Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069307.t1 | AFK37847.1 | 84.1 | 396 | 47 | 6 | 1 | 382 | 1 | 394 | 3.40E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069307.t1 | I3SC55 | 84.1 | 396 | 47 | 6 | 1 | 382 | 1 | 394 | 2.5e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054554 | MS.gene069307 | 0.804042 | 2.61E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene069307 | 0.834528 | 2.85E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069307.t1 | MTR_3g013540 | 87.597 | 387 | 32 | 6 | 10 | 382 | 10 | 394 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069307.t1 | AT4G28230 | 34.590 | 451 | 169 | 16 | 1 | 374 | 1 | 402 | 3.86e-44 | 157 |
Find 90 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATAGCGGCGAAGTTTA+TGG | 0.231845 | 3.3:-8479966 | MS.gene069307:CDS |
| TCGGAGAATAATAAGGGTTT+AGG | 0.238572 | 3.3:-8479419 | MS.gene069307:CDS |
| CGCCGAAATCTAGGGTTAAT+TGG | 0.254719 | 3.3:-8479856 | MS.gene069307:CDS |
| ATCGGAGGAAGTCTTGTTTC+TGG | 0.261254 | 3.3:-8479748 | MS.gene069307:CDS |
| GTTGTTGTTTATGTTGTTCA+TGG | 0.293592 | 3.3:+8480270 | None:intergenic |
| CGGAGAATAATAAGGGTTTA+GGG | 0.320706 | 3.3:-8479418 | MS.gene069307:CDS |
| TTTCAGATACGCCGAAATCT+AGG | 0.331896 | 3.3:-8479865 | MS.gene069307:CDS |
| CTCCAATTAACCCTAGATTT+CGG | 0.345035 | 3.3:+8479854 | None:intergenic |
| ACTGAATTTGAATTCAAATT+CGG | 0.356555 | 3.3:+8479599 | None:intergenic |
| TGGAGAAGAGGGATGAGTTT+AGG | 0.361418 | 3.3:-8479836 | MS.gene069307:CDS |
| GAAAGGCGCGTTAGTGGAAT+TGG | 0.373264 | 3.3:-8479998 | MS.gene069307:CDS |
| GATGAGAGTCCTAGAGATTC+TGG | 0.380311 | 3.3:-8479296 | MS.gene069307:CDS |
| GAAACGACACCGTTTCGTTT+CGG | 0.393730 | 3.3:+8479884 | None:intergenic |
| CGGCGGAACCATCACTTTCC+CGG | 0.395175 | 3.3:+8479799 | None:intergenic |
| CTCACATCAACTTCTTCAAT+TGG | 0.396715 | 3.3:+8479362 | None:intergenic |
| AGGGTTTAGGGAGTGAAATT+AGG | 0.397910 | 3.3:-8479406 | MS.gene069307:CDS |
| GTTGCAAGCCGGTATAATTC+CGG | 0.410204 | 3.3:-8479467 | MS.gene069307:CDS |
| GCTTCTGAAAGGCGCGTTAG+TGG | 0.411687 | 3.3:-8480004 | MS.gene069307:CDS |
| TCACCTTCAAACAGTTTCTT+CGG | 0.412912 | 3.3:+8479527 | None:intergenic |
| AGAAGGTGGTACTGTTTGTC+AGG | 0.429424 | 3.3:-8479186 | MS.gene069307:CDS |
| CGCGTTAGTGGAATTGGTAC+TGG | 0.430435 | 3.3:-8479992 | MS.gene069307:CDS |
| AAAACGACGCCGTTTCGCTT+CGG | 0.444475 | 3.3:+8479920 | None:intergenic |
| AACCTCATCGTCGAAATCTT+CGG | 0.449800 | 3.3:+8479323 | None:intergenic |
| GACACAACATTGAGCAAGGT+TGG | 0.449844 | 3.3:+8480139 | None:intergenic |
| ATTCAGTTAATTCTGTGGTT+CGG | 0.467626 | 3.3:-8479583 | MS.gene069307:CDS |
| TTAGGTCCGATGGAGATTGC+CGG | 0.468836 | 3.3:-8479818 | MS.gene069307:CDS |
| TAAGCGATTAACTTCGAAGC+TGG | 0.468919 | 3.3:-8480062 | MS.gene069307:CDS |
| ACACAACATTGAGCAAGGTT+GGG | 0.478469 | 3.3:+8480140 | None:intergenic |
| TTCAGATACGCCGAAATCTA+GGG | 0.483902 | 3.3:-8479864 | MS.gene069307:CDS |
| TTACTCCGGCGACGGTGAAT+CGG | 0.497391 | 3.3:-8479766 | MS.gene069307:CDS |
| TTCCGCGATTTCGTCGTCGA+TGG | 0.499149 | 3.3:+8480099 | None:intergenic |
| GAAAGATGAAGTAATTGCTC+AGG | 0.500816 | 3.3:-8479555 | MS.gene069307:CDS |
| AGAGTGATGGTGGAGGAAGA+AGG | 0.504758 | 3.3:-8479203 | MS.gene069307:CDS |
| GTTACTACACCGAAGCGAAA+CGG | 0.507502 | 3.3:-8479929 | MS.gene069307:CDS |
| TTACTCCGGCGACGGTGAAT+CGG | 0.508232 | 3.3:-8479688 | MS.gene069307:CDS |
| AGTGATGGTTCCGCCGGTGA+TGG | 0.510571 | 3.3:-8479792 | MS.gene069307:CDS |
| TAGGTCCGATGGAGATTGCC+GGG | 0.510662 | 3.3:-8479817 | MS.gene069307:CDS |
| AAAAGAGTTGCTGAATTGAA+TGG | 0.514731 | 3.3:-8479266 | MS.gene069307:CDS |
| GAGGAGACACCGAAACGAAA+CGG | 0.522863 | 3.3:-8479893 | MS.gene069307:CDS |
| TTCCTCCGATTCACCGTCGC+CGG | 0.523310 | 3.3:+8479683 | None:intergenic |
| TTCAAATTCAGTTAATTCTG+TGG | 0.526423 | 3.3:-8479588 | MS.gene069307:CDS |
| CTAGGGTTAATTGGAGAAGA+GGG | 0.531954 | 3.3:-8479847 | MS.gene069307:CDS |
| AAATTAGGTCTAAGAAAAGG+TGG | 0.535216 | 3.3:-8479391 | MS.gene069307:CDS |
| AGGGATGAGTTTAGGTCCGA+TGG | 0.546332 | 3.3:-8479828 | MS.gene069307:CDS |
| TTCCTCCGATTCACCGTCGC+CGG | 0.547366 | 3.3:+8479761 | None:intergenic |
| CAACCGAAGAAACTGTTTGA+AGG | 0.547501 | 3.3:-8479530 | MS.gene069307:CDS |
| GTGAAATTAGGTCTAAGAAA+AGG | 0.550572 | 3.3:-8479394 | MS.gene069307:CDS |
| TCTAGGGTTAATTGGAGAAG+AGG | 0.552887 | 3.3:-8479848 | MS.gene069307:CDS |
| GATCACCACCGGAATTATAC+CGG | 0.555656 | 3.3:+8479459 | None:intergenic |
| AGTGTTGAAGTTATACCGCC+GGG | 0.561502 | 3.3:-8479713 | MS.gene069307:CDS |
| AAGTGTTGAAGTTATACCGC+CGG | 0.562352 | 3.3:-8479714 | MS.gene069307:CDS |
| GCCGGAGTAATCGCCATCAC+CGG | 0.562464 | 3.3:+8479779 | None:intergenic |
| GATGATGATGATGGTGAACA+AGG | 0.569890 | 3.3:-8479146 | MS.gene069307:CDS |
| GTTCCACACTTGAACTTGTG+TGG | 0.572034 | 3.3:+8480231 | None:intergenic |
| GCCGGGGATTACTCCGGCGA+CGG | 0.573422 | 3.3:-8479696 | MS.gene069307:CDS |
| GCCGGTGATGGCGATTACTC+CGG | 0.574754 | 3.3:-8479780 | MS.gene069307:CDS |
| ACTTTCCCGGCAATCTCCAT+CGG | 0.575413 | 3.3:+8479812 | None:intergenic |
| AACCATCGACGACGAAATCG+CGG | 0.578306 | 3.3:-8480101 | MS.gene069307:CDS |
| TTTGCTGAAGATGATGATGA+TGG | 0.578333 | 3.3:-8479155 | MS.gene069307:CDS |
| TGATGAGGAGAGAGTGATGG+TGG | 0.578472 | 3.3:-8479213 | MS.gene069307:CDS |
| ACCGTCGCCGGAGTAATCCC+CGG | 0.582081 | 3.3:+8479695 | None:intergenic |
| GCGATTAACTTCGAAGCTGG+AGG | 0.584497 | 3.3:-8480059 | MS.gene069307:CDS |
| TTCGCAGCACCAGAATCTCT+AGG | 0.586867 | 3.3:+8479287 | None:intergenic |
| CGGGAAAGTGATGGTTCCGC+CGG | 0.589546 | 3.3:-8479798 | MS.gene069307:CDS |
| TTGTGATGAAGATGATGATG+AGG | 0.593857 | 3.3:-8479228 | MS.gene069307:CDS |
| TGAGGAGAGAGTGATGGTGG+AGG | 0.595926 | 3.3:-8479210 | MS.gene069307:CDS |
| AAGGTAGAATTGTTGCAAGC+CGG | 0.596788 | 3.3:-8479478 | MS.gene069307:CDS |
| CTCCGGCGACGGTGAATCGG+AGG | 0.603994 | 3.3:-8479685 | MS.gene069307:CDS |
| CTCCGGCGACGGTGAATCGG+AGG | 0.603994 | 3.3:-8479763 | MS.gene069307:CDS |
| GGAGATTGCCGGGAAAGTGA+TGG | 0.608773 | 3.3:-8479807 | MS.gene069307:CDS |
| ATAATTCCGGTGGTGATCCG+AGG | 0.609145 | 3.3:-8479454 | MS.gene069307:CDS |
| TGGAACAACGCTGCATTCGA+CGG | 0.613746 | 3.3:-8480214 | MS.gene069307:CDS |
| AATTAGGTCTAAGAAAAGGT+GGG | 0.619997 | 3.3:-8479390 | MS.gene069307:CDS |
| GATGGCGATTACTCCGGCGA+CGG | 0.621049 | 3.3:-8479774 | MS.gene069307:CDS |
| GTGATGGTGGAGGAAGAAGG+TGG | 0.621401 | 3.3:-8479200 | MS.gene069307:CDS |
| ATTCCACACAAGTTCAAGTG+TGG | 0.622649 | 3.3:-8480234 | MS.gene069307:CDS |
| TATACCGCCGGGGATTACTC+CGG | 0.626435 | 3.3:-8479702 | MS.gene069307:CDS |
| AGAAGACACAACATTGAGCA+AGG | 0.630038 | 3.3:+8480135 | None:intergenic |
| TGATGATGAGGAGAGAGTGA+TGG | 0.631512 | 3.3:-8479216 | MS.gene069307:CDS |
| TACCGAAGATTTCGACGATG+AGG | 0.634952 | 3.3:-8479325 | MS.gene069307:CDS |
| ATTGAAGAAGTTGATGTGAG+TGG | 0.635732 | 3.3:-8479359 | MS.gene069307:CDS |
| GTCTTGTTTCTGGAAACCGC+AGG | 0.638565 | 3.3:-8479738 | MS.gene069307:CDS |
| GTGAAGAAATCGTTGAAACA+AGG | 0.639441 | 3.3:-8479497 | MS.gene069307:CDS |
| GGAGTAATCGCCATCACCGG+CGG | 0.639706 | 3.3:+8479782 | None:intergenic |
| GCAAGCCGGTATAATTCCGG+TGG | 0.669216 | 3.3:-8479464 | MS.gene069307:CDS |
| ATAACTTCAACACTTTCCTG+CGG | 0.677868 | 3.3:+8479722 | None:intergenic |
| ATGATGATGATGGTGAACAA+GGG | 0.680940 | 3.3:-8479145 | MS.gene069307:CDS |
| TGGTACTGGAAGAATAATAG+CGG | 0.700889 | 3.3:-8479978 | MS.gene069307:CDS |
| GTGTTGAAGTTATACCGCCG+GGG | 0.738793 | 3.3:-8479712 | MS.gene069307:CDS |
| GTCGCCGGAGTAATCCCCGG+CGG | 0.767884 | 3.3:+8479698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTGAATTTGAATTCAAATT+CGG | + | chr3.3:8479814-8479833 | None:intergenic | 20.0% |
| ! | TTCAAATTCAGTTAATTCTG+TGG | - | chr3.3:8479822-8479841 | MS.gene069307:CDS | 25.0% |
| AAAAGAGTTGCTGAATTGAA+TGG | - | chr3.3:8480144-8480163 | MS.gene069307:CDS | 30.0% | |
| AAAGAAAAATCGCTTCTGAA+AGG | - | chr3.3:8479395-8479414 | MS.gene069307:CDS | 30.0% | |
| AAATTAGGTCTAAGAAAAGG+TGG | - | chr3.3:8480019-8480038 | MS.gene069307:CDS | 30.0% | |
| AATTAGGTCTAAGAAAAGGT+GGG | - | chr3.3:8480020-8480039 | MS.gene069307:CDS | 30.0% | |
| ACTGTTTGAAGGTGAAAAAT+CGG | - | chr3.3:8479891-8479910 | MS.gene069307:CDS | 30.0% | |
| ATTCAGTTAATTCTGTGGTT+CGG | - | chr3.3:8479827-8479846 | MS.gene069307:CDS | 30.0% | |
| GTGAAATTAGGTCTAAGAAA+AGG | - | chr3.3:8480016-8480035 | MS.gene069307:CDS | 30.0% | |
| ! | ATCGTTTTCGGAGAATAATA+AGG | - | chr3.3:8479984-8480003 | MS.gene069307:CDS | 30.0% |
| ! | GGTGTAGTAACATTTTTCTT+CGG | + | chr3.3:8479472-8479491 | None:intergenic | 30.0% |
| ! | TCGTTTTCGGAGAATAATAA+GGG | - | chr3.3:8479985-8480004 | MS.gene069307:CDS | 30.0% |
| ! | TTTTCTTCACAACTTTCTTG+CGG | + | chr3.3:8479769-8479788 | None:intergenic | 30.0% |
| AATAATAGCGGCGAAGTTTA+TGG | - | chr3.3:8479444-8479463 | MS.gene069307:CDS | 35.0% | |
| ATAACTTCAACACTTTCCTG+CGG | + | chr3.3:8479691-8479710 | None:intergenic | 35.0% | |
| CGGAGAATAATAAGGGTTTA+GGG | - | chr3.3:8479992-8480011 | MS.gene069307:CDS | 35.0% | |
| CTCACATCAACTTCTTCAAT+TGG | + | chr3.3:8480051-8480070 | None:intergenic | 35.0% | |
| CTCCAATTAACCCTAGATTT+CGG | + | chr3.3:8479559-8479578 | None:intergenic | 35.0% | |
| GAAAGATGAAGTAATTGCTC+AGG | - | chr3.3:8479855-8479874 | MS.gene069307:CDS | 35.0% | |
| GTGAAGAAATCGTTGAAACA+AGG | - | chr3.3:8479913-8479932 | MS.gene069307:CDS | 35.0% | |
| TCACCTTCAAACAGTTTCTT+CGG | + | chr3.3:8479886-8479905 | None:intergenic | 35.0% | |
| TCGGAGAATAATAAGGGTTT+AGG | - | chr3.3:8479991-8480010 | MS.gene069307:CDS | 35.0% | |
| ! | TGGTACTGGAAGAATAATAG+CGG | - | chr3.3:8479432-8479451 | MS.gene069307:CDS | 35.0% |
| ! | TTGTGATGAAGATGATGATG+AGG | - | chr3.3:8480182-8480201 | MS.gene069307:CDS | 35.0% |
| ! | TTTGCTGAAGATGATGATGA+TGG | - | chr3.3:8480255-8480274 | MS.gene069307:CDS | 35.0% |
| !! | ATGATGATGATGGTGAACAA+GGG | - | chr3.3:8480265-8480284 | MS.gene069307:CDS | 35.0% |
| !! | ATTGAAGAAGTTGATGTGAG+TGG | - | chr3.3:8480051-8480070 | MS.gene069307:CDS | 35.0% |
| AACCTCATCGTCGAAATCTT+CGG | + | chr3.3:8480090-8480109 | None:intergenic | 40.0% | |
| AAGGTAGAATTGTTGCAAGC+CGG | - | chr3.3:8479932-8479951 | MS.gene069307:CDS | 40.0% | |
| ACACAACATTGAGCAAGGTT+GGG | + | chr3.3:8479273-8479292 | None:intergenic | 40.0% | |
| AGAAGACACAACATTGAGCA+AGG | + | chr3.3:8479278-8479297 | None:intergenic | 40.0% | |
| AGGGTTTAGGGAGTGAAATT+AGG | - | chr3.3:8480004-8480023 | MS.gene069307:CDS | 40.0% | |
| ATTCCACACAAGTTCAAGTG+TGG | - | chr3.3:8479176-8479195 | MS.gene069307:CDS | 40.0% | |
| CAACCGAAGAAACTGTTTGA+AGG | - | chr3.3:8479880-8479899 | MS.gene069307:CDS | 40.0% | |
| CTAGGGTTAATTGGAGAAGA+GGG | - | chr3.3:8479563-8479582 | MS.gene069307:CDS | 40.0% | |
| TAAGCGATTAACTTCGAAGC+TGG | - | chr3.3:8479348-8479367 | MS.gene069307:CDS | 40.0% | |
| TTCAGATACGCCGAAATCTA+GGG | - | chr3.3:8479546-8479565 | MS.gene069307:CDS | 40.0% | |
| TTTCAGATACGCCGAAATCT+AGG | - | chr3.3:8479545-8479564 | MS.gene069307:CDS | 40.0% | |
| ! | TCCGAAAACGATCTTTTCCT+CGG | + | chr3.3:8479976-8479995 | None:intergenic | 40.0% |
| ! | TCCGAGGAAAAGATCGTTTT+CGG | - | chr3.3:8479972-8479991 | MS.gene069307:CDS | 40.0% |
| ! | TCTAGGGTTAATTGGAGAAG+AGG | - | chr3.3:8479562-8479581 | MS.gene069307:CDS | 40.0% |
| !! | AAGTGTTGAAGTTATACCGC+CGG | - | chr3.3:8479696-8479715 | MS.gene069307:CDS | 40.0% |
| !! | GATGATGATGATGGTGAACA+AGG | - | chr3.3:8480264-8480283 | MS.gene069307:CDS | 40.0% |
| AGAAGGTGGTACTGTTTGTC+AGG | - | chr3.3:8480224-8480243 | MS.gene069307:CDS | 45.0% | |
| GAAACGACACCGTTTCGTTT+CGG | + | chr3.3:8479529-8479548 | None:intergenic | 45.0% | |
| GACACAACATTGAGCAAGGT+TGG | + | chr3.3:8479274-8479293 | None:intergenic | 45.0% | |
| GATCACCACCGGAATTATAC+CGG | + | chr3.3:8479954-8479973 | None:intergenic | 45.0% | |
| GATGAGAGTCCTAGAGATTC+TGG | - | chr3.3:8480114-8480133 | MS.gene069307:CDS | 45.0% | |
| GTTACTACACCGAAGCGAAA+CGG | - | chr3.3:8479481-8479500 | MS.gene069307:CDS | 45.0% | |
| GTTCCACACTTGAACTTGTG+TGG | + | chr3.3:8479182-8479201 | None:intergenic | 45.0% | |
| GTTGCAAGCCGGTATAATTC+CGG | - | chr3.3:8479943-8479962 | MS.gene069307:CDS | 45.0% | |
| TACCGAAGATTTCGACGATG+AGG | - | chr3.3:8480085-8480104 | MS.gene069307:CDS | 45.0% | |
| TGGAGAAGAGGGATGAGTTT+AGG | - | chr3.3:8479574-8479593 | MS.gene069307:CDS | 45.0% | |
| ! | AGTGTTGAAGTTATACCGCC+GGG | - | chr3.3:8479697-8479716 | MS.gene069307:CDS | 45.0% |
| ! | CGCCGAAATCTAGGGTTAAT+TGG | - | chr3.3:8479554-8479573 | MS.gene069307:CDS | 45.0% |
| ! | TGATGATGAGGAGAGAGTGA+TGG | - | chr3.3:8480194-8480213 | MS.gene069307:CDS | 45.0% |
| !! | ATCGGAGGAAGTCTTGTTTC+TGG | - | chr3.3:8479662-8479681 | MS.gene069307:CDS | 45.0% |
| AAAACGACGCCGTTTCGCTT+CGG | + | chr3.3:8479493-8479512 | None:intergenic | 50.0% | |
| AACCATCGACGACGAAATCG+CGG | - | chr3.3:8479309-8479328 | MS.gene069307:CDS | 50.0% | |
| ACTTTCCCGGCAATCTCCAT+CGG | + | chr3.3:8479601-8479620 | None:intergenic | 50.0% | |
| AGGGATGAGTTTAGGTCCGA+TGG | - | chr3.3:8479582-8479601 | MS.gene069307:CDS | 50.0% | |
| ATAATTCCGGTGGTGATCCG+AGG | - | chr3.3:8479956-8479975 | MS.gene069307:CDS | 50.0% | |
| CGCGTTAGTGGAATTGGTAC+TGG | - | chr3.3:8479418-8479437 | MS.gene069307:CDS | 50.0% | |
| GAGGAGACACCGAAACGAAA+CGG | - | chr3.3:8479517-8479536 | MS.gene069307:CDS | 50.0% | |
| GCGATTAACTTCGAAGCTGG+AGG | - | chr3.3:8479351-8479370 | MS.gene069307:CDS | 50.0% | |
| GTGTTGAAGTTATACCGCCG+GGG | - | chr3.3:8479698-8479717 | MS.gene069307:CDS | 50.0% | |
| TGATGAGGAGAGAGTGATGG+TGG | - | chr3.3:8480197-8480216 | MS.gene069307:CDS | 50.0% | |
| TGGAACAACGCTGCATTCGA+CGG | - | chr3.3:8479196-8479215 | MS.gene069307:CDS | 50.0% | |
| TTAGGTCCGATGGAGATTGC+CGG | - | chr3.3:8479592-8479611 | MS.gene069307:CDS | 50.0% | |
| TTCGCAGCACCAGAATCTCT+AGG | + | chr3.3:8480126-8480145 | None:intergenic | 50.0% | |
| ! | GAAAGGCGCGTTAGTGGAAT+TGG | - | chr3.3:8479412-8479431 | MS.gene069307:CDS | 50.0% |
| ! | TCTTTTCCTCGGATCACCAC+CGG | + | chr3.3:8479965-8479984 | None:intergenic | 50.0% |
| !! | AAACGGCGTCGTTTTCAAGG+AGG | - | chr3.3:8479498-8479517 | MS.gene069307:CDS | 50.0% |
| !! | AGAGTGATGGTGGAGGAAGA+AGG | - | chr3.3:8480207-8480226 | MS.gene069307:CDS | 50.0% |
| !! | GTCTTGTTTCTGGAAACCGC+AGG | - | chr3.3:8479672-8479691 | MS.gene069307:CDS | 50.0% |
| GCAAGCCGGTATAATTCCGG+TGG | - | chr3.3:8479946-8479965 | MS.gene069307:CDS | 55.0% | |
| GGAGATTGCCGGGAAAGTGA+TGG | - | chr3.3:8479603-8479622 | MS.gene069307:CDS | 55.0% | |
| TAGGTCCGATGGAGATTGCC+GGG | - | chr3.3:8479593-8479612 | MS.gene069307:CDS | 55.0% | |
| TATACCGCCGGGGATTACTC+CGG | - | chr3.3:8479708-8479727 | MS.gene069307:CDS | 55.0% | |
| TTACTCCGGCGACGGTGAAT+CGG | - | chr3.3:8479644-8479663 | MS.gene069307:CDS | 55.0% | |
| TTCCGCGATTTCGTCGTCGA+TGG | + | chr3.3:8479314-8479333 | None:intergenic | 55.0% | |
| ! | GCTTCTGAAAGGCGCGTTAG+TGG | - | chr3.3:8479406-8479425 | MS.gene069307:CDS | 55.0% |
| !! | GCGAAACGGCGTCGTTTTCA+AGG | - | chr3.3:8479495-8479514 | MS.gene069307:CDS | 55.0% |
| !! | GTGATGGTGGAGGAAGAAGG+TGG | - | chr3.3:8480210-8480229 | MS.gene069307:CDS | 55.0% |
| !! | TGAGGAGAGAGTGATGGTGG+AGG | - | chr3.3:8480200-8480219 | MS.gene069307:CDS | 55.0% |
| AGTGATGGTTCCGCCGGTGA+TGG | - | chr3.3:8479618-8479637 | MS.gene069307:CDS | 60.0% | |
| CGGCGGAACCATCACTTTCC+CGG | + | chr3.3:8479614-8479633 | None:intergenic | 60.0% | |
| CGGGAAAGTGATGGTTCCGC+CGG | - | chr3.3:8479612-8479631 | MS.gene069307:CDS | 60.0% | |
| GATGGCGATTACTCCGGCGA+CGG | - | chr3.3:8479636-8479655 | MS.gene069307:CDS | 60.0% | |
| GCCGGAGTAATCGCCATCAC+CGG | + | chr3.3:8479634-8479653 | None:intergenic | 60.0% | |
| GGAGTAATCGCCATCACCGG+CGG | + | chr3.3:8479631-8479650 | None:intergenic | 60.0% | |
| TTCCTCCGATTCACCGTCGC+CGG | + | chr3.3:8479652-8479671 | None:intergenic | 60.0% | |
| ! | GCCGGTGATGGCGATTACTC+CGG | - | chr3.3:8479630-8479649 | MS.gene069307:CDS | 60.0% |
| ACCGTCGCCGGAGTAATCCC+CGG | + | chr3.3:8479718-8479737 | None:intergenic | 65.0% | |
| CTCCGGCGACGGTGAATCGG+AGG | - | chr3.3:8479647-8479666 | MS.gene069307:CDS | 70.0% | |
| GCCGGGGATTACTCCGGCGA+CGG | - | chr3.3:8479714-8479733 | MS.gene069307:CDS | 70.0% | |
| GTCGCCGGAGTAATCCCCGG+CGG | + | chr3.3:8479715-8479734 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 8479142 | 8480290 | 8479142 | ID=MS.gene069307 |
| chr3.3 | mRNA | 8479142 | 8480290 | 8479142 | ID=MS.gene069307.t1;Parent=MS.gene069307 |
| chr3.3 | exon | 8479142 | 8480290 | 8479142 | ID=MS.gene069307.t1.exon1;Parent=MS.gene069307.t1 |
| chr3.3 | CDS | 8479142 | 8480290 | 8479142 | ID=cds.MS.gene069307.t1;Parent=MS.gene069307.t1 |
| Gene Sequence |
| Protein sequence |
