AlfalfaGEDB | MS.gene06898

M. sativa cultivar XinJiangDaYe / MS.gene06898

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06898.t1	XP_013461426.2	97	165	5	0	1	165	1	165	9.70E-82	312.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06898.t1	Q8VZV9	60.0	155	59	1	11	165	10	161	4.6e-48	192.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06898.t1	A0A396IYW6	97.0	165	5	0	1	165	1	165	7.0e-82	312.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050301	MS.gene06898	0.804238	2.38E-49	-1.69E-46
MS.gene053103	MS.gene06898	0.811787	5.88E-51	-1.69E-46
MS.gene057123	MS.gene06898	0.854627	1.09E-61	-1.69E-46
MS.gene058660	MS.gene06898	0.804873	1.75E-49	-1.69E-46
MS.gene059597	MS.gene06898	0.819729	9.96E-53	-1.69E-46
MS.gene059688	MS.gene06898	0.808116	3.63E-50	-1.69E-46
MS.gene059692	MS.gene06898	0.818814	1.61E-52	-1.69E-46
MS.gene059695	MS.gene06898	0.821156	4.69E-53	-1.69E-46

Showing 1 to 8 of 8 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06898.t1	MTR_3g491820	96.364	165	5	1	1	165	1	164	4.18e-114	320
MS.gene06898.t1	MTR_3g491820	97.710	131	3	0	35	165	1	131	1.46e-92	265
MS.gene06898.t1	MTR_3g491820	99.010	101	1	0	65	165	1	101	1.07e-69	206

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06898.t1	AT5G24314	60.000	155	59	1	11	165	10	161	2.56e-67	202
MS.gene06898.t1	AT5G24314	57.055	163	59	2	11	165	10	169	5.93e-65	196

Showing 1 to 2 of 2 entries

Previous1Next

Find 41 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCGAGGAGAGAGTAAA+TGG	0.219682	3.2:-77202380	None:intergenic
AAAGTGGTGGACGAAGAATA+TGG	0.452551	3.2:+77202646	MS.gene06898:CDS
AAGTCGAGGAGAGAGTAAAT+GGG	0.516542	3.2:-77202379	None:intergenic
AATATGGAGGCGAAGGAAAA+TGG	0.348814	3.2:+77202662	MS.gene06898:CDS
ACTCGGCATACGCCTCTGGA+CGG	0.681095	3.2:-77204393	None:intergenic
AGAGAGTAAATGGGTTGACG+CGG	0.680356	3.2:-77202370	None:intergenic
AGCAACATGGATGAGTATGG+AGG	0.751548	3.2:+77204313	MS.gene06898:CDS
AGGTTTGAAGGGATCAGACT+CGG	0.605147	3.2:-77204410	None:intergenic
AGTAATCGAGTGAATGATGC+CGG	0.544993	3.2:+77204364	MS.gene06898:CDS
AGTCTGATCCCTTCAAACCT+GGG	0.572137	3.2:+77204413	MS.gene06898:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTGTTTGTAGTTCTCT+TGG	+	chr3.2:77202934-77202953	MS.gene06898:intron	30.0%
AACCCAAAACATTTAGACAT+TGG	-	chr3.2:77203665-77203684	None:intergenic	30.0%
AATGTGTTTGTAGTTCTCTT+GGG	+	chr3.2:77202935-77202954	MS.gene06898:intron	30.0%
ACATTTAGACATTGGGTATA+TGG	-	chr3.2:77203657-77203676	None:intergenic	30.0%
ACCCAAAACATTTAGACATT+GGG	-	chr3.2:77203664-77203683	None:intergenic	30.0%
ATTCATTAAGGAACACGATA+AGG	+	chr3.2:77203415-77203434	MS.gene06898:intron	30.0%
TCTAGTGATGTGATTCATTA+AGG	+	chr3.2:77203403-77203422	MS.gene06898:intron	30.0%
TGATATCATGCAAAACAACA+GGG	-	chr3.2:77203543-77203562	None:intergenic	30.0%
TTCATTAAGGAACACGATAA+GGG	+	chr3.2:77203416-77203435	MS.gene06898:intron	30.0%
TTGCAAAAAATGCTTTCATG+TGG	+	chr3.2:77203805-77203824	MS.gene06898:intron	30.0%

Showing 1 to 10 of 144 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	77202362	77204465	77202362	ID=MS.gene06898
chr3.2	mRNA	77202362	77204465	77202362	ID=MS.gene06898.t1;Parent=MS.gene06898
chr3.2	exon	77202362	77202406	77202362	ID=MS.gene06898.t1.exon1;Parent=MS.gene06898.t1
chr3.2	CDS	77202362	77202406	77202362	ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1
chr3.2	exon	77202484	77202540	77202484	ID=MS.gene06898.t1.exon2;Parent=MS.gene06898.t1
chr3.2	CDS	77202484	77202540	77202484	ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1
chr3.2	exon	77202624	77202683	77202624	ID=MS.gene06898.t1.exon3;Parent=MS.gene06898.t1
chr3.2	CDS	77202624	77202683	77202624	ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1
chr3.2	exon	77204130	77204465	77204130	ID=MS.gene06898.t1.exon4;Parent=MS.gene06898.t1
chr3.2	CDS	77204130	77204465	77204130	ID=cds.MS.gene06898.t1;Parent=MS.gene06898.t1

Gene Sequence

>MS.gene06898

ATGGCTCTCCGCGTCAACCCATTTACTCTCTCCTCGACTTTACCTGTAATGTTCATATCTTTCTTTTCAAATCTTTATATTTTTCCAAACTGTTACTTCAAAATCAAATAATTTTCTTGCAGAAGATAGAATTAAGAGCTGGAAATTCACGTAGCCCGAGCCTGAGTGTTAACTCGCAGGTATAAATATAATAACTTCGAAAGTTGTTGAATTTTTTGTTTGCATCATGAAACTGAACTTGTTCATGCATTTGTTCTGCAAGATGGTAATCCAAATGCGAAAGGAAAGTGGTGGACGAAGAATATGGAGGCGAAGGAAAATGGTATCTTCTGCATCCATCTTTCTTGTCTCACAATGTTTTTCTTTTTATGCTTGCCTCTTACCTGTTTGTATAAATTTCCCAAATAATAATCGTAAAATAAAATGAATGACATTAACATGAATTTCATCTATTAATATAGAATGCATTGAAAAGATTGTGTTGTCAAACTTTCTCAGTAGTTAGTAGTGGCTAAATTGTAACAAATTTTTAATTTTAATTAAATAAGGGTTAGGAAGAATTTATGTTGAGTAAATGTGTTTGTAGTTCTCTTGGGACATTAGGCTCAATACAAAGAGGCGCTGAATGTTTTCCCCCGTTTGCTCATTTTCCGGAAAGGAAAGGTTTTAAACTTATAATTCTAATATTCTAAAGTTGGAAAGTTAGGGGACTAGAGGTTAAAGAGTTTGTCGTGGATGGATTTATTGGATTGCATGTTACGGAAGTGAGCTGGAATTGTGAAACAGAATTAGCGATCTGGATTATAGATTTGTGGTGTTCCAAATTAACAGCTATAACATTTGTGATGTGATGATGCAAGGGATTATTGGAAGGTATGTTATAGATTTTTACTGTTACAAGTAAATAAACATGCTACGACATTTGCGATGTGAATTGCAATGTGTTGCTGCAAGGACGAACATAGGAAACCAAAAAAAAAAAAACAAGTAGTGTTTGAACTGTACGTGTATTCTTTACAAAATAAAAGTATTACAAGAGTCTCTAGTGATGTGATTCATTAAGGAACACGATAAGGGAAAAGGTAGCGTGACAGGGAATGAGGAGGAGAAGAGCCAAGAGAGGATATATAAAAGGATCACATTTTGTACTTTTCACATCATTTATATTTACATTTGCACCCTGTTGTTTTGCATGATATCACCACCTTGCTTCATTCTCTCGCGGATTCTTTGCCATGCATGTGACCTTTATGTTGTTGTAGTTGCTGTTGGAGTATCAAGTGCCAGAGGATCCATATACCCAATGTCTAAATGTTTTGGGTTAAAATGTGGTGTTCAAGTCAGTTATGTAGTTGCTCTTAGTCTAGTGTGATCATTCCTCGGACCCCCTAATGACCCAACTGTTGTTGCTACCGAGGTGTTTGTCGATATGAACATAATGATTTGCAAAAAATGCTTTCATGTGGTAAAGATAAACCAAATTAAATTTGATTTGTGTCTTTGCTTCTTTCTATCATGGTTGCACATATCCATCCCAGTATCTGGTATATGTCTCACTCAACAGATACTCATTTTCTGTTGAATTTTGATGCCATAGTGAAGTGGTATGCACATCAAGATGCTTTTATTTCTTCATTTCTAACTATTTTGATTGAATGAATGCATAATGGTTATGCTGGTGTACATGATTCATGCTATTGACACAGGTTTTCACGAGTATCAGGCCCGATGAACTTGAATATTTAAGCAGAAACTCATTTTGCTGCAGATAGAAAAGGATGATTCTCTGCCCTACAAAATGGAGCGCATTCCTTTTCTCGAGGAGCAGGTGAGGAAGATAAAGGATGAGGGAAAACTCTTGCAATTGGACATAGAGAGGTTACTGTTATCAGAAGATAATAAGTATGATTTTGTGAATGAGATAGCAGCTGAGGCCAACGCTTATGTTGAGAGCAACATGGATGAGTATGGAGGTGAGAAGAAAGCCATTCTTCATGTTTTGAGTAATCGAGTGAATGATGCCGGATTTTACCGTCCAGAGGCGTATGCCGAGTCTGATCCCTTCAAACCTGGGCCTCATTATTTGAAAGAGTTTTATACATAA

Protein sequence

>MS.gene06898.t1

MALRVNPFTLSSTLPKIELRAGNSRSPSLSVNSQMVIQMRKESGGRRIWRRRKMIEKDDSLPYKMERIPFLEEQVRKIKDEGKLLQLDIERLLLSEDNKYDFVNEIAAEANAYVESNMDEYGGEKKAILHVLSNRVNDAGFYRPEAYAESDPFKPGPHYLKEFYT