Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068860.t1 | XP_003610102.1 | 87.6 | 250 | 26 | 2 | 2 | 251 | 4 | 248 | 3.80E-117 | 431 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068860.t1 | Q9ZQ19 | 42.4 | 255 | 137 | 6 | 2 | 253 | 5 | 252 | 1.1e-48 | 194.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068860.t1 | G7JVE0 | 87.6 | 250 | 26 | 2 | 2 | 251 | 4 | 248 | 2.7e-117 | 431.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051914 | MS.gene068860 | 0.809395 | 1.93E-50 | -1.69E-46 |
MS.gene053173 | MS.gene068860 | 0.801944 | 7.09E-49 | -1.69E-46 |
MS.gene054593 | MS.gene068860 | 0.809491 | 1.84E-50 | -1.69E-46 |
MS.gene055617 | MS.gene068860 | 0.802208 | 6.26E-49 | -1.69E-46 |
MS.gene058853 | MS.gene068860 | 0.813323 | 2.71E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068860.t1 | MTR_4g127950 | 87.600 | 250 | 26 | 2 | 2 | 251 | 4 | 248 | 1.28e-159 | 444 |
MS.gene068860.t1 | MTR_4g127950 | 92.174 | 230 | 17 | 1 | 2 | 231 | 4 | 232 | 2.55e-158 | 439 |
MS.gene068860.t1 | MTR_1g009890 | 39.921 | 253 | 141 | 4 | 2 | 253 | 5 | 247 | 3.40e-60 | 191 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068860.t1 | AT3G02920 | 44.269 | 253 | 130 | 4 | 4 | 253 | 6 | 250 | 2.20e-69 | 215 |
MS.gene068860.t1 | AT3G02920 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 1.92e-67 | 208 |
MS.gene068860.t1 | AT3G02920 | 46.875 | 224 | 112 | 3 | 4 | 224 | 6 | 225 | 1.92e-67 | 208 |
MS.gene068860.t1 | AT2G24490 | 42.353 | 255 | 137 | 6 | 2 | 253 | 5 | 252 | 2.89e-63 | 199 |
MS.gene068860.t1 | AT2G24490 | 42.353 | 255 | 137 | 6 | 2 | 253 | 5 | 252 | 2.89e-63 | 199 |
Find 64 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTATATAATTCGAAGTTAC+AGG | 0.284161 | 8.4:-6625514 | MS.gene068860:intron |
GGAATGTATGTGCGTTTATA+TGG | 0.285958 | 8.4:-6625812 | MS.gene068860:CDS |
GAACAATCTTGGAGTTTCTT+TGG | 0.301777 | 8.4:-6623732 | MS.gene068860:CDS |
GCTGATTGGGGATGCTAGCC+TGG | 0.316731 | 8.4:+6624652 | None:intergenic |
TTGGGAGCATGTTGCTGATT+GGG | 0.326890 | 8.4:+6624639 | None:intergenic |
GAATCTATTGCGAACAATCT+TGG | 0.341410 | 8.4:-6623743 | MS.gene068860:CDS |
GGCAGTGCTTTGTATGGAAT+TGG | 0.344322 | 8.4:+6624620 | None:intergenic |
GGTAGGGTTTGCAACAAATC+TGG | 0.360046 | 8.4:-6626815 | MS.gene068860:CDS |
TCTGTCCAGGTTACTCTTGT+TGG | 0.363119 | 8.4:-6626836 | MS.gene068860:intron |
GAACAATCGAGTGTACTAAA+TGG | 0.372337 | 8.4:-6626751 | MS.gene068860:intron |
TATGGTTGACTTACTTGATT+TGG | 0.375750 | 8.4:+6624567 | None:intergenic |
GACGGTAACGCCGCTTTCTC+CGG | 0.395800 | 8.4:-6627239 | MS.gene068860:CDS |
CCTGAGAGAGAAAATACTTA+AGG | 0.400373 | 8.4:+6625760 | None:intergenic |
ATTGGGAGCATGTTGCTGAT+TGG | 0.409358 | 8.4:+6624638 | None:intergenic |
CATAAATGCACTCAAGGAAA+TGG | 0.411902 | 8.4:+6625541 | None:intergenic |
CGGCGGTTTCATGCCTTCTC+AGG | 0.416064 | 8.4:-6627216 | MS.gene068860:CDS |
CCAGGTTACTCTTGTTGGTA+GGG | 0.423374 | 8.4:-6626831 | MS.gene068860:intron |
AGAGGATTCACCGCCTTGAT+TGG | 0.430570 | 8.4:+6627193 | None:intergenic |
TCCAGGTTACTCTTGTTGGT+AGG | 0.433239 | 8.4:-6626832 | MS.gene068860:intron |
GCAGTGCTTTGTATGGAATT+GGG | 0.465281 | 8.4:+6624621 | None:intergenic |
ACTTACTTGATTTGGTGGAA+TGG | 0.471859 | 8.4:+6624575 | None:intergenic |
ATGCCTTCTCAGGCCAATCA+AGG | 0.473622 | 8.4:-6627206 | MS.gene068860:CDS |
ATCTCATTGAAGTCAGTAAC+GGG | 0.478767 | 8.4:+6625570 | None:intergenic |
TTACTGATGTTTCAGGGCAA+TGG | 0.480244 | 8.4:-6623782 | MS.gene068860:intron |
AACGCCGCTTTCTCCGGCGG+CGG | 0.487082 | 8.4:-6627233 | MS.gene068860:CDS |
TCCACTGCCATTGCATCAGC+AGG | 0.490315 | 8.4:+6626614 | None:intergenic |
CGTTTATATGGACAATTGAA+AGG | 0.493252 | 8.4:-6625800 | MS.gene068860:CDS |
TTTGTACTTGACGATGGCAC+TGG | 0.500314 | 8.4:-6626773 | MS.gene068860:CDS |
ATGTTTCAGGGCAATGGAGG+GGG | 0.500675 | 8.4:-6623776 | MS.gene068860:intron |
GGTTGACTTACTTGATTTGG+TGG | 0.502710 | 8.4:+6624570 | None:intergenic |
CCGCCTTGATTGGCCTGAGA+AGG | 0.504121 | 8.4:+6627203 | None:intergenic |
TTCTCCGGTCAGCAGAATAA+TGG | 0.506082 | 8.4:-6624483 | MS.gene068860:CDS |
CAATCAAGTGATGATAGAAC+CGG | 0.507029 | 8.4:-6626955 | MS.gene068860:CDS |
TTTAAAATACACCTGTTTGT+GGG | 0.516085 | 8.4:+6624417 | None:intergenic |
ATACAAAGCACTGCCACAAA+AGG | 0.519488 | 8.4:-6624612 | MS.gene068860:CDS |
CTGATGTTTCAGGGCAATGG+AGG | 0.528490 | 8.4:-6623779 | MS.gene068860:intron |
CTGATTGGGGATGCTAGCCT+GGG | 0.532257 | 8.4:+6624653 | None:intergenic |
ATCCTCTCTCACTCCCTCCA+AGG | 0.534425 | 8.4:-6627177 | MS.gene068860:intron |
AACCTTGGAGGGAGTGAGAG+AGG | 0.538834 | 8.4:+6627175 | None:intergenic |
GATGAACATAAATGCACTCA+AGG | 0.548211 | 8.4:+6625535 | None:intergenic |
TGATGTTTCAGGGCAATGGA+GGG | 0.548490 | 8.4:-6623778 | MS.gene068860:intron |
TCACGAACCTGCTGATGCAA+TGG | 0.548561 | 8.4:-6626621 | MS.gene068860:CDS |
GAAACCGCCGCCGGAGAAAG+CGG | 0.554313 | 8.4:+6627229 | None:intergenic |
GGTCTTACTATTGACGGTGT+TGG | 0.564776 | 8.4:-6626934 | MS.gene068860:CDS |
ACCTGCTGATGCAATGGCAG+TGG | 0.566074 | 8.4:-6626615 | MS.gene068860:CDS |
AATGCACTCAAGGAAATGGC+TGG | 0.568941 | 8.4:+6625545 | None:intergenic |
TGGGAGCATGTTGCTGATTG+GGG | 0.569773 | 8.4:+6624640 | None:intergenic |
GATGTTTCAGGGCAATGGAG+GGG | 0.572668 | 8.4:-6623777 | MS.gene068860:intron |
CATCACTTGATTGAAGAGCA+TGG | 0.578483 | 8.4:+6626965 | None:intergenic |
CTGACCATTATTCTGCTGAC+CGG | 0.581910 | 8.4:+6624479 | None:intergenic |
AACACCGTCAATAGTAAGAC+CGG | 0.588874 | 8.4:+6626936 | None:intergenic |
AGAACTGAGAAGAACCTTGG+AGG | 0.589879 | 8.4:+6627163 | None:intergenic |
TTTAAGTTTGTACTTGACGA+TGG | 0.593316 | 8.4:-6626779 | MS.gene068860:CDS |
AGAACCGGTCTTACTATTGA+CGG | 0.593890 | 8.4:-6626940 | MS.gene068860:CDS |
ATATTTGTGGCAGCATACCC+AGG | 0.594726 | 8.4:-6624670 | MS.gene068860:intron |
GGTAACGCCGCTTTCTCCGG+CGG | 0.597825 | 8.4:-6627236 | MS.gene068860:CDS |
AATCTCATTGAAGTCAGTAA+CGG | 0.599498 | 8.4:+6625569 | None:intergenic |
GAACTGAGAAGAACCTTGGA+GGG | 0.608680 | 8.4:+6627164 | None:intergenic |
GTTACCGTCGAACTGACTCA+TGG | 0.626404 | 8.4:+6627253 | None:intergenic |
TCAGAAGAGTGTTCATGACT+TGG | 0.632574 | 8.4:-6624460 | MS.gene068860:CDS |
AGAAGGCATGAAACCGCCGC+CGG | 0.632650 | 8.4:+6627220 | None:intergenic |
TTGATCTGCTTGATCGTCAG+CGG | 0.639696 | 8.4:+6626988 | None:intergenic |
GGCACCATGAGTCAGTTCGA+CGG | 0.714184 | 8.4:-6627257 | None:intergenic |
CCTTCTCAGGCCAATCAAGG+CGG | 0.735731 | 8.4:-6627203 | MS.gene068860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAAAGTTAAAGGTTTA+GGG | + | chr8.4:6625013-6625032 | None:intergenic | 15.0% |
!! | TAAGATTATTAAGAAGAAAA+TGG | + | chr8.4:6623842-6623861 | None:intergenic | 15.0% |
!!! | ATTTTATTTTGTAATGTCTA+GGG | + | chr8.4:6625582-6625601 | None:intergenic | 15.0% |
!!! | TATTTTATTTTGTAATGTCT+AGG | + | chr8.4:6625583-6625602 | None:intergenic | 15.0% |
!!! | TTTTTTTCCATAAAAGAAAA+AGG | - | chr8.4:6624862-6624881 | MS.gene068860:intron | 15.0% |
!! | GAAAATAAGATACATGTTTA+GGG | - | chr8.4:6626071-6626090 | MS.gene068860:intron | 20.0% |
!! | GATTAAAAAGTTAAAGGTTT+AGG | + | chr8.4:6625014-6625033 | None:intergenic | 20.0% |
!! | GTCAACTAGTAAAAAATTTA+CGG | - | chr8.4:6626883-6626902 | MS.gene068860:intron | 20.0% |
!! | TAAGCAGAAAATAAAAGATA+TGG | + | chr8.4:6626427-6626446 | None:intergenic | 20.0% |
!! | TGAAAATAAGATACATGTTT+AGG | - | chr8.4:6626070-6626089 | MS.gene068860:intron | 20.0% |
!! | TTATACTTTCTATGTAAGTA+AGG | - | chr8.4:6624475-6624494 | MS.gene068860:CDS | 20.0% |
!!! | AAAATTCCATTTTCATTGTT+AGG | - | chr8.4:6625135-6625154 | MS.gene068860:intron | 20.0% |
!!! | AACATCAGTAACAAAATTTT+AGG | + | chr8.4:6627182-6627201 | None:intergenic | 20.0% |
!!! | ATTAAATTACTGTTTCTTGT+TGG | + | chr8.4:6626146-6626165 | None:intergenic | 20.0% |
!!! | CAGTGACAAAAAATTATTTT+TGG | - | chr8.4:6626928-6626947 | MS.gene068860:CDS | 20.0% |
!!! | CTTTGTTATTTCTTGAATTT+CGG | - | chr8.4:6626644-6626663 | MS.gene068860:intron | 20.0% |
!!! | TCTTATAACTAAGTTTTACT+AGG | - | chr8.4:6624806-6624825 | MS.gene068860:intron | 20.0% |
!!! | TGTTTTACTTTGTTAGAATT+GGG | - | chr8.4:6627124-6627143 | MS.gene068860:intron | 20.0% |
!!! | TTTCTTTCCTTTTTCTTTTA+TGG | + | chr8.4:6624872-6624891 | None:intergenic | 20.0% |
!!! | TTTTTATAGTGTGAATTTTG+TGG | + | chr8.4:6625651-6625670 | None:intergenic | 20.0% |
! | AACACAGATAAATAACAGAT+TGG | + | chr8.4:6627108-6627127 | None:intergenic | 25.0% |
! | AACTAGTAAAAAATTTACGG+TGG | - | chr8.4:6626886-6626905 | MS.gene068860:intron | 25.0% |
! | AACTTAGTTATAAGAAGAAG+CGG | + | chr8.4:6624801-6624820 | None:intergenic | 25.0% |
! | ACGATAAATAAATAAACCAG+AGG | + | chr8.4:6625088-6625107 | None:intergenic | 25.0% |
! | ACTCTCAGTTGTATAAAATT+AGG | - | chr8.4:6625678-6625697 | MS.gene068860:intron | 25.0% |
! | ATAAATAAATAAACCAGAGG+GGG | + | chr8.4:6625085-6625104 | None:intergenic | 25.0% |
! | ATTGCATTTAGTACTATACT+TGG | - | chr8.4:6624434-6624453 | MS.gene068860:CDS | 25.0% |
! | CAAAGGGATTAAAAAGTTAA+AGG | + | chr8.4:6625020-6625039 | None:intergenic | 25.0% |
! | CATTTGCCATTCAAAATAAA+AGG | + | chr8.4:6624940-6624959 | None:intergenic | 25.0% |
! | CGAAATTCAAGAAATAACAA+AGG | + | chr8.4:6626646-6626665 | None:intergenic | 25.0% |
! | CGATAAATAAATAAACCAGA+GGG | + | chr8.4:6625087-6625106 | None:intergenic | 25.0% |
! | CTGAAAACTTAATAGTAATC+TGG | + | chr8.4:6627009-6627028 | None:intergenic | 25.0% |
! | GATAAATAAATAAACCAGAG+GGG | + | chr8.4:6625086-6625105 | None:intergenic | 25.0% |
! | GGGTGATTATAATATCAAAA+TGG | + | chr8.4:6624679-6624698 | None:intergenic | 25.0% |
! | GTACTAAATGCAATACAATA+AGG | + | chr8.4:6624428-6624447 | None:intergenic | 25.0% |
! | TAACAGCTGTTATATGTTAT+AGG | + | chr8.4:6626613-6626632 | None:intergenic | 25.0% |
! | TCTATATAATTCGAAGTTAC+AGG | - | chr8.4:6625459-6625478 | MS.gene068860:intron | 25.0% |
!! | AAGTAGAAAACACACAATTT+TGG | + | chr8.4:6626832-6626851 | None:intergenic | 25.0% |
!! | AATTTTGTTACTGATGTTTC+AGG | - | chr8.4:6627184-6627203 | MS.gene068860:CDS | 25.0% |
!! | AGTAGAAAACACACAATTTT+GGG | + | chr8.4:6626831-6626850 | None:intergenic | 25.0% |
!! | ATTTTGTTACTGATGTTTCA+GGG | - | chr8.4:6627185-6627204 | MS.gene068860:CDS | 25.0% |
!! | CATGTAATTGATGTGTTTTA+GGG | - | chr8.4:6623918-6623937 | MS.gene068860:intron | 25.0% |
!! | GTGTTTTACTTTGTTAGAAT+TGG | - | chr8.4:6627123-6627142 | MS.gene068860:intron | 25.0% |
!! | TATAAAGAACTAATTTGCCT+AGG | - | chr8.4:6626189-6626208 | MS.gene068860:intron | 25.0% |
!! | TCATGTAATTGATGTGTTTT+AGG | - | chr8.4:6623917-6623936 | MS.gene068860:intron | 25.0% |
!! | TGTATGTTACCTTTTCTTTA+CGG | - | chr8.4:6624390-6624409 | MS.gene068860:intron | 25.0% |
!! | TTTAAAATACACCTGTTTGT+GGG | + | chr8.4:6626559-6626578 | None:intergenic | 25.0% |
!!! | AGTAACAAAATTTTAGGTTG+TGG | + | chr8.4:6627176-6627195 | None:intergenic | 25.0% |
!!! | ATTTAGGTTTTGAATTTGAC+AGG | + | chr8.4:6625794-6625813 | None:intergenic | 25.0% |
!!! | TTTAGGTTTTGAATTTGACA+GGG | + | chr8.4:6625793-6625812 | None:intergenic | 25.0% |
!!! | TTTTAAAATACACCTGTTTG+TGG | + | chr8.4:6626560-6626579 | None:intergenic | 25.0% |
!!! | TTTTTGGCAATTTAACTTGA+TGG | - | chr8.4:6626944-6626963 | MS.gene068860:CDS | 25.0% |
AACATCAATTAGACATGCTA+GGG | - | chr8.4:6623867-6623886 | MS.gene068860:intron | 30.0% | |
AATCTCATTGAAGTCAGTAA+CGG | + | chr8.4:6625407-6625426 | None:intergenic | 30.0% | |
ACTTATAAGTCCATGTCTTT+AGG | + | chr8.4:6626106-6626125 | None:intergenic | 30.0% | |
AGAAAACACTAAGAATACCT+TGG | - | chr8.4:6625856-6625875 | MS.gene068860:intron | 30.0% | |
AGAAAGAAGAAAAAAAGTCG+TGG | - | chr8.4:6626024-6626043 | MS.gene068860:intron | 30.0% | |
AGAAATATGTGATTGCATTG+AGG | - | chr8.4:6624887-6624906 | MS.gene068860:intron | 30.0% | |
ATGTAAGTAAGGATAGGAAT+AGG | - | chr8.4:6624486-6624505 | MS.gene068860:CDS | 30.0% | |
CCTGAAAATGACACAAATTA+AGG | + | chr8.4:6625383-6625402 | None:intergenic | 30.0% | |
CGTTTATATGGACAATTGAA+AGG | - | chr8.4:6625173-6625192 | MS.gene068860:intron | 30.0% | |
CTATTGTGAATTACGATTTG+TGG | - | chr8.4:6624090-6624109 | MS.gene068860:intron | 30.0% | |
CTTTCTATGTAAGTAAGGAT+AGG | - | chr8.4:6624480-6624499 | MS.gene068860:CDS | 30.0% | |
GAAAGAAGAAAAAAAGTCGT+GGG | - | chr8.4:6626025-6626044 | MS.gene068860:intron | 30.0% | |
GATATTATAATCACCCTTGT+CGG | - | chr8.4:6624683-6624702 | MS.gene068860:intron | 30.0% | |
TACTTGGTTAATGTCTAATC+AGG | - | chr8.4:6624450-6624469 | MS.gene068860:CDS | 30.0% | |
TCCATTCCTAACAATGAAAA+TGG | + | chr8.4:6625144-6625163 | None:intergenic | 30.0% | |
TGCCATTCAAAATAAAAGGA+GGG | + | chr8.4:6624936-6624955 | None:intergenic | 30.0% | |
TGTCGTTAATCTATTACCAT+AGG | - | chr8.4:6625306-6625325 | MS.gene068860:intron | 30.0% | |
TGTTAGTTGAGAGTTAAGTT+AGG | - | chr8.4:6626676-6626695 | MS.gene068860:intron | 30.0% | |
TTAATAGTAATCTGGTGTGA+TGG | + | chr8.4:6627001-6627020 | None:intergenic | 30.0% | |
TTAGAATTGGGATTACTTGA+AGG | - | chr8.4:6627136-6627155 | MS.gene068860:intron | 30.0% | |
TTATACAACTGAGAGTTTGA+AGG | + | chr8.4:6625674-6625693 | None:intergenic | 30.0% | |
TTGCCATTCAAAATAAAAGG+AGG | + | chr8.4:6624937-6624956 | None:intergenic | 30.0% | |
! | AATGATTTGTGCCATATTTG+TGG | - | chr8.4:6626290-6626309 | MS.gene068860:intron | 30.0% |
! | AGTTTTTATCATATCCTCAC+TGG | - | chr8.4:6626446-6626465 | MS.gene068860:intron | 30.0% |
! | GATGAGAAAGCATAAAAAAG+TGG | + | chr8.4:6624779-6624798 | None:intergenic | 30.0% |
! | GTATGTTACCTTTTCTTTAC+GGG | - | chr8.4:6624391-6624410 | MS.gene068860:intron | 30.0% |
! | GTTTACCTGTTTCATGTTTT+GGG | + | chr8.4:6625735-6625754 | None:intergenic | 30.0% |
! | TAACTTGATGGCATATTACA+TGG | - | chr8.4:6626956-6626975 | MS.gene068860:CDS | 30.0% |
! | TATGGTTGACTTACTTGATT+TGG | + | chr8.4:6626409-6626428 | None:intergenic | 30.0% |
! | TCCATTTTCATTGTTAGGAA+TGG | - | chr8.4:6625140-6625159 | MS.gene068860:intron | 30.0% |
! | TGTTTACCTGTTTCATGTTT+TGG | + | chr8.4:6625736-6625755 | None:intergenic | 30.0% |
! | TTATAGTGTGAATTTTGTGG+TGG | + | chr8.4:6625648-6625667 | None:intergenic | 30.0% |
! | TTTAAGTTTGTACTTGACGA+TGG | - | chr8.4:6624194-6624213 | MS.gene068860:intron | 30.0% |
! | TTTTGAATTTGACAGGGAAT+CGG | + | chr8.4:6625787-6625806 | None:intergenic | 30.0% |
!! | ATTTCTTGAATTTCGGTGTT+AGG | - | chr8.4:6626651-6626670 | MS.gene068860:intron | 30.0% |
!!! | AAATTTTAGGTTGTGGATAC+TGG | + | chr8.4:6627169-6627188 | None:intergenic | 30.0% |
!!! | CCTTAATTTGTGTCATTTTC+AGG | - | chr8.4:6625380-6625399 | MS.gene068860:intron | 30.0% |
!!! | TGACTTGGTGTTAGAATTTT+TGG | - | chr8.4:6626528-6626547 | MS.gene068860:intron | 30.0% |
AAAATTGCAGACTACAGATC+AGG | + | chr8.4:6624578-6624597 | None:intergenic | 35.0% | |
AAGGTGAATGAGCAAAAAGT+TGG | - | chr8.4:6626764-6626783 | MS.gene068860:CDS | 35.0% | |
AATATGTGATTGCATTGAGG+TGG | - | chr8.4:6624890-6624909 | MS.gene068860:intron | 35.0% | |
AATTAGACATGCTAGGGTTA+GGG | - | chr8.4:6623873-6623892 | MS.gene068860:intron | 35.0% | |
ACATAAATACATACCTCAGC+CGG | - | chr8.4:6625759-6625778 | MS.gene068860:intron | 35.0% | |
AGAGTTAAGTTAGGATTACC+TGG | - | chr8.4:6626685-6626704 | MS.gene068860:intron | 35.0% | |
AGCATGTCTAATTGATGTTG+CGG | + | chr8.4:6623866-6623885 | None:intergenic | 35.0% | |
ATAAGTCCATGTCTTTAGGT+GGG | + | chr8.4:6626102-6626121 | None:intergenic | 35.0% | |
ATCTCATTGAAGTCAGTAAC+GGG | + | chr8.4:6625406-6625425 | None:intergenic | 35.0% | |
CAAAAACTCATCGTTCACAA+AGG | + | chr8.4:6624318-6624337 | None:intergenic | 35.0% | |
CAACATCAATTAGACATGCT+AGG | - | chr8.4:6623866-6623885 | MS.gene068860:intron | 35.0% | |
CAATCAAGTGATGATAGAAC+CGG | - | chr8.4:6624018-6624037 | MS.gene068860:intron | 35.0% | |
CATAAATGCACTCAAGGAAA+TGG | + | chr8.4:6625435-6625454 | None:intergenic | 35.0% | |
CATTCAATCCCGTAAAGAAA+AGG | + | chr8.4:6624402-6624421 | None:intergenic | 35.0% | |
CCATTCAAAATAAAAGGAGG+GGG | + | chr8.4:6624934-6624953 | None:intergenic | 35.0% | |
CCTGAGAGAGAAAATACTTA+AGG | + | chr8.4:6625216-6625235 | None:intergenic | 35.0% | |
CTGGACAGAATAAAATTGTG+AGG | + | chr8.4:6624126-6624145 | None:intergenic | 35.0% | |
CTTCTCCATTCTTACAGATA+GGG | + | chr8.4:6624729-6624748 | None:intergenic | 35.0% | |
GAACAATCGAGTGTACTAAA+TGG | - | chr8.4:6624222-6624241 | MS.gene068860:intron | 35.0% | |
GAACAATCTTGGAGTTTCTT+TGG | - | chr8.4:6627241-6627260 | MS.gene068860:CDS | 35.0% | |
GAATCTATTGCGAACAATCT+TGG | - | chr8.4:6627230-6627249 | MS.gene068860:CDS | 35.0% | |
GACTTAACAAACACCAAACA+TGG | - | chr8.4:6624526-6624545 | MS.gene068860:intron | 35.0% | |
GAGTTAAGTTAGGATTACCT+GGG | - | chr8.4:6626686-6626705 | MS.gene068860:intron | 35.0% | |
GATGAACATAAATGCACTCA+AGG | + | chr8.4:6625441-6625460 | None:intergenic | 35.0% | |
GCCATTCAAAATAAAAGGAG+GGG | + | chr8.4:6624935-6624954 | None:intergenic | 35.0% | |
GGAATGTATGTGCGTTTATA+TGG | - | chr8.4:6625161-6625180 | MS.gene068860:intron | 35.0% | |
GTGATAATATGTTGTACTGC+AGG | + | chr8.4:6625920-6625939 | None:intergenic | 35.0% | |
GTTAATAGCCTTCTTGAACT+TGG | - | chr8.4:6626741-6626760 | MS.gene068860:intron | 35.0% | |
TAATAAACCCAGACTCAGAT+AGG | - | chr8.4:6625530-6625549 | MS.gene068860:CDS | 35.0% | |
TATAAGTCCATGTCTTTAGG+TGG | + | chr8.4:6626103-6626122 | None:intergenic | 35.0% | |
TCTTCTCCATTCTTACAGAT+AGG | + | chr8.4:6624730-6624749 | None:intergenic | 35.0% | |
! | AAGGTTTAGGGTTCAAATCT+TGG | + | chr8.4:6625001-6625020 | None:intergenic | 35.0% |
! | AGTATTTTCTCTCTCAGGTA+TGG | - | chr8.4:6625218-6625237 | MS.gene068860:intron | 35.0% |
! | ATGAGTTTTTGTCTACTTGC+AGG | - | chr8.4:6624327-6624346 | MS.gene068860:intron | 35.0% |
! | ATGCTAAAAACACTAGCCTA+TGG | + | chr8.4:6625325-6625344 | None:intergenic | 35.0% |
! | CCTTAAGTATTTTCTCTCTC+AGG | - | chr8.4:6625213-6625232 | MS.gene068860:intron | 35.0% |
! | CTCACAATTTTATTCTGTCC+AGG | - | chr8.4:6624124-6624143 | MS.gene068860:intron | 35.0% |
! | CTGCTGCAGTAAATTGATTT+AGG | + | chr8.4:6625810-6625829 | None:intergenic | 35.0% |
! | GCTCTTTGTCTGATGTTTTA+TGG | + | chr8.4:6626222-6626241 | None:intergenic | 35.0% |
! | GGACAATTGAAAGGTTTTCA+TGG | - | chr8.4:6625182-6625201 | MS.gene068860:intron | 35.0% |
! | GTCTGATGTTTTATGGTGTT+TGG | + | chr8.4:6626215-6626234 | None:intergenic | 35.0% |
! | TTGTGTTTTTCGTACTGTCT+AGG | + | chr8.4:6626718-6626737 | None:intergenic | 35.0% |
!! | AAAAGTCGTGGGTTTGTTAA+AGG | - | chr8.4:6626036-6626055 | MS.gene068860:intron | 35.0% |
!! | ACTTACTTGATTTGGTGGAA+TGG | + | chr8.4:6626401-6626420 | None:intergenic | 35.0% |
!! | ACTTTTTCTCTGTAGTTCTC+CGG | - | chr8.4:6626475-6626494 | MS.gene068860:intron | 35.0% |
!! | GTTTGGTGTTTGTTAAGTCT+AGG | + | chr8.4:6624525-6624544 | None:intergenic | 35.0% |
!! | TTGAGCTTGATAACCTTTTG+TGG | + | chr8.4:6626377-6626396 | None:intergenic | 35.0% |
AACAAACACCAAACATGGCT+TGG | - | chr8.4:6624531-6624550 | MS.gene068860:intron | 40.0% | |
AACACCGTCAATAGTAAGAC+CGG | + | chr8.4:6624040-6624059 | None:intergenic | 40.0% | |
AACATCTTGCAAAGTCTGAC+AGG | + | chr8.4:6625882-6625901 | None:intergenic | 40.0% | |
AAGTAAGGATAGGAATAGGC+TGG | - | chr8.4:6624490-6624509 | MS.gene068860:intron | 40.0% | |
AGAACCGGTCTTACTATTGA+CGG | - | chr8.4:6624033-6624052 | MS.gene068860:intron | 40.0% | |
ATAGCCTTCTTGAACTTGGA+AGG | - | chr8.4:6626745-6626764 | MS.gene068860:intron | 40.0% | |
CAATTAGACATGCTAGGGTT+AGG | - | chr8.4:6623872-6623891 | MS.gene068860:intron | 40.0% | |
CATCACTTGATTGAAGAGCA+TGG | + | chr8.4:6624011-6624030 | None:intergenic | 40.0% | |
CTCATCCCTATCTGTAAGAA+TGG | - | chr8.4:6624721-6624740 | MS.gene068860:intron | 40.0% | |
GATAGGGATGAGAATAAGTC+AGG | + | chr8.4:6624713-6624732 | None:intergenic | 40.0% | |
GCAGTGCTTTGTATGGAATT+GGG | + | chr8.4:6626355-6626374 | None:intergenic | 40.0% | |
TCATCTGCTAGCAAAACAAC+AGG | + | chr8.4:6625349-6625368 | None:intergenic | 40.0% | |
TTACTGATGTTTCAGGGCAA+TGG | - | chr8.4:6627191-6627210 | MS.gene068860:CDS | 40.0% | |
TTCACCTTCCAAGTTCAAGA+AGG | + | chr8.4:6626752-6626771 | None:intergenic | 40.0% | |
TTGGAGATTTACTTTCAGCG+AGG | + | chr8.4:6625608-6625627 | None:intergenic | 40.0% | |
TTTGTTAAGTCTAGGTCGGT+CGG | + | chr8.4:6624517-6624536 | None:intergenic | 40.0% | |
! | AGCCATGCAACGATTTTGTT+AGG | - | chr8.4:6625556-6625575 | MS.gene068860:CDS | 40.0% |
! | AGGGGGCAACTACAATTTTA+CGG | + | chr8.4:6624917-6624936 | None:intergenic | 40.0% |
! | AGTGCTGGATCATGCTAATT+TGG | + | chr8.4:6625971-6625990 | None:intergenic | 40.0% |
! | AGTGTGAATTTTGTGGTGGT+TGG | + | chr8.4:6625644-6625663 | None:intergenic | 40.0% |
! | GGTGTTTGTTAAGTCTAGGT+CGG | + | chr8.4:6624521-6624540 | None:intergenic | 40.0% |
! | TGTTTTATGGTGTTTGGCCT+AGG | + | chr8.4:6626209-6626228 | None:intergenic | 40.0% |
! | TTTTGTGGCAGTGCTTTGTA+TGG | + | chr8.4:6626362-6626381 | None:intergenic | 40.0% |
!! | ACCTGTTTCATGTTTTGGGT+TGG | + | chr8.4:6625731-6625750 | None:intergenic | 40.0% |
!! | ATACAAAGCACTGCCACAAA+AGG | - | chr8.4:6626361-6626380 | MS.gene068860:intron | 40.0% |
!! | GAAAAAGTACTGAACCAGTG+AGG | + | chr8.4:6626463-6626482 | None:intergenic | 40.0% |
!! | GGTTGACTTACTTGATTTGG+TGG | + | chr8.4:6626406-6626425 | None:intergenic | 40.0% |
!! | GGTTGGTGGAAAAGTATCTT+TGG | + | chr8.4:6625627-6625646 | None:intergenic | 40.0% |
!! | TCAGAAGAGTGTTCATGACT+TGG | - | chr8.4:6626513-6626532 | MS.gene068860:intron | 40.0% |
!!! | CCCCCTCCTTTTATTTTGAA+TGG | - | chr8.4:6624931-6624950 | MS.gene068860:intron | 40.0% |
!!! | CCTGTTTCATGTTTTGGGTT+GGG | + | chr8.4:6625730-6625749 | None:intergenic | 40.0% |
AATGCACTCAAGGAAATGGC+TGG | + | chr8.4:6625431-6625450 | None:intergenic | 45.0% | |
ACATGCTAGGGTTAGGGTTT+AGG | - | chr8.4:6623879-6623898 | MS.gene068860:intron | 45.0% | |
AGAACTGAGAAGAACCTTGG+AGG | + | chr8.4:6623813-6623832 | None:intergenic | 45.0% | |
AGCTCACTTGGTTGAGCAAA+GGG | + | chr8.4:6625036-6625055 | None:intergenic | 45.0% | |
ATAAGTCAGGCTAACCGACA+AGG | + | chr8.4:6624700-6624719 | None:intergenic | 45.0% | |
ATATTTGTGGCAGCATACCC+AGG | - | chr8.4:6626303-6626322 | MS.gene068860:intron | 45.0% | |
CATGCTAGGGTTAGGGTTTA+GGG | - | chr8.4:6623880-6623899 | MS.gene068860:intron | 45.0% | |
CCAGGTTACTCTTGTTGGTA+GGG | - | chr8.4:6624142-6624161 | MS.gene068860:intron | 45.0% | |
CCCAACCCAAAACATGAAAC+AGG | - | chr8.4:6625727-6625746 | MS.gene068860:intron | 45.0% | |
CTGACCATTATTCTGCTGAC+CGG | + | chr8.4:6626497-6626516 | None:intergenic | 45.0% | |
GAACTGAGAAGAACCTTGGA+GGG | + | chr8.4:6623812-6623831 | None:intergenic | 45.0% | |
GGACTAACACTTCAAGGCAT+AGG | - | chr8.4:6624552-6624571 | MS.gene068860:intron | 45.0% | |
GGCAGTGCTTTGTATGGAAT+TGG | + | chr8.4:6626356-6626375 | None:intergenic | 45.0% | |
GGCCTAACAAAATCGTTGCA+TGG | + | chr8.4:6625561-6625580 | None:intergenic | 45.0% | |
GGCTAATCCTATCTGAGTCT+GGG | + | chr8.4:6625540-6625559 | None:intergenic | 45.0% | |
GGTAGGGTTTGCAACAAATC+TGG | - | chr8.4:6624158-6624177 | MS.gene068860:intron | 45.0% | |
GGTCTTACTATTGACGGTGT+TGG | - | chr8.4:6624039-6624058 | MS.gene068860:intron | 45.0% | |
GTGAGAACTGAGAAGAACCT+TGG | + | chr8.4:6623816-6623835 | None:intergenic | 45.0% | |
GTGTTAGTCCAAGCCATGTT+TGG | + | chr8.4:6624542-6624561 | None:intergenic | 45.0% | |
TAAGTCAGGCTAACCGACAA+GGG | + | chr8.4:6624699-6624718 | None:intergenic | 45.0% | |
TAGCTCACTTGGTTGAGCAA+AGG | + | chr8.4:6625037-6625056 | None:intergenic | 45.0% | |
TCCAGGTTACTCTTGTTGGT+AGG | - | chr8.4:6624141-6624160 | MS.gene068860:intron | 45.0% | |
TCTGTCCAGGTTACTCTTGT+TGG | - | chr8.4:6624137-6624156 | MS.gene068860:intron | 45.0% | |
TGATGTTTCAGGGCAATGGA+GGG | - | chr8.4:6627195-6627214 | MS.gene068860:CDS | 45.0% | |
TGGCTAATCCTATCTGAGTC+TGG | + | chr8.4:6625541-6625560 | None:intergenic | 45.0% | |
TGGGTATGCTGCCACAAATA+TGG | + | chr8.4:6626304-6626323 | None:intergenic | 45.0% | |
TTCTCCGGTCAGCAGAATAA+TGG | - | chr8.4:6626490-6626509 | MS.gene068860:intron | 45.0% | |
TTGATCTGCTTGATCGTCAG+CGG | + | chr8.4:6623988-6624007 | None:intergenic | 45.0% | |
TTTGTACTTGACGATGGCAC+TGG | - | chr8.4:6624200-6624219 | MS.gene068860:intron | 45.0% | |
! | ATTGGGAGCATGTTGCTGAT+TGG | + | chr8.4:6626338-6626357 | None:intergenic | 45.0% |
! | GGGGGCAACTACAATTTTAC+GGG | + | chr8.4:6624916-6624935 | None:intergenic | 45.0% |
! | GTGAATTTTGTGGTGGTTGG+TGG | + | chr8.4:6625641-6625660 | None:intergenic | 45.0% |
! | TGGCTTGGACTAACACTTCA+AGG | - | chr8.4:6624546-6624565 | MS.gene068860:intron | 45.0% |
! | TTGGGAGCATGTTGCTGATT+GGG | + | chr8.4:6626337-6626356 | None:intergenic | 45.0% |
!!! | TTTTGGCTCTTCCCACAAAC+AGG | - | chr8.4:6626545-6626564 | MS.gene068860:intron | 45.0% |
ACCAGAGGGGGTAACTAGTT+TGG | + | chr8.4:6625073-6625092 | None:intergenic | 50.0% | |
AGAGGATTCACCGCCTTGAT+TGG | + | chr8.4:6623783-6623802 | None:intergenic | 50.0% | |
ATGCCTTCTCAGGCCAATCA+AGG | - | chr8.4:6623767-6623786 | MS.gene068860:CDS | 50.0% | |
ATGTTTCAGGGCAATGGAGG+GGG | - | chr8.4:6627197-6627216 | MS.gene068860:CDS | 50.0% | |
ATTTGACAGGGAATCGGCAC+CGG | + | chr8.4:6625781-6625800 | None:intergenic | 50.0% | |
CCCTACCAACAAGAGTAACC+TGG | + | chr8.4:6624145-6624164 | None:intergenic | 50.0% | |
CGCAGTACTTTGCTTAGTGC+TGG | + | chr8.4:6625986-6626005 | None:intergenic | 50.0% | |
CTGATGTTTCAGGGCAATGG+AGG | - | chr8.4:6627194-6627213 | MS.gene068860:CDS | 50.0% | |
GATGTTTCAGGGCAATGGAG+GGG | - | chr8.4:6627196-6627215 | MS.gene068860:CDS | 50.0% | |
TACTGTCTAGGTCAAGTCCC+AGG | + | chr8.4:6626706-6626725 | None:intergenic | 50.0% | |
TCACGAACCTGCTGATGCAA+TGG | - | chr8.4:6624352-6624371 | MS.gene068860:intron | 50.0% | |
TTGCAAAGTCTGACAGGCCA+AGG | + | chr8.4:6625876-6625895 | None:intergenic | 50.0% | |
! | AGGGGGTAACTAGTTTGGGA+GGG | + | chr8.4:6625068-6625087 | None:intergenic | 50.0% |
! | CCAGAGGGGGTAACTAGTTT+GGG | + | chr8.4:6625072-6625091 | None:intergenic | 50.0% |
! | TGGGAGCATGTTGCTGATTG+GGG | + | chr8.4:6626336-6626355 | None:intergenic | 50.0% |
!! | GCACTAAGCAAAGTACTGCG+AGG | - | chr8.4:6625986-6626005 | MS.gene068860:intron | 50.0% |
AACCTTGGAGGGAGTGAGAG+AGG | + | chr8.4:6623801-6623820 | None:intergenic | 55.0% | |
ACCTGCTGATGCAATGGCAG+TGG | - | chr8.4:6624358-6624377 | MS.gene068860:intron | 55.0% | |
ATCCTCTCTCACTCCCTCCA+AGG | - | chr8.4:6623796-6623815 | MS.gene068860:intron | 55.0% | |
CCCAAACTAGTTACCCCCTC+TGG | - | chr8.4:6625069-6625088 | MS.gene068860:intron | 55.0% | |
CCTTCTCAGGCCAATCAAGG+CGG | - | chr8.4:6623770-6623789 | MS.gene068860:CDS | 55.0% | |
GCTGCACCCACCTAAAGACA+TGG | - | chr8.4:6626093-6626112 | MS.gene068860:intron | 55.0% | |
TCCACTGCCATTGCATCAGC+AGG | + | chr8.4:6624362-6624381 | None:intergenic | 55.0% | |
! | AACTAGTTTGGGAGGGGGGA+GGG | + | chr8.4:6625061-6625080 | None:intergenic | 55.0% |
! | CTGATTGGGGATGCTAGCCT+GGG | + | chr8.4:6626323-6626342 | None:intergenic | 55.0% |
! | GAGGGGGTAACTAGTTTGGG+AGG | + | chr8.4:6625069-6625088 | None:intergenic | 55.0% |
! | GGGGGTAACTAGTTTGGGAG+GGG | + | chr8.4:6625067-6625086 | None:intergenic | 55.0% |
! | GGGGTAACTAGTTTGGGAGG+GGG | + | chr8.4:6625066-6625085 | None:intergenic | 55.0% |
! | GGGTAACTAGTTTGGGAGGG+GGG | + | chr8.4:6625065-6625084 | None:intergenic | 55.0% |
! | TAACTAGTTTGGGAGGGGGG+AGG | + | chr8.4:6625062-6625081 | None:intergenic | 55.0% |
CGGCGGTTTCATGCCTTCTC+AGG | - | chr8.4:6623757-6623776 | MS.gene068860:CDS | 60.0% | |
GCTGATTGGGGATGCTAGCC+TGG | + | chr8.4:6626324-6626343 | None:intergenic | 60.0% | |
! | ACTAGTTTGGGAGGGGGGAG+GGG | + | chr8.4:6625060-6625079 | None:intergenic | 60.0% |
! | AGAAGGCATGAAACCGCCGC+CGG | + | chr8.4:6623756-6623775 | None:intergenic | 60.0% |
! | GACGGTAACGCCGCTTTCTC+CGG | - | chr8.4:6623734-6623753 | MS.gene068860:CDS | 60.0% |
!! | CCGCCTTGATTGGCCTGAGA+AGG | + | chr8.4:6623773-6623792 | None:intergenic | 60.0% |
GAAACCGCCGCCGGAGAAAG+CGG | + | chr8.4:6623747-6623766 | None:intergenic | 65.0% | |
! | GGTAACGCCGCTTTCTCCGG+CGG | - | chr8.4:6623737-6623756 | MS.gene068860:CDS | 65.0% |
GGGGGGAGGGGTAGCTCACT+TGG | + | chr8.4:6625048-6625067 | None:intergenic | 70.0% | |
! | AACGCCGCTTTCTCCGGCGG+CGG | - | chr8.4:6623740-6623759 | MS.gene068860:CDS | 70.0% |
!! | CAGGGAATCGGCACCGGCTG+AGG | + | chr8.4:6625775-6625794 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 6623722 | 6627273 | 6623722 | ID=MS.gene068860 |
chr8.4 | mRNA | 6623722 | 6627273 | 6623722 | ID=MS.gene068860.t1;Parent=MS.gene068860 |
chr8.4 | exon | 6627178 | 6627273 | 6627178 | ID=MS.gene068860.t1.exon1;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6627178 | 6627273 | 6627178 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6626924 | 6627034 | 6626924 | ID=MS.gene068860.t1.exon2;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6626924 | 6627034 | 6626924 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6626752 | 6626849 | 6626752 | ID=MS.gene068860.t1.exon3;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6626752 | 6626849 | 6626752 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6626605 | 6626646 | 6626605 | ID=MS.gene068860.t1.exon4;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6626605 | 6626646 | 6626605 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6625761 | 6625838 | 6625761 | ID=MS.gene068860.t1.exon5;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6625761 | 6625838 | 6625761 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6625515 | 6625593 | 6625515 | ID=MS.gene068860.t1.exon6;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6625515 | 6625593 | 6625515 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6624581 | 6624679 | 6624581 | ID=MS.gene068860.t1.exon7;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6624581 | 6624679 | 6624581 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6624416 | 6624505 | 6624416 | ID=MS.gene068860.t1.exon8;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6624416 | 6624505 | 6624416 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
chr8.4 | exon | 6623722 | 6623789 | 6623722 | ID=MS.gene068860.t1.exon9;Parent=MS.gene068860.t1 |
chr8.4 | CDS | 6623722 | 6623789 | 6623722 | ID=cds.MS.gene068860.t1;Parent=MS.gene068860.t1 |
Gene Sequence |
Protein sequence |