AlfalfaGEDB | MS.gene054593

M. sativa cultivar XinJiangDaYe / MS.gene054593

KEGG: K07760
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054593.t1	CAA65980.1	96.6	235	1	1	1	228	1	235	1.40E-124	455.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054593.t1	Q8L4P8	78.3	235	36	2	1	228	1	227	1.3e-102	374.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054593.t1	P93321	96.6	235	1	1	1	228	1	235	1.0e-124	455.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene054593	0.831342	1.76E-55	-1.69E-46
MS.gene049989	MS.gene054593	0.824258	8.90E-54	-1.69E-46
MS.gene050875	MS.gene054593	0.816421	5.58E-52	-1.69E-46
MS.gene05124	MS.gene054593	0.821185	4.62E-53	-1.69E-46
MS.gene051742	MS.gene054593	0.826081	3.30E-54	-1.69E-46
MS.gene051816	MS.gene054593	0.82498	6.01E-54	-1.69E-46
MS.gene051914	MS.gene054593	0.884008	2.77E-71	-1.69E-46
MS.gene051955	MS.gene054593	0.83657	8.66E-57	-1.69E-46
MS.gene052143	MS.gene054593	0.820477	6.72E-53	-1.69E-46
MS.gene052308	MS.gene054593	0.865779	4.61E-65	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054593.t1	MTR_4g007750	95.745	235	3	1	1	228	1	235	8.83e-165	458
MS.gene054593.t1	MTR_1g075610	65.517	232	68	2	2	228	16	240	1.39e-104	306
MS.gene054593.t1	MTR_4g094430	57.265	234	82	5	1	230	1	220	9.02e-89	265
MS.gene054593.t1	MTR_2g032060	58.190	232	79	5	1	228	1	218	1.19e-87	262
MS.gene054593.t1	MTR_3g040810	43.333	240	111	7	4	228	23	252	1.16e-54	184
MS.gene054593.t1	MTR_3g040520	43.333	240	111	7	4	228	25	254	2.59e-54	182
MS.gene054593.t1	MTR_6g080470	43.421	228	113	4	2	227	12	225	3.62e-53	177
MS.gene054593.t1	MTR_4g103810	39.695	262	139	5	1	253	105	356	1.19e-51	174
MS.gene054593.t1	MTR_4g103810	39.695	262	139	5	1	253	215	466	1.16e-50	173
MS.gene054593.t1	MTR_8g080190	43.478	230	116	4	1	228	382	599	1.98e-50	175

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054593.t1	AT2G38620	78.862	246	39	4	1	238	1	241	6.23e-137	386
MS.gene054593.t1	AT2G38620	78.862	246	39	4	1	238	1	241	6.23e-137	386
MS.gene054593.t1	AT2G38620	80.508	236	37	3	1	228	1	235	8.40e-134	380
MS.gene054593.t1	AT3G54180	79.574	235	39	2	1	228	1	233	1.66e-132	377
MS.gene054593.t1	AT1G20930	65.385	234	67	3	1	228	13	238	2.83e-105	308
MS.gene054593.t1	AT1G76540	63.948	233	72	4	1	228	11	236	6.49e-101	296
MS.gene054593.t1	AT3G48750	56.277	231	85	3	1	228	1	218	3.21e-86	258
MS.gene054593.t1	AT2G38620	57.511	233	34	5	1	228	1	173	1.48e-74	227
MS.gene054593.t1	AT1G66750	44.783	230	111	5	1	228	10	225	1.42e-58	190
MS.gene054593.t1	AT1G67580	43.913	230	115	4	1	228	403	620	8.65e-55	188

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Find 38 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGAACCAGCGTATT+CGG	0.347056	4.1:+22024567	None:intergenic
AAAGCAAAAGAAATCTCCAC+AGG	0.625477	4.1:-22024858	MS.gene054593:CDS
AAAGTTGGAGAAGGAACCTA+TGG	0.491565	4.1:-22024891	MS.gene054593:CDS
AAGACAGGCTTTGTTTCCAG+GGG	0.608099	4.1:-22023484	MS.gene054593:CDS
AAGATTGCTGATTTAGGGCT+TGG	0.348584	4.1:-22024437	MS.gene054593:CDS
AAGTATTAAAAGGTTGAGTT+TGG	0.357286	4.1:+22023422	None:intergenic
ACTCTACTGGTGTTGATATT+TGG	0.259114	4.1:-22024322	MS.gene054593:CDS
ACTTCGCGAAGTGCTGTTGG+AGG	0.581243	4.1:+22024783	None:intergenic
AGAAGACAGGCTTTGTTTCC+AGG	0.327546	4.1:-22023486	MS.gene054593:CDS
AGATTGCTGATTTAGGGCTT+GGG	0.479441	4.1:-22024436	MS.gene054593:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTATAAAATGTTGTCGGAT+AGG	-	chr4.1:22024152-22024171	MS.gene054593:intron	30.0%
ATACGCTATTGTGTGAAAAA+TGG	-	chr4.1:22024259-22024278	MS.gene054593:intron	30.0%
ATCACCAACATAAAATGAAC+CGG	+	chr4.1:22024537-22024556	None:intergenic	30.0%
GTATAAAATGTTGTCGGATA+GGG	-	chr4.1:22024153-22024172	MS.gene054593:intron	30.0%
TACGAAAAACTCGAAAAAGT+TGG	-	chr4.1:22023208-22023227	MS.gene054593:CDS	30.0%
TATAAAATGTTGTCGGATAG+GGG	-	chr4.1:22024154-22024173	MS.gene054593:intron	30.0%
TTGCTAATCCATTGTAGTTA+GGG	-	chr4.1:22024187-22024206	MS.gene054593:intron	30.0%
TTTGCTAATTCACTGTGATT+AGG	-	chr4.1:22024045-22024064	MS.gene054593:intron	30.0%
AAACTCGAAAAAGTTGGAGA+AGG	-	chr4.1:22023214-22023233	MS.gene054593:CDS	35.0%
AAAGCAAAAGAAATCTCCAC+AGG	-	chr4.1:22023256-22023275	MS.gene054593:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	22023199	22024937	22023199	ID=MS.gene054593
chr4.1	mRNA	22023199	22024937	22023199	ID=MS.gene054593.t1;Parent=MS.gene054593
chr4.1	exon	22024578	22024937	22024578	ID=MS.gene054593.t1.exon1;Parent=MS.gene054593.t1
chr4.1	CDS	22024578	22024937	22024578	ID=cds.MS.gene054593.t1;Parent=MS.gene054593.t1
chr4.1	exon	22024303	22024555	22024303	ID=MS.gene054593.t1.exon2;Parent=MS.gene054593.t1
chr4.1	CDS	22024303	22024555	22024303	ID=cds.MS.gene054593.t1;Parent=MS.gene054593.t1
chr4.1	exon	22023410	22023519	22023410	ID=MS.gene054593.t1.exon3;Parent=MS.gene054593.t1
chr4.1	CDS	22023410	22023519	22023410	ID=cds.MS.gene054593.t1;Parent=MS.gene054593.t1
chr4.1	exon	22023199	22023248	22023199	ID=MS.gene054593.t1.exon4;Parent=MS.gene054593.t1
chr4.1	CDS	22023199	22023248	22023199	ID=cds.MS.gene054593.t1;Parent=MS.gene054593.t1

Gene Sequence

>MS.gene054593

ATGGAAAAGTACGAAAAACTCGAAAAAGTTGGAGAAGGAACCTATGGAAAAGTATACAAAGCAAAAGAAATCTCCACAGGCCAAATCGTCGCACTCAAAAAAACCCGTCTCGAAATGGACGAAGAAGGTGTTCCTCCAACAGCACTTCGCGAAGTTTCTCTTCTTCAAATGCTCTCACAATCTCTCTACATCGTTCGTCTTCTCAACGTCGAACACATCGATAAACCCCCCAAAAACGCTACCCACACCCCCTCAAAACCACTTCTCTATCTTGTATTCGAGTATCTTGACACCGATCTGAAGAAATTCATTGATACTTTTCGAAAAGGCACTAACCCTAGACCGTTACCGAATACGCTGGTTCAGAGTTTTTTTGTTTCAGTTGTGCAAAGGTGTTGCTCATTGTCATAGTCATGGTGTGTTACATCGTGATTTGAAACCGCAGAATTTGTTGCTGGATCAAGCGAAAGGGATTTTGAAGATTGCTGATTTAGGGCTTGGGAGAGCTTTTACTGTGCCGTTGAAAAGTTATACTCATGAGATTGTCACTCTTTGGTATAGAGCTCCTGAGGTTTTGCTTGGTTCTTCTACTTACTCTACTGGTGTTGATATTTGGTCTGTTGGATGTATTTTTGGTGAGTGCTTATTCTTCATTCACCGATCAATTTTAATTTTTTGTTGACGTTGTTGTTAATTCATAGTAATTAGGGTTTTTGACTTGAATACTAAAAGTTGAGTTATTTGGATCTGCTATGAGATTAATCATTGAGTCAGTATTAGATGATCTCGGTCATTAAATTGAGATCGGACGGGTTAATTCTCGTTGACCAATGTTTTTTTTTTTTTTTTGCTAATTCACTGTGATTAGGATCTTGGACCCCACTAATGTTGTTAAATAATGGTGTGTTATATTGTTATAGCATTGCAGAATTTGAATATGTGATATGGTGATTAGTATAAAATGTTGTCGGATAGGGGCGGGCTATTGTTGCTAATCCATTGTAGTTAGGGTCTTGGATCCACCATAACGCTAAAATGTAGTGGGTGCTATTGTTTCATGATACGCTATTGTGTGAAAAATGGTGTTGAATATAGGTTATGGAGGCGCACTAGTGGAATTTGAACGAACTATTTTTTCATGATCCACCATTGACAACACTTACCTCTACCGGGTATCGTAAGGCATCCGACGGGTTAGGTCATGTGGACTTGTTATGGGATTAATTTCTCGAGTCGGCTGTGCAACATCGGTTTCTTTTTTACCGAGTAGGGCTAGCTACCTCCCAAATACGTGACTCTAGGAATCAAATTAAGGGCACCTTGAGTTGGGGCAACCCGGTTCATTTTATGTTGGTGATTTTGATACTTTTCTTTCTCTATATATGATGGAATGTAATTGAATTTGTTTGTTTGTGCAGCTGAAATGGTGAGAAGACAGGCTTTGTTTCCAGGGGATTCTGAATTCCAGCAGCTTCTGAACATATTCAAGTATACCAAACTCAACCTTTTAATACTTTTTCTAATTCAAGTATATTGCTGTTTTGCTGTGATATAAGAAATGATAAAATGAGAAGTGTTAATTTACAGAAAAGTTTAAACTTTTATACTTACACACTGCTTAATAGTTTTTTGCAAGTAGAAAATTAATCACTCTTAACAGTTAAATTGAAAGTTTTCATATTGGAGTAGGCCAATTTTATAAAATTTCATATAACAGGACTGCAAGACATTGGTTTTAT

Protein sequence

>MS.gene054593.t1

MEKYEKLEKVGEGTYGKVYKAKEISTGQIVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYIVRLLNVEHIDKPPKNATHTPSKPLLYLVFEYLDTDLKKFIDTFRKGTNPRPLPNTLLCKGVAHCHSHGVLHRDLKPQNLLLDQAKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSSTYSTGVDIWSVGCIFAEMVRRQALFPGDSEFQQLLNIFKYTKLNLLILFLIQANFIKFHITGLQDIGF