AlfalfaGEDB | MS.gene069085

M. sativa cultivar XinJiangDaYe / MS.gene069085

KEGG: K03124
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006355 GO:0008134 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0017025 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031326 GO:0034622 GO:0043933 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0070897 GO:0071824 GO:0071840 GO:0080090 GO:0140296 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00382.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069085.t1	XP_003611972.1	97.1	487	14	0	1	487	1	487	3.60E-257	897.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069085.t1	O23215	72.8	437	101	7	1	428	1	428	8.8e-164	578.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069085.t1	G7KC98	97.1	487	14	0	1	487	1	487	2.6e-257	897.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05904	MS.gene069085	0.811498	6.79E-51	-1.69E-46
MS.gene059872	MS.gene069085	0.807755	4.33E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069085.t1	MTR_5g019910	98.152	487	9	0	1	487	1	487	0.0	987
MS.gene069085.t1	MTR_7g091230	34.184	196	121	4	134	323	108	301	5.35e-21	94.0
MS.gene069085.t1	MTR_3g040300	33.333	195	121	4	136	323	66	258	4.74e-20	90.5
MS.gene069085.t1	MTR_3g037190	32.653	196	124	4	134	323	108	301	1.47e-19	89.7
MS.gene069085.t1	MTR_1g053065	28.339	307	184	12	23	323	24	300	1.56e-19	89.7
MS.gene069085.t1	MTR_3g040150	32.243	214	131	6	117	323	90	296	5.26e-19	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069085.t1	AT4G36650	87.240	337	36	3	1	334	1	333	0.0	587
MS.gene069085.t1	AT4G36650	73.600	375	79	6	1	363	1	367	0.0	521
MS.gene069085.t1	AT2G41630	35.678	199	117	5	132	323	106	300	1.07e-23	101
MS.gene069085.t1	AT3G10330	34.328	201	113	6	134	323	108	300	2.81e-21	94.7

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Find 134 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAGGGAAGATTGA+AGG	0.535379	5.3:-11367228	None:intergenic
AAAGCGGTTATGAAGCCCGT+GGG	0.662090	5.3:-11367172	None:intergenic
AACAAACCTAATGAGGCCGA+AGG	0.665876	5.3:+11370106	MS.gene069085:CDS
AACAGCTGGGGTGTAATTAG+AGG	0.420498	5.3:-11369963	None:intergenic
AACTAAGGTTGATGCTATAG+AGG	0.490167	5.3:+11370039	MS.gene069085:CDS
AAGCAGGAGGACTGTAAAGT+TGG	0.489113	5.3:-11370336	None:intergenic
AAGGTATCCCGAAAAGGAGA+GGG	0.619065	5.3:-11367239	None:intergenic
AATATAACCTGAAGGGTTCT+AGG	0.270602	5.3:-11367505	None:intergenic
AATGTGGCACAAAAGGAAAT+CGG	0.414393	5.3:+11369186	MS.gene069085:CDS
AATTTCAATTGCCGCCAATG+TGG	0.648364	5.3:+11369170	MS.gene069085:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAAGCAGCGATAAAT+AGG	-	chr5.3:11368674-11368693	None:intergenic	30.0%
AAGGTTAGAATATAACCTGA+AGG	-	chr5.3:11367516-11367535	None:intergenic	30.0%
AAGTTTAACCAATTGAAAGG+AGG	-	chr5.3:11367545-11367564	None:intergenic	30.0%
AGATTTATTGAGCTGAAGAA+GGG	-	chr5.3:11369301-11369320	None:intergenic	30.0%
AGGTTAGAATATAACCTGAA+GGG	-	chr5.3:11367515-11367534	None:intergenic	30.0%
ATTAGAAACGATCCATGATA+TGG	-	chr5.3:11368208-11368227	None:intergenic	30.0%
CAAATACAAAAGTCTGAGAA+TGG	+	chr5.3:11369707-11369726	MS.gene069085:intron	30.0%
CACATACTAGCTAATATGTT+CGG	-	chr5.3:11367664-11367683	None:intergenic	30.0%
CCTAAGTTTAACCAATTGAA+AGG	-	chr5.3:11367548-11367567	None:intergenic	30.0%
CCTTTCAATTGGTTAAACTT+AGG	+	chr5.3:11367545-11367564	MS.gene069085:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	11366935	11370468	11366935	ID=MS.gene069085
chr5.3	mRNA	11366935	11370468	11366935	ID=MS.gene069085.t1;Parent=MS.gene069085
chr5.3	exon	11366935	11367519	11366935	ID=MS.gene069085.t1.exon1;Parent=MS.gene069085.t1
chr5.3	CDS	11366935	11367519	11366935	ID=cds.MS.gene069085.t1;Parent=MS.gene069085.t1
chr5.3	exon	11369168	11369326	11369168	ID=MS.gene069085.t1.exon2;Parent=MS.gene069085.t1
chr5.3	CDS	11369168	11369326	11369168	ID=cds.MS.gene069085.t1;Parent=MS.gene069085.t1
chr5.3	exon	11369749	11370468	11369749	ID=MS.gene069085.t1.exon3;Parent=MS.gene069085.t1
chr5.3	CDS	11369749	11370468	11369749	ID=cds.MS.gene069085.t1;Parent=MS.gene069085.t1

Gene Sequence

>MS.gene069085

ATGAAGTGCCCATACTGTTCAGCGGCGCAAGGCCGTTGCACAACAACAACCACCGGAAAATCAATCACAGAATGCACATCATGCGGCCGCGTCGTAGAAGAAAGACAATCCCATCCTCACCACATCTTCCACCTGCGCGCCCAAGATAATCCCCTATGTCTCGTCACACCAGATCTCCCTCCCCCCACTCTCAACCAAACCAACACCGAAACCAACGAAGAAGAAGACCCATTCGAGCCCACGGGCTTCATAACCGCTTTCTCAACATGGTCCTTAGAGCCCAGCCCGCTTTACCTTCAATCTTCCCTCTCCTTTTCGGGATACCTTGCGGAACTTGAACGTACTCTTGAATCATCTTCTACGAATTCTTCATCGAGTGTTGTTGTTGATAATCTTAGGGCTTATATGCAGATTATAGATGTTTCGTCGATACTTGGATTGGATTGTGATATTTCTGATCATGCTTTTCAGTTGTTTAGGGATTGTTGTTCTGCTACTTGTTTGAGAAATCGGAGTGTTGAAGCTCTTGCTACTGCTGCTCTTGTTCAGGCTATTCGTGAAGCTCAAGAACCTAGAACCCTTCAGGTTATATTCTAACCTTTTTTTTCCTCCTTTCAATTGGTTAAACTTAGGATAAATAGCTTAATTAAACGCATATAGCATAAACATTTATCATATAAGTTATAAGCTGTTTTCATAAACACCTGTCTAGCTTGTAGAATTAAGCCGAACATATTAGCTAGTATGTGATTTTCGTTAGGAAAATATGCAGCAAACTTTAAAGCTACGAATATGTAAACAACCTAAAGATGATAAATGTGATTGATTGAAATGAAAATGCTGTGTTCACATTAACACTTGAGTAGAGCGCAAAAGATGAAGAGTTGTGAGTTGAACTTGTAACTCTCAAGCCAAAGGATTCAAAGAGTAGTGTGTTTAGATCTTAGGCAAGCCACATTGAACTTATCTTTAAACATCAGGACTGGGCAACTTTTTTTTGTTAAAAGCTGAATTGGATACCTATAATAAGTATCAGGGAAGCATCCAAAGTATCGGCATTAGATACGAGGAATGTATTTAATTTTTTTTTGACAAAGAGGAATGTATTTGATATGATGTAAGCATTGGTGCTTCATAGAATAAATGTGAACTCATTCTTCTGTGGTCCACTTCTAGGGATTTATGAAGTATCATCTACCCCAACTATGTAGACGAGCAGCATTTGAAACTAAATCTGCGCGTAGTTTATAAAAATAGTAAAATACCATTACCATATCATGGATCGTTTCTAATAGTCTAATATTGCAAATGGCTTTCAAAATTGTGATCTTATTTACTAATAAGATCATATTATTTTATGATCTTTGTAGCCCCTTGCAATCCATATCTCAGTCTTGTAAGTGATTTAGTTGGATCACAGTGTCTGCACGTAGAATCGTTAATATTGGACAATTTTTCGGCAATCCTAGGGCTCGATCACCACTCGGTTTCTTGGATTAGGTTTTGCGACCCAGTTACTAAAAAGCTTATTTTTGTCTATGAAAATGGAATCCCTTGCCGAATTATGAGCATTCATTCAACCAAACATATTTCTCCTTGCTGTCTCCCTTCTCATGCATCTCTCTCTTGATTCTAAGCCTCCTCTGTTGCACGCATTTCCTTTATCTGACACACTCTCCCTTTTCTCTTCTCCTACTTGGTGTTCTCTCTGACATGCATATCTGCCTTTCTATTTACCTATTTATCGCTGCTTAGTTTTACAGTTGTTGTACTTGTTTGTTACTACTTTAGCTTAAGTTCTTAATTATGAGTTGTGTATGACCTTAAGGATTTTGAATTTCAGTTTGCTGAAGTGTTTTTTGTGATGGATTTTTTTTTCTTCTTTTTTATGCACATGTATGGATTTATATATACACTAATTACAATCCAATGATTTATATAACCTATGCCCTGCCTTCATTTCCTCTATTATTTATATTCAGCATTTTTTTTTTTAGTATAATTGTCTTATTTCAATTGCTATGCGGCTTCTGTTATTTGCCCGCACCACTATCTGCTATTTCATATAGCAGATTTTTGGCATTCTGCTGATTTCCACAATTTGCTATTGATAATACTTTGGATCTTACAATTCATGTTAGGATCCCAAAATTTACAGGCTTTTCTCCCCTTTGTGATCCCAAGTAAAATCTCGATATTGACTACCGTATTTGTAACTCTTGTGAAATGACAGGAAATTTCAATTGCCGCCAATGTGGCACAAAAGGAAATCGGGAAATACATCAAGATACTGGGAGAAGCTTTGCAGCTAAGTCAACCTATTAACAGCAATTCTATATCAGTTCATATGCCAAGATTTTGCACCCTTCTTCAGCTCAATAAATCTGCTCAGGTACCTGGAATTGCACCAAAATGTGACTTCTAGAGTTAACCTTATTTCGTTTGAAAATCTTGAAACGGTTGCAATGTGTCCATAAAGTAAAAACAGAATCTGTGAATCATGCCATGATACAATTAGTAATAGATTTTGTATAAACACTTCTCTATGATTTTTCTATTGGGGCACCGCATATCTGCTCTGCTTTTACAAGGTTCTGAATTTTCTATTGCTGTCTTTGTTCTTTTCTCAACCAAAGGGTTGTGTAATGGACAATCAGTTAGACCTGGCTGGCTGGATGTCCAATGATCACTTTGTGGTAGTGAATTTGCAATATATTCTCCCTAAAATAACTTTTCTTAGGGTGCTTTCTTTTACTCTGTTCCTTTATATTACAAATACAAAAGTCTGAGAATGGCTCCTACATTGCATTTCAGGAACTGGCTACTCACATAGGAGACGTTGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCAATTAGCATCTCAGCTGCCGCCATATATTTGGCTTGCCAACTAGAAGACAAACGCAAAACCCAGGCCGAAATTTGCAAAGTAACTGGTCTAACTGAAGTCACTCTCCGTAAAGTGTATAAAGAATTACTGGAGAATTGGGATGATTTACTTCCCTCTAATTACACCCCAGCTGTTCCTCCGGAGCGGGCATTTCCCACAACCTTAATTGCTTCTGGACGTTCTTCAACAACTAAGGTTGATGCTATAGAGGTTACTTCTTCTTTGGATTCAGAAAATTTGCCGGAATTTAAACCAAACAAACCTAATGAGGCCGAAGGTAAAAGTAATGCTCGTGCAAGCCAATCATCGGCTATTCAGCAGTCAACGTTTTGGCAATCCCAACTTCCCAGTGCGACCCAAAATCATCAAAATCCGAATGTTTTAGATTCAATGGATATTGATGGGTTGCAGCGCAACCACCAACAACCTGAACCCATGGTAGAGGTCACAAATGGTGCTGGTATCGGTAGTTCTCTAAACTCCAACCAACTTTACAGTCCTCCTGCTTCAAGTTCAAGCTCTGTTATGAGGTCGCTTTCGGCTCCTCCTTCATCTGCTCCTCCAAATATTCGACACTTGCAATCGTCTAAGACAATGCCTGGTTTTCCAGAATACTGA

Protein sequence

>MS.gene069085.t1

MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLPPPTLNQTNTETNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTLESSSTNSSSSVVVDNLRAYMQIIDVSSILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGRSSTTKVDAIEVTSSLDSENLPEFKPNKPNEAEGKSNARASQSSAIQQSTFWQSQLPSATQNHQNPNVLDSMDIDGLQRNHQQPEPMVEVTNGAGIGSSLNSNQLYSPPASSSSSVMRSLSAPPSSAPPNIRHLQSSKTMPGFPEY