Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069706.t1 | RHN52436.1 | 92.2 | 306 | 23 | 1 | 1 | 306 | 576 | 880 | 1.80E-134 | 488.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069706.t1 | A0A072UCM1 | 92.2 | 306 | 23 | 1 | 1 | 306 | 576 | 880 | 1.3e-134 | 488.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052307 | MS.gene069706 | 0.808843 | 2.54E-50 | -1.69E-46 |
MS.gene052609 | MS.gene069706 | 0.81391 | 2.02E-51 | -1.69E-46 |
MS.gene055513 | MS.gene069706 | 0.841114 | 5.78E-58 | -1.69E-46 |
MS.gene056507 | MS.gene069706 | 0.803311 | 3.70E-49 | -1.69E-46 |
MS.gene061100 | MS.gene069706 | 0.808961 | 2.39E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069706.t1 | MTR_6g074905 | 96.405 | 306 | 10 | 1 | 1 | 306 | 576 | 880 | 0.0 | 603 |
MS.gene069706.t1 | MTR_6g074870 | 95.614 | 114 | 4 | 1 | 166 | 279 | 1 | 113 | 1.59e-69 | 220 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069706.t1 | AT1G73450 | 49.839 | 311 | 136 | 6 | 1 | 306 | 528 | 823 | 5.34e-70 | 235 |
MS.gene069706.t1 | AT1G73460 | 47.588 | 311 | 155 | 4 | 1 | 306 | 533 | 840 | 6.70e-66 | 224 |
MS.gene069706.t1 | AT1G73460 | 47.588 | 311 | 155 | 4 | 1 | 306 | 533 | 840 | 6.70e-66 | 224 |
MS.gene069706.t1 | AT3G17750 | 38.264 | 311 | 152 | 6 | 1 | 306 | 534 | 809 | 6.54e-44 | 160 |
Find 72 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTAACCATGGCGACTTAC+TGG | 0.244009 | 6.1:+66241830 | None:intergenic |
TAAAGATAGCCAGATGATTC+AGG | 0.272060 | 6.1:-66241862 | MS.gene069706:CDS |
ATTACAAGGGAAGATGATTT+AGG | 0.302027 | 6.1:-66241573 | MS.gene069706:CDS |
ACCTCCAATGACATATTTAC+TGG | 0.308472 | 6.1:+66241950 | None:intergenic |
CTTCACCCGAGAAAAGTTCT+AGG | 0.316441 | 6.1:-66241716 | MS.gene069706:CDS |
CGAACTACTGTCAATAATTA+CGG | 0.330303 | 6.1:-66241651 | MS.gene069706:CDS |
TGATTTCGGAAAGAATTCTA+TGG | 0.340361 | 6.1:-66242015 | MS.gene069706:CDS |
GTGCACAATCTTTAGATTGA+AGG | 0.352847 | 6.1:+66241470 | None:intergenic |
CACGGTTCAGTTAGGTCAAT+CGG | 0.353249 | 6.1:-66242173 | MS.gene069706:CDS |
CGTGATCGTGATAGTGGACT+TGG | 0.356374 | 6.1:-66242059 | MS.gene069706:CDS |
AAACACTCTCATCATGATTT+CGG | 0.364881 | 6.1:-66242029 | MS.gene069706:CDS |
ATGCACTTCACTGCCGATAT+CGG | 0.378621 | 6.1:+66242127 | None:intergenic |
AACAGTGATGCTGCCGATAT+CGG | 0.384344 | 6.1:-66242140 | MS.gene069706:CDS |
TTCCATCTCCCAACATGATC+AGG | 0.405305 | 6.1:+66242249 | None:intergenic |
TGATGCACGCGGAACCTGTC+TGG | 0.426564 | 6.1:-66242298 | MS.gene069706:CDS |
AAGATCACGACTCGAGGAAA+TGG | 0.430640 | 6.1:-66242207 | MS.gene069706:CDS |
AGAGCAGGTAAGGCAAATAA+AGG | 0.436416 | 6.1:-66241514 | MS.gene069706:CDS |
GAACTACTGTCAATAATTAC+GGG | 0.442671 | 6.1:-66241650 | MS.gene069706:CDS |
ACGGTTCAGTTAGGTCAATC+GGG | 0.463137 | 6.1:-66242172 | MS.gene069706:CDS |
ATGATCAACACGGTTCAGTT+AGG | 0.463977 | 6.1:-66242181 | MS.gene069706:CDS |
TATTTCCGTGATCGTGATAG+TGG | 0.470031 | 6.1:-66242065 | MS.gene069706:CDS |
TTTATTGGTGGTAGTAGTGA+AGG | 0.470139 | 6.1:-66242098 | MS.gene069706:CDS |
CTGCTGTGCAAGAGCAGGTA+AGG | 0.471247 | 6.1:-66241524 | MS.gene069706:CDS |
GGGACAAAGCTCTGCCAGAC+AGG | 0.485890 | 6.1:+66242284 | None:intergenic |
GGTAAGGCAAATAAAGGCTC+AGG | 0.493775 | 6.1:-66241508 | MS.gene069706:CDS |
AACCACCACCCTGAATCATC+TGG | 0.494607 | 6.1:+66241853 | None:intergenic |
TGGTTAAATAATTGTAATGC+GGG | 0.496234 | 6.1:-66241816 | MS.gene069706:CDS |
TCAGTTAGGTCAATCGGGGT+GGG | 0.498477 | 6.1:-66242167 | MS.gene069706:CDS |
ACAAATGACCTGATCATGTT+GGG | 0.499839 | 6.1:-66242257 | MS.gene069706:CDS |
ATGAAGAAGTTGACATTACA+AGG | 0.499940 | 6.1:-66241587 | MS.gene069706:CDS |
GCAAATAAAGGCTCAGGAGG+AGG | 0.504551 | 6.1:-66241502 | MS.gene069706:CDS |
TTATTGGTGGTAGTAGTGAA+GGG | 0.510089 | 6.1:-66242097 | MS.gene069706:CDS |
TTCAGTTAGGTCAATCGGGG+TGG | 0.510316 | 6.1:-66242168 | MS.gene069706:CDS |
CTGATGAAATGCTTTCTTCG+TGG | 0.513180 | 6.1:-66241758 | MS.gene069706:CDS |
GATTGCTGCTGTGCAAGAGC+AGG | 0.514712 | 6.1:-66241529 | MS.gene069706:CDS |
AGAGCATGTCAAGCTAGAAA+AGG | 0.514729 | 6.1:-66241616 | MS.gene069706:CDS |
AAAGATAGCCAGATGATTCA+GGG | 0.519030 | 6.1:-66241861 | MS.gene069706:CDS |
AAAAGCATTCATACAGTCAT+CGG | 0.521280 | 6.1:+66241788 | None:intergenic |
TCAATACGATGGAGAATTGA+TGG | 0.526615 | 6.1:-66242339 | MS.gene069706:CDS |
GTGATCGTGATAGTGGACTT+GGG | 0.535123 | 6.1:-66242058 | MS.gene069706:CDS |
GACAAATGACCTGATCATGT+TGG | 0.535846 | 6.1:-66242258 | MS.gene069706:CDS |
TGATCGTGATAGTGGACTTG+GGG | 0.546159 | 6.1:-66242057 | MS.gene069706:CDS |
GACCTGATCATGTTGGGAGA+TGG | 0.546961 | 6.1:-66242251 | MS.gene069706:CDS |
TATTGGTGGTAGTAGTGAAG+GGG | 0.553085 | 6.1:-66242096 | MS.gene069706:CDS |
GGAAAAGTTCTGAATCATAG+TGG | 0.553356 | 6.1:-66242230 | MS.gene069706:CDS |
TTCACCCGAGAAAAGTTCTA+GGG | 0.553463 | 6.1:-66241715 | MS.gene069706:CDS |
GAGTCCAGTAAATATGTCAT+TGG | 0.556213 | 6.1:-66241954 | MS.gene069706:CDS |
AGCCAGATGATTCAGGGTGG+TGG | 0.560576 | 6.1:-66241855 | MS.gene069706:CDS |
TGATTTAGGTGTTTCACAAG+AGG | 0.562368 | 6.1:-66241559 | MS.gene069706:CDS |
TCCAGTAAATATGTCATTGG+AGG | 0.572803 | 6.1:-66241951 | MS.gene069706:CDS |
GATTTAATGGCTCAATACGA+TGG | 0.586468 | 6.1:-66242350 | None:intergenic |
GCATTACAATTATTTAACCA+TGG | 0.591945 | 6.1:+66241819 | None:intergenic |
TGATCAGGTCATTTGTCTGA+GGG | 0.593673 | 6.1:+66242264 | None:intergenic |
TGGAGAATTGATGGATGTAG+AGG | 0.593762 | 6.1:-66242330 | MS.gene069706:CDS |
TCAATCTAAAGATTGTGCAC+AGG | 0.604639 | 6.1:-66241467 | MS.gene069706:CDS |
ATGATCAGGTCATTTGTCTG+AGG | 0.607645 | 6.1:+66242263 | None:intergenic |
AAGGCAAATAAAGGCTCAGG+AGG | 0.617382 | 6.1:-66241505 | MS.gene069706:CDS |
GTGGTTCCAGTAAGTCGCCA+TGG | 0.618707 | 6.1:-66241836 | MS.gene069706:CDS |
TCTTCGTGGAGGCAGAAGAG+TGG | 0.628719 | 6.1:-66241744 | MS.gene069706:CDS |
ATGAAATGCTTTCTTCGTGG+AGG | 0.631843 | 6.1:-66241755 | MS.gene069706:CDS |
TAGTGGAAGATCACGACTCG+AGG | 0.632611 | 6.1:-66242213 | MS.gene069706:CDS |
TGGCTATCTTTAAGAGACTG+AGG | 0.636805 | 6.1:+66241873 | None:intergenic |
GGATGAGAATAATGCTCATG+CGG | 0.644136 | 6.1:-66241694 | MS.gene069706:CDS |
ATGGTTAAATAATTGTAATG+CGG | 0.644972 | 6.1:-66241817 | MS.gene069706:CDS |
GATCGTGATAGTGGACTTGG+GGG | 0.648769 | 6.1:-66242056 | MS.gene069706:CDS |
CAAGTCCACTATCACGATCA+CGG | 0.649638 | 6.1:+66242060 | None:intergenic |
GATATCGGCAGTGAAGTGCA+TGG | 0.658952 | 6.1:-66242125 | MS.gene069706:CDS |
CGGTTCAGTTAGGTCAATCG+GGG | 0.686082 | 6.1:-66242171 | MS.gene069706:CDS |
GGAATTGAATCTGATGCACG+CGG | 0.692119 | 6.1:-66242309 | MS.gene069706:CDS |
TGAAGAAGTTGACATTACAA+GGG | 0.707878 | 6.1:-66241586 | MS.gene069706:CDS |
GATAGCCAGATGATTCAGGG+TGG | 0.778676 | 6.1:-66241858 | MS.gene069706:CDS |
GAAATGGAAGATGATCAACA+CGG | 0.810249 | 6.1:-66242191 | MS.gene069706:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGGTTAAATAATTGTAATG+CGG | - | chr6.1:66241967-66241986 | MS.gene069706:CDS | 20.0% |
! | CAAATAAAAACACATACTGA+AGG | - | chr6.1:66241875-66241894 | MS.gene069706:CDS | 25.0% |
! | GCATTACAATTATTTAACCA+TGG | + | chr6.1:66241968-66241987 | None:intergenic | 25.0% |
! | TGGTTAAATAATTGTAATGC+GGG | - | chr6.1:66241968-66241987 | MS.gene069706:CDS | 25.0% |
AAACACTCTCATCATGATTT+CGG | - | chr6.1:66241755-66241774 | MS.gene069706:CDS | 30.0% | |
ATGAAGAAGTTGACATTACA+AGG | - | chr6.1:66242197-66242216 | MS.gene069706:CDS | 30.0% | |
ATTACAAGGGAAGATGATTT+AGG | - | chr6.1:66242211-66242230 | MS.gene069706:CDS | 30.0% | |
CGAACTACTGTCAATAATTA+CGG | - | chr6.1:66242133-66242152 | MS.gene069706:CDS | 30.0% | |
GAACTACTGTCAATAATTAC+GGG | - | chr6.1:66242134-66242153 | MS.gene069706:CDS | 30.0% | |
TGAAGAAGTTGACATTACAA+GGG | - | chr6.1:66242198-66242217 | MS.gene069706:CDS | 30.0% | |
TGATTTCGGAAAGAATTCTA+TGG | - | chr6.1:66241769-66241788 | MS.gene069706:CDS | 30.0% | |
!! | AAAAGCATTCATACAGTCAT+CGG | + | chr6.1:66241999-66242018 | None:intergenic | 30.0% |
AAAGATAGCCAGATGATTCA+GGG | - | chr6.1:66241923-66241942 | MS.gene069706:CDS | 35.0% | |
ACAAATGACCTGATCATGTT+GGG | - | chr6.1:66241527-66241546 | MS.gene069706:CDS | 35.0% | |
ACCTCCAATGACATATTTAC+TGG | + | chr6.1:66241837-66241856 | None:intergenic | 35.0% | |
GAAATGGAAGATGATCAACA+CGG | - | chr6.1:66241593-66241612 | MS.gene069706:CDS | 35.0% | |
GAGTCCAGTAAATATGTCAT+TGG | - | chr6.1:66241830-66241849 | MS.gene069706:CDS | 35.0% | |
GTGCACAATCTTTAGATTGA+AGG | + | chr6.1:66242317-66242336 | None:intergenic | 35.0% | |
TAAAGATAGCCAGATGATTC+AGG | - | chr6.1:66241922-66241941 | MS.gene069706:CDS | 35.0% | |
TCAATACGATGGAGAATTGA+TGG | - | chr6.1:66241445-66241464 | MS.gene069706:CDS | 35.0% | |
TCAATCTAAAGATTGTGCAC+AGG | - | chr6.1:66242317-66242336 | MS.gene069706:CDS | 35.0% | |
TCCAGTAAATATGTCATTGG+AGG | - | chr6.1:66241833-66241852 | MS.gene069706:CDS | 35.0% | |
TGATTTAGGTGTTTCACAAG+AGG | - | chr6.1:66242225-66242244 | MS.gene069706:CDS | 35.0% | |
! | GACTGTATGAATGCTTTTGA+GGG | - | chr6.1:66242001-66242020 | MS.gene069706:CDS | 35.0% |
! | TGACTGTATGAATGCTTTTG+AGG | - | chr6.1:66242000-66242019 | MS.gene069706:CDS | 35.0% |
! | TTATTGGTGGTAGTAGTGAA+GGG | - | chr6.1:66241687-66241706 | MS.gene069706:CDS | 35.0% |
! | TTTATTGGTGGTAGTAGTGA+AGG | - | chr6.1:66241686-66241705 | MS.gene069706:CDS | 35.0% |
!! | GAAGTGCATGGAAGTTTTAT+TGG | - | chr6.1:66241671-66241690 | MS.gene069706:CDS | 35.0% |
!! | GGAAAAGTTCTGAATCATAG+TGG | - | chr6.1:66241554-66241573 | MS.gene069706:CDS | 35.0% |
AGAGCAGGTAAGGCAAATAA+AGG | - | chr6.1:66242270-66242289 | MS.gene069706:CDS | 40.0% | |
AGAGCATGTCAAGCTAGAAA+AGG | - | chr6.1:66242168-66242187 | MS.gene069706:CDS | 40.0% | |
AGATTGTGCACAGGAAAAAC+AGG | - | chr6.1:66242326-66242345 | MS.gene069706:CDS | 40.0% | |
ATGAAATGCTTTCTTCGTGG+AGG | - | chr6.1:66242029-66242048 | MS.gene069706:CDS | 40.0% | |
ATGATCAACACGGTTCAGTT+AGG | - | chr6.1:66241603-66241622 | MS.gene069706:CDS | 40.0% | |
ATGATCAGGTCATTTGTCTG+AGG | + | chr6.1:66241524-66241543 | None:intergenic | 40.0% | |
ATTTAACCATGGCGACTTAC+TGG | + | chr6.1:66241957-66241976 | None:intergenic | 40.0% | |
CTGATGAAATGCTTTCTTCG+TGG | - | chr6.1:66242026-66242045 | MS.gene069706:CDS | 40.0% | |
GACAAATGACCTGATCATGT+TGG | - | chr6.1:66241526-66241545 | MS.gene069706:CDS | 40.0% | |
GGATGAGAATAATGCTCATG+CGG | - | chr6.1:66242090-66242109 | MS.gene069706:CDS | 40.0% | |
TATTTCCGTGATCGTGATAG+TGG | - | chr6.1:66241719-66241738 | MS.gene069706:CDS | 40.0% | |
TGATCAGGTCATTTGTCTGA+GGG | + | chr6.1:66241523-66241542 | None:intergenic | 40.0% | |
TTCACCCGAGAAAAGTTCTA+GGG | - | chr6.1:66242069-66242088 | MS.gene069706:CDS | 40.0% | |
! | CTCATCCCTAGAACTTTTCT+CGG | + | chr6.1:66242077-66242096 | None:intergenic | 40.0% |
! | TATTGGTGGTAGTAGTGAAG+GGG | - | chr6.1:66241688-66241707 | MS.gene069706:CDS | 40.0% |
! | TCATCCCTAGAACTTTTCTC+GGG | + | chr6.1:66242076-66242095 | None:intergenic | 40.0% |
! | TGGAGAATTGATGGATGTAG+AGG | - | chr6.1:66241454-66241473 | MS.gene069706:CDS | 40.0% |
! | TGGCTATCTTTAAGAGACTG+AGG | + | chr6.1:66241914-66241933 | None:intergenic | 40.0% |
!!! | GTGCATGGAAGTTTTATTGG+TGG | - | chr6.1:66241674-66241693 | MS.gene069706:CDS | 40.0% |
AACAGTGATGCTGCCGATAT+CGG | - | chr6.1:66241644-66241663 | MS.gene069706:CDS | 45.0% | |
AAGATCACGACTCGAGGAAA+TGG | - | chr6.1:66241577-66241596 | MS.gene069706:CDS | 45.0% | |
AAGGCAAATAAAGGCTCAGG+AGG | - | chr6.1:66242279-66242298 | MS.gene069706:CDS | 45.0% | |
ACGGTTCAGTTAGGTCAATC+GGG | - | chr6.1:66241612-66241631 | MS.gene069706:CDS | 45.0% | |
ATGCACTTCACTGCCGATAT+CGG | + | chr6.1:66241660-66241679 | None:intergenic | 45.0% | |
CAAGTCCACTATCACGATCA+CGG | + | chr6.1:66241727-66241746 | None:intergenic | 45.0% | |
CACGGTTCAGTTAGGTCAAT+CGG | - | chr6.1:66241611-66241630 | MS.gene069706:CDS | 45.0% | |
CTTCACCCGAGAAAAGTTCT+AGG | - | chr6.1:66242068-66242087 | MS.gene069706:CDS | 45.0% | |
GGAATTGAATCTGATGCACG+CGG | - | chr6.1:66241475-66241494 | MS.gene069706:CDS | 45.0% | |
GGTAAGGCAAATAAAGGCTC+AGG | - | chr6.1:66242276-66242295 | MS.gene069706:CDS | 45.0% | |
TTCCATCTCCCAACATGATC+AGG | + | chr6.1:66241538-66241557 | None:intergenic | 45.0% | |
!! | GTGATCGTGATAGTGGACTT+GGG | - | chr6.1:66241726-66241745 | MS.gene069706:CDS | 45.0% |
!! | TGATCGTGATAGTGGACTTG+GGG | - | chr6.1:66241727-66241746 | MS.gene069706:CDS | 45.0% |
AACCACCACCCTGAATCATC+TGG | + | chr6.1:66241934-66241953 | None:intergenic | 50.0% | |
CGGTTCAGTTAGGTCAATCG+GGG | - | chr6.1:66241613-66241632 | MS.gene069706:CDS | 50.0% | |
GACCTGATCATGTTGGGAGA+TGG | - | chr6.1:66241533-66241552 | MS.gene069706:CDS | 50.0% | |
GATAGCCAGATGATTCAGGG+TGG | - | chr6.1:66241926-66241945 | MS.gene069706:CDS | 50.0% | |
GATATCGGCAGTGAAGTGCA+TGG | - | chr6.1:66241659-66241678 | MS.gene069706:CDS | 50.0% | |
GCAAATAAAGGCTCAGGAGG+AGG | - | chr6.1:66242282-66242301 | MS.gene069706:CDS | 50.0% | |
TAGTGGAAGATCACGACTCG+AGG | - | chr6.1:66241571-66241590 | MS.gene069706:CDS | 50.0% | |
TCAGTTAGGTCAATCGGGGT+GGG | - | chr6.1:66241617-66241636 | MS.gene069706:CDS | 50.0% | |
TTCAGTTAGGTCAATCGGGG+TGG | - | chr6.1:66241616-66241635 | MS.gene069706:CDS | 50.0% | |
!! | CGTGATCGTGATAGTGGACT+TGG | - | chr6.1:66241725-66241744 | MS.gene069706:CDS | 50.0% |
!! | GATCGTGATAGTGGACTTGG+GGG | - | chr6.1:66241728-66241747 | MS.gene069706:CDS | 50.0% |
AGCCAGATGATTCAGGGTGG+TGG | - | chr6.1:66241929-66241948 | MS.gene069706:CDS | 55.0% | |
CTGCTGTGCAAGAGCAGGTA+AGG | - | chr6.1:66242260-66242279 | MS.gene069706:CDS | 55.0% | |
GATTGCTGCTGTGCAAGAGC+AGG | - | chr6.1:66242255-66242274 | MS.gene069706:CDS | 55.0% | |
GTGGTTCCAGTAAGTCGCCA+TGG | - | chr6.1:66241948-66241967 | MS.gene069706:CDS | 55.0% | |
TCTTCGTGGAGGCAGAAGAG+TGG | - | chr6.1:66242040-66242059 | MS.gene069706:CDS | 55.0% | |
GGGACAAAGCTCTGCCAGAC+AGG | + | chr6.1:66241503-66241522 | None:intergenic | 60.0% | |
TGATGCACGCGGAACCTGTC+TGG | - | chr6.1:66241486-66241505 | MS.gene069706:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 66241440 | 66242366 | 66241440 | ID=MS.gene069706 |
chr6.1 | mRNA | 66241440 | 66242366 | 66241440 | ID=MS.gene069706.t1;Parent=MS.gene069706 |
chr6.1 | exon | 66241440 | 66242366 | 66241440 | ID=MS.gene069706.t1.exon1;Parent=MS.gene069706.t1 |
chr6.1 | CDS | 66241440 | 66242366 | 66241440 | ID=cds.MS.gene069706.t1;Parent=MS.gene069706.t1 |
Gene Sequence |
Protein sequence |