Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055617.t1 | XP_013467691.1 | 97.1 | 204 | 3 | 3 | 1 | 201 | 1 | 204 | 2.30E-101 | 378.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055617.t1 | P46665 | 41.8 | 251 | 85 | 6 | 1 | 201 | 1 | 240 | 3.4e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055617.t1 | A0A072VJV2 | 97.1 | 204 | 3 | 3 | 1 | 201 | 1 | 204 | 1.7e-101 | 378.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene055617.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055616 | MS.gene055617 | 0.847283 | 1.28E-59 | -1.69E-46 |
| MS.gene055617 | MS.gene055618 | 0.980991 | 1.63E-151 | -1.69E-46 |
| MS.gene055617 | MS.gene063063 | 0.809888 | 1.51E-50 | -1.69E-46 |
| MS.gene055617 | MS.gene063235 | 0.805168 | 1.52E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene068860 | 0.802208 | 6.26E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene069120 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene09072 | 0.803159 | 3.98E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene39911 | 0.813504 | 2.48E-51 | -1.69E-46 |
| MS.gene055617 | MS.gene44439 | -0.808278 | 3.35E-50 | -1.69E-46 |
| MS.gene055617 | MS.gene49349 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene055617 | MS.gene50576 | 0.806258 | 8.98E-50 | -1.69E-46 |
| MS.gene055617 | MS.gene60176 | -0.802301 | 5.99E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene60177 | -0.80548 | 1.31E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene61144 | -0.805918 | 1.06E-49 | -1.69E-46 |
| MS.gene055617 | MS.gene70143 | -0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene055617 | MS.gene91215 | 0.810046 | 1.40E-50 | -1.69E-46 |
| MS.gene055617 | MS.gene96426 | -0.809827 | 1.56E-50 | -1.69E-46 |
| MS.gene055617 | MS.gene97258 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene055617 | MS.gene97259 | 0.813849 | 2.08E-51 | -1.69E-46 |
| MS.gene055617 | MS.gene99003 | 0.81353 | 2.44E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055617.t1 | MTR_1g054285 | 97.059 | 204 | 3 | 3 | 1 | 201 | 1 | 204 | 3.78e-141 | 395 |
| MS.gene055617.t1 | MTR_7g093430 | 60.377 | 212 | 71 | 8 | 1 | 201 | 1 | 210 | 8.57e-69 | 212 |
| MS.gene055617.t1 | MTR_2g061030 | 42.366 | 262 | 78 | 10 | 1 | 201 | 1 | 250 | 1.08e-33 | 123 |
| MS.gene055617.t1 | MTR_4g100550 | 53.659 | 123 | 46 | 2 | 81 | 201 | 57 | 170 | 4.45e-33 | 120 |
| MS.gene055617.t1 | MTR_5g013010 | 53.488 | 129 | 39 | 4 | 81 | 201 | 71 | 186 | 1.63e-32 | 116 |
| MS.gene055617.t1 | MTR_5g013010 | 53.488 | 129 | 39 | 4 | 81 | 201 | 71 | 186 | 1.03e-31 | 117 |
| MS.gene055617.t1 | MTR_4g097600 | 80.000 | 65 | 11 | 1 | 139 | 201 | 113 | 177 | 2.94e-28 | 107 |
| MS.gene055617.t1 | MTR_8g006705 | 54.054 | 111 | 45 | 1 | 97 | 201 | 86 | 196 | 2.18e-25 | 100 |
| MS.gene055617.t1 | MTR_5g014890 | 75.410 | 61 | 14 | 1 | 142 | 201 | 113 | 173 | 2.02e-23 | 94.4 |
| MS.gene055617.t1 | MTR_1g017090 | 44.444 | 135 | 55 | 5 | 79 | 201 | 54 | 180 | 5.24e-21 | 88.2 |
| MS.gene055617.t1 | MTR_3g103590 | 68.333 | 60 | 19 | 0 | 142 | 201 | 136 | 195 | 8.54e-21 | 88.2 |
| MS.gene055617.t1 | MTR_4g084750 | 73.684 | 57 | 14 | 1 | 146 | 201 | 59 | 115 | 1.17e-19 | 82.8 |
| MS.gene055617.t1 | MTR_4g126900 | 69.388 | 49 | 15 | 0 | 153 | 201 | 90 | 138 | 1.02e-16 | 75.5 |
| MS.gene055617.t1 | MTR_2g038625 | 57.353 | 68 | 28 | 1 | 134 | 201 | 66 | 132 | 3.95e-16 | 73.9 |
| MS.gene055617.t1 | MTR_2g038580 | 57.353 | 68 | 28 | 1 | 134 | 201 | 66 | 132 | 3.95e-16 | 73.9 |
| MS.gene055617.t1 | MTR_4g107650 | 50.602 | 83 | 37 | 2 | 119 | 201 | 67 | 145 | 3.19e-14 | 70.1 |
| MS.gene055617.t1 | MTR_7g010020 | 42.391 | 92 | 52 | 1 | 110 | 201 | 40 | 130 | 6.48e-14 | 68.9 |
| MS.gene055617.t1 | MTR_5g038280 | 48.611 | 72 | 34 | 1 | 130 | 201 | 69 | 137 | 2.83e-12 | 64.7 |
| MS.gene055617.t1 | MTR_8g089895 | 43.617 | 94 | 49 | 2 | 108 | 201 | 15 | 104 | 3.76e-12 | 64.3 |
| MS.gene055617.t1 | MTR_1g061660 | 50.909 | 55 | 27 | 0 | 147 | 201 | 55 | 109 | 6.07e-12 | 62.8 |
| MS.gene055617.t1 | MTR_6g007647 | 58.824 | 51 | 21 | 0 | 151 | 201 | 33 | 83 | 6.26e-12 | 63.2 |
| MS.gene055617.t1 | MTR_6g007647 | 58.824 | 51 | 21 | 0 | 151 | 201 | 67 | 117 | 8.15e-12 | 63.2 |
| MS.gene055617.t1 | MTR_3g086790 | 40.196 | 102 | 59 | 2 | 101 | 201 | 10 | 110 | 9.75e-12 | 62.8 |
| MS.gene055617.t1 | MTR_8g469430 | 54.902 | 51 | 23 | 0 | 151 | 201 | 89 | 139 | 4.18e-11 | 61.2 |
| MS.gene055617.t1 | MTR_5g039000 | 50.847 | 59 | 29 | 0 | 143 | 201 | 69 | 127 | 4.35e-11 | 60.8 |
| MS.gene055617.t1 | MTR_7g103340 | 48.276 | 58 | 30 | 0 | 144 | 201 | 56 | 113 | 5.20e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055617.t1 | AT5G06710 | 41.406 | 256 | 79 | 7 | 1 | 201 | 1 | 240 | 7.50e-40 | 137 |
| MS.gene055617.t1 | AT5G06710 | 41.406 | 256 | 79 | 7 | 1 | 201 | 1 | 240 | 2.98e-39 | 137 |
| MS.gene055617.t1 | AT5G47370 | 48.795 | 166 | 66 | 8 | 48 | 201 | 22 | 180 | 1.76e-34 | 124 |
| MS.gene055617.t1 | AT4G17460 | 44.262 | 183 | 55 | 8 | 48 | 201 | 21 | 185 | 4.64e-30 | 112 |
| MS.gene055617.t1 | AT3G60390 | 51.429 | 140 | 46 | 6 | 81 | 201 | 76 | 212 | 5.64e-30 | 112 |
| MS.gene055617.t1 | AT4G16780 | 55.645 | 124 | 40 | 3 | 81 | 201 | 68 | 179 | 6.88e-28 | 106 |
| MS.gene055617.t1 | AT2G44910 | 48.905 | 137 | 47 | 4 | 81 | 201 | 84 | 213 | 9.67e-27 | 104 |
| MS.gene055617.t1 | AT2G22800 | 76.667 | 60 | 14 | 0 | 142 | 201 | 104 | 163 | 8.97e-25 | 98.2 |
| MS.gene055617.t1 | AT4G37790 | 76.667 | 60 | 14 | 0 | 142 | 201 | 117 | 176 | 2.55e-24 | 97.1 |
| MS.gene055617.t1 | AT5G06710 | 35.652 | 230 | 77 | 7 | 1 | 175 | 1 | 214 | 2.29e-20 | 85.9 |
| MS.gene055617.t1 | AT5G06710 | 35.652 | 230 | 77 | 7 | 1 | 175 | 1 | 214 | 2.29e-20 | 85.9 |
| MS.gene055617.t1 | AT2G01430 | 60.294 | 68 | 27 | 0 | 134 | 201 | 122 | 189 | 2.87e-20 | 85.1 |
| MS.gene055617.t1 | AT2G01430 | 60.294 | 68 | 27 | 0 | 134 | 201 | 122 | 189 | 9.28e-20 | 84.7 |
| MS.gene055617.t1 | AT1G70920 | 65.079 | 63 | 20 | 1 | 141 | 201 | 27 | 89 | 4.51e-17 | 75.5 |
| MS.gene055617.t1 | AT1G70920 | 65.079 | 63 | 20 | 1 | 141 | 201 | 57 | 119 | 7.70e-17 | 75.9 |
| MS.gene055617.t1 | AT2G36610 | 45.312 | 64 | 27 | 1 | 146 | 201 | 66 | 129 | 5.23e-11 | 59.7 |
| MS.gene055617.t1 | AT3G01470 | 56.863 | 51 | 22 | 0 | 151 | 201 | 68 | 118 | 6.77e-11 | 60.5 |
Find 50 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAAGAGATAGGTAATTT+TGG | 0.264059 | 1.3:-39109282 | None:intergenic |
| AGGAATAACAATGCTGAATA+TGG | 0.265099 | 1.3:+39109989 | MS.gene055617:CDS |
| GGAAGTGATGATGATGAAAA+TGG | 0.308043 | 1.3:+39110052 | MS.gene055617:CDS |
| CTTCTCACCTCCCCATTCCT+TGG | 0.329294 | 1.3:+39109448 | MS.gene055617:CDS |
| ATGGAACTTGCTTTGAGCTT+AGG | 0.368374 | 1.3:+39109252 | MS.gene055617:CDS |
| CTTGGTAGTGGATCTTTGTT+GGG | 0.374601 | 1.3:-39109312 | None:intergenic |
| GGAAGAAGGTCTAGTTGAAT+AGG | 0.392211 | 1.3:-39109393 | None:intergenic |
| GTCCTCGTCAAGTTGAAGTT+TGG | 0.396562 | 1.3:+39110292 | MS.gene055617:CDS |
| ACTTGGTAGTGGATCTTTGT+TGG | 0.408944 | 1.3:-39109313 | None:intergenic |
| GGTTGGGTGAGCCAAGGAAT+GGG | 0.421883 | 1.3:-39109459 | None:intergenic |
| CTTCGGTCGTCGCCGGAAAA+CGG | 0.438226 | 1.3:-39109895 | None:intergenic |
| TAGATAGAAAATTACATGGT+TGG | 0.446528 | 1.3:-39109476 | None:intergenic |
| TTGCAATGGATTTCAGTATG+AGG | 0.457926 | 1.3:+39109969 | MS.gene055617:CDS |
| AGATAGAAAATTACATGGTT+GGG | 0.461778 | 1.3:-39109475 | None:intergenic |
| TTCTGTGTCACCATTTGCAA+TGG | 0.477662 | 1.3:+39109955 | MS.gene055617:CDS |
| GGGTGAGGAGATCTAAGAAC+AGG | 0.479275 | 1.3:-39109423 | None:intergenic |
| GGAATGGGGAGGTGAGAAGA+AGG | 0.480630 | 1.3:-39109444 | None:intergenic |
| ATACTGAAATCCATTGCAAA+TGG | 0.496930 | 1.3:-39109965 | None:intergenic |
| GATCTAAGAACAGGAGAGAA+AGG | 0.503681 | 1.3:-39109414 | None:intergenic |
| TGGTTGGGTGAGCCAAGGAA+TGG | 0.507151 | 1.3:-39109460 | None:intergenic |
| TCGACGTCTTCGGTCGTCGC+CGG | 0.507773 | 1.3:-39109902 | None:intergenic |
| GGTACCGTCGTCGACGTCTT+CGG | 0.509499 | 1.3:-39109912 | None:intergenic |
| AGAAACAAGAGAGAAAATGA+AGG | 0.510237 | 1.3:+39110016 | MS.gene055617:CDS |
| ATCATCAGGTGGACCGGTGA+GGG | 0.515305 | 1.3:+39109859 | MS.gene055617:intron |
| GGTTTGTCAAGAAAAGAGAT+AGG | 0.515910 | 1.3:-39109291 | None:intergenic |
| AATGAAGGTGAAGCTGAAAG+AGG | 0.521199 | 1.3:+39110031 | MS.gene055617:CDS |
| TTTGTTATCATCAGGTGGAC+CGG | 0.521239 | 1.3:+39109853 | MS.gene055617:intron |
| GAATGGGGAGGTGAGAAGAA+GGG | 0.522886 | 1.3:-39109443 | None:intergenic |
| GAAGTGATGATGATGAAAAT+GGG | 0.525282 | 1.3:+39110053 | MS.gene055617:CDS |
| GGGAGGTGAGAAGAAGGGTG+AGG | 0.527359 | 1.3:-39109438 | None:intergenic |
| AAATGGTGACACAGAACTGC+TGG | 0.531470 | 1.3:-39109948 | None:intergenic |
| TGTTGGGTTGAGAAGAAACT+TGG | 0.533644 | 1.3:-39109330 | None:intergenic |
| ATGATGAAAATGGGTCAACT+AGG | 0.551419 | 1.3:+39110062 | MS.gene055617:CDS |
| GAACAGGAGAGAAAGGAAGA+AGG | 0.553836 | 1.3:-39109407 | None:intergenic |
| GTTGAGAAGAAACTTGGTAG+TGG | 0.575951 | 1.3:-39109324 | None:intergenic |
| GAAATTTACAGGATTAAGAG+TGG | 0.579010 | 1.3:-39110146 | None:intergenic |
| AGAAGGTCTAGTTGAATAGG+TGG | 0.598462 | 1.3:-39109390 | None:intergenic |
| GGTTTCAAAATAGAAGAGCA+AGG | 0.607323 | 1.3:+39110313 | MS.gene055617:CDS |
| AATGGTGACACAGAACTGCT+GGG | 0.607777 | 1.3:-39109947 | None:intergenic |
| AGTTTCTTCTCAACCCAACA+AGG | 0.609680 | 1.3:+39109333 | MS.gene055617:CDS |
| TTACATGGTTGGGTGAGCCA+AGG | 0.611815 | 1.3:-39109465 | None:intergenic |
| TTCACGTCTAGCTCCCTCAC+CGG | 0.612339 | 1.3:-39109872 | None:intergenic |
| AATAACAATGCTGAATATGG+AGG | 0.617867 | 1.3:+39109992 | MS.gene055617:CDS |
| AACCAAACTTCAACTTGACG+AGG | 0.618703 | 1.3:-39110294 | None:intergenic |
| GTTGGGTGAGCCAAGGAATG+GGG | 0.619312 | 1.3:-39109458 | None:intergenic |
| TATCATCAGGTGGACCGGTG+AGG | 0.627118 | 1.3:+39109858 | MS.gene055617:intron |
| ATGGTGACACAGAACTGCTG+GGG | 0.640069 | 1.3:-39109946 | None:intergenic |
| ACGACCGAAGACGTCGACGA+CGG | 0.675975 | 1.3:+39109908 | MS.gene055617:CDS |
| GGGTGAGCCAAGGAATGGGG+AGG | 0.690782 | 1.3:-39109455 | None:intergenic |
| TGGTGACACAGAACTGCTGG+GGG | 0.743324 | 1.3:-39109945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATAAGAAATTTAC+AGG | - | chr1.3:39110160-39110179 | None:intergenic | 10.0% |
| !! | AAATATATAAAACCATTTAG+AGG | - | chr1.3:39109520-39109539 | None:intergenic | 15.0% |
| !!! | TGAAATGTCAATTTTTTTAA+CGG | + | chr1.3:39109718-39109737 | MS.gene055617:intron | 15.0% |
| !!! | TTGTTTCTTCTTTTTAATTA+AGG | + | chr1.3:39110192-39110211 | MS.gene055617:intron | 15.0% |
| !! | ATAGTAGATAGAAAATTACA+TGG | - | chr1.3:39109483-39109502 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTGTTATCATC+AGG | + | chr1.3:39109845-39109864 | MS.gene055617:intron | 20.0% |
| ! | AGATAGAAAATTACATGGTT+GGG | - | chr1.3:39109478-39109497 | None:intergenic | 25.0% |
| ! | TAGATAGAAAATTACATGGT+TGG | - | chr1.3:39109479-39109498 | None:intergenic | 25.0% |
| !! | AGAAAAGAGATAGGTAATTT+TGG | - | chr1.3:39109285-39109304 | None:intergenic | 25.0% |
| !! | ATCATTTTCTTTCCTCTAAA+TGG | + | chr1.3:39109505-39109524 | MS.gene055617:intron | 25.0% |
| !! | TTAAAGTGCTTGAAAATTGT+GGG | + | chr1.3:39109621-39109640 | MS.gene055617:intron | 25.0% |
| !! | TTTAAAGTGCTTGAAAATTG+TGG | + | chr1.3:39109620-39109639 | MS.gene055617:intron | 25.0% |
| !!! | TCAATTTTTTTAACGGATCT+AGG | + | chr1.3:39109725-39109744 | MS.gene055617:intron | 25.0% |
| AAAACCTTGAACCAAATCTT+GGG | - | chr1.3:39109659-39109678 | None:intergenic | 30.0% | |
| AAAGCTTCAGAAGAAAAAAG+AGG | + | chr1.3:39109357-39109376 | MS.gene055617:CDS | 30.0% | |
| AATAACAATGCTGAATATGG+AGG | + | chr1.3:39109992-39110011 | MS.gene055617:CDS | 30.0% | |
| AGAAACAAGAGAGAAAATGA+AGG | + | chr1.3:39110016-39110035 | MS.gene055617:CDS | 30.0% | |
| AGGAATAACAATGCTGAATA+TGG | + | chr1.3:39109989-39110008 | MS.gene055617:CDS | 30.0% | |
| ATACTGAAATCCATTGCAAA+TGG | - | chr1.3:39109968-39109987 | None:intergenic | 30.0% | |
| GAAATTTACAGGATTAAGAG+TGG | - | chr1.3:39110149-39110168 | None:intergenic | 30.0% | |
| ! | GAAGTGATGATGATGAAAAT+GGG | + | chr1.3:39110053-39110072 | MS.gene055617:CDS | 30.0% |
| !!! | TTGTTTTTGTTATCATCAGG+TGG | + | chr1.3:39109848-39109867 | MS.gene055617:intron | 30.0% |
| ATGATGAAAATGGGTCAACT+AGG | + | chr1.3:39110062-39110081 | MS.gene055617:CDS | 35.0% | |
| CAAAACCTTGAACCAAATCT+TGG | - | chr1.3:39109660-39109679 | None:intergenic | 35.0% | |
| GGTTTGTCAAGAAAAGAGAT+AGG | - | chr1.3:39109294-39109313 | None:intergenic | 35.0% | |
| TTGAATTTGCACCCAAGATT+TGG | + | chr1.3:39109645-39109664 | MS.gene055617:intron | 35.0% | |
| ! | GGAAGTGATGATGATGAAAA+TGG | + | chr1.3:39110052-39110071 | MS.gene055617:CDS | 35.0% |
| ! | TTGCAATGGATTTCAGTATG+AGG | + | chr1.3:39109969-39109988 | MS.gene055617:CDS | 35.0% |
| !!! | TTCTGAAGCTTTTCCTTGTT+GGG | - | chr1.3:39109349-39109368 | None:intergenic | 35.0% |
| AACCAAACTTCAACTTGACG+AGG | - | chr1.3:39110297-39110316 | None:intergenic | 40.0% | |
| AATGAAGGTGAAGCTGAAAG+AGG | + | chr1.3:39110031-39110050 | MS.gene055617:CDS | 40.0% | |
| AGAAGGTCTAGTTGAATAGG+TGG | - | chr1.3:39109393-39109412 | None:intergenic | 40.0% | |
| AGTTTCTTCTCAACCCAACA+AGG | + | chr1.3:39109333-39109352 | MS.gene055617:CDS | 40.0% | |
| GATCTAAGAACAGGAGAGAA+AGG | - | chr1.3:39109417-39109436 | None:intergenic | 40.0% | |
| GGAAGAAGGTCTAGTTGAAT+AGG | - | chr1.3:39109396-39109415 | None:intergenic | 40.0% | |
| GTAGAAGCAAAAACTTGCAC+TGG | + | chr1.3:39110251-39110270 | MS.gene055617:intron | 40.0% | |
| GTTGAGAAGAAACTTGGTAG+TGG | - | chr1.3:39109327-39109346 | None:intergenic | 40.0% | |
| TTCTGTGTCACCATTTGCAA+TGG | + | chr1.3:39109955-39109974 | MS.gene055617:CDS | 40.0% | |
| ! | ATGGAACTTGCTTTGAGCTT+AGG | + | chr1.3:39109252-39109271 | MS.gene055617:CDS | 40.0% |
| ! | TTTGTTATCATCAGGTGGAC+CGG | + | chr1.3:39109853-39109872 | MS.gene055617:intron | 40.0% |
| !! | ACTTGGTAGTGGATCTTTGT+TGG | - | chr1.3:39109316-39109335 | None:intergenic | 40.0% |
| !! | CTTGGTAGTGGATCTTTGTT+GGG | - | chr1.3:39109315-39109334 | None:intergenic | 40.0% |
| !! | TGTTGGGTTGAGAAGAAACT+TGG | - | chr1.3:39109333-39109352 | None:intergenic | 40.0% |
| !!! | CTTCTGAAGCTTTTCCTTGT+TGG | - | chr1.3:39109350-39109369 | None:intergenic | 40.0% |
| AAATGGTGACACAGAACTGC+TGG | - | chr1.3:39109951-39109970 | None:intergenic | 45.0% | |
| AATGGTGACACAGAACTGCT+GGG | - | chr1.3:39109950-39109969 | None:intergenic | 45.0% | |
| GAACAGGAGAGAAAGGAAGA+AGG | - | chr1.3:39109410-39109429 | None:intergenic | 45.0% | |
| ! | TGCACCCAAGATTTGGTTCA+AGG | + | chr1.3:39109652-39109671 | MS.gene055617:intron | 45.0% |
| !! | GTCCTCGTCAAGTTGAAGTT+TGG | + | chr1.3:39110292-39110311 | MS.gene055617:CDS | 45.0% |
| ATGGTGACACAGAACTGCTG+GGG | - | chr1.3:39109949-39109968 | None:intergenic | 50.0% | |
| GAATGGGGAGGTGAGAAGAA+GGG | - | chr1.3:39109446-39109465 | None:intergenic | 50.0% | |
| GGGTGAGGAGATCTAAGAAC+AGG | - | chr1.3:39109426-39109445 | None:intergenic | 50.0% | |
| TTACATGGTTGGGTGAGCCA+AGG | - | chr1.3:39109468-39109487 | None:intergenic | 50.0% | |
| ! | GCTAGACGTGAACCGTTTTC+CGG | + | chr1.3:39109883-39109902 | MS.gene055617:CDS | 50.0% |
| ACTGCTGGGGGATGACAATG+AGG | - | chr1.3:39109936-39109955 | None:intergenic | 55.0% | |
| ATCATCAGGTGGACCGGTGA+GGG | + | chr1.3:39109859-39109878 | MS.gene055617:intron | 55.0% | |
| CTTCTCACCTCCCCATTCCT+TGG | + | chr1.3:39109448-39109467 | MS.gene055617:CDS | 55.0% | |
| GGAATGGGGAGGTGAGAAGA+AGG | - | chr1.3:39109447-39109466 | None:intergenic | 55.0% | |
| GGTTGGGTGAGCCAAGGAAT+GGG | - | chr1.3:39109462-39109481 | None:intergenic | 55.0% | |
| GTTGGGTGAGCCAAGGAATG+GGG | - | chr1.3:39109461-39109480 | None:intergenic | 55.0% | |
| TATCATCAGGTGGACCGGTG+AGG | + | chr1.3:39109858-39109877 | MS.gene055617:intron | 55.0% | |
| TGGTGACACAGAACTGCTGG+GGG | - | chr1.3:39109948-39109967 | None:intergenic | 55.0% | |
| TGGTTGGGTGAGCCAAGGAA+TGG | - | chr1.3:39109463-39109482 | None:intergenic | 55.0% | |
| ! | TTCACGTCTAGCTCCCTCAC+CGG | - | chr1.3:39109875-39109894 | None:intergenic | 55.0% |
| ACGACCGAAGACGTCGACGA+CGG | + | chr1.3:39109908-39109927 | MS.gene055617:CDS | 60.0% | |
| CTTCGGTCGTCGCCGGAAAA+CGG | - | chr1.3:39109898-39109917 | None:intergenic | 60.0% | |
| GGGAGGTGAGAAGAAGGGTG+AGG | - | chr1.3:39109441-39109460 | None:intergenic | 60.0% | |
| GGTACCGTCGTCGACGTCTT+CGG | - | chr1.3:39109915-39109934 | None:intergenic | 60.0% | |
| GGGTGAGCCAAGGAATGGGG+AGG | - | chr1.3:39109458-39109477 | None:intergenic | 65.0% | |
| TCGACGTCTTCGGTCGTCGC+CGG | - | chr1.3:39109905-39109924 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 39109252 | 39110334 | 39109252 | ID=MS.gene055617 |
| chr1.3 | mRNA | 39109252 | 39110334 | 39109252 | ID=MS.gene055617.t1;Parent=MS.gene055617 |
| chr1.3 | exon | 39109252 | 39109483 | 39109252 | ID=MS.gene055617.t1.exon1;Parent=MS.gene055617.t1 |
| chr1.3 | CDS | 39109252 | 39109483 | 39109252 | ID=cds.MS.gene055617.t1;Parent=MS.gene055617.t1 |
| chr1.3 | exon | 39109867 | 39110159 | 39109867 | ID=MS.gene055617.t1.exon2;Parent=MS.gene055617.t1 |
| chr1.3 | CDS | 39109867 | 39110159 | 39109867 | ID=cds.MS.gene055617.t1;Parent=MS.gene055617.t1 |
| chr1.3 | exon | 39110255 | 39110334 | 39110255 | ID=MS.gene055617.t1.exon3;Parent=MS.gene055617.t1 |
| chr1.3 | CDS | 39110255 | 39110334 | 39110255 | ID=cds.MS.gene055617.t1;Parent=MS.gene055617.t1 |
| Gene Sequence |
| Protein sequence |
