AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058660.t1 MTR_7g078800 96.642 268 9 0 1 268 1 268 0.0 537
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058660.t1 AT4G01310 69.084 262 75 3 4 262 3 261 8.07e-127 361

Find 64 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTCTACCCTTTGATTT+TGG 0.123648 7.4:-27151168 None:intergenic
GAATTACAACATTGGTATTA+AGG 0.259700 7.4:+27150954 MS.gene058660:CDS
ACAACGAAGAAGAAGAGAAT+TGG 0.342752 7.4:-27148083 None:intergenic
AAAACCAACCTGATGAATAT+TGG 0.349771 7.4:-27148256 None:intergenic
ACCACAATCTTCTTAACTTT+AGG 0.360933 7.4:-27149143 None:intergenic
TCTGTGAAAGCTGATGCTTC+TGG 0.361039 7.4:+27148132 MS.gene058660:CDS
TTGAATATCAGCAGCTTTGA+TGG 0.369608 7.4:+27150925 MS.gene058660:CDS
TCTTCTTCGTTGTTCTCTCA+TGG 0.377778 7.4:+27148093 MS.gene058660:CDS
TGATGCTTCTGGTGCTGTAT+TGG 0.397654 7.4:+27148143 MS.gene058660:CDS
TTCCTCGCCCGAGTCTTAAC+AGG 0.398404 7.4:-27149251 None:intergenic
TTGACCTTCCCTGATCTTGA+AGG 0.406375 7.4:-27149285 None:intergenic
CCGTTGCCACCTTCAAGATC+AGG 0.407745 7.4:+27149276 MS.gene058660:CDS
TTAGCTCTGGGAACACAGTT+TGG 0.414360 7.4:-27150978 None:intergenic
CAACGAAGAAGAAGAGAATT+GGG 0.435438 7.4:-27148082 None:intergenic
CTCCTACACCAATATTCATC+AGG 0.443040 7.4:+27148248 MS.gene058660:CDS
TGCACAAAATGCAAAAGGTT+TGG 0.451207 7.4:+27149187 MS.gene058660:CDS
AGCTCGAAATTGAGAGAGAA+AGG 0.454415 7.4:-27148052 None:intergenic
TGCTTCTGGTGCTGTATTGG+TGG 0.457226 7.4:+27148146 MS.gene058660:CDS
CTTGATCTAGCACTGATCAC+TGG 0.459647 7.4:+27149221 MS.gene058660:CDS
CAGAAGAGTGTAGAAGAGAA+GGG 0.460397 7.4:-27148023 None:intergenic
CTAAGTTGATAACGCGGTCT+AGG 0.460763 7.4:-27150873 None:intergenic
GCAGAAGAGTGTAGAAGAGA+AGG 0.463128 7.4:-27148024 None:intergenic
CCTTGAAAATCTCTTGTCCT+AGG 0.465103 7.4:-27150901 None:intergenic
ATCAGCAGCTTTGATGGGAA+TGG 0.466511 7.4:+27150931 MS.gene058660:CDS
TTATCAACTTAGGACTTCCT+AGG 0.473041 7.4:+27150884 MS.gene058660:CDS
CTAGACCGCGTTATCAACTT+AGG 0.474580 7.4:+27150874 MS.gene058660:CDS
ATTGTGGTAAACTGTGGTAT+TGG 0.479842 7.4:+27149158 MS.gene058660:CDS
ATCAGGGAAGGTCAACCACT+TGG 0.482119 7.4:+27149293 MS.gene058660:CDS
GTGTTCCCAGAGCTAAAATC+TGG 0.484598 7.4:+27150985 MS.gene058660:CDS
CCAGAGCTAAAATCTGGTAT+AGG 0.486670 7.4:+27150991 MS.gene058660:CDS
TCAGCAGCTTTGATGGGAAT+GGG 0.496382 7.4:+27150932 MS.gene058660:CDS
GAAGCTGCACAAAATGCAAA+AGG 0.526930 7.4:+27149182 MS.gene058660:CDS
AACTTCAACTCCCTCTCTGA+AGG 0.527309 7.4:-27151100 None:intergenic
GAAGAAGAAGAGAATTGGGT+TGG 0.530860 7.4:-27148078 None:intergenic
GATCCAAAATCAAAGGGTAG+AGG 0.531994 7.4:+27151165 MS.gene058660:CDS
TTGATCTAGCACTGATCACT+GGG 0.532729 7.4:+27149222 MS.gene058660:CDS
CCTGATCTTGAAGGTGGCAA+CGG 0.533580 7.4:-27149276 None:intergenic
TGAATATCAGCAGCTTTGAT+GGG 0.536920 7.4:+27150926 MS.gene058660:CDS
CGTTGCCACCTTCAAGATCA+GGG 0.545237 7.4:+27149277 MS.gene058660:CDS
GGCAGAGACCTGTTAAGACT+CGG 0.549649 7.4:+27149243 MS.gene058660:CDS
GGAGAAATCTGAAGCAGAGA+AGG 0.557353 7.4:+27148167 MS.gene058660:CDS
AGAAGAGTGTAGAAGAGAAG+GGG 0.566918 7.4:-27148022 None:intergenic
TATAGGTACACCTAGAGGAA+TGG 0.575467 7.4:+27151008 MS.gene058660:CDS
CTCTCATGGAAACAACAGAC+TGG 0.584243 7.4:+27148107 MS.gene058660:CDS
ACCTTCCCTGATCTTGAAGG+TGG 0.584511 7.4:-27149282 None:intergenic
GAGAATTCTTCCATAAGCAA+AGG 0.587605 7.4:-27148228 None:intergenic
ATGCAGATATCCATTCCTCT+AGG 0.588286 7.4:-27151018 None:intergenic
TCCTTCTTGATCAGTTCTAG+CGG 0.602168 7.4:-27151049 None:intergenic
ATGGGTATGCCCTTCAGAGA+GGG 0.602286 7.4:+27151090 MS.gene058660:CDS
GCAGAGACCTGTTAAGACTC+GGG 0.607855 7.4:+27149244 MS.gene058660:CDS
AAGAAGATTGTGGTAAACTG+TGG 0.615390 7.4:+27149152 MS.gene058660:CDS
ACTTCAACTCCCTCTCTGAA+GGG 0.615523 7.4:-27151099 None:intergenic
GGGATTGCTGTGACACTCAG+AGG 0.615781 7.4:+27149314 MS.gene058660:CDS
TCAGGGAAGGTCAACCACTT+GGG 0.616213 7.4:+27149294 MS.gene058660:CDS
GCCACCTTCAAGATCAGGGA+AGG 0.616261 7.4:+27149281 MS.gene058660:CDS
GGGAATGGGAATTACAACAT+TGG 0.626171 7.4:+27150946 MS.gene058660:CDS
ACCGCTAGAACTGATCAAGA+AGG 0.627372 7.4:+27151048 MS.gene058660:CDS
GCCTAAAGTTAAGAAGATTG+TGG 0.634345 7.4:+27149142 MS.gene058660:CDS
GACCTGTTAAGACTCGGGCG+AGG 0.646443 7.4:+27149249 MS.gene058660:CDS
AACCTGATGAATATTGGTGT+AGG 0.659149 7.4:-27148250 None:intergenic
CATGGGTATGCCCTTCAGAG+AGG 0.660728 7.4:+27151089 MS.gene058660:CDS
AGTGTCACAGCAATCCCAAG+TGG 0.690222 7.4:-27149308 None:intergenic
TCTGGTATAGGTACACCTAG+AGG 0.704111 7.4:+27151003 MS.gene058660:CDS
GAAGTCCTAAGTTGATAACG+CGG 0.748246 7.4:-27150879 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAATAGTATAAAAAA+TGG - chr7.4:27149437-27149456 None:intergenic 10.0%
!! ATTATTCATATTACTTAAAT+AGG - chr7.4:27149758-27149777 None:intergenic 10.0%
!! TACTAAATAGTATAAAAAAT+GGG - chr7.4:27149436-27149455 None:intergenic 10.0%
!! ACAAAATAATATTTGATCAT+TGG - chr7.4:27150334-27150353 None:intergenic 15.0%
!! CATGTATAATATATTCTTTA+TGG - chr7.4:27150770-27150789 None:intergenic 15.0%
!! TAATGCAAAATACTATAATT+TGG - chr7.4:27150579-27150598 None:intergenic 15.0%
!!! TTCTTTATGGTTTTAAAATA+TGG - chr7.4:27150757-27150776 None:intergenic 15.0%
!! GTTAACAAAATATATTCACT+AGG - chr7.4:27149377-27149396 None:intergenic 20.0%
!! TAAAGATGTTCATAAGATAT+AGG + chr7.4:27150030-27150049 MS.gene058660:intron 20.0%
!! TATTTGAATATGTTGTCATT+TGG + chr7.4:27150503-27150522 MS.gene058660:intron 20.0%
!!! AATTTGAAACTAAGTGAATA+AGG + chr7.4:27148913-27148932 MS.gene058660:intron 20.0%
!!! ATGACATTAAGTTGATAAAT+CGG + chr7.4:27148885-27148904 MS.gene058660:intron 20.0%
!!! GCATTTTCAAAAATTCATTT+TGG - chr7.4:27148817-27148836 None:intergenic 20.0%
!!! TTTAGTATTTAGAACAATGT+CGG + chr7.4:27149449-27149468 MS.gene058660:intron 20.0%
!!! TTTTTTGGTTTTGGTTTAAT+GGG + chr7.4:27148370-27148389 MS.gene058660:intron 20.0%
! AAAAATTGTTCCTTTGCTTA+TGG + chr7.4:27148218-27148237 MS.gene058660:CDS 25.0%
! CAATGTGATCTAAGTTTAAA+TGG - chr7.4:27150004-27150023 None:intergenic 25.0%
! CTCTTTAAGTAGAATCAATT+CGG + chr7.4:27148701-27148720 MS.gene058660:intron 25.0%
! GAATTACAACATTGGTATTA+AGG + chr7.4:27150954-27150973 MS.gene058660:CDS 25.0%
! TAACACAGGATGTTTAATAT+CGG + chr7.4:27150615-27150634 MS.gene058660:intron 25.0%
! TCAAGAAGGACAAAAATTAT+TGG + chr7.4:27151062-27151081 MS.gene058660:CDS 25.0%
! TTCATATTACTTAAATAGGC+CGG - chr7.4:27149754-27149773 None:intergenic 25.0%
!! AACCAATAGGTATTAGATTT+TGG - chr7.4:27150827-27150846 None:intergenic 25.0%
!! AATTGATTCTACTTAAAGAG+AGG - chr7.4:27148701-27148720 None:intergenic 25.0%
!! ACAGTTAAAATTGATTCTAG+AGG - chr7.4:27148766-27148785 None:intergenic 25.0%
!! ACCAATAGGTATTAGATTTT+GGG - chr7.4:27150826-27150845 None:intergenic 25.0%
!! ATTCTCTTTTATCTTGAGAA+TGG + chr7.4:27150416-27150435 MS.gene058660:intron 25.0%
!! TAAAGCCTATTTAGCTTAAA+AGG + chr7.4:27149686-27149705 MS.gene058660:intron 25.0%
!! TAAGATATAGGCTTTTAAAC+AGG + chr7.4:27150042-27150061 MS.gene058660:intron 25.0%
!!! AGGTTGGTTTTTGTTAAATT+TGG + chr7.4:27148268-27148287 MS.gene058660:intron 25.0%
!!! CATTTTGATCCAAAATCAAA+GGG + chr7.4:27151159-27151178 MS.gene058660:CDS 25.0%
!!! CTTTTTTGGTTTTGGTTTAA+TGG + chr7.4:27148369-27148388 MS.gene058660:intron 25.0%
!!! GCTTTTTTCTTAAATAGAGA+AGG + chr7.4:27149650-27149669 MS.gene058660:intron 25.0%
!!! GTAATAGAAAGTGTTTACAT+AGG + chr7.4:27150352-27150371 MS.gene058660:intron 25.0%
!!! GTTAAAGTTTGAGTCTTTTT+TGG + chr7.4:27148355-27148374 MS.gene058660:intron 25.0%
!!! TCATTTTGATCCAAAATCAA+AGG + chr7.4:27151158-27151177 MS.gene058660:CDS 25.0%
!!! TGACATTAAGTTGATAAATC+GGG + chr7.4:27148886-27148905 MS.gene058660:intron 25.0%
!!! TGATTTTGACTTAAATGAGT+TGG + chr7.4:27148582-27148601 MS.gene058660:intron 25.0%
!!! TTAGATTCTAGTTAATTTGC+TGG + chr7.4:27149492-27149511 MS.gene058660:intron 25.0%
!!! TTTGATTTTGCGTTTTTGTT+GGG + chr7.4:27148325-27148344 MS.gene058660:intron 25.0%
!!! TTTTTGGTTTTGGTTTAATG+GGG + chr7.4:27148371-27148390 MS.gene058660:intron 25.0%
AAAACCAACCTGATGAATAT+TGG - chr7.4:27148259-27148278 None:intergenic 30.0%
AATTGCTTCAAGTGTATGTT+TGG + chr7.4:27148513-27148532 MS.gene058660:intron 30.0%
ACCACAATCTTCTTAACTTT+AGG - chr7.4:27149146-27149165 None:intergenic 30.0%
ACCCAAAATCTAATACCTAT+TGG + chr7.4:27150822-27150841 MS.gene058660:intron 30.0%
AGGGACTATATTGATACATA+TGG - chr7.4:27148421-27148440 None:intergenic 30.0%
CAAAATATATTCACTAGGCA+AGG - chr7.4:27149372-27149391 None:intergenic 30.0%
CTCTATTTAAGAAAAAAGCC+TGG - chr7.4:27149649-27149668 None:intergenic 30.0%
CTTAGAGTAAATACTCAAGT+TGG - chr7.4:27149065-27149084 None:intergenic 30.0%
TGATAACATGTCTATAGAGA+GGG + chr7.4:27148949-27148968 MS.gene058660:intron 30.0%
TGTGTAGTATAATGCATCTT+TGG + chr7.4:27150251-27150270 MS.gene058660:intron 30.0%
TTGCAATATCCATAATGTGA+GGG - chr7.4:27148440-27148459 None:intergenic 30.0%
TTTGCAATATCCATAATGTG+AGG - chr7.4:27148441-27148460 None:intergenic 30.0%
! AGTTGGTACTCGAAATTAAA+GGG - chr7.4:27149048-27149067 None:intergenic 30.0%
! ATAATCAACACGAGGTTTTT+GGG - chr7.4:27149940-27149959 None:intergenic 30.0%
! TTGATAACATGTCTATAGAG+AGG + chr7.4:27148948-27148967 MS.gene058660:intron 30.0%
!! AAGTTGGTACTCGAAATTAA+AGG - chr7.4:27149049-27149068 None:intergenic 30.0%
!! ACAAAAATTATTGGCTCTCA+TGG + chr7.4:27151071-27151090 MS.gene058660:CDS 30.0%
!! ATAGGCTTTAAAAAAAGCCT+AGG - chr7.4:27149676-27149695 None:intergenic 30.0%
!! CAAAAATTATTGGCTCTCAT+GGG + chr7.4:27151072-27151091 MS.gene058660:CDS 30.0%
!! GACATTAAGTTGATAAATCG+GGG + chr7.4:27148887-27148906 MS.gene058660:intron 30.0%
!! GTTTGATTTTGCGTTTTTGT+TGG + chr7.4:27148324-27148343 MS.gene058660:intron 30.0%
!! TATTGTTTTTCCCTCTTTTC+AGG + chr7.4:27149118-27149137 MS.gene058660:intron 30.0%
!!! GTTTGAGTCTTTTTTGGTTT+TGG + chr7.4:27148361-27148380 MS.gene058660:intron 30.0%
!!! TAGGTATTAGATTTTGGGTT+CGG - chr7.4:27150821-27150840 None:intergenic 30.0%
!!! TCATTTTACACGCTTTGTTT+TGG - chr7.4:27150397-27150416 None:intergenic 30.0%
!!! TTGGACTGTTTTTTTGTGAT+GGG + chr7.4:27148287-27148306 MS.gene058660:intron 30.0%
!!! TTTGGACTGTTTTTTTGTGA+TGG + chr7.4:27148286-27148305 MS.gene058660:intron 30.0%
!!! TTTTGACTTAAATGAGTTGG+AGG + chr7.4:27148585-27148604 MS.gene058660:intron 30.0%
AAAAGCCTCTTAAGCCTATT+AGG + chr7.4:27149728-27149747 MS.gene058660:intron 35.0%
AACCTGATGAATATTGGTGT+AGG - chr7.4:27148253-27148272 None:intergenic 35.0%
AAGAAGATTGTGGTAAACTG+TGG + chr7.4:27149152-27149171 MS.gene058660:CDS 35.0%
ACAACGAAGAAGAAGAGAAT+TGG - chr7.4:27148086-27148105 None:intergenic 35.0%
ACATCCTGTGTTAGAATATG+AGG - chr7.4:27150608-27150627 None:intergenic 35.0%
ACTTGAAGCAATTCAACAGA+GGG - chr7.4:27148506-27148525 None:intergenic 35.0%
AGAAGCAATTCTGACATGTT+TGG - chr7.4:27148740-27148759 None:intergenic 35.0%
AGGCTTCAGAAAAATATGGT+AGG + chr7.4:27150144-27150163 MS.gene058660:intron 35.0%
ATTGTGGTAAACTGTGGTAT+TGG + chr7.4:27149158-27149177 MS.gene058660:CDS 35.0%
CAACGAAGAAGAAGAGAATT+GGG - chr7.4:27148085-27148104 None:intergenic 35.0%
CAATATAGTCCCTCACATTA+TGG + chr7.4:27148428-27148447 MS.gene058660:intron 35.0%
CATAAAAAACCTGGATGTTG+CGG + chr7.4:27150711-27150730 MS.gene058660:intron 35.0%
CCTCTCCATTTGTATTTGTA+GGG + chr7.4:27148856-27148875 MS.gene058660:intron 35.0%
CTAGTCCCTACAAATACAAA+TGG - chr7.4:27148864-27148883 None:intergenic 35.0%
GAGAATTCTTCCATAAGCAA+AGG - chr7.4:27148231-27148250 None:intergenic 35.0%
GAGACATCACATAAAAAACC+TGG + chr7.4:27150702-27150721 MS.gene058660:intron 35.0%
GCCTAAAGTTAAGAAGATTG+TGG + chr7.4:27149142-27149161 MS.gene058660:CDS 35.0%
GCTTAGGCTTCAGAAAAATA+TGG + chr7.4:27150140-27150159 MS.gene058660:intron 35.0%
TACACCAATATTCATCAGGT+TGG + chr7.4:27148252-27148271 MS.gene058660:intron 35.0%
TCCTCTCCATTTGTATTTGT+AGG + chr7.4:27148855-27148874 MS.gene058660:intron 35.0%
TCTGTCGAATATCAACCAAT+AGG - chr7.4:27150840-27150859 None:intergenic 35.0%
TGCACAAAATGCAAAAGGTT+TGG + chr7.4:27149187-27149206 MS.gene058660:CDS 35.0%
TTAAGTAGAATCAATTCGGC+AGG + chr7.4:27148705-27148724 MS.gene058660:intron 35.0%
TTAGCCTCATATTCTAACAC+AGG + chr7.4:27150601-27150620 MS.gene058660:intron 35.0%
TTATCAACTTAGGACTTCCT+AGG + chr7.4:27150884-27150903 MS.gene058660:CDS 35.0%
TTCTTAAATAGAGAAGGCCT+AGG + chr7.4:27149656-27149675 MS.gene058660:intron 35.0%
! ACTTCTTTTTGCGAACTACT+TGG - chr7.4:27151128-27151147 None:intergenic 35.0%
! CTTCTTTTTGCGAACTACTT+GGG - chr7.4:27151127-27151146 None:intergenic 35.0%
! GAGGTAAAGTGATTTGTGTT+CGG + chr7.4:27148604-27148623 MS.gene058660:intron 35.0%
! GATAATCAACACGAGGTTTT+TGG - chr7.4:27149941-27149960 None:intergenic 35.0%
! GGATGTTTAATATCGGTTAG+CGG + chr7.4:27150622-27150641 MS.gene058660:intron 35.0%
! TGAATATCAGCAGCTTTGAT+GGG + chr7.4:27150926-27150945 MS.gene058660:CDS 35.0%
! TGGATCACATGTAAGCTTTT+TGG + chr7.4:27150271-27150290 MS.gene058660:intron 35.0%
! TTGAATATCAGCAGCTTTGA+TGG + chr7.4:27150925-27150944 MS.gene058660:CDS 35.0%
! TTTGAGATTGCGGAAAATTG+AGG + chr7.4:27150664-27150683 MS.gene058660:intron 35.0%
!! CTCTTTTGATAATCAACACG+AGG - chr7.4:27149948-27149967 None:intergenic 35.0%
!!! ACATGTAAGCTTTTTGGAGT+TGG + chr7.4:27150277-27150296 MS.gene058660:intron 35.0%
!!! CATGTAAGCTTTTTGGAGTT+GGG + chr7.4:27150278-27150297 MS.gene058660:intron 35.0%
!!! CTATACCAGATTTTAGCTCT+GGG - chr7.4:27150993-27151012 None:intergenic 35.0%
AAATGTCTTGGAGTTAGGGA+TGG - chr7.4:27150213-27150232 None:intergenic 40.0%
AACATGTCTATAGAGAGGGA+TGG + chr7.4:27148953-27148972 MS.gene058660:intron 40.0%
AACTTTAGGCACCTGAAAAG+AGG - chr7.4:27149132-27149151 None:intergenic 40.0%
AATGTCTTGGAGTTAGGGAT+GGG - chr7.4:27150212-27150231 None:intergenic 40.0%
ACTTTAGGCACCTGAAAAGA+GGG - chr7.4:27149131-27149150 None:intergenic 40.0%
AGCCAAATGTCTTGGAGTTA+GGG - chr7.4:27150217-27150236 None:intergenic 40.0%
AGCTCGAAATTGAGAGAGAA+AGG - chr7.4:27148055-27148074 None:intergenic 40.0%
ATCCCTAACTCCAAGACATT+TGG + chr7.4:27150212-27150231 MS.gene058660:intron 40.0%
ATGCAGATATCCATTCCTCT+AGG - chr7.4:27151021-27151040 None:intergenic 40.0%
CAAACAGTAGCCAAATGTCT+TGG - chr7.4:27150225-27150244 None:intergenic 40.0%
CACTTGAAGCAATTCAACAG+AGG - chr7.4:27148507-27148526 None:intergenic 40.0%
CCAGAGCTAAAATCTGGTAT+AGG + chr7.4:27150991-27151010 MS.gene058660:CDS 40.0%
CCCTACAAATACAAATGGAG+AGG - chr7.4:27148859-27148878 None:intergenic 40.0%
CCTTGAAAATCTCTTGTCCT+AGG - chr7.4:27150904-27150923 None:intergenic 40.0%
CGGAAAATTGAGGTCAAACA+CGG + chr7.4:27150674-27150693 MS.gene058660:intron 40.0%
CTAAAAAGTAGGCCTATGAC+AGG + chr7.4:27150106-27150125 MS.gene058660:intron 40.0%
CTCCTACACCAATATTCATC+AGG + chr7.4:27148248-27148267 MS.gene058660:CDS 40.0%
GAAGAAGAAGAGAATTGGGT+TGG - chr7.4:27148081-27148100 None:intergenic 40.0%
GAAGCTGCACAAAATGCAAA+AGG + chr7.4:27149182-27149201 MS.gene058660:CDS 40.0%
GATCCAAAATCAAAGGGTAG+AGG + chr7.4:27151165-27151184 MS.gene058660:CDS 40.0%
GCTGGTATAGTTAGATGCAT+TGG + chr7.4:27149510-27149529 MS.gene058660:intron 40.0%
GGGAATGGGAATTACAACAT+TGG + chr7.4:27150946-27150965 MS.gene058660:CDS 40.0%
TAGCCAAATGTCTTGGAGTT+AGG - chr7.4:27150218-27150237 None:intergenic 40.0%
TATAGGTACACCTAGAGGAA+TGG + chr7.4:27151008-27151027 MS.gene058660:CDS 40.0%
TCAGAAAAATATGGTAGGCC+AGG + chr7.4:27150149-27150168 MS.gene058660:intron 40.0%
TCTTCTTCGTTGTTCTCTCA+TGG + chr7.4:27148093-27148112 MS.gene058660:CDS 40.0%
TTTAAGAAAAAAGCCTGGCC+TGG - chr7.4:27149644-27149663 None:intergenic 40.0%
! AGAAGAGTGTAGAAGAGAAG+GGG - chr7.4:27148025-27148044 None:intergenic 40.0%
! CAGAAGAGTGTAGAAGAGAA+GGG - chr7.4:27148026-27148045 None:intergenic 40.0%
! CCTAGGACAAGAGATTTTCA+AGG + chr7.4:27150901-27150920 MS.gene058660:CDS 40.0%
! CCTATTTAGCTTAAAAGGCC+AGG + chr7.4:27149691-27149710 MS.gene058660:intron 40.0%
! GGTTCTGTGTTGACAAGAAT+TGG + chr7.4:27148534-27148553 MS.gene058660:intron 40.0%
! TCCTTCTTGATCAGTTCTAG+CGG - chr7.4:27151052-27151071 None:intergenic 40.0%
! TGCGTTTTTGTTGGGTTTGT+GGG + chr7.4:27148333-27148352 MS.gene058660:intron 40.0%
! TTGCGTTTTTGTTGGGTTTG+TGG + chr7.4:27148332-27148351 MS.gene058660:intron 40.0%
!! CCTGGCCTTTTAAGCTAAAT+AGG - chr7.4:27149694-27149713 None:intergenic 40.0%
!! GAAGTCCTAAGTTGATAACG+CGG - chr7.4:27150882-27150901 None:intergenic 40.0%
!! TCTCCTCTACCCTTTGATTT+TGG - chr7.4:27151171-27151190 None:intergenic 40.0%
!! TTGATCTAGCACTGATCACT+GGG + chr7.4:27149222-27149241 MS.gene058660:CDS 40.0%
!!! ACACGCTTTGTTTTGGTATG+TGG - chr7.4:27150390-27150409 None:intergenic 40.0%
!!! ATTTTTCTGAAGCCTAAGCC+TGG - chr7.4:27150139-27150158 None:intergenic 40.0%
!!! CACGCTTTGTTTTGGTATGT+GGG - chr7.4:27150389-27150408 None:intergenic 40.0%
!!! CCTATACCAGATTTTAGCTC+TGG - chr7.4:27150994-27151013 None:intergenic 40.0%
!!! CTGTCATAGGCCTACTTTTT+AGG - chr7.4:27150108-27150127 None:intergenic 40.0%
AAAATATGGTCTGCAGACCG+TGG - chr7.4:27150743-27150762 None:intergenic 45.0%
AAATATGGTAGGCCAGGCTT+AGG + chr7.4:27150155-27150174 MS.gene058660:intron 45.0%
AACTTCAACTCCCTCTCTGA+AGG - chr7.4:27151103-27151122 None:intergenic 45.0%
ACCGCTAGAACTGATCAAGA+AGG + chr7.4:27151048-27151067 MS.gene058660:CDS 45.0%
ACTTCAACTCCCTCTCTGAA+GGG - chr7.4:27151102-27151121 None:intergenic 45.0%
AGACTACTCCAAGTAGGGAT+GGG + chr7.4:27149570-27149589 MS.gene058660:intron 45.0%
ATTGAGGTCAAACACGGTTG+TGG + chr7.4:27150680-27150699 MS.gene058660:intron 45.0%
CAAGGAGACTACTCCAAGTA+GGG + chr7.4:27149565-27149584 MS.gene058660:intron 45.0%
CTAGACCGCGTTATCAACTT+AGG + chr7.4:27150874-27150893 MS.gene058660:CDS 45.0%
CTCTCATGGAAACAACAGAC+TGG + chr7.4:27148107-27148126 MS.gene058660:CDS 45.0%
CTTAAATAGGCCGGCCTAAT+AGG - chr7.4:27149745-27149764 None:intergenic 45.0%
GTGTTCCCAGAGCTAAAATC+TGG + chr7.4:27150985-27151004 MS.gene058660:CDS 45.0%
TATCAGGCTTTCAGAAGGTC+AGG + chr7.4:27150076-27150095 MS.gene058660:intron 45.0%
TCAAGGAGACTACTCCAAGT+AGG + chr7.4:27149564-27149583 MS.gene058660:intron 45.0%
TCTGGTATAGGTACACCTAG+AGG + chr7.4:27151003-27151022 MS.gene058660:CDS 45.0%
TCTGTGAAAGCTGATGCTTC+TGG + chr7.4:27148132-27148151 MS.gene058660:CDS 45.0%
TTGACCTTCCCTGATCTTGA+AGG - chr7.4:27149288-27149307 None:intergenic 45.0%
TTGGAGTTAGGGATGGGAAT+AGG - chr7.4:27150206-27150225 None:intergenic 45.0%
! AGGCTTTTAAACAGGCTAGC+AGG + chr7.4:27150050-27150069 MS.gene058660:intron 45.0%
! ATCAGCAGCTTTGATGGGAA+TGG + chr7.4:27150931-27150950 MS.gene058660:CDS 45.0%
! ATGAACTCTGATAAGCGCTG+AGG + chr7.4:27149537-27149556 MS.gene058660:intron 45.0%
! GACCTTCTGAAAGCCTGATA+CGG - chr7.4:27150076-27150095 None:intergenic 45.0%
! GCAGAAGAGTGTAGAAGAGA+AGG - chr7.4:27148027-27148046 None:intergenic 45.0%
! GGAGAAATCTGAAGCAGAGA+AGG + chr7.4:27148167-27148186 MS.gene058660:CDS 45.0%
! TCAGCAGCTTTGATGGGAAT+GGG + chr7.4:27150932-27150951 MS.gene058660:CDS 45.0%
! TTAATATCGGTTAGCGGCTG+TGG + chr7.4:27150628-27150647 MS.gene058660:intron 45.0%
!! CTAAGTTGATAACGCGGTCT+AGG - chr7.4:27150876-27150895 None:intergenic 45.0%
!! CTTCGCGATCTTTGAGATTG+CGG + chr7.4:27150654-27150673 MS.gene058660:intron 45.0%
!! CTTGATCTAGCACTGATCAC+TGG + chr7.4:27149221-27149240 MS.gene058660:CDS 45.0%
!! GGCTTAAGAGGCTTTTTGAG+AGG - chr7.4:27149724-27149743 None:intergenic 45.0%
!! TGATGCTTCTGGTGCTGTAT+TGG + chr7.4:27148143-27148162 MS.gene058660:CDS 45.0%
!! TTAGCTCTGGGAACACAGTT+TGG - chr7.4:27150981-27151000 None:intergenic 45.0%
ACCTTCCCTGATCTTGAAGG+TGG - chr7.4:27149285-27149304 None:intergenic 50.0%
AGCTTAAAAGGCCAGGCCAT+AGG + chr7.4:27149698-27149717 MS.gene058660:intron 50.0%
AGTGTCACAGCAATCCCAAG+TGG - chr7.4:27149311-27149330 None:intergenic 50.0%
ATCAGGGAAGGTCAACCACT+TGG + chr7.4:27149293-27149312 MS.gene058660:CDS 50.0%
ATGGGTATGCCCTTCAGAGA+GGG + chr7.4:27151090-27151109 MS.gene058660:CDS 50.0%
CAGGCTCAGGCCTAAAAAGT+AGG + chr7.4:27150095-27150114 MS.gene058660:intron 50.0%
CCTGATCTTGAAGGTGGCAA+CGG - chr7.4:27149279-27149298 None:intergenic 50.0%
CGTTGCCACCTTCAAGATCA+GGG + chr7.4:27149277-27149296 MS.gene058660:CDS 50.0%
CTCCAAGTAGGGATGGGAAT+AGG + chr7.4:27149576-27149595 MS.gene058660:intron 50.0%
GAGACTACTCCAAGTAGGGA+TGG + chr7.4:27149569-27149588 MS.gene058660:intron 50.0%
GCAGAGACCTGTTAAGACTC+GGG + chr7.4:27149244-27149263 MS.gene058660:CDS 50.0%
GCCTCTTAAGCCTATTAGGC+CGG + chr7.4:27149732-27149751 MS.gene058660:intron 50.0%
GGCAGAGACCTGTTAAGACT+CGG + chr7.4:27149243-27149262 MS.gene058660:CDS 50.0%
GTTAGGGATGGGAATAGGCT+AGG - chr7.4:27150201-27150220 None:intergenic 50.0%
TCAGGGAAGGTCAACCACTT+GGG + chr7.4:27149294-27149313 MS.gene058660:CDS 50.0%
!! GAGGCTTTTTGAGAGGCCTA+TGG - chr7.4:27149717-27149736 None:intergenic 50.0%
!! TGCTTCTGGTGCTGTATTGG+TGG + chr7.4:27148146-27148165 MS.gene058660:CDS 50.0%
!! TTTTTGAGAGGCCTATGGCC+TGG - chr7.4:27149712-27149731 None:intergenic 50.0%
AGGCCTTGCAAAGCCTAGCT+CGG + chr7.4:27150175-27150194 MS.gene058660:intron 55.0%
CATGGGTATGCCCTTCAGAG+AGG + chr7.4:27151089-27151108 MS.gene058660:CDS 55.0%
CCGTTGCCACCTTCAAGATC+AGG + chr7.4:27149276-27149295 MS.gene058660:CDS 55.0%
GCCACCTTCAAGATCAGGGA+AGG + chr7.4:27149281-27149300 MS.gene058660:CDS 55.0%
GCCGGCCTAATAGGCTTAAG+AGG - chr7.4:27149736-27149755 None:intergenic 55.0%
GCTTTCAGAAGGTCAGGCTC+AGG + chr7.4:27150082-27150101 MS.gene058660:intron 55.0%
GGCCGTATCAGGCTTTCAGA+AGG + chr7.4:27150071-27150090 MS.gene058660:intron 55.0%
GGCCTATTCCCATCCCTACT+TGG - chr7.4:27149581-27149600 None:intergenic 55.0%
GGGATTGCTGTGACACTCAG+AGG + chr7.4:27149314-27149333 MS.gene058660:CDS 55.0%
TGAAGCCTAAGCCTGGTCTG+CGG - chr7.4:27150132-27150151 None:intergenic 55.0%
TTCCTCGCCCGAGTCTTAAC+AGG - chr7.4:27149254-27149273 None:intergenic 55.0%
!! ATAAGCGCTGAGGCGCTTCA+AGG + chr7.4:27149547-27149566 MS.gene058660:intron 55.0%
AATAGGCCAGACCGGCCTAC+AGG + chr7.4:27149593-27149612 MS.gene058660:intron 60.0%
ACAGGCTAGCAGGCCGTATC+AGG + chr7.4:27150060-27150079 MS.gene058660:intron 60.0%
AGGCCGAGCTAGGCTTTGCA+AGG - chr7.4:27150181-27150200 None:intergenic 60.0%
ATAGGCCAGACCGGCCTACA+GGG + chr7.4:27149594-27149613 MS.gene058660:intron 60.0%
GACCTGTTAAGACTCGGGCG+AGG + chr7.4:27149249-27149268 MS.gene058660:CDS 60.0%
GGAATAGGCTAGGCCGAGCT+AGG - chr7.4:27150191-27150210 None:intergenic 60.0%
GGCTTTGCAAGGCCTAAGCC+TGG - chr7.4:27150170-27150189 None:intergenic 60.0%
GGGATGGGAATAGGCCAGAC+CGG + chr7.4:27149585-27149604 MS.gene058660:intron 60.0%
ACAGGCCGCAGACCAGGCTT+AGG + chr7.4:27150124-27150143 MS.gene058660:intron 65.0%
CCTACGGCCTAGCCTACGAC+AGG + chr7.4:27149618-27149637 MS.gene058660:intron 65.0%
CCTATGACAGGCCGCAGACC+AGG + chr7.4:27150118-27150137 MS.gene058660:intron 65.0%
CCTGGTCTGCGGCCTGTCAT+AGG - chr7.4:27150121-27150140 None:intergenic 65.0%
CCTGTCGTAGGCTAGGCCGT+AGG - chr7.4:27149621-27149640 None:intergenic 65.0%
GGATGTTGCGGCCACAGCCA+CGG + chr7.4:27150723-27150742 MS.gene058660:intron 65.0%
TAGGCCAGACCGGCCTACAG+GGG + chr7.4:27149595-27149614 MS.gene058660:intron 65.0%
TGGCTGTGGCCGCAACATCC+AGG - chr7.4:27150723-27150742 None:intergenic 65.0%
TGGTCTGCAGACCGTGGCTG+TGG - chr7.4:27150737-27150756 None:intergenic 65.0%
AGCCTACGACAGGCCAGGCC+AGG + chr7.4:27149628-27149647 MS.gene058660:intron 70.0%
AGCCTGGCCTGGCCTGTCGT+AGG - chr7.4:27149633-27149652 None:intergenic 70.0%
GACCGGCCTACAGGGGCCTA+CGG + chr7.4:27149602-27149621 MS.gene058660:intron 70.0%
GCTAGGCCGTAGGCCCCTGT+AGG - chr7.4:27149611-27149630 None:intergenic 70.0%
GGCCTAGCCTACGACAGGCC+AGG + chr7.4:27149623-27149642 MS.gene058660:intron 70.0%
GGCCTGGCCTGTCGTAGGCT+AGG - chr7.4:27149628-27149647 None:intergenic 70.0%
TAGGCCCCTGTAGGCCGGTC+TGG - chr7.4:27149602-27149621 None:intergenic 70.0%
GGCCGTAGGCCCCTGTAGGC+CGG - chr7.4:27149607-27149626 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 27148012 27151206 27148012 ID=MS.gene058660
chr7.4 mRNA 27148012 27151206 27148012 ID=MS.gene058660.t1;Parent=MS.gene058660
chr7.4 exon 27148012 27148269 27148012 ID=MS.gene058660.t1.exon1;Parent=MS.gene058660.t1
chr7.4 CDS 27148012 27148269 27148012 ID=cds.MS.gene058660.t1;Parent=MS.gene058660.t1
chr7.4 exon 27149140 27149340 27149140 ID=MS.gene058660.t1.exon2;Parent=MS.gene058660.t1
chr7.4 CDS 27149140 27149340 27149140 ID=cds.MS.gene058660.t1;Parent=MS.gene058660.t1
chr7.4 exon 27150859 27151206 27150859 ID=MS.gene058660.t1.exon3;Parent=MS.gene058660.t1
chr7.4 CDS 27150859 27151206 27150859 ID=cds.MS.gene058660.t1;Parent=MS.gene058660.t1
Gene Sequence

>MS.gene058660

ATGGCTACAACCCCTTCTCTTCTACACTCTTCTGCTTCTTCCTTTCTCTCTCAATTTCGAGCTTTTCCAACCCAATTCTCTTCTTCTTCGTTGTTCTCTCATGGAAACAACAGACTGGTTTCTGTGAAAGCTGATGCTTCTGGTGCTGTATTGGTGGAGAAATCTGAAGCAGAGAAGGTTTATAGACTCAAAACAACTTACAATGAAAAAATTGTTCCTTTGCTTATGGAAGAATTCTCCTACACCAATATTCATCAGGTTGGTTTTTGTTAAATTTGGACTGTTTTTTTGTGATGGGTATTTGTTTAAATTGTTTGATTTTGCGTTTTTGTTGGGTTTGTGGGTTAAAGTTTGAGTCTTTTTTGGTTTTGGTTTAATGGGGTTTTTAGATATTTAGAAATTATAACCATATGTATCAATATAGTCCCTCACATTATGGATATTGCAAAATGATATGTATCAATATAATGCAAAGTTTTGATCAAATTTGTCCCTCTGTTGAATTGCTTCAAGTGTATGTTTGGTTCTGTGTTGACAAGAATTGGTTTTGAGTGATTGATTATGTAAAATTGATTTTGACTTAAATGAGTTGGAGGTAAAGTGATTTGTGTTCGGATACACTCATGTAAAAGTGAGTTGAACTATAAATTTGTGTGTAATCAATTCTAGAATAAAAAACTACGAATCCTCTCTTTAAGTAGAATCAATTCGGCAGGCGAAAGCAACCAAACATGTCAGAATTGCTTCTACACCTCTAGAATCAATTTTAACTGTATTAATTTAGTCTCACATTATAGATATTCCAAAATGAATTTTTGAAAATGCAAAGTTTTAATCAAATTTTCCTCTCCATTTGTATTTGTAGGGACTAGAATGACATTAAGTTGATAAATCGGGGATGAATTTGAAACTAAGTGAATAAGGTCAGAGATACATTTGATAACATGTCTATAGAGAGGGATGGCAGTTTTAGAGATCATTTAAGAATATTGATAATATGAAGACTAAGTTGATAGAACATTCATTAGTAGAACCCTTTAATTTCGAGTACCAACTTGAGTATTTACTCTAAGATGATTTTATCTATCAAATTTTGCACTGCTGAATATTGTTTTTCCCTCTTTTCAGGTGCCTAAAGTTAAGAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCAGCAATACTTGATCTAGCACTGATCACTGGGCAGAGACCTGTTAAGACTCGGGCGAGGAATTCCGTTGCCACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTCAGAGGAAAAGTGAGTGCTTCGTATTCAATTGATATTGCCTTGCCTAGTGAATATATTTTGTTAACATGAGATCATTATTTAGTTTAATTGCTTGACATTTTCCCATTTTTTATACTATTTAGTATTTAGAACAATGTCGGTATCATGAATAATGATATTGTTAGATTCTAGTTAATTTGCTGGTATAGTTAGATGCATTGGTGTAATGAACTCTGATAAGCGCTGAGGCGCTTCAAGGAGACTACTCCAAGTAGGGATGGGAATAGGCCAGACCGGCCTACAGGGGCCTACGGCCTAGCCTACGACAGGCCAGGCCAGGCTTTTTTCTTAAATAGAGAAGGCCTAGGCTTTTTTTAAAGCCTATTTAGCTTAAAAGGCCAGGCCATAGGCCTCTCAAAAAGCCTCTTAAGCCTATTAGGCCGGCCTATTTAAGTAATATGAATAATATTATTTATTATTATATTATATTTTGTACTTTGAATTAAAATATAAATTTGTAAACTTGTTCAATAATTTAAGCTTTATTAGTATACATTAGTTTTTTGCATATATAAATGTATTATTATAAACTAGAATAGAAATATGATACAATATATAGTCGAATTCCCAAAAACCTCGTGTTGATTATCAAAAGAGAGTTTAATCTAATTGAACTATTAGTTTGTTAGTCCATTTAAACTTAGATCACATTGCTTATTTAAAGATGTTCATAAGATATAGGCTTTTAAACAGGCTAGCAGGCCGTATCAGGCTTTCAGAAGGTCAGGCTCAGGCCTAAAAAGTAGGCCTATGACAGGCCGCAGACCAGGCTTAGGCTTCAGAAAAATATGGTAGGCCAGGCTTAGGCCTTGCAAAGCCTAGCTCGGCCTAGCCTATTCCCATCCCTAACTCCAAGACATTTGGCTACTGTTTGTTAACTTGTGTAGTATAATGCATCTTTGGATCACATGTAAGCTTTTTGGAGTTGGGAATATTCTCTGTTGACATAATATATGCTTTCCAATGATCAAATATTATTTTGTAATAGAAAGTGTTTACATAGGAAGCATTATTTCCCACATACCAAAACAAAGCGTGTAAAATGATTCTCTTTTATCTTGAGAATGGTACTTCAGAAGTCAAAAGTTTAGTTAATTTGAATTTTCTTCTGCGTATGTGTTTTTCAACAATTTATTTGAATATGTTGTCATTTGGAACTTTTTAAAAAAAATATTGTTAAGTATATTATAGTTCTACAGCGAGTACCAAATTATAGTATTTTGCATTACTTTAGCCTCATATTCTAACACAGGATGTTTAATATCGGTTAGCGGCTGTGGTTTCTTCGCGATCTTTGAGATTGCGGAAAATTGAGGTCAAACACGGTTGTGGAGACATCACATAAAAAACCTGGATGTTGCGGCCACAGCCACGGTCTGCAGACCATATTTTAAAACCATAAAGAATATATTATACATGCTTTGCAACTTTCTTTGTTTTTATATAGCCGAACCCAAAATCTAATACCTATTGGTTGATATTCGACAGATAATGTACTCATTCCTAGACCGCGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTTTGAATATCAGCAGCTTTGATGGGAATGGGAATTACAACATTGGTATTAAGGACCAAACTGTGTTCCCAGAGCTAAAATCTGGTATAGGTACACCTAGAGGAATGGATATCTGCATCTCAACAACCGCTAGAACTGATCAAGAAGGACAAAAATTATTGGCTCTCATGGGTATGCCCTTCAGAGAGGGAGTTGAAGTTACCCAAGTAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATCCAAAATCAAAGGGTAGAGGAGACAGAGCAAAGAAGTAA

Protein sequence

>MS.gene058660.t1

MATTPSLLHSSASSFLSQFRAFPTQFSSSSLFSHGNNRLVSVKADASGAVLVEKSEAEKVYRLKTTYNEKIVPLLMEEFSYTNIHQVPKVKKIVVNCGIGEAAQNAKGLDAAILDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGLNISSFDGNGNYNIGIKDQTVFPELKSGIGTPRGMDICISTTARTDQEGQKLLALMGMPFREGVEVTQVVRKKKLKSHHFDPKSKGRGDRAKK