Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070245.t1 | XP_003610117.1 | 97.9 | 241 | 4 | 1 | 1 | 240 | 61 | 301 | 1.10E-129 | 472.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070245.t1 | Q8VZP1 | 76.1 | 238 | 56 | 1 | 1 | 237 | 1 | 238 | 1.9e-103 | 376.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070245.t1 | G7JVF5 | 97.9 | 241 | 4 | 1 | 1 | 240 | 61 | 301 | 7.7e-130 | 472.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85927 | MS.gene070245 | PPI |
MS.gene070245 | MS.gene53154 | PPI |
MS.gene55353 | MS.gene070245 | PPI |
MS.gene78610 | MS.gene070245 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070245.t1 | MTR_4g128090 | 97.925 | 241 | 4 | 1 | 1 | 240 | 61 | 301 | 1.12e-173 | 479 |
MS.gene070245.t1 | MTR_4g091060 | 37.719 | 228 | 135 | 4 | 10 | 237 | 5 | 225 | 4.37e-43 | 147 |
MS.gene070245.t1 | MTR_4g091060 | 37.719 | 228 | 135 | 4 | 10 | 237 | 5 | 225 | 6.46e-42 | 146 |
MS.gene070245.t1 | MTR_2g091220 | 37.118 | 229 | 129 | 7 | 13 | 237 | 11 | 228 | 6.32e-35 | 125 |
MS.gene070245.t1 | MTR_2g091220 | 37.118 | 229 | 129 | 7 | 13 | 237 | 11 | 228 | 7.35e-35 | 125 |
MS.gene070245.t1 | MTR_2g091220 | 37.118 | 229 | 129 | 7 | 13 | 237 | 11 | 228 | 9.28e-34 | 125 |
MS.gene070245.t1 | MTR_4g091060 | 40.123 | 162 | 92 | 3 | 76 | 237 | 10 | 166 | 9.25e-30 | 113 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene070245.t1 | AT5G57440 | 76.050 | 238 | 56 | 1 | 1 | 237 | 1 | 238 | 3.96e-136 | 382 |
MS.gene070245.t1 | AT4G25840 | 76.190 | 231 | 55 | 0 | 10 | 240 | 68 | 298 | 2.87e-133 | 377 |
MS.gene070245.t1 | AT4G21470 | 35.345 | 232 | 143 | 4 | 6 | 237 | 4 | 228 | 8.46e-40 | 141 |
Find 48 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATGCATCATGTTGTTCT+TGG | 0.193950 | 8.2:-6115450 | MS.gene070245:CDS |
CTTCTCTTTCAACAAGAAAT+TGG | 0.261291 | 8.2:+6117815 | None:intergenic |
GTTCCAATTGCCGTGGCAAC+TGG | 0.292460 | 8.2:-6115662 | MS.gene070245:CDS |
TACCCAGTTGCCACGGCAAT+TGG | 0.323593 | 8.2:+6115659 | None:intergenic |
GGTTTGCCTTGTTTAACTTC+AGG | 0.330793 | 8.2:+6115420 | None:intergenic |
GTGTTGTAGGTCTGTTGTTA+TGG | 0.365140 | 8.2:-6113533 | MS.gene070245:intron |
GTTTGCCTTGTTTAACTTCA+GGG | 0.369613 | 8.2:+6115421 | None:intergenic |
TTACCTCCGTTTGAAGATGA+TGG | 0.421278 | 8.2:-6113421 | MS.gene070245:CDS |
CCTGGCATGAGCTCGCTTGT+TGG | 0.428334 | 8.2:+6117772 | None:intergenic |
TGCTGCAGCCAGGAGATTTG+AGG | 0.448286 | 8.2:-6115379 | MS.gene070245:intron |
GCCTCTCAAGGCAAAGATGA+TGG | 0.451010 | 8.2:-6117908 | MS.gene070245:CDS |
CAATTTCCATCATCTTCAAA+CGG | 0.457681 | 8.2:+6113415 | None:intergenic |
TGAAAAGATTTGTCCAGCCT+TGG | 0.458300 | 8.2:+6113502 | None:intergenic |
GATTTGTCCAGCCTTGGATC+AGG | 0.474667 | 8.2:+6113508 | None:intergenic |
CCCATCATCTTTGCCTTGAG+AGG | 0.490842 | 8.2:+6117907 | None:intergenic |
ATGTATTTCTTGCTGCAGCC+AGG | 0.492722 | 8.2:-6115389 | MS.gene070245:CDS |
GACACCGACGGAGGAGGGAT+TGG | 0.493233 | 8.2:+6118141 | None:intergenic |
CTCAAGCATCTACATGCAAA+AGG | 0.496114 | 8.2:-6115686 | MS.gene070245:CDS |
GTTCGTGCAGCTAAGAATGC+TGG | 0.496579 | 8.2:-6115116 | MS.gene070245:CDS |
CCAACAATGAGTTCAAAACT+TGG | 0.503574 | 8.2:+6113467 | None:intergenic |
CCAACAAGCGAGCTCATGCC+AGG | 0.507539 | 8.2:-6117772 | MS.gene070245:intron |
GGAGGTAAACTCCACTCACT+AGG | 0.512625 | 8.2:+6113436 | None:intergenic |
TTGTTATGGTTCCTGATCCA+AGG | 0.516102 | 8.2:-6113519 | MS.gene070245:CDS |
TATATATACCTCAAATCTCC+TGG | 0.525175 | 8.2:+6115371 | None:intergenic |
GCTGCAGCAAGAAATACATC+TGG | 0.528849 | 8.2:+6115393 | None:intergenic |
GACATGGACGGTCTCTTGCT+AGG | 0.538355 | 8.2:-6118091 | MS.gene070245:intron |
AACTGAAAACGCAAAGACAC+GGG | 0.538812 | 8.2:-6115485 | MS.gene070245:CDS |
TTCCAATTGCCGTGGCAACT+GGG | 0.540048 | 8.2:-6115661 | MS.gene070245:intron |
TATGGTTCCTGATCCAAGGC+TGG | 0.543162 | 8.2:-6113515 | MS.gene070245:CDS |
GAAAGCGATTGAAGCTGCTA+AGG | 0.553025 | 8.2:-6117881 | MS.gene070245:CDS |
GAACTGAAAACGCAAAGACA+CGG | 0.557091 | 8.2:-6115486 | MS.gene070245:CDS |
CCTCTCAAGGCAAAGATGAT+GGG | 0.558033 | 8.2:-6117907 | MS.gene070245:CDS |
TTTCTGACACCGACGGAGGA+GGG | 0.569799 | 8.2:+6118136 | None:intergenic |
TGGATTTCAACCCTAGTGAG+TGG | 0.575322 | 8.2:-6113447 | MS.gene070245:CDS |
AGAATATTACTCGGATCCAC+TGG | 0.577509 | 8.2:+6115164 | None:intergenic |
TCTTTCAACAAGAAATTGGT+CGG | 0.578381 | 8.2:+6117819 | None:intergenic |
TGAAATTTACCCAGTTGCCA+CGG | 0.584481 | 8.2:+6115652 | None:intergenic |
GAGGTAAACTCCACTCACTA+GGG | 0.599003 | 8.2:+6113437 | None:intergenic |
GCAAGAAATACATCTGGTGA+TGG | 0.606339 | 8.2:+6115399 | None:intergenic |
TGATCAACAGGGTGGACCAG+TGG | 0.613544 | 8.2:-6115180 | MS.gene070245:intron |
CTTAGCTGCACGAACTCCAG+AGG | 0.618799 | 8.2:+6115124 | None:intergenic |
ATGACCAATCCCTCCTCCGT+CGG | 0.624552 | 8.2:-6118145 | MS.gene070245:CDS |
TTAGCTGCACGAACTCCAGA+GGG | 0.640809 | 8.2:+6115125 | None:intergenic |
TTTCCATCATCTTCAAACGG+AGG | 0.641636 | 8.2:+6113418 | None:intergenic |
AAAAGGAGTTCCAATTGCCG+TGG | 0.660340 | 8.2:-6115669 | MS.gene070245:CDS |
GATGACCCTGAAGTTAAACA+AGG | 0.674433 | 8.2:-6115426 | MS.gene070245:CDS |
TTGAAAGAGAAGATATGCTG+CGG | 0.688166 | 8.2:-6117804 | MS.gene070245:CDS |
ACTGAAAACGCAAAGACACG+GGG | 0.708609 | 8.2:-6115484 | MS.gene070245:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAACCAATAAAA+AGG | + | chr8.2:6114559-6114578 | None:intergenic | 10.0% |
!! | AAAAAAAAAACCAATAAAAA+GGG | + | chr8.2:6114558-6114577 | None:intergenic | 10.0% |
!!! | TCTTTTACTTTTTTTTTTTT+GGG | - | chr8.2:6115952-6115971 | MS.gene070245:intron | 10.0% |
!!! | TTATTGGTTTTTTTTTTTTT+TGG | - | chr8.2:6114561-6114580 | MS.gene070245:intron | 10.0% |
!!! | TTTTATTGATTTGTATAAAT+TGG | - | chr8.2:6114058-6114077 | MS.gene070245:intron | 10.0% |
!! | AAAACATTTATATGTTTACT+GGG | - | chr8.2:6116967-6116986 | MS.gene070245:intron | 15.0% |
!! | AAAATCCAAAAAGAATATAA+AGG | + | chr8.2:6117529-6117548 | None:intergenic | 15.0% |
!! | AATAGTACATGATTAAAAAA+TGG | - | chr8.2:6113964-6113983 | MS.gene070245:intron | 15.0% |
!! | TGTATATTATTGATATTTAC+CGG | - | chr8.2:6115183-6115202 | MS.gene070245:intron | 15.0% |
!! | TTGTGAAAAGAATAAAAAAA+GGG | + | chr8.2:6114486-6114505 | None:intergenic | 15.0% |
!! | TTTATATGCTATGAATTATT+TGG | - | chr8.2:6117587-6117606 | MS.gene070245:intron | 15.0% |
!!! | ATAGTTTTCTTACTTTTTAA+TGG | - | chr8.2:6115238-6115257 | MS.gene070245:intron | 15.0% |
!!! | CTTTTACTTTTTTTTTTTTG+GGG | - | chr8.2:6115953-6115972 | MS.gene070245:intron | 15.0% |
!!! | GTCTTTTACTTTTTTTTTTT+TGG | - | chr8.2:6115951-6115970 | MS.gene070245:intron | 15.0% |
!!! | GTTTTTTAACTAAACATATA+TGG | - | chr8.2:6116507-6116526 | MS.gene070245:intron | 15.0% |
!!! | TTCTTAAACTTCAATATTTT+TGG | - | chr8.2:6114905-6114924 | MS.gene070245:intron | 15.0% |
!! | AAAATAAGTTAAAATAGCGT+TGG | + | chr8.2:6117141-6117160 | None:intergenic | 20.0% |
!! | AAATGTAATGAAATTGATCA+AGG | + | chr8.2:6117922-6117941 | None:intergenic | 20.0% |
!! | AATATAAGCAACATTTATAG+TGG | + | chr8.2:6115596-6115615 | None:intergenic | 20.0% |
!! | ATAGGTAACAAACATTATTA+TGG | + | chr8.2:6117324-6117343 | None:intergenic | 20.0% |
!! | ATATATAAGTGTTTATTGAG+AGG | + | chr8.2:6117568-6117587 | None:intergenic | 20.0% |
!! | ATCTCAATATGTAACTAATT+GGG | - | chr8.2:6115007-6115026 | MS.gene070245:intron | 20.0% |
!! | CAAAACATTTATATGTTTAC+TGG | - | chr8.2:6116966-6116985 | MS.gene070245:intron | 20.0% |
!! | GATAAGTATTTATGCTATAA+GGG | - | chr8.2:6117270-6117289 | MS.gene070245:intron | 20.0% |
!! | GTTGTGAAAAGAATAAAAAA+AGG | + | chr8.2:6114487-6114506 | None:intergenic | 20.0% |
!! | TAGAATAAGTTTCATTCTTT+CGG | + | chr8.2:6114532-6114551 | None:intergenic | 20.0% |
!! | TAGGTAACAAACATTATTAT+GGG | + | chr8.2:6117323-6117342 | None:intergenic | 20.0% |
!! | TCAAAAACAAGAATATTACT+CGG | + | chr8.2:6116407-6116426 | None:intergenic | 20.0% |
!! | TGATAAGTATTTATGCTATA+AGG | - | chr8.2:6117269-6117288 | MS.gene070245:intron | 20.0% |
!!! | AAATTTTAACAAATCAGAAG+TGG | + | chr8.2:6114335-6114354 | None:intergenic | 20.0% |
!!! | CTACATTTTTGTTTTTTACA+TGG | - | chr8.2:6113506-6113525 | MS.gene070245:CDS | 20.0% |
!!! | CTTAACCTTTATATTCTTTT+TGG | - | chr8.2:6117521-6117540 | MS.gene070245:intron | 20.0% |
!!! | GATACAATAAAACTTTTGAA+TGG | - | chr8.2:6113629-6113648 | MS.gene070245:intron | 20.0% |
!!! | TATTCTTTTCACAACTTATA+AGG | - | chr8.2:6114492-6114511 | MS.gene070245:intron | 20.0% |
! | AAATCACCAATATATCTTTC+TGG | + | chr8.2:6116881-6116900 | None:intergenic | 25.0% |
! | AAATGAGAATGAACAACTAT+TGG | + | chr8.2:6114306-6114325 | None:intergenic | 25.0% |
! | AACAACCTTTGTGTAAAAAT+AGG | - | chr8.2:6114381-6114400 | MS.gene070245:intron | 25.0% |
! | AAGTTGAAACATGCTAAATA+AGG | + | chr8.2:6115122-6115141 | None:intergenic | 25.0% |
! | AATGAACCAGAAAGATATAT+TGG | - | chr8.2:6116872-6116891 | MS.gene070245:intron | 25.0% |
! | ACAACCTTTGTGTAAAAATA+GGG | - | chr8.2:6114382-6114401 | MS.gene070245:intron | 25.0% |
! | ACATCAGCATATAAAAAAAG+TGG | + | chr8.2:6115811-6115830 | None:intergenic | 25.0% |
! | ACTAAATGTGAATGTTGATA+TGG | - | chr8.2:6117022-6117041 | MS.gene070245:intron | 25.0% |
! | ATTCGTAATAAACAGCAAAA+AGG | + | chr8.2:6113546-6113565 | None:intergenic | 25.0% |
! | CATCTCAATATGTAACTAAT+TGG | - | chr8.2:6115006-6115025 | MS.gene070245:intron | 25.0% |
! | CTAAATGTGAATGTTGATAT+GGG | - | chr8.2:6117023-6117042 | MS.gene070245:intron | 25.0% |
! | GTAAATATTGAACTTTACTC+AGG | - | chr8.2:6115618-6115637 | MS.gene070245:intron | 25.0% |
! | TAAAACTTCTTCCTATGTAT+AGG | - | chr8.2:6115552-6115571 | MS.gene070245:intron | 25.0% |
! | TAAATGTGAATGTTGATATG+GGG | - | chr8.2:6117024-6117043 | MS.gene070245:intron | 25.0% |
! | TTATCCAATAGCTTAATTGA+GGG | + | chr8.2:6114809-6114828 | None:intergenic | 25.0% |
! | TTCATAACATAAATATACCG+TGG | - | chr8.2:6116765-6116784 | MS.gene070245:intron | 25.0% |
! | TTCGTAATAAACAGCAAAAA+GGG | + | chr8.2:6113545-6113564 | None:intergenic | 25.0% |
! | TTGTTAAATAGCAGTTATAG+TGG | + | chr8.2:6117804-6117823 | None:intergenic | 25.0% |
! | TTTATCCAATAGCTTAATTG+AGG | + | chr8.2:6114810-6114829 | None:intergenic | 25.0% |
!! | AAATGTTTTGCAGATGAAAT+CGG | + | chr8.2:6116956-6116975 | None:intergenic | 25.0% |
!! | AGAAAGATATATTGGTGATT+TGG | - | chr8.2:6116880-6116899 | MS.gene070245:intron | 25.0% |
!! | ATATGGTTTTCTGATTCTAT+TGG | + | chr8.2:6116659-6116678 | None:intergenic | 25.0% |
!! | ATATGTCTTATTGACTATCA+AGG | - | chr8.2:6114014-6114033 | MS.gene070245:intron | 25.0% |
!! | ATTAATGACTTTTGTGAACT+TGG | - | chr8.2:6116216-6116235 | MS.gene070245:intron | 25.0% |
!! | ATTTCTGCTATTTATTGTGA+AGG | + | chr8.2:6114743-6114762 | None:intergenic | 25.0% |
!!! | ATAATATACAGAGAAGTACT+AGG | + | chr8.2:6115173-6115192 | None:intergenic | 25.0% |
!!! | ATGTGTGTTTTGTTATATGT+AGG | - | chr8.2:6114223-6114242 | MS.gene070245:intron | 25.0% |
!!! | ATGTTCTGAAATGTTTATGT+TGG | - | chr8.2:6115273-6115292 | MS.gene070245:intron | 25.0% |
!!! | ATTTTCCTGGTTTGAATTTA+AGG | - | chr8.2:6116270-6116289 | MS.gene070245:intron | 25.0% |
!!! | CAACTTCTTTTTGAAGATAT+GGG | - | chr8.2:6115373-6115392 | MS.gene070245:intron | 25.0% |
!!! | CCAAACTAGTTTGTTTATTA+GGG | - | chr8.2:6115683-6115702 | MS.gene070245:CDS | 25.0% |
!!! | TCCAAACTAGTTTGTTTATT+AGG | - | chr8.2:6115682-6115701 | MS.gene070245:CDS | 25.0% |
AAAATATGAATCTCAGAAGC+TGG | - | chr8.2:6117366-6117385 | MS.gene070245:intron | 30.0% | |
AAACAGATGATGTACAATCA+TGG | + | chr8.2:6116586-6116605 | None:intergenic | 30.0% | |
AAATATGAATCTCAGAAGCT+GGG | - | chr8.2:6117367-6117386 | MS.gene070245:intron | 30.0% | |
AACATTATTATGGGTCTGTT+TGG | + | chr8.2:6117314-6117333 | None:intergenic | 30.0% | |
ACCTATTACAAATGAAAAGC+AGG | + | chr8.2:6115841-6115860 | None:intergenic | 30.0% | |
ACTAGTGTGTGAATGTTATA+TGG | + | chr8.2:6116676-6116695 | None:intergenic | 30.0% | |
AGATATGTCTTCATATATGC+CGG | + | chr8.2:6115205-6115224 | None:intergenic | 30.0% | |
CAATTTCCATCATCTTCAAA+CGG | + | chr8.2:6118147-6118166 | None:intergenic | 30.0% | |
CCCTAATAAACAAACTAGTT+TGG | + | chr8.2:6115686-6115705 | None:intergenic | 30.0% | |
CTTCTCTTTCAACAAGAAAT+TGG | + | chr8.2:6113747-6113766 | None:intergenic | 30.0% | |
CTTTGTGTAAAAATAGGGTA+AGG | - | chr8.2:6114387-6114406 | MS.gene070245:intron | 30.0% | |
GCTGGTAAATATTATCAACT+GGG | + | chr8.2:6117464-6117483 | None:intergenic | 30.0% | |
GTGTATTAATTCCATTTACC+TGG | + | chr8.2:6113808-6113827 | None:intergenic | 30.0% | |
TAAATGTGCTTTCTATACCA+CGG | + | chr8.2:6116785-6116804 | None:intergenic | 30.0% | |
TAATGAAATTGATCAAGGTG+AGG | + | chr8.2:6117917-6117936 | None:intergenic | 30.0% | |
TATATATACCTCAAATCTCC+TGG | + | chr8.2:6116191-6116210 | None:intergenic | 30.0% | |
TATATGTTCATAACATGCTG+TGG | - | chr8.2:6116703-6116722 | MS.gene070245:intron | 30.0% | |
TATCCAATAGCTTAATTGAG+GGG | + | chr8.2:6114808-6114827 | None:intergenic | 30.0% | |
TCATATAAGTGCTTATGTCT+AGG | + | chr8.2:6117252-6117271 | None:intergenic | 30.0% | |
TCTTTCAACAAGAAATTGGT+CGG | + | chr8.2:6113743-6113762 | None:intergenic | 30.0% | |
TTGAATGTAACTACATGTGT+TGG | - | chr8.2:6113860-6113879 | MS.gene070245:intron | 30.0% | |
TTGTCAAATATCTGTTACAG+TGG | + | chr8.2:6117677-6117696 | None:intergenic | 30.0% | |
! | AGAAAGCACATTTAGTAGAA+TGG | - | chr8.2:6116791-6116810 | MS.gene070245:intron | 30.0% |
! | ATGCAAAACAATTTGAGATG+CGG | + | chr8.2:6115442-6115461 | None:intergenic | 30.0% |
! | CACTATAACTGCTATTTAAC+CGG | - | chr8.2:6117771-6117790 | MS.gene070245:intron | 30.0% |
! | GAAAGCACATTTAGTAGAAT+GGG | - | chr8.2:6116792-6116811 | MS.gene070245:intron | 30.0% |
! | GAAGTCTGATTCAATACTTT+TGG | - | chr8.2:6114939-6114958 | MS.gene070245:intron | 30.0% |
! | GGTTTGCTTGGTATATTTAA+TGG | - | chr8.2:6115294-6115313 | MS.gene070245:intron | 30.0% |
! | GTTTGTTACCTATGTATATG+AGG | - | chr8.2:6117331-6117350 | MS.gene070245:intron | 30.0% |
! | TATTCTAGCACCCTTTTTAT+TGG | - | chr8.2:6114545-6114564 | MS.gene070245:intron | 30.0% |
! | TCTAGTCGTATATTTTGTGT+AGG | - | chr8.2:6114714-6114733 | MS.gene070245:intron | 30.0% |
! | TGCATTTCACTGATTGTATT+TGG | + | chr8.2:6117486-6117505 | None:intergenic | 30.0% |
! | TTTTAACAAATCAGAAGTGG+AGG | + | chr8.2:6114332-6114351 | None:intergenic | 30.0% |
! | TTTTTACGCCTCATATACAT+AGG | + | chr8.2:6117342-6117361 | None:intergenic | 30.0% |
!! | AAAGAATTTGTTACGAGTAC+AGG | + | chr8.2:6116924-6116943 | None:intergenic | 30.0% |
!! | AATGTTTATGTTGGTTTGCT+TGG | - | chr8.2:6115282-6115301 | MS.gene070245:intron | 30.0% |
!! | GCAACTTCTTTTTGAAGATA+TGG | - | chr8.2:6115372-6115391 | MS.gene070245:intron | 30.0% |
!! | TTGGTTTGCTTGGTATATAT+TGG | - | chr8.2:6115348-6115367 | MS.gene070245:intron | 30.0% |
!!! | CTTACCCTATTTTTACACAA+AGG | + | chr8.2:6114389-6114408 | None:intergenic | 30.0% |
ACATTTAGTATACTCGAGAG+AGG | + | chr8.2:6117011-6117030 | None:intergenic | 35.0% | |
ACCAAAGAGAACCTATACAT+AGG | + | chr8.2:6115566-6115585 | None:intergenic | 35.0% | |
ACCCTGTATTACTACATGTT+CGG | - | chr8.2:6116848-6116867 | MS.gene070245:intron | 35.0% | |
ACCGAACATGTAGTAATACA+GGG | + | chr8.2:6116852-6116871 | None:intergenic | 35.0% | |
ACGCTGCATTATGATATTTG+TGG | - | chr8.2:6115053-6115072 | MS.gene070245:intron | 35.0% | |
ACTTATTTGAGCTTATCCAC+TGG | - | chr8.2:6117060-6117079 | MS.gene070245:intron | 35.0% | |
AGATGATGTACAATCATGGA+TGG | + | chr8.2:6116582-6116601 | None:intergenic | 35.0% | |
AGGAATGAGTGGTAAGAAAT+TGG | + | chr8.2:6117897-6117916 | None:intergenic | 35.0% | |
ATATTGAGCAGCTAGTATGT+TGG | + | chr8.2:6116742-6116761 | None:intergenic | 35.0% | |
ATCCAATAGCTTAATTGAGG+GGG | + | chr8.2:6114807-6114826 | None:intergenic | 35.0% | |
CATTTAGTATACTCGAGAGA+GGG | + | chr8.2:6117010-6117029 | None:intergenic | 35.0% | |
CCAACAATGAGTTCAAAACT+TGG | + | chr8.2:6118095-6118114 | None:intergenic | 35.0% | |
CGGTTAAATAGCAGTTATAG+TGG | + | chr8.2:6117773-6117792 | None:intergenic | 35.0% | |
CGTATACAAATAGCGTATCA+CGG | - | chr8.2:6117700-6117719 | MS.gene070245:intron | 35.0% | |
GACAAAAAAGTAACACGAGA+TGG | + | chr8.2:6115934-6115953 | None:intergenic | 35.0% | |
GATCACAAACTCAACAAAGT+TGG | + | chr8.2:6116325-6116344 | None:intergenic | 35.0% | |
GATGATGTACAATCATGGAT+GGG | + | chr8.2:6116581-6116600 | None:intergenic | 35.0% | |
GGCTGGTAAATATTATCAAC+TGG | + | chr8.2:6117465-6117484 | None:intergenic | 35.0% | |
GGTATTGTAGACTCAAACTT+AGG | - | chr8.2:6115639-6115658 | MS.gene070245:intron | 35.0% | |
TACCGAACATGTAGTAATAC+AGG | + | chr8.2:6116853-6116872 | None:intergenic | 35.0% | |
TCAAAAACGACATGTGTGAT+TGG | + | chr8.2:6113450-6113469 | None:intergenic | 35.0% | |
TCCTATGTATAGGTTCTCTT+TGG | - | chr8.2:6115562-6115581 | MS.gene070245:intron | 35.0% | |
TGCAGATAAATTGAAAGCTC+TGG | - | chr8.2:6113940-6113959 | MS.gene070245:intron | 35.0% | |
TTAACAACACAGTTTGAGCT+AGG | - | chr8.2:6117817-6117836 | MS.gene070245:CDS | 35.0% | |
TTCAAAAATTCCACGCAGAA+AGG | + | chr8.2:6115408-6115427 | None:intergenic | 35.0% | |
TTGAAAGAGAAGATATGCTG+CGG | - | chr8.2:6113755-6113774 | MS.gene070245:intron | 35.0% | |
! | AAGGTTTTTGTTGAAGAGAC+TGG | - | chr8.2:6113697-6113716 | MS.gene070245:intron | 35.0% |
! | ACGATACATTGATGATCAAC+AGG | - | chr8.2:6116367-6116386 | MS.gene070245:intron | 35.0% |
! | AGAACACAAATGCATTTTCC+TGG | - | chr8.2:6116257-6116276 | MS.gene070245:intron | 35.0% |
! | ATGATCTGCTGTTTGTAATG+GGG | - | chr8.2:6115484-6115503 | MS.gene070245:CDS | 35.0% |
! | CACATACTAAAGTACTTGCA+TGG | + | chr8.2:6115754-6115773 | None:intergenic | 35.0% |
! | CGATACATTGATGATCAACA+GGG | - | chr8.2:6116368-6116387 | MS.gene070245:intron | 35.0% |
! | CTGTAATTCTTCTTTTGCTC+TGG | - | chr8.2:6114965-6114984 | MS.gene070245:intron | 35.0% |
! | GATGATCTGCTGTTTGTAAT+GGG | - | chr8.2:6115483-6115502 | MS.gene070245:CDS | 35.0% |
! | GTCAGGTTTTCAAAATGTGT+CGG | + | chr8.2:6113895-6113914 | None:intergenic | 35.0% |
! | TGATGATCTGCTGTTTGTAA+TGG | - | chr8.2:6115482-6115501 | MS.gene070245:CDS | 35.0% |
! | TTGTTTGTTACACGTGTTGT+AGG | - | chr8.2:6118013-6118032 | MS.gene070245:intron | 35.0% |
! | TTTACACAAAGGTTGTTTCC+AGG | + | chr8.2:6114378-6114397 | None:intergenic | 35.0% |
! | TTTCACTGATTGTATTTGGC+TGG | + | chr8.2:6117482-6117501 | None:intergenic | 35.0% |
!! | AAGTTTTAATCTTGCGCACT+TGG | + | chr8.2:6115540-6115559 | None:intergenic | 35.0% |
!! | AGCTCTAAGGTTTCAATTTG+AGG | + | chr8.2:6115081-6115100 | None:intergenic | 35.0% |
!! | ATATACAGAGAAGTACTAGG+TGG | + | chr8.2:6115170-6115189 | None:intergenic | 35.0% |
!! | CTTATTTTCATAAGCTCTCC+AGG | - | chr8.2:6117153-6117172 | MS.gene070245:intron | 35.0% |
!! | GCCTGCTTTTCATTTGTAAT+AGG | - | chr8.2:6115837-6115856 | MS.gene070245:intron | 35.0% |
!! | GTTTGCCTTGTTTAACTTCA+GGG | + | chr8.2:6116141-6116160 | None:intergenic | 35.0% |
!!! | CCAAGTTTTGAACTCATTGT+TGG | - | chr8.2:6118092-6118111 | MS.gene070245:CDS | 35.0% |
AACACTTAGCGCATAGAAGA+TGG | + | chr8.2:6114129-6114148 | None:intergenic | 40.0% | |
AACTGAAAACGCAAAGACAC+GGG | - | chr8.2:6116074-6116093 | MS.gene070245:intron | 40.0% | |
AAGCACATGCAAGACTGTTT+GGG | - | chr8.2:6117086-6117105 | MS.gene070245:intron | 40.0% | |
AATAGCGTATCACGGAACAA+TGG | - | chr8.2:6117708-6117727 | MS.gene070245:intron | 40.0% | |
ACAGCTACATAACCGTTTGA+TGG | + | chr8.2:6114663-6114682 | None:intergenic | 40.0% | |
ACTACTGATAACCGCAACTA+AGG | - | chr8.2:6116631-6116650 | MS.gene070245:intron | 40.0% | |
AGAATATTACTCGGATCCAC+TGG | + | chr8.2:6116398-6116417 | None:intergenic | 40.0% | |
AGTTGCGGTTATCAGTAGTT+AGG | + | chr8.2:6116630-6116649 | None:intergenic | 40.0% | |
ATGTTGATATGGGGTCTGTT+TGG | - | chr8.2:6117033-6117052 | MS.gene070245:intron | 40.0% | |
CAAATTCCACTACGCTATAG+CGG | - | chr8.2:6117740-6117759 | MS.gene070245:intron | 40.0% | |
CAAGAAGGAACATGATCGAT+TGG | - | chr8.2:6114610-6114629 | MS.gene070245:intron | 40.0% | |
CAATCGATCATGTTCCTTCT+TGG | + | chr8.2:6114612-6114631 | None:intergenic | 40.0% | |
CATCCATGTTCTCCATCAAA+CGG | - | chr8.2:6114648-6114667 | MS.gene070245:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | - | chr8.2:6114413-6114432 | MS.gene070245:intron | 40.0% | |
CTCAAGCATCTACATGCAAA+AGG | - | chr8.2:6115873-6115892 | MS.gene070245:intron | 40.0% | |
CTGATGCATCATGTTGTTCT+TGG | - | chr8.2:6116109-6116128 | MS.gene070245:intron | 40.0% | |
GAACTGAAAACGCAAAGACA+CGG | - | chr8.2:6116073-6116092 | MS.gene070245:intron | 40.0% | |
GATGACCCTGAAGTTAAACA+AGG | - | chr8.2:6116133-6116152 | MS.gene070245:intron | 40.0% | |
GCAAGAAATACATCTGGTGA+TGG | + | chr8.2:6116163-6116182 | None:intergenic | 40.0% | |
GCTGTTCTCAAAAACTAACC+TGG | + | chr8.2:6117174-6117193 | None:intergenic | 40.0% | |
GCTTGTCACATTGAAAAGAC+AGG | - | chr8.2:6115716-6115735 | MS.gene070245:intron | 40.0% | |
GTGTTGTAGGTCTGTTGTTA+TGG | - | chr8.2:6118026-6118045 | MS.gene070245:intron | 40.0% | |
GTGTTGTCAATCACAGATAG+CGG | - | chr8.2:6117615-6117634 | MS.gene070245:intron | 40.0% | |
GTTGCGTACAATACACCAAA+TGG | - | chr8.2:6114409-6114428 | MS.gene070245:intron | 40.0% | |
TAACCGTTTGATGGAGAACA+TGG | + | chr8.2:6114654-6114673 | None:intergenic | 40.0% | |
TAAGCACATGCAAGACTGTT+TGG | - | chr8.2:6117085-6117104 | MS.gene070245:intron | 40.0% | |
TCCAATAGCTTAATTGAGGG+GGG | + | chr8.2:6114806-6114825 | None:intergenic | 40.0% | |
TGAAAAGATTTGTCCAGCCT+TGG | + | chr8.2:6118060-6118079 | None:intergenic | 40.0% | |
TGAAATTTACCCAGTTGCCA+CGG | + | chr8.2:6115910-6115929 | None:intergenic | 40.0% | |
TGACTTCAAAGCAAGCTCTA+AGG | + | chr8.2:6115094-6115113 | None:intergenic | 40.0% | |
TTACCTCCGTTTGAAGATGA+TGG | - | chr8.2:6118138-6118157 | MS.gene070245:CDS | 40.0% | |
TTGTTATGGTTCCTGATCCA+AGG | - | chr8.2:6118040-6118059 | MS.gene070245:intron | 40.0% | |
TTTCCATCATCTTCAAACGG+AGG | + | chr8.2:6118144-6118163 | None:intergenic | 40.0% | |
! | AACTTTTGAATGGCCTCTCA+AGG | - | chr8.2:6113639-6113658 | MS.gene070245:intron | 40.0% |
! | AAGGCTGGACAAATCTTTTC+AGG | - | chr8.2:6118059-6118078 | MS.gene070245:intron | 40.0% |
! | CCAAAGTGTTCAACTCAACA+AGG | + | chr8.2:6114852-6114871 | None:intergenic | 40.0% |
! | CCTGGTTTGAATTTAAGGCT+GGG | - | chr8.2:6116275-6116294 | MS.gene070245:intron | 40.0% |
! | CTTTTGCTCTGGTGAAATCT+TGG | - | chr8.2:6114976-6114995 | MS.gene070245:intron | 40.0% |
! | TACATTGATGATCAACAGGG+TGG | - | chr8.2:6116371-6116390 | MS.gene070245:intron | 40.0% |
! | TCCTGGTTTGAATTTAAGGC+TGG | - | chr8.2:6116274-6116293 | MS.gene070245:intron | 40.0% |
! | TTCTATTGGTGCCTTAGTTG+CGG | + | chr8.2:6116645-6116664 | None:intergenic | 40.0% |
! | TTTTCAGTATGCCTTCTGCA+GGG | + | chr8.2:6114196-6114215 | None:intergenic | 40.0% |
!! | AGAATAAAAAAAGGGCACCC+CGG | + | chr8.2:6114478-6114497 | None:intergenic | 40.0% |
!! | CCTTGTTGAGTTGAACACTT+TGG | - | chr8.2:6114849-6114868 | MS.gene070245:intron | 40.0% |
!! | GGTTTGCCTTGTTTAACTTC+AGG | + | chr8.2:6116142-6116161 | None:intergenic | 40.0% |
!!! | ATGTTCGTGTTTTCAAGTCC+TGG | - | chr8.2:6114357-6114376 | MS.gene070245:intron | 40.0% |
!!! | CACACATGTCGTTTTTGACA+TGG | - | chr8.2:6113452-6113471 | MS.gene070245:CDS | 40.0% |
!!! | CATGTCGTTTTTGACATGGA+CGG | - | chr8.2:6113456-6113475 | MS.gene070245:CDS | 40.0% |
AAAAGGAGTTCCAATTGCCG+TGG | - | chr8.2:6115890-6115909 | MS.gene070245:intron | 45.0% | |
ACTGAAAACGCAAAGACACG+GGG | - | chr8.2:6116075-6116094 | MS.gene070245:intron | 45.0% | |
ACTTGCGATCGAAGTTTGTC+AGG | + | chr8.2:6113912-6113931 | None:intergenic | 45.0% | |
AGATTCCACGCTTTCCAAGA+AGG | - | chr8.2:6114595-6114614 | MS.gene070245:intron | 45.0% | |
ATGTATTTCTTGCTGCAGCC+AGG | - | chr8.2:6116170-6116189 | MS.gene070245:intron | 45.0% | |
ATGTTCCTTCTTGGAAAGCG+TGG | + | chr8.2:6114603-6114622 | None:intergenic | 45.0% | |
CAAACTTCGATCGCAAGTGT+CGG | - | chr8.2:6113914-6113933 | MS.gene070245:intron | 45.0% | |
CAGTTATAGTGGCGCTATAC+CGG | + | chr8.2:6117762-6117781 | None:intergenic | 45.0% | |
CATCATAACCGAGTGTTCTG+AGG | + | chr8.2:6117861-6117880 | None:intergenic | 45.0% | |
CCCAGCCTTAAATTCAAACC+AGG | + | chr8.2:6116278-6116297 | None:intergenic | 45.0% | |
CCTCTCAAGGCAAAGATGAT+GGG | - | chr8.2:6113652-6113671 | MS.gene070245:intron | 45.0% | |
CTTGCATGTGCTTATACCAG+TGG | + | chr8.2:6117079-6117098 | None:intergenic | 45.0% | |
GAAAGCGATTGAAGCTGCTA+AGG | - | chr8.2:6113678-6113697 | MS.gene070245:intron | 45.0% | |
GAGGTAAACTCCACTCACTA+GGG | + | chr8.2:6118125-6118144 | None:intergenic | 45.0% | |
GCGTACAATACACCAAATGG+TGG | - | chr8.2:6114412-6114431 | MS.gene070245:intron | 45.0% | |
GCTGCAGCAAGAAATACATC+TGG | + | chr8.2:6116169-6116188 | None:intergenic | 45.0% | |
GTGTAGAATTCCTTTCTGCG+TGG | - | chr8.2:6115395-6115414 | MS.gene070245:CDS | 45.0% | |
TCCCCCCTCAATTAAGCTAT+TGG | - | chr8.2:6114802-6114821 | MS.gene070245:intron | 45.0% | |
TGATCAAGGTGAGGAATGAG+TGG | + | chr8.2:6117908-6117927 | None:intergenic | 45.0% | |
TGGATTTCAACCCTAGTGAG+TGG | - | chr8.2:6118112-6118131 | MS.gene070245:CDS | 45.0% | |
! | AATGTCGCTTGTGAGAACTG+TGG | + | chr8.2:6116051-6116070 | None:intergenic | 45.0% |
! | ATGTCGCTTGTGAGAACTGT+GGG | + | chr8.2:6116050-6116069 | None:intergenic | 45.0% |
! | CTTTTCAGTATGCCTTCTGC+AGG | + | chr8.2:6114197-6114216 | None:intergenic | 45.0% |
!! | GTTTTTGAAGATGCACCCTC+TGG | - | chr8.2:6116419-6116438 | MS.gene070245:intron | 45.0% |
!!! | GATTGGTTTTCTGACACCGA+CGG | + | chr8.2:6113433-6113452 | None:intergenic | 45.0% |
ACTAAAGCTTCCGCATACGC+AGG | + | chr8.2:6114452-6114471 | None:intergenic | 50.0% | |
AGCGTATCACGGAACAATGG+CGG | - | chr8.2:6117711-6117730 | MS.gene070245:intron | 50.0% | |
CCCATCATCTTTGCCTTGAG+AGG | + | chr8.2:6113655-6113674 | None:intergenic | 50.0% | |
CTAAAGCTTCCGCATACGCA+GGG | + | chr8.2:6114451-6114470 | None:intergenic | 50.0% | |
GATTTGTCCAGCCTTGGATC+AGG | + | chr8.2:6118054-6118073 | None:intergenic | 50.0% | |
GCCTCTCAAGGCAAAGATGA+TGG | - | chr8.2:6113651-6113670 | MS.gene070245:intron | 50.0% | |
GCTATACCGCTATAGCGTAG+TGG | + | chr8.2:6117749-6117768 | None:intergenic | 50.0% | |
GCTATAGCACTACTGCGTAG+TGG | + | chr8.2:6117653-6117672 | None:intergenic | 50.0% | |
GGAGGTAAACTCCACTCACT+AGG | + | chr8.2:6118126-6118145 | None:intergenic | 50.0% | |
GGGCTGTTGAATCCATTCCA+CGG | - | chr8.2:6117387-6117406 | MS.gene070245:intron | 50.0% | |
GTGTGTTGCCTCAGAACACT+CGG | - | chr8.2:6117850-6117869 | MS.gene070245:CDS | 50.0% | |
GTTCGTGCAGCTAAGAATGC+TGG | - | chr8.2:6116443-6116462 | MS.gene070245:intron | 50.0% | |
TATGGTTCCTGATCCAAGGC+TGG | - | chr8.2:6118044-6118063 | MS.gene070245:intron | 50.0% | |
TGAGGGGGGAAATCAATGAC+TGG | + | chr8.2:6114792-6114811 | None:intergenic | 50.0% | |
TTAGCTGCACGAACTCCAGA+GGG | + | chr8.2:6116437-6116456 | None:intergenic | 50.0% | |
TTCCAATTGCCGTGGCAACT+GGG | - | chr8.2:6115898-6115917 | MS.gene070245:intron | 50.0% | |
! | ATGCGGAAGCTTTAGTGCAC+CGG | - | chr8.2:6114456-6114475 | MS.gene070245:intron | 50.0% |
! | TGTCGCTTGTGAGAACTGTG+GGG | + | chr8.2:6116049-6116068 | None:intergenic | 50.0% |
!! | TGTCTTTGAGACCCTGCAGA+AGG | - | chr8.2:6114182-6114201 | MS.gene070245:intron | 50.0% |
ATGACCAATCCCTCCTCCGT+CGG | - | chr8.2:6113414-6113433 | MS.gene070245:CDS | 55.0% | |
CTTAGCTGCACGAACTCCAG+AGG | + | chr8.2:6116438-6116457 | None:intergenic | 55.0% | |
GACATGGACGGTCTCTTGCT+AGG | - | chr8.2:6113468-6113487 | MS.gene070245:CDS | 55.0% | |
GCGAGCTCATGCCAGGTAAA+TGG | - | chr8.2:6113794-6113813 | MS.gene070245:intron | 55.0% | |
GTTCCAATTGCCGTGGCAAC+TGG | - | chr8.2:6115897-6115916 | MS.gene070245:intron | 55.0% | |
TACCCAGTTGCCACGGCAAT+TGG | + | chr8.2:6115903-6115922 | None:intergenic | 55.0% | |
TGATCAACAGGGTGGACCAG+TGG | - | chr8.2:6116379-6116398 | MS.gene070245:intron | 55.0% | |
TGCTGCAGCCAGGAGATTTG+AGG | - | chr8.2:6116180-6116199 | MS.gene070245:intron | 55.0% | |
TTTCTGACACCGACGGAGGA+GGG | + | chr8.2:6113426-6113445 | None:intergenic | 55.0% | |
! | TGCGGAAGCTTTAGTGCACC+GGG | - | chr8.2:6114457-6114476 | MS.gene070245:intron | 55.0% |
! | TGGTTTTCTGACACCGACGG+AGG | + | chr8.2:6113430-6113449 | None:intergenic | 55.0% |
! | TTTTCTGACACCGACGGAGG+AGG | + | chr8.2:6113427-6113446 | None:intergenic | 55.0% |
CCAACAAGCGAGCTCATGCC+AGG | - | chr8.2:6113787-6113806 | MS.gene070245:intron | 60.0% | |
CCTGGCATGAGCTCGCTTGT+TGG | + | chr8.2:6113790-6113809 | None:intergenic | 60.0% | |
! | CCAAATGGTGGGACCCCTTC+CGG | - | chr8.2:6114424-6114443 | MS.gene070245:intron | 60.0% |
! | GCGGAAGCTTTAGTGCACCG+GGG | - | chr8.2:6114458-6114477 | MS.gene070245:intron | 60.0% |
CCGGAAGGGGTCCCACCATT+TGG | + | chr8.2:6114427-6114446 | None:intergenic | 65.0% | |
CCTTCCGGACCCTGCGTATG+CGG | - | chr8.2:6114439-6114458 | MS.gene070245:intron | 65.0% | |
CGCATACGCAGGGTCCGGAA+GGG | + | chr8.2:6114441-6114460 | None:intergenic | 65.0% | |
GACACCGACGGAGGAGGGAT+TGG | + | chr8.2:6113421-6113440 | None:intergenic | 65.0% | |
GCATACGCAGGGTCCGGAAG+GGG | + | chr8.2:6114440-6114459 | None:intergenic | 65.0% | |
GCTTCCGCATACGCAGGGTC+CGG | + | chr8.2:6114446-6114465 | None:intergenic | 65.0% | |
CCGCATACGCAGGGTCCGGA+AGG | + | chr8.2:6114442-6114461 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 6113414 | 6118167 | 6113414 | ID=MS.gene070245 |
chr8.2 | mRNA | 6113414 | 6118167 | 6113414 | ID=MS.gene070245.t1;Parent=MS.gene070245 |
chr8.2 | exon | 6118092 | 6118167 | 6118092 | ID=MS.gene070245.t1.exon1;Parent=MS.gene070245.t1 |
chr8.2 | CDS | 6118092 | 6118167 | 6118092 | ID=cds.MS.gene070245.t1;Parent=MS.gene070245.t1 |
chr8.2 | exon | 6117773 | 6117997 | 6117773 | ID=MS.gene070245.t1.exon2;Parent=MS.gene070245.t1 |
chr8.2 | CDS | 6117773 | 6117997 | 6117773 | ID=cds.MS.gene070245.t1;Parent=MS.gene070245.t1 |
chr8.2 | exon | 6115662 | 6115722 | 6115662 | ID=MS.gene070245.t1.exon3;Parent=MS.gene070245.t1 |
chr8.2 | CDS | 6115662 | 6115722 | 6115662 | ID=cds.MS.gene070245.t1;Parent=MS.gene070245.t1 |
chr8.2 | exon | 6115380 | 6115527 | 6115380 | ID=MS.gene070245.t1.exon4;Parent=MS.gene070245.t1 |
chr8.2 | CDS | 6115380 | 6115527 | 6115380 | ID=cds.MS.gene070245.t1;Parent=MS.gene070245.t1 |
chr8.2 | exon | 6115113 | 6115192 | 6115113 | ID=MS.gene070245.t1.exon5;Parent=MS.gene070245.t1 |
chr8.2 | CDS | 6115113 | 6115192 | 6115113 | ID=cds.MS.gene070245.t1;Parent=MS.gene070245.t1 |
chr8.2 | exon | 6113414 | 6113546 | 6113414 | ID=MS.gene070245.t1.exon6;Parent=MS.gene070245.t1 |
chr8.2 | CDS | 6113414 | 6113546 | 6113414 | ID=cds.MS.gene070245.t1;Parent=MS.gene070245.t1 |
Gene Sequence |
Protein sequence |