Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06898.t1 | XP_013461426.2 | 97 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 9.70E-82 | 312.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06898.t1 | Q8VZV9 | 60.0 | 155 | 59 | 1 | 11 | 165 | 10 | 161 | 4.6e-48 | 192.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06898.t1 | A0A396IYW6 | 97.0 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 7.0e-82 | 312.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene06898 | 0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene06898 | 0.811787 | 5.88E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene06898 | 0.854627 | 1.09E-61 | -1.69E-46 |
| MS.gene058660 | MS.gene06898 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene06898 | 0.819729 | 9.96E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene06898 | 0.808116 | 3.63E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene06898 | 0.818814 | 1.61E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene06898 | 0.821156 | 4.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06898.t1 | MTR_3g491820 | 96.364 | 165 | 5 | 1 | 1 | 165 | 1 | 164 | 4.18e-114 | 320 |
| MS.gene06898.t1 | MTR_3g491820 | 97.710 | 131 | 3 | 0 | 35 | 165 | 1 | 131 | 1.46e-92 | 265 |
| MS.gene06898.t1 | MTR_3g491820 | 99.010 | 101 | 1 | 0 | 65 | 165 | 1 | 101 | 1.07e-69 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06898.t1 | AT5G24314 | 60.000 | 155 | 59 | 1 | 11 | 165 | 10 | 161 | 2.56e-67 | 202 |
| MS.gene06898.t1 | AT5G24314 | 57.055 | 163 | 59 | 2 | 11 | 165 | 10 | 169 | 5.93e-65 | 196 |
Find 41 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTCGAGGAGAGAGTAAA+TGG | 0.219682 | 3.2:-77202380 | None:intergenic |
| CACCACTTTCCTTTCGCATT+TGG | 0.243431 | 3.2:-77202632 | None:intergenic |
| TGATTCTCTGCCCTACAAAA+TGG | 0.340113 | 3.2:+77204141 | MS.gene06898:CDS |
| AATATGGAGGCGAAGGAAAA+TGG | 0.348814 | 3.2:+77202662 | MS.gene06898:CDS |
| GAGTCTGATCCCTTCAAACC+TGG | 0.410327 | 3.2:+77204412 | MS.gene06898:CDS |
| TGAGGGAAAACTCTTGCAAT+TGG | 0.438639 | 3.2:+77204207 | MS.gene06898:CDS |
| AAAGTGGTGGACGAAGAATA+TGG | 0.452551 | 3.2:+77202646 | MS.gene06898:CDS |
| GGAGCAGGTGAGGAAGATAA+AGG | 0.452829 | 3.2:+77204183 | MS.gene06898:CDS |
| TCAGACTCGGCATACGCCTC+TGG | 0.453063 | 3.2:-77204397 | None:intergenic |
| CTCACCTGCTCCTCGAGAAA+AGG | 0.458089 | 3.2:-77204172 | None:intergenic |
| ATAATGAGGCCCAGGTTTGA+AGG | 0.480274 | 3.2:-77204422 | None:intergenic |
| GAGAGCAACATGGATGAGTA+TGG | 0.481625 | 3.2:+77204310 | MS.gene06898:CDS |
| GGTGAGGAAGATAAAGGATG+AGG | 0.481739 | 3.2:+77204189 | MS.gene06898:CDS |
| CGCCTCTGGACGGTAAAATC+CGG | 0.489373 | 3.2:-77204383 | None:intergenic |
| ATTACTCAAAACATGAAGAA+TGG | 0.511919 | 3.2:-77204347 | None:intergenic |
| GCGAGTTAACACTCAGGCTC+GGG | 0.514482 | 3.2:-77202516 | None:intergenic |
| AAGTCGAGGAGAGAGTAAAT+GGG | 0.516542 | 3.2:-77202379 | None:intergenic |
| TGCGAGTTAACACTCAGGCT+CGG | 0.517311 | 3.2:-77202517 | None:intergenic |
| TAAAACTCTTTCAAATAATG+AGG | 0.525568 | 3.2:-77204436 | None:intergenic |
| TCTTTCAAATAATGAGGCCC+AGG | 0.542211 | 3.2:-77204430 | None:intergenic |
| AGTAATCGAGTGAATGATGC+CGG | 0.544993 | 3.2:+77204364 | MS.gene06898:CDS |
| GTGAGGAAGATAAAGGATGA+GGG | 0.559910 | 3.2:+77204190 | MS.gene06898:CDS |
| TAATGAGGCCCAGGTTTGAA+GGG | 0.566321 | 3.2:-77204421 | None:intergenic |
| CAGAAGATAGAATTAAGAGC+TGG | 0.569406 | 3.2:+77202481 | MS.gene06898:intron |
| GACGAAGAATATGGAGGCGA+AGG | 0.570823 | 3.2:+77202655 | MS.gene06898:CDS |
| AGTCTGATCCCTTCAAACCT+GGG | 0.572137 | 3.2:+77204413 | MS.gene06898:CDS |
| GAGCCTGAGTGTTAACTCGC+AGG | 0.575752 | 3.2:+77202519 | MS.gene06898:CDS |
| TCTTGCAATTGGACATAGAG+AGG | 0.595233 | 3.2:+77204218 | MS.gene06898:CDS |
| ATCCAAATGCGAAAGGAAAG+TGG | 0.601949 | 3.2:+77202630 | MS.gene06898:CDS |
| AGGTTTGAAGGGATCAGACT+CGG | 0.605147 | 3.2:-77204410 | None:intergenic |
| GTTGCTCTCAACATAAGCGT+TGG | 0.607357 | 3.2:-77204296 | None:intergenic |
| CGCTTATGTTGAGAGCAACA+TGG | 0.607844 | 3.2:+77204300 | MS.gene06898:CDS |
| TGTGAATGAGATAGCAGCTG+AGG | 0.626703 | 3.2:+77204273 | MS.gene06898:CDS |
| GATGGTAATCCAAATGCGAA+AGG | 0.635273 | 3.2:+77202623 | MS.gene06898:intron |
| AGAGAGTAAATGGGTTGACG+CGG | 0.680356 | 3.2:-77202370 | None:intergenic |
| ACTCGGCATACGCCTCTGGA+CGG | 0.681095 | 3.2:-77204393 | None:intergenic |
| GAACATTACAGGTAAAGTCG+AGG | 0.683090 | 3.2:-77202393 | None:intergenic |
| CAAATGCGAAAGGAAAGTGG+TGG | 0.689015 | 3.2:+77202633 | MS.gene06898:CDS |
| ATACCTGCGAGTTAACACTC+AGG | 0.734021 | 3.2:-77202522 | None:intergenic |
| AGCAACATGGATGAGTATGG+AGG | 0.751548 | 3.2:+77204313 | MS.gene06898:CDS |
| GTGGTGGACGAAGAATATGG+AGG | 0.759179 | 3.2:+77202649 | MS.gene06898:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTAATTAAATAA+GGG | + | chr3.2:77202889-77202908 | MS.gene06898:intron | 0.0% |
| !!! | TTTTTAATTTTAATTAAATA+AGG | + | chr3.2:77202888-77202907 | MS.gene06898:intron | 0.0% |
| !!! | TTATTTTACGATTATTATTT+GGG | - | chr3.2:77202764-77202783 | None:intergenic | 10.0% |
| !!! | TTTATTTTACGATTATTATT+TGG | - | chr3.2:77202765-77202784 | None:intergenic | 10.0% |
| !!! | ACTACTTGTTTTTTTTTTTT+TGG | - | chr3.2:77203334-77203353 | None:intergenic | 15.0% |
| !!! | ATTTTAATTAAATAAGGGTT+AGG | + | chr3.2:77202894-77202913 | MS.gene06898:intron | 15.0% |
| !!! | TAATTCTAATATTCTAAAGT+TGG | + | chr3.2:77203037-77203056 | MS.gene06898:intron | 15.0% |
| !! | AAATGTTATAGCTGTTAATT+TGG | - | chr3.2:77203184-77203203 | None:intergenic | 20.0% |
| !! | GACACAAATCAAATTTAATT+TGG | - | chr3.2:77203841-77203860 | None:intergenic | 20.0% |
| !! | TAAAACTCTTTCAAATAATG+AGG | - | chr3.2:77204439-77204458 | None:intergenic | 20.0% |
| ! | AAGAAAGATATGAACATTAC+AGG | - | chr3.2:77202407-77202426 | None:intergenic | 25.0% |
| ! | AATTTATACAAACAGGTAAG+AGG | - | chr3.2:77202740-77202759 | None:intergenic | 25.0% |
| ! | ATTACTCAAAACATGAAGAA+TGG | - | chr3.2:77204350-77204369 | None:intergenic | 25.0% |
| ! | ATTTATTGGATTGCATGTTA+CGG | + | chr3.2:77203101-77203120 | MS.gene06898:intron | 25.0% |
| ! | TTGATTGAATGAATGCATAA+TGG | + | chr3.2:77204009-77204028 | MS.gene06898:intron | 25.0% |
| ! | TTTGGGAAATTTATACAAAC+AGG | - | chr3.2:77202747-77202766 | None:intergenic | 25.0% |
| !! | CTTAAATATTCAAGTTCATC+GGG | - | chr3.2:77204089-77204108 | None:intergenic | 25.0% |
| !! | GCTTAAATATTCAAGTTCAT+CGG | - | chr3.2:77204090-77204109 | None:intergenic | 25.0% |
| !!! | AAATGTTTTGGGTTAAAATG+TGG | + | chr3.2:77203671-77203690 | MS.gene06898:intron | 25.0% |
| !!! | ATTCTAAAGTTGGAAAGTTA+GGG | + | chr3.2:77203047-77203066 | MS.gene06898:intron | 25.0% |
| !!! | TATTCTAAAGTTGGAAAGTT+AGG | + | chr3.2:77203046-77203065 | MS.gene06898:intron | 25.0% |
| !!! | TTGATTTTGAAGTAACAGTT+TGG | - | chr3.2:77202449-77202468 | None:intergenic | 25.0% |
| AAATGTGTTTGTAGTTCTCT+TGG | + | chr3.2:77202934-77202953 | MS.gene06898:intron | 30.0% | |
| AACCCAAAACATTTAGACAT+TGG | - | chr3.2:77203665-77203684 | None:intergenic | 30.0% | |
| AATGTGTTTGTAGTTCTCTT+GGG | + | chr3.2:77202935-77202954 | MS.gene06898:intron | 30.0% | |
| ACATTTAGACATTGGGTATA+TGG | - | chr3.2:77203657-77203676 | None:intergenic | 30.0% | |
| ACCCAAAACATTTAGACATT+GGG | - | chr3.2:77203664-77203683 | None:intergenic | 30.0% | |
| ATTCATTAAGGAACACGATA+AGG | + | chr3.2:77203415-77203434 | MS.gene06898:intron | 30.0% | |
| TCTAGTGATGTGATTCATTA+AGG | + | chr3.2:77203403-77203422 | MS.gene06898:intron | 30.0% | |
| TGATATCATGCAAAACAACA+GGG | - | chr3.2:77203543-77203562 | None:intergenic | 30.0% | |
| TTCATTAAGGAACACGATAA+GGG | + | chr3.2:77203416-77203435 | MS.gene06898:intron | 30.0% | |
| TTGCAAAAAATGCTTTCATG+TGG | + | chr3.2:77203805-77203824 | MS.gene06898:intron | 30.0% | |
| ! | ACCCAATGTCTAAATGTTTT+GGG | + | chr3.2:77203660-77203679 | MS.gene06898:intron | 30.0% |
| ! | AGTTTAAAACCTTTCCTTTC+CGG | - | chr3.2:77203015-77203034 | None:intergenic | 30.0% |
| ! | TACCCAATGTCTAAATGTTT+TGG | + | chr3.2:77203659-77203678 | MS.gene06898:intron | 30.0% |
| ! | TCCTTTTATATATCCTCTCT+TGG | - | chr3.2:77203478-77203497 | None:intergenic | 30.0% |
| !! | TTCTAAAGTTGGAAAGTTAG+GGG | + | chr3.2:77203048-77203067 | MS.gene06898:intron | 30.0% |
| ACATTAGGCTCAATACAAAG+AGG | + | chr3.2:77202958-77202977 | MS.gene06898:intron | 35.0% | |
| ACATTGTGAGACAAGAAAGA+TGG | - | chr3.2:77202700-77202719 | None:intergenic | 35.0% | |
| ACTTTCTCAGTAGTTAGTAG+TGG | + | chr3.2:77202850-77202869 | MS.gene06898:intron | 35.0% | |
| ATGATTCATGCTATTGACAC+AGG | + | chr3.2:77204046-77204065 | MS.gene06898:intron | 35.0% | |
| CAGAAGATAGAATTAAGAGC+TGG | + | chr3.2:77202481-77202500 | MS.gene06898:intron | 35.0% | |
| CAGCAACTACAACAACATAA+AGG | - | chr3.2:77203610-77203629 | None:intergenic | 35.0% | |
| CGATCTGGATTATAGATTTG+TGG | + | chr3.2:77203154-77203173 | MS.gene06898:intron | 35.0% | |
| GCCAAGAGAGGATATATAAA+AGG | + | chr3.2:77203474-77203493 | MS.gene06898:intron | 35.0% | |
| GTCTTTGCTTCTTTCTATCA+TGG | + | chr3.2:77203858-77203877 | MS.gene06898:intron | 35.0% | |
| GTGATATCATGCAAAACAAC+AGG | - | chr3.2:77203544-77203563 | None:intergenic | 35.0% | |
| TATGTTGTTGTAGTTGCTGT+TGG | + | chr3.2:77203611-77203630 | MS.gene06898:intron | 35.0% | |
| TGAATGCATAATGGTTATGC+TGG | + | chr3.2:77204018-77204037 | MS.gene06898:intron | 35.0% | |
| TGAGACATATACCAGATACT+GGG | - | chr3.2:77203898-77203917 | None:intergenic | 35.0% | |
| ! | ATTTGTGATGTGATGATGCA+AGG | + | chr3.2:77203200-77203219 | MS.gene06898:intron | 35.0% |
| ! | CATTTTGCTGCAGATAGAAA+AGG | + | chr3.2:77204117-77204136 | MS.gene06898:intron | 35.0% |
| ! | TTTGTCGTGGATGGATTTAT+TGG | + | chr3.2:77203087-77203106 | MS.gene06898:intron | 35.0% |
| ! | TTTGTGATGTGATGATGCAA+GGG | + | chr3.2:77203201-77203220 | MS.gene06898:intron | 35.0% |
| !! | ATTTTGATGCCATAGTGAAG+TGG | + | chr3.2:77203944-77203963 | MS.gene06898:intron | 35.0% |
| AAAGTCGAGGAGAGAGTAAA+TGG | - | chr3.2:77202383-77202402 | None:intergenic | 40.0% | |
| AACAACAGTTGGGTCATTAG+GGG | - | chr3.2:77203750-77203769 | None:intergenic | 40.0% | |
| AAGGAACACGATAAGGGAAA+AGG | + | chr3.2:77203422-77203441 | MS.gene06898:intron | 40.0% | |
| AAGTCGAGGAGAGAGTAAAT+GGG | - | chr3.2:77202382-77202401 | None:intergenic | 40.0% | |
| AATATGGAGGCGAAGGAAAA+TGG | + | chr3.2:77202662-77202681 | MS.gene06898:CDS | 40.0% | |
| ACATATACCAGATACTGGGA+TGG | - | chr3.2:77203894-77203913 | None:intergenic | 40.0% | |
| AGAGGTTAAAGAGTTTGTCG+TGG | + | chr3.2:77203074-77203093 | MS.gene06898:intron | 40.0% | |
| AGTAATCGAGTGAATGATGC+CGG | + | chr3.2:77204364-77204383 | MS.gene06898:CDS | 40.0% | |
| AGTCTAGTGTGATCATTCCT+CGG | + | chr3.2:77203722-77203741 | MS.gene06898:intron | 40.0% | |
| ATCCAAATGCGAAAGGAAAG+TGG | + | chr3.2:77202630-77202649 | MS.gene06898:CDS | 40.0% | |
| ATGTGCATACCACTTCACTA+TGG | - | chr3.2:77203956-77203975 | None:intergenic | 40.0% | |
| CAACAACAGTTGGGTCATTA+GGG | - | chr3.2:77203751-77203770 | None:intergenic | 40.0% | |
| CAACATAAAGGTCACATGCA+TGG | - | chr3.2:77203598-77203617 | None:intergenic | 40.0% | |
| CATGCATTTGTTCTGCAAGA+TGG | + | chr3.2:77202605-77202624 | MS.gene06898:intron | 40.0% | |
| CTTTCCGGAAAATGAGCAAA+CGG | - | chr3.2:77203000-77203019 | None:intergenic | 40.0% | |
| GAACATTACAGGTAAAGTCG+AGG | - | chr3.2:77202396-77202415 | None:intergenic | 40.0% | |
| GATGGTAATCCAAATGCGAA+AGG | + | chr3.2:77202623-77202642 | MS.gene06898:intron | 40.0% | |
| GTGAAACAGAATTAGCGATC+TGG | + | chr3.2:77203139-77203158 | MS.gene06898:intron | 40.0% | |
| GTGAGACATATACCAGATAC+TGG | - | chr3.2:77203899-77203918 | None:intergenic | 40.0% | |
| GTGAGGAAGATAAAGGATGA+GGG | + | chr3.2:77204190-77204209 | MS.gene06898:CDS | 40.0% | |
| GTTAAAGAGTTTGTCGTGGA+TGG | + | chr3.2:77203078-77203097 | MS.gene06898:intron | 40.0% | |
| GTTCATATCGACAAACACCT+CGG | - | chr3.2:77203777-77203796 | None:intergenic | 40.0% | |
| TCTTGCAATTGGACATAGAG+AGG | + | chr3.2:77204218-77204237 | MS.gene06898:CDS | 40.0% | |
| TCTTTCAAATAATGAGGCCC+AGG | - | chr3.2:77204433-77204452 | None:intergenic | 40.0% | |
| TGAGGGAAAACTCTTGCAAT+TGG | + | chr3.2:77204207-77204226 | MS.gene06898:CDS | 40.0% | |
| TGATGCAAGGGATTATTGGA+AGG | + | chr3.2:77203213-77203232 | MS.gene06898:intron | 40.0% | |
| TGATTCTCTGCCCTACAAAA+TGG | + | chr3.2:77204141-77204160 | MS.gene06898:CDS | 40.0% | |
| TGTAGTTCTCTTGGGACATT+AGG | + | chr3.2:77202943-77202962 | MS.gene06898:intron | 40.0% | |
| TTTCCGGAAAATGAGCAAAC+GGG | - | chr3.2:77202999-77203018 | None:intergenic | 40.0% | |
| ! | AATTGCAATGTGTTGCTGCA+AGG | + | chr3.2:77203294-77203313 | MS.gene06898:intron | 40.0% |
| ! | GTGATGATGCAAGGGATTAT+TGG | + | chr3.2:77203209-77203228 | MS.gene06898:intron | 40.0% |
| !! | AAAGTGGTGGACGAAGAATA+TGG | + | chr3.2:77202646-77202665 | MS.gene06898:CDS | 40.0% |
| ACAACAGTTGGGTCATTAGG+GGG | - | chr3.2:77203749-77203768 | None:intergenic | 45.0% | |
| AGCAACATGGATGAGTATGG+AGG | + | chr3.2:77204313-77204332 | MS.gene06898:CDS | 45.0% | |
| AGGTTTGAAGGGATCAGACT+CGG | - | chr3.2:77204413-77204432 | None:intergenic | 45.0% | |
| AGTCTGATCCCTTCAAACCT+GGG | + | chr3.2:77204413-77204432 | MS.gene06898:CDS | 45.0% | |
| ATAATGAGGCCCAGGTTTGA+AGG | - | chr3.2:77204425-77204444 | None:intergenic | 45.0% | |
| ATACCTGCGAGTTAACACTC+AGG | - | chr3.2:77202525-77202544 | None:intergenic | 45.0% | |
| CAAATGCGAAAGGAAAGTGG+TGG | + | chr3.2:77202633-77202652 | MS.gene06898:CDS | 45.0% | |
| CACATATCCATCCCAGTATC+TGG | + | chr3.2:77203884-77203903 | MS.gene06898:intron | 45.0% | |
| CACCACTTTCCTTTCGCATT+TGG | - | chr3.2:77202635-77202654 | None:intergenic | 45.0% | |
| CATTGGGTATATGGATCCTC+TGG | - | chr3.2:77203648-77203667 | None:intergenic | 45.0% | |
| CGCTTATGTTGAGAGCAACA+TGG | + | chr3.2:77204300-77204319 | MS.gene06898:CDS | 45.0% | |
| GAGAGCAACATGGATGAGTA+TGG | + | chr3.2:77204310-77204329 | MS.gene06898:CDS | 45.0% | |
| GCAACAACAGTTGGGTCATT+AGG | - | chr3.2:77203752-77203771 | None:intergenic | 45.0% | |
| GGTGAGGAAGATAAAGGATG+AGG | + | chr3.2:77204189-77204208 | MS.gene06898:CDS | 45.0% | |
| GTTGCTCTCAACATAAGCGT+TGG | - | chr3.2:77204299-77204318 | None:intergenic | 45.0% | |
| TAATGAGGCCCAGGTTTGAA+GGG | - | chr3.2:77204424-77204443 | None:intergenic | 45.0% | |
| TGTGAATGAGATAGCAGCTG+AGG | + | chr3.2:77204273-77204292 | MS.gene06898:CDS | 45.0% | |
| TTCCGGAAAATGAGCAAACG+GGG | - | chr3.2:77202998-77203017 | None:intergenic | 45.0% | |
| TTGGAAAGTTAGGGGACTAG+AGG | + | chr3.2:77203056-77203075 | MS.gene06898:intron | 45.0% | |
| ! | AGGAATGCGCTCCATTTTGT+AGG | - | chr3.2:77204155-77204174 | None:intergenic | 45.0% |
| ! | CACAGGTTTTCACGAGTATC+AGG | + | chr3.2:77204063-77204082 | MS.gene06898:intron | 45.0% |
| ! | CGTTTGCTCATTTTCCGGAA+AGG | + | chr3.2:77202998-77203017 | MS.gene06898:intron | 45.0% |
| ! | GCTCATTTTCCGGAAAGGAA+AGG | + | chr3.2:77203003-77203022 | MS.gene06898:intron | 45.0% |
| ! | GGAATGCGCTCCATTTTGTA+GGG | - | chr3.2:77204154-77204173 | None:intergenic | 45.0% |
| !! | AGAGAGTAAATGGGTTGACG+CGG | - | chr3.2:77202373-77202392 | None:intergenic | 45.0% |
| AAGGGAAAAGGTAGCGTGAC+AGG | + | chr3.2:77203434-77203453 | MS.gene06898:intron | 50.0% | |
| ACCTCGGTAGCAACAACAGT+TGG | - | chr3.2:77203761-77203780 | None:intergenic | 50.0% | |
| AGGGAAAAGGTAGCGTGACA+GGG | + | chr3.2:77203435-77203454 | MS.gene06898:intron | 50.0% | |
| ATCCGCGAGAGAATGAAGCA+AGG | - | chr3.2:77203569-77203588 | None:intergenic | 50.0% | |
| CACCTTGCTTCATTCTCTCG+CGG | + | chr3.2:77203564-77203583 | MS.gene06898:intron | 50.0% | |
| CCTCGGTAGCAACAACAGTT+GGG | - | chr3.2:77203760-77203779 | None:intergenic | 50.0% | |
| GACGAAGAATATGGAGGCGA+AGG | + | chr3.2:77202655-77202674 | MS.gene06898:CDS | 50.0% | |
| GAGTCTGATCCCTTCAAACC+TGG | + | chr3.2:77204412-77204431 | MS.gene06898:CDS | 50.0% | |
| GGAGCAGGTGAGGAAGATAA+AGG | + | chr3.2:77204183-77204202 | MS.gene06898:CDS | 50.0% | |
| GTTGCTGCAAGGACGAACAT+AGG | + | chr3.2:77203305-77203324 | MS.gene06898:intron | 50.0% | |
| TCCGGAAAATGAGCAAACGG+GGG | - | chr3.2:77202997-77203016 | None:intergenic | 50.0% | |
| TGCATGTTACGGAAGTGAGC+TGG | + | chr3.2:77203112-77203131 | MS.gene06898:intron | 50.0% | |
| TGCGAGTTAACACTCAGGCT+CGG | - | chr3.2:77202520-77202539 | None:intergenic | 50.0% | |
| ! | CATTCCTTTTCTCGAGGAGC+AGG | + | chr3.2:77204168-77204187 | MS.gene06898:CDS | 50.0% |
| ! | GTTGGAGTATCAAGTGCCAG+AGG | + | chr3.2:77203629-77203648 | MS.gene06898:intron | 50.0% |
| ! | TCCCCCGTTTGCTCATTTTC+CGG | + | chr3.2:77202993-77203012 | MS.gene06898:intron | 50.0% |
| !! | GTGGTGGACGAAGAATATGG+AGG | + | chr3.2:77202649-77202668 | MS.gene06898:CDS | 50.0% |
| AGGAGGAGAAGAGCCAAGAG+AGG | + | chr3.2:77203462-77203481 | MS.gene06898:intron | 55.0% | |
| AGGTAGCGTGACAGGGAATG+AGG | + | chr3.2:77203442-77203461 | MS.gene06898:intron | 55.0% | |
| CCCAACTGTTGTTGCTACCG+AGG | + | chr3.2:77203757-77203776 | MS.gene06898:intron | 55.0% | |
| CGCCTCTGGACGGTAAAATC+CGG | - | chr3.2:77204386-77204405 | None:intergenic | 55.0% | |
| CGCGAGAGAATGAAGCAAGG+TGG | - | chr3.2:77203566-77203585 | None:intergenic | 55.0% | |
| CTCACCTGCTCCTCGAGAAA+AGG | - | chr3.2:77204175-77204194 | None:intergenic | 55.0% | |
| GAGCCTGAGTGTTAACTCGC+AGG | + | chr3.2:77202519-77202538 | MS.gene06898:CDS | 55.0% | |
| GCGAGTTAACACTCAGGCTC+GGG | - | chr3.2:77202519-77202538 | None:intergenic | 55.0% | |
| TAGCGTGACAGGGAATGAGG+AGG | + | chr3.2:77203445-77203464 | MS.gene06898:intron | 55.0% | |
| ! | CTTTTCTCGAGGAGCAGGTG+AGG | + | chr3.2:77204173-77204192 | MS.gene06898:CDS | 55.0% |
| ! | GGAGCGCATTCCTTTTCTCG+AGG | + | chr3.2:77204162-77204181 | MS.gene06898:CDS | 55.0% |
| ! | TGCCGGATTTTACCGTCCAG+AGG | + | chr3.2:77204381-77204400 | MS.gene06898:CDS | 55.0% |
| ACTCGGCATACGCCTCTGGA+CGG | - | chr3.2:77204396-77204415 | None:intergenic | 60.0% | |
| TCAGACTCGGCATACGCCTC+TGG | - | chr3.2:77204400-77204419 | None:intergenic | 60.0% | |
| TTGGGTCATTAGGGGGTCCG+AGG | - | chr3.2:77203742-77203761 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77202362 | 77204465 | 77202362 | ID=MS.gene06898 |
| chr3.2 | mRNA | 77202362 | 77204465 | 77202362 | ID=MS.gene06898.t1;Parent=MS.gene06898 |
| chr3.2 | exon | 77202362 | 77202406 | 77202362 | ID=MS.gene06898.t1.exon1;Parent=MS.gene06898.t1 |
| chr3.2 | CDS | 77202362 | 77202406 | 77202362 | ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1 |
| chr3.2 | exon | 77202484 | 77202540 | 77202484 | ID=MS.gene06898.t1.exon2;Parent=MS.gene06898.t1 |
| chr3.2 | CDS | 77202484 | 77202540 | 77202484 | ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1 |
| chr3.2 | exon | 77202624 | 77202683 | 77202624 | ID=MS.gene06898.t1.exon3;Parent=MS.gene06898.t1 |
| chr3.2 | CDS | 77202624 | 77202683 | 77202624 | ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1 |
| chr3.2 | exon | 77204130 | 77204465 | 77204130 | ID=MS.gene06898.t1.exon4;Parent=MS.gene06898.t1 |
| chr3.2 | CDS | 77204130 | 77204465 | 77204130 | ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1 |
| Gene Sequence |
| Protein sequence |
