Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069808.t1 | XP_003619790.2 | 84 | 200 | 5 | 2 | 1 | 200 | 1 | 173 | 3.90E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069808.t1 | G7KPP1 | 84.0 | 200 | 5 | 2 | 1 | 200 | 1 | 173 | 2.8e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene069808 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene069808 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene060191 | MS.gene069808 | 0.812663 | 3.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069808.t1 | MTR_6g068990 | 83.857 | 223 | 8 | 3 | 1 | 223 | 1 | 195 | 4.05e-105 | 304 |
| MS.gene069808.t1 | MTR_6g068990 | 86.905 | 168 | 10 | 2 | 56 | 223 | 46 | 201 | 6.92e-97 | 284 |
| MS.gene069808.t1 | MTR_6g068990 | 80.328 | 183 | 8 | 3 | 41 | 223 | 1 | 155 | 1.46e-83 | 248 |
| MS.gene069808.t1 | MTR_6g068990 | 75.974 | 154 | 9 | 3 | 70 | 223 | 1 | 126 | 2.62e-60 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069808.t1 | AT1G73350 | 75.152 | 165 | 12 | 3 | 1 | 165 | 1 | 136 | 1.57e-70 | 216 |
| MS.gene069808.t1 | AT1G73350 | 73.939 | 165 | 12 | 4 | 1 | 165 | 1 | 134 | 4.16e-67 | 207 |
| MS.gene069808.t1 | AT1G73350 | 71.200 | 125 | 9 | 2 | 41 | 165 | 1 | 98 | 7.70e-45 | 149 |
| MS.gene069808.t1 | AT1G73350 | 71.200 | 125 | 9 | 2 | 41 | 165 | 1 | 98 | 7.70e-45 | 149 |
| MS.gene069808.t1 | AT1G73350 | 69.600 | 125 | 9 | 3 | 41 | 165 | 1 | 96 | 1.57e-41 | 140 |
| MS.gene069808.t1 | AT1G73350 | 67.890 | 109 | 8 | 2 | 57 | 165 | 33 | 114 | 9.32e-31 | 113 |
| MS.gene069808.t1 | AT1G73350 | 67.890 | 109 | 8 | 2 | 57 | 165 | 58 | 139 | 2.24e-30 | 113 |
Find 68 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATCCCACTCTTTGGCTT+TGG | 0.285761 | 6.2:+72272864 | None:intergenic |
| AGAAAGGAAATGAACATAAA+AGG | 0.308980 | 6.2:+72273966 | None:intergenic |
| ATCAACCTGATCCCACTCTT+TGG | 0.342722 | 6.2:+72272858 | None:intergenic |
| ACCTTTGGGGTCGGTAAGAT+TGG | 0.364856 | 6.2:+72277658 | None:intergenic |
| CGGAGGACGGCGTCGGAGAT+TGG | 0.394141 | 6.2:+72270035 | None:intergenic |
| GGCTTATTGCCTTCAAACCT+TGG | 0.398026 | 6.2:+72272711 | None:intergenic |
| CCTTCAAACCTTGGTCGCTT+AGG | 0.398385 | 6.2:+72272720 | None:intergenic |
| GAGCGTGGAGGTTATCTTCA+TGG | 0.409638 | 6.2:-72274236 | MS.gene069808:CDS |
| GGCTTTGGCTCAACACGTAA+TGG | 0.411633 | 6.2:+72272879 | None:intergenic |
| GTAGAGGAACACCCAGTGTC+AGG | 0.417871 | 6.2:-72272561 | MS.gene069808:CDS |
| ATTGAGGAGCGATCTTTGTC+TGG | 0.422646 | 6.2:-72272594 | MS.gene069808:CDS |
| GGTGGTTCACCACTTGTTCA+TGG | 0.427068 | 6.2:+72270062 | None:intergenic |
| ACTATATCTCAAGGAGCAAA+TGG | 0.436920 | 6.2:-72274058 | MS.gene069808:CDS |
| GACAGCAATCAGTGTTTGTC+AGG | 0.438024 | 6.2:-72272627 | MS.gene069808:CDS |
| AAGCAGATGCAAGAAGTTGC+TGG | 0.449188 | 6.2:-72274260 | MS.gene069808:intron |
| GTGATGCTTCTATTACTAAT+CGG | 0.452512 | 6.2:-72272674 | MS.gene069808:CDS |
| CCTAAGCGACCAAGGTTTGA+AGG | 0.460456 | 6.2:-72272720 | MS.gene069808:CDS |
| CTTTCATGCAACCCTGACAC+TGG | 0.469166 | 6.2:+72272549 | None:intergenic |
| ACAGATAAGAAATTGGGTAA+AGG | 0.470056 | 6.2:-72277522 | MS.gene069808:intron |
| AGCAGATGCAAGAAGTTGCT+GGG | 0.498435 | 6.2:-72274259 | MS.gene069808:intron |
| GTTCAAAACTGCATCTCAAA+GGG | 0.504710 | 6.2:+72269961 | None:intergenic |
| AGACAACGGAGGTGCAGCGG+AGG | 0.517935 | 6.2:+72270018 | None:intergenic |
| GGTGCAGCGGAGGACGGTGC+CGG | 0.520397 | 6.2:+72269991 | None:intergenic |
| GAGAGACAACGGAGGTGCAG+CGG | 0.521208 | 6.2:+72270015 | None:intergenic |
| GTCAGAGGTGCAGCGGAGGA+CGG | 0.522879 | 6.2:+72269985 | None:intergenic |
| AAATCGTAGTTGATTATGGC+AGG | 0.524807 | 6.2:-72277701 | None:intergenic |
| CAAAGCCAAAGAGTGGGATC+AGG | 0.528930 | 6.2:-72272863 | MS.gene069808:intron |
| ATCACAGTAAAAGAAGGAAA+CGG | 0.530326 | 6.2:-72270097 | MS.gene069808:intron |
| GGCTCAACACGTAATGGTAA+AGG | 0.534011 | 6.2:+72272885 | None:intergenic |
| TAAAAGAAGGAAACGGAAGA+AGG | 0.538491 | 6.2:-72270090 | MS.gene069808:CDS |
| TGCATCTCAAAGGGCGTCAG+AGG | 0.539030 | 6.2:+72269970 | None:intergenic |
| AATGGTAAAGGTACTGATGC+AGG | 0.543680 | 6.2:+72272897 | None:intergenic |
| GTCAGGACCAAAGAAAATTG+AGG | 0.543959 | 6.2:-72272610 | MS.gene069808:CDS |
| CAAGAAGTTGCTGGGGAGCG+TGG | 0.548648 | 6.2:-72274251 | MS.gene069808:CDS |
| TTTCCAACGCATGGTTGCAA+AGG | 0.549380 | 6.2:-72277469 | MS.gene069808:intron |
| AGCGTGGAGGTTATCTTCAT+GGG | 0.551295 | 6.2:-72274235 | MS.gene069808:CDS |
| AACGGAGGTGCAGCGGAGGA+CGG | 0.557761 | 6.2:+72270022 | None:intergenic |
| TATGTATATACCTTTGGGGT+CGG | 0.561820 | 6.2:+72277649 | None:intergenic |
| GGAGGTTATCTTCATGGGCG+AGG | 0.565839 | 6.2:-72274230 | MS.gene069808:CDS |
| TTTCATGCAACCCTGACACT+GGG | 0.571180 | 6.2:+72272550 | None:intergenic |
| GCATCACTAGGAGCTTGCAT+TGG | 0.574315 | 6.2:+72272690 | None:intergenic |
| TAGTAGATCGTCACTGTCCA+AGG | 0.576121 | 6.2:+72274077 | None:intergenic |
| TAACCTTTGCAACCATGCGT+TGG | 0.581821 | 6.2:+72277466 | None:intergenic |
| GCACCTCCGTTGTCTCTCTC+CGG | 0.581957 | 6.2:-72270010 | MS.gene069808:CDS |
| GGGCGTCAGAGGTGCAGCGG+AGG | 0.588133 | 6.2:+72269981 | None:intergenic |
| AGACGTTACTTTCCAACGCA+TGG | 0.588343 | 6.2:-72277478 | MS.gene069808:CDS |
| CAAGGAGCAAATGGAAGCTG+AGG | 0.592081 | 6.2:-72274049 | MS.gene069808:CDS |
| GGTGCAGCGGAGGACGGCGT+CGG | 0.592484 | 6.2:+72270028 | None:intergenic |
| TGGGACTGTTATCTACAGAA+AGG | 0.599020 | 6.2:+72273950 | None:intergenic |
| TAGAGGAACACCCAGTGTCA+GGG | 0.615935 | 6.2:-72272560 | MS.gene069808:CDS |
| GTTGAGCCAAAGCCAAAGAG+TGG | 0.615970 | 6.2:-72272870 | MS.gene069808:CDS |
| AAAGGGCGTCAGAGGTGCAG+CGG | 0.616021 | 6.2:+72269978 | None:intergenic |
| TATATATGTATATACCTTTG+GGG | 0.620557 | 6.2:+72277645 | None:intergenic |
| AGATTAAACCTAAGCGACCA+AGG | 0.621946 | 6.2:-72272728 | MS.gene069808:CDS |
| AAGGAACAACCATGAACAAG+TGG | 0.622537 | 6.2:-72270071 | MS.gene069808:CDS |
| GTCTGGATCGAAGAAAGTAG+AGG | 0.632307 | 6.2:-72272577 | MS.gene069808:CDS |
| TGACGATCTACTATATCTCA+AGG | 0.641457 | 6.2:-72274067 | MS.gene069808:CDS |
| TTGAGCCAAAGCCAAAGAGT+GGG | 0.647588 | 6.2:-72272869 | MS.gene069808:CDS |
| ACGGCGTCGGAGATTGGCAA+CGG | 0.648526 | 6.2:+72270041 | None:intergenic |
| GGTTATCTTCATGGGCGAGG+CGG | 0.653241 | 6.2:-72274227 | MS.gene069808:intron |
| ACGGTGCCGGAGAGAGACAA+CGG | 0.656330 | 6.2:+72270004 | None:intergenic |
| GCAGATGCAAGAAGTTGCTG+GGG | 0.658673 | 6.2:-72274258 | MS.gene069808:intron |
| GCGTCGGAGATTGGCAACGG+TGG | 0.659266 | 6.2:+72270044 | None:intergenic |
| ACCAATCTTACCGACCCCAA+AGG | 0.660181 | 6.2:-72277659 | MS.gene069808:intron |
| GAAGTTGCTGGGGAGCGTGG+AGG | 0.665466 | 6.2:-72274248 | MS.gene069808:CDS |
| CTTTACCATTAGATACAGAG+CGG | 0.686766 | 6.2:-72272940 | MS.gene069808:intron |
| TTAGTAATAGAAGCATCACT+AGG | 0.690439 | 6.2:+72272678 | None:intergenic |
| GTGCCGGAGAGAGACAACGG+AGG | 0.769445 | 6.2:+72270007 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 72269976 | 72277708 | 72269976 | ID=MS.gene069808 |
| chr6.2 | mRNA | 72269976 | 72277708 | 72269976 | ID=MS.gene069808.t1;Parent=MS.gene069808 |
| chr6.2 | exon | 72277660 | 72277708 | 72277660 | ID=MS.gene069808.t1.exon1;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72277660 | 72277708 | 72277660 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| chr6.2 | exon | 72277470 | 72277540 | 72277470 | ID=MS.gene069808.t1.exon2;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72277470 | 72277540 | 72277470 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| chr6.2 | exon | 72274228 | 72274276 | 72274228 | ID=MS.gene069808.t1.exon3;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72274228 | 72274276 | 72274228 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| chr6.2 | exon | 72273949 | 72274099 | 72273949 | ID=MS.gene069808.t1.exon4;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72273949 | 72274099 | 72273949 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| chr6.2 | exon | 72272864 | 72272950 | 72272864 | ID=MS.gene069808.t1.exon5;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72272864 | 72272950 | 72272864 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| chr6.2 | exon | 72272550 | 72272812 | 72272550 | ID=MS.gene069808.t1.exon6;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72272550 | 72272812 | 72272550 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| chr6.2 | exon | 72269976 | 72270112 | 72269976 | ID=MS.gene069808.t1.exon7;Parent=MS.gene069808.t1 |
| chr6.2 | CDS | 72269976 | 72270112 | 72269976 | ID=cds.MS.gene069808.t1;Parent=MS.gene069808.t1 |
| Gene Sequence |
| Protein sequence |