAATGAAGGTGCTGGTAAGC+AGG | + | chr3.1:73948242-73948261 | None:intergenic | 45.0% |
!! | AGGAACTGTTTCTGGGATAG+AGG | + | chr3.1:73946721-73946740 | None:intergenic | 45.0% |
!! | TTGGGTTGAATGCAAGAGGA+TGG | - | chr3.1:73946809-73946828 | MS.gene06880:CDS | 45.0% |
!!! | CCTGTCATTGCTTTTTAGCC+AGG | - | chr3.1:73949313-73949332 | MS.gene06880:CDS | 45.0% |
AAAGGGTAGAACAGGCAGGT+TGG | + | chr3.1:73948366-73948385 | None:intergenic | 50.0% | |
AGGGGCTCAGTTAGACGAAA+AGG | - | chr3.1:73949397-73949416 | MS.gene06880:CDS | 50.0% | |
ATAGTGAATGGGCCAGCATG+TGG | - | chr3.1:73949483-73949502 | MS.gene06880:CDS | 50.0% | |
ATGTATGGGCAGCTTCTTCC+TGG | - | chr3.1:73946747-73946766 | MS.gene06880:CDS | 50.0% | |
CATTCACTATCTGATCGGCC+AGG | + | chr3.1:73949473-73949492 | None:intergenic | 50.0% | |
CCAAGCCTGATCCCATTAAG+TGG | - | chr3.1:73948042-73948061 | MS.gene06880:intron | 50.0% | |
CCACTTAATGGGATCAGGCT+TGG | + | chr3.1:73948045-73948064 | None:intergenic | 50.0% | |
CCCCAACCAAGTATGGCAAA+TGG | + | chr3.1:73947905-73947924 | None:intergenic | 50.0% | |
CTGGCCGATCAGATAGTGAA+TGG | - | chr3.1:73949471-73949490 | MS.gene06880:CDS | 50.0% | |
GAGCAAACTCAAGTAGGCTC+AGG | + | chr3.1:73947007-73947026 | None:intergenic | 50.0% | |
GCTCAACAACACAGTTCCAC+AGG | + | chr3.1:73948848-73948867 | None:intergenic | 50.0% | |
GCTGTAGCACTTGCAGAAAG+TGG | - | chr3.1:73946621-73946640 | MS.gene06880:CDS | 50.0% | |
GGCGTGATATGCAGTACTTG+AGG | - | chr3.1:73949504-73949523 | MS.gene06880:CDS | 50.0% | |
GGGCAAAACTATAAGCTGCG+AGG | - | chr3.1:73947672-73947691 | MS.gene06880:intron | 50.0% | |
GGGGCTCAGTTAGACGAAAA+GGG | - | chr3.1:73949398-73949417 | MS.gene06880:CDS | 50.0% | |
TGAGTATTCTGCCAGCAGTC+TGG | - | chr3.1:73948769-73948788 | MS.gene06880:CDS | 50.0% | |
TGAGTTGCAGCAGTTCCATC+AGG | - | chr3.1:73947043-73947062 | MS.gene06880:intron | 50.0% | |
TGCTGGTGCAAGACCGAAAA+AGG | + | chr3.1:73948668-73948687 | None:intergenic | 50.0% | |
TGTATGGGCAGCTTCTTCCT+GGG | - | chr3.1:73946748-73946767 | MS.gene06880:CDS | 50.0% | |
TTTCGTCTAACTGAGCCCCT+GGG | + | chr3.1:73949397-73949416 | None:intergenic | 50.0% | |
! | CTGAAGGGCACATTGAAGCA+GGG | - | chr3.1:73949075-73949094 | MS.gene06880:CDS | 50.0% |
! | GGCATTTCCTTTTCTGGACC+TGG | - | chr3.1:73949532-73949551 | MS.gene06880:CDS | 50.0% |
! | GTGGAACTGTGTTGTTGAGC+TGG | - | chr3.1:73948848-73948867 | MS.gene06880:CDS | 50.0% |
! | TTTTCGTCTAACTGAGCCCC+TGG | + | chr3.1:73949398-73949417 | None:intergenic | 50.0% |
CTGCATATCACGCCACATGC+TGG | + | chr3.1:73949498-73949517 | None:intergenic | 55.0% | |
TATCTGATCGGCCAGGCTGA+CGG | + | chr3.1:73949466-73949485 | None:intergenic | 55.0% | |
TGCCTCACAGCAACACCAGA+CGG | + | chr3.1:73946783-73946802 | None:intergenic | 55.0% | |
! | GCTGAAGGGCACATTGAAGC+AGG | - | chr3.1:73949074-73949093 | MS.gene06880:CDS | 55.0% |
!! | TTCCGTCTGGTGTTGCTGTG+AGG | - | chr3.1:73946778-73946797 | MS.gene06880:CDS | 55.0% |
ATGGGCAGCTTCTTCCTGGG+AGG | - | chr3.1:73946751-73946770 | MS.gene06880:CDS | 60.0% | |
CCAGACGGAAAAGACCTCCC+AGG | + | chr3.1:73946768-73946787 | None:intergenic | 60.0% | |
TTCTCGAGGAGGGAGGTCTG+CGG | - | chr3.1:73947786-73947805 | MS.gene06880:intron | 60.0% | |
! | CCTGGGAGGTCTTTTCCGTC+TGG | - | chr3.1:73946765-73946784 | MS.gene06880:CDS | 60.0% |
TCTCGAGGAGGGAGGTCTGC+GGG | - | chr3.1:73947787-73947806 | MS.gene06880:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 73946569 | 73949730 | 73946569 | ID=MS.gene06880 |
chr3.1 | mRNA | 73946569 | 73949730 | 73946569 | ID=MS.gene06880.t1;Parent=MS.gene06880 |
chr3.1 | exon | 73948766 | 73949730 | 73948766 | ID=MS.gene06880.t1.exon1;Parent=MS.gene06880.t1 |
chr3.1 | CDS | 73948766 | 73949730 | 73948766 | ID=cds.MS.gene06880.t1;Parent=MS.gene06880.t1 |
chr3.1 | exon | 73947181 | 73947269 | 73947181 | ID=MS.gene06880.t1.exon2;Parent=MS.gene06880.t1 |
chr3.1 | CDS | 73947181 | 73947269 | 73947181 | ID=cds.MS.gene06880.t1;Parent=MS.gene06880.t1 |
chr3.1 | exon | 73946569 | 73946928 | 73946569 | ID=MS.gene06880.t1.exon3;Parent=MS.gene06880.t1 |
chr3.1 | CDS | 73946569 | 73946928 | 73946569 | ID=cds.MS.gene06880.t1;Parent=MS.gene06880.t1 |
Gene Sequence |
Protein sequence |