AlfalfaGEDB | MS.gene069965

M. sativa cultivar XinJiangDaYe / MS.gene069965

KEGG: K02966
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01090.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069965.t1	XP_013458956.1	73.1	145	36	2	1	144	1	143	2.80E-45	191.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069965.t1	Q9SGA6	57.9	145	58	2	1	144	1	143	9.9e-39	161.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069965.t1	A0A072UT55	73.1	145	36	2	1	144	1	143	2.1e-45	191.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049190	MS.gene069965	0.822586	2.19E-53	-1.69E-46
MS.gene05157	MS.gene069965	0.820255	7.55E-53	-1.69E-46
MS.gene051744	MS.gene069965	0.81759	3.05E-52	-1.69E-46
MS.gene053122	MS.gene069965	0.801443	8.98E-49	-1.69E-46
MS.gene053144	MS.gene069965	0.808543	2.94E-50	-1.69E-46
MS.gene053226	MS.gene069965	0.808406	3.15E-50	-1.69E-46
MS.gene054584	MS.gene069965	0.803003	4.29E-49	-1.69E-46
MS.gene055466	MS.gene069965	0.812351	4.43E-51	-1.69E-46
MS.gene056228	MS.gene069965	0.812694	3.73E-51	-1.69E-46
MS.gene060429	MS.gene069965	0.81829	2.12E-52	-1.69E-46

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069965.t1	MTR_3g013635	73.103	145	36	2	1	144	1	143	1.67e-66	198
MS.gene069965.t1	MTR_3g013635	73.103	145	36	2	1	144	1	143	1.67e-66	198
MS.gene069965.t1	MTR_8g040740	62.759	145	51	2	1	144	1	143	2.20e-58	178

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069965.t1	AT5G61170	59.722	144	55	2	1	143	1	142	7.81e-54	166
MS.gene069965.t1	AT3G02080	57.931	145	58	2	1	144	1	143	9.62e-54	166
MS.gene069965.t1	AT5G15520	58.451	142	56	2	1	141	1	140	1.43e-51	160

Showing 1 to 3 of 3 entries

Previous1Next

Find 48 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGATGGAGCTTCCAGAA+TGG	0.551656	3.3:+79452016	MS.gene069965:intron
AACAGTCCTTGCGGTAGCCA+TGG	0.543735	3.3:-79451048	None:intergenic
AACATCTTGAACAGTCCTTG+CGG	0.675305	3.3:-79451057	None:intergenic
ACCCCTCAAGTAGATCTTCC+TGG	0.431786	3.3:-79452250	None:intergenic
ACTGGTTACTACGTCAGAGC+TGG	0.580139	3.3:+79452091	MS.gene069965:CDS
AGATCACTTCCAGTGGCTGG+AGG	0.640848	3.3:+79452714	MS.gene069965:CDS
AGGAAGATCTACTTGAGGGG+TGG	0.621735	3.3:+79452252	MS.gene069965:CDS
AGGGATTTGGACCAAGTTGC+TGG	0.348464	3.3:+79452734	MS.gene069965:CDS
AGTAACCAGTCTGGGTCATA+AGG	0.485903	3.3:-79452078	None:intergenic
CAAGTAGATCTTCCTGGCCA+TGG	0.517027	3.3:-79452244	None:intergenic

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTACTGCTCAACAAATGT+TGG	-	chr3.3:79452567-79452586	None:intergenic	35.0%
CTACGGTTTACAATAGGAAT+AGG	+	chr3.3:79452455-79452474	MS.gene069965:intron	35.0%
GAACATGAACCTTATTGAGA+TGG	+	chr3.3:79452394-79452413	MS.gene069965:CDS	35.0%
GTTAATTTAAACAAGGGACC+AGG	-	chr3.3:79452146-79452165	None:intergenic	35.0%
TACATAGATATACTTGGGCA+TGG	+	chr3.3:79451789-79451808	MS.gene069965:intron	35.0%
TATTCAAGCTCTACTTCAAC+TGG	+	chr3.3:79451881-79451900	MS.gene069965:intron	35.0%
TTCACAATATCTGTCCATTC+TGG	-	chr3.3:79452033-79452052	None:intergenic	35.0%
TTGATTCAGAGTTACGCATT+TGG	+	chr3.3:79451544-79451563	MS.gene069965:intron	35.0%
AACATCTTGAACAGTCCTTG+CGG	-	chr3.3:79451060-79451079	None:intergenic	40.0%
CAGATATTGTGAAGACTGCA+AGG	+	chr3.3:79452040-79452059	MS.gene069965:CDS	40.0%

Showing 1 to 10 of 93 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	79451050	79452778	79451050	ID=MS.gene069965
chr3.3	mRNA	79451050	79452778	79451050	ID=MS.gene069965.t1;Parent=MS.gene069965
chr3.3	exon	79451050	79451133	79451050	ID=MS.gene069965.t1.exon1;Parent=MS.gene069965.t1
chr3.3	CDS	79451050	79451133	79451050	ID=cds.MS.gene069965.t1;Parent=MS.gene069965.t1
chr3.3	exon	79452021	79452112	79452021	ID=MS.gene069965.t1.exon2;Parent=MS.gene069965.t1
chr3.3	CDS	79452021	79452112	79452021	ID=cds.MS.gene069965.t1;Parent=MS.gene069965.t1
chr3.3	exon	79452241	79452426	79452241	ID=MS.gene069965.t1.exon3;Parent=MS.gene069965.t1
chr3.3	CDS	79452241	79452426	79452241	ID=cds.MS.gene069965.t1;Parent=MS.gene069965.t1
chr3.3	exon	79452706	79452778	79452706	ID=MS.gene069965.t1.exon4;Parent=MS.gene069965.t1
chr3.3	CDS	79452706	79452778	79452706	ID=cds.MS.gene069965.t1;Parent=MS.gene069965.t1

Gene Sequence

>MS.gene069965

ATGGCTACCGCAAGGACTGTTCAAGATGTTTCTTCACACGAGTTTGTCAAAGCTTACTCTGCTCATCTCAAAAGATCTGGCAAGGTTAATCAATTCACCGAAAAATTTCATTTTGGTTTTTCTAATTGATTGTGTATGATTCGATTGTTTTTTTTTTTTTTATTTGAAGAGGAATTTGTTTTGATTTGCTTCATGGGTTCATGAATATTTGTTGAATTATTCTGTTTTAGTAGCTTTTTTGTTTTTGTTATTTTTATTTATTTATAAATTGTCATGCTTTATTGTTTAGATTTGTGTTTTTTGTGTTTTTAATGTTATGTTTTATGTTAGGTTTGGTAAAGTTTATAACTTGATCTACTTCGTTGCTGTGTCTTGTTGAATGTAGTTTTGTTTGTCTAATCCTAACAAAAAAATGTTTTTGATTTGATTTGATTGGATTAATAAATAGAAAAATGTTCGTTGTGATGTTAATATGCTGTAATTTTTATAAGTGATTGATTCAGAGTTACGCATTTGGTTCAGAAAACTAGTGACATGATAGATTTGTGATTTTTCTCTTACACTTGTTTTTGATTAGTTTTAGTGAATACATTCAAGTTGATTATGATTGTTTTTGTTAATCAAATTAGGAATGATTTTCTGTATTATATGATGTTGATGACAGTTTTTATTTTTTTATGCTATGAATTGTAATGTCCCTTTTGAACTTTCAAAATTTGTTGTTGGATCCTTATCTAATTACATAGATATACTTGGGCATGGTTTCATCTCACGTGTTGGCTTAGTTTTAGATATAACTTTCATTATGCTTTTGATTTTTTATGTATTATGTATTCAAGCTCTACTTCAACTGGTGTGGATCTAGTTTATAATTGATACGAATGATTGGCCGTGTAATTGTATAGTTCATATTTAGTTGGATTATTATTTCTAATTATAGTTTTTTGTTTTCCTTATTTTGTTATGAACAGATGGAGCTTCCAGAATGGACAGATATTGTGAAGACTGCAAGGTTTAAGGAGTTGGCTCCTTATGACCCAGACTGGTTACTACGTCAGAGCTGGTGAGTTTCTGTGTTTGATTTTGTGCATTTCCTGGTCCCTTGTTTAAATTAACAAAAAAATAACTTTCGAGGGTACATTTTTTGATCAACCTGTTGTTGAAAATTGCAATGTGTTTTTTGTGCCGCAGCTTCCATGGCCAGGAAGATCTACTTGAGGGGTGGACTCCGGTGTTGGAGCATTCCAGAGGATTTATGGTGGAAGTCAGAGAAATGGCAGTCGTCCACCTCATATCTGCAAGTAGCAGTGGTTCCATTGCTCGCCACATTCTTCAACAGTTGCAGAACATGAACCTTATTGAGATGGACACCAAGGGGTAAGAACTCATTATCTTTGTTAGCCTGCTACGGTTTACAATAGGAATAGGACGATTAAGAGAATAGTAACAAAGATTAGTCAAAGCTCAGCAATGTAAATCAAATAGTTTATTTAATGTTCACTTGTATCCTGATACCAACATTTGTTGAGCAGTAGTTGATGCTTTCTGCATCTGTGCTTTTATTTATAGTGATTGGCATTTGCTCAAAAATAGTTTATGCTATTCTGCATCAGCCCTTCATATCATGTTTTTAACATTGATTTTTCTTTATCACAGTGGCAGGAAGATCACTTCCAGTGGCTGGAGGGATTTGGACCAAGTTGCTGGACGTATTGTTATTGCACCTTGA

Protein sequence

>MS.gene069965.t1

MATARTVQDVSSHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWLLRQSCFHGQEDLLEGWTPVLEHSRGFMVEVREMAVVHLISASSSGSIARHILQQLQNMNLIEMDTKGGRKITSSGWRDLDQVAGRIVIAP