Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070309.t1 | KEH34139.1 | 71.4 | 126 | 26 | 2 | 6 | 131 | 5 | 120 | 2.80E-36 | 162.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070309.t1 | A0A072UWC0 | 71.4 | 126 | 26 | 2 | 6 | 131 | 5 | 120 | 2.1e-36 | 162.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05676 | MS.gene070309 | 0.892621 | 1.34E-74 | -1.69E-46 |
| MS.gene05678 | MS.gene070309 | 0.923843 | 1.56E-89 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070309.t1 | MTR_3g462080 | 71.429 | 126 | 26 | 2 | 6 | 131 | 5 | 120 | 1.03e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3.3:+48627489 | MS.gene070309:CDS |
| CAAGATCCTGCTATGGTTAA+TGG | 0.249869 | 3.3:+48627348 | MS.gene070309:CDS |
| TTCGCCGGCTTTCTACAATA+TGG | 0.300260 | 3.3:+48626208 | MS.gene070309:CDS |
| CCATGGCAGGATCTTGTTGC+TGG | 0.326139 | 3.3:-48627482 | None:intergenic |
| GTAAAGGTCTCCCTCAATTC+TGG | 0.339441 | 3.3:-48626139 | None:intergenic |
| GGAGTTCGTGATCTCGTGTT+AGG | 0.342593 | 3.3:+48625986 | MS.gene070309:CDS |
| ATTTCCAGATGGGGTTGATC+AGG | 0.345391 | 3.3:+48625939 | None:intergenic |
| CAAGATCCTGCCATGGTTAG+AGG | 0.369769 | 3.3:+48627621 | MS.gene070309:CDS |
| AACATGACTGGATGCAGAAT+TGG | 0.372606 | 3.3:-48626293 | None:intergenic |
| GGTGATCCTGTGGGTGGGGA+GGG | 0.417073 | 3.3:+48626040 | MS.gene070309:CDS |
| GAGTTCGTGATCTCGTGTTA+GGG | 0.419998 | 3.3:+48625987 | MS.gene070309:CDS |
| TAATAATATGCTTCAGACCT+TGG | 0.421796 | 3.3:-48627242 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3.3:-48627429 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3.3:-48627570 | None:intergenic |
| TGGTGATCCTGTGGGTGGGG+AGG | 0.444601 | 3.3:+48626039 | MS.gene070309:CDS |
| AAAATTGCTTGAACAAGAAC+AGG | 0.450880 | 3.3:-48627288 | None:intergenic |
| TGGATGCAGAATTGGAGGTT+TGG | 0.458114 | 3.3:-48626285 | None:intergenic |
| GCAAAACAGCGAAAATTGCT+TGG | 0.458662 | 3.3:-48627440 | None:intergenic |
| AGTTGGTGATCCTGTGGGTG+GGG | 0.460598 | 3.3:+48626036 | MS.gene070309:CDS |
| CCTGCCATGGTTAGAGGTGG+TGG | 0.461107 | 3.3:+48627627 | MS.gene070309:CDS |
| TGTATTCTCACCAGAATTGA+GGG | 0.462402 | 3.3:+48626129 | MS.gene070309:CDS |
| CATGGTGGTGGTCAAGGCCA+AGG | 0.464746 | 3.3:+48627225 | MS.gene070309:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3.3:+48627371 | MS.gene070309:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3.3:+48627512 | MS.gene070309:CDS |
| ACAAAACAGCGAAAATTGCT+TGG | 0.469717 | 3.3:-48627581 | None:intergenic |
| TTGTATTCTCACCAGAATTG+AGG | 0.473027 | 3.3:+48626128 | MS.gene070309:CDS |
| CTCGAACCAACGACGAGTAA+AGG | 0.476388 | 3.3:-48626155 | None:intergenic |
| TCAATTCTGGTGAGAATACA+AGG | 0.478438 | 3.3:-48626126 | None:intergenic |
| TTAGGGGACGTCGAGAATAG+AGG | 0.481029 | 3.3:+48626004 | MS.gene070309:CDS |
| GGCTTTCTACAATATGGACT+TGG | 0.483908 | 3.3:+48626214 | MS.gene070309:CDS |
| TTGACTCCCTCCCCACCCAC+AGG | 0.489684 | 3.3:-48626046 | None:intergenic |
| AGTAGAAGCACCAACATGAC+TGG | 0.491047 | 3.3:-48626305 | None:intergenic |
| ATTTCTCGTGTGATTACAAA+GGG | 0.491932 | 3.3:-48626082 | None:intergenic |
| GAGTTGGTGATCCTGTGGGT+GGG | 0.495774 | 3.3:+48626035 | MS.gene070309:CDS |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3.3:-48627383 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3.3:-48627524 | None:intergenic |
| TGTGGGTGGGGAGGGAGTCA+AGG | 0.498809 | 3.3:+48626048 | MS.gene070309:CDS |
| GGAGTTGGTGATCCTGTGGG+TGG | 0.499218 | 3.3:+48626034 | MS.gene070309:CDS |
| AATAGAGGTGGGAATGGAGT+TGG | 0.503425 | 3.3:+48626019 | MS.gene070309:CDS |
| CAAAACAGCGAAAATTGCTT+GGG | 0.509904 | 3.3:-48627439 | None:intergenic |
| GGAGTTGGTGATATCGAGGA+TGG | 0.511833 | 3.3:+48625965 | MS.gene070309:CDS |
| ACTCGTCGTTGGTTCGAGAA+GGG | 0.512022 | 3.3:+48626160 | MS.gene070309:CDS |
| GTCGAGAATAGAGGTGGGAA+TGG | 0.515982 | 3.3:+48626013 | MS.gene070309:CDS |
| TACTCGTCGTTGGTTCGAGA+AGG | 0.523814 | 3.3:+48626159 | MS.gene070309:CDS |
| CAAAACAGCGAAAATTGCTT+GGG | 0.524048 | 3.3:-48627580 | None:intergenic |
| GAATGGAGTTGGTGATCCTG+TGG | 0.526513 | 3.3:+48626030 | MS.gene070309:CDS |
| CAGATGGGGTTGATCAGGGA+TGG | 0.526606 | 3.3:+48625944 | None:intergenic |
| TGTAGAAAGCCGGCGAATGA+AGG | 0.529310 | 3.3:-48626202 | None:intergenic |
| ATGACTGGATGCAGAATTGG+AGG | 0.532457 | 3.3:-48626290 | None:intergenic |
| GGTAGTCCACCTTCATTCGC+CGG | 0.536376 | 3.3:+48626193 | MS.gene070309:CDS |
| AATGGAGTTGGTGATCCTGT+GGG | 0.538298 | 3.3:+48626031 | MS.gene070309:CDS |
| GGGAGACCTTTACTCGTCGT+TGG | 0.542180 | 3.3:+48626149 | MS.gene070309:CDS |
| TTTCCAGATGGGGTTGATCA+GGG | 0.545091 | 3.3:+48625940 | None:intergenic |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3.3:+48627366 | MS.gene070309:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3.3:+48627507 | MS.gene070309:CDS |
| CCACCACCTCTAACCATGGC+AGG | 0.556722 | 3.3:-48627627 | None:intergenic |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3.3:+48627360 | MS.gene070309:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3.3:+48627501 | MS.gene070309:CDS |
| CCACCACCATTAACCATAGC+AGG | 0.561187 | 3.3:-48627354 | None:intergenic |
| TTGTAATCACACGAGAAATG+AGG | 0.564368 | 3.3:+48626086 | MS.gene070309:CDS |
| CCACCACCATTAACCATGGC+AGG | 0.568848 | 3.3:-48627495 | None:intergenic |
| CATTTCTCGTGTGATTACAA+AGG | 0.568855 | 3.3:-48626083 | None:intergenic |
| AATTCTGCATCCAGTCATGT+TGG | 0.571897 | 3.3:+48626295 | MS.gene070309:CDS |
| CCTGCTATGGTTAATGGTGG+TGG | 0.573689 | 3.3:+48627354 | MS.gene070309:CDS |
| TTTCTACAATATGGACTTGG+TGG | 0.573737 | 3.3:+48626217 | MS.gene070309:CDS |
| CCTGCCATGGTTAATGGTGG+TGG | 0.576171 | 3.3:+48627495 | MS.gene070309:CDS |
| AAGTCCATATTGTAGAAAGC+CGG | 0.581536 | 3.3:-48626212 | None:intergenic |
| TTCGAGAAGGGAATGGAAGG+TGG | 0.586763 | 3.3:+48626172 | MS.gene070309:CDS |
| GGGTTGATCAGGGATGGAGT+TGG | 0.589298 | 3.3:+48625950 | MS.gene070309:CDS |
| TGTAATCACACGAGAAATGA+GGG | 0.592115 | 3.3:+48626087 | MS.gene070309:CDS |
| TGGTTCGAGAAGGGAATGGA+AGG | 0.592500 | 3.3:+48626169 | MS.gene070309:CDS |
| TGCTCCACCACCTCTAACCA+TGG | 0.592892 | 3.3:-48627631 | None:intergenic |
| TCAGCAACAAGATCCTGCTA+TGG | 0.595166 | 3.3:+48627341 | MS.gene070309:CDS |
| AAATCAACATGGGTTTGTGA+TGG | 0.600368 | 3.3:+48627653 | MS.gene070309:CDS |
| GGTGGTGGAGCAAATCAACA+TGG | 0.602971 | 3.3:+48627642 | MS.gene070309:CDS |
| AGAAAGCCGGCGAATGAAGG+TGG | 0.603444 | 3.3:-48626199 | None:intergenic |
| TCGTTGGTTCGAGAAGGGAA+TGG | 0.610158 | 3.3:+48626165 | MS.gene070309:CDS |
| TCACACGAGAAATGAGGGTG+AGG | 0.612130 | 3.3:+48626092 | MS.gene070309:CDS |
| GGGGACGTCGAGAATAGAGG+TGG | 0.627330 | 3.3:+48626007 | MS.gene070309:CDS |
| GGATGGAGTTGGTGATATCG+AGG | 0.651118 | 3.3:+48625961 | MS.gene070309:CDS |
| TCTGGTGAGAATACAAGGGG+AGG | 0.658186 | 3.3:-48626121 | None:intergenic |
| TCAGCAACAAGATCCTGCCA+TGG | 0.666632 | 3.3:+48627614 | MS.gene070309:CDS |
| CCAGCAACAAGATCCTGCCA+TGG | 0.666762 | 3.3:+48627482 | MS.gene070309:CDS |
| AATTCTGGTGAGAATACAAG+GGG | 0.669558 | 3.3:-48626124 | None:intergenic |
| GATCCTGCCATGGTTAGAGG+TGG | 0.669655 | 3.3:+48627624 | MS.gene070309:CDS |
| TTGACCACCACCATTAACCA+TGG | 0.670727 | 3.3:-48627499 | None:intergenic |
| AGTTCGTGATCTCGTGTTAG+GGG | 0.674252 | 3.3:+48625988 | MS.gene070309:CDS |
| CAATTCTGGTGAGAATACAA+GGG | 0.682451 | 3.3:-48626125 | None:intergenic |
| GGGACGTCGAGAATAGAGGT+GGG | 0.689525 | 3.3:+48626008 | MS.gene070309:CDS |
| GTGGTGGAGCAAATCAACAT+GGG | 0.702201 | 3.3:+48627643 | MS.gene070309:CDS |
| GATCCTGCTATGGTTAATGG+TGG | 0.728334 | 3.3:+48627351 | MS.gene070309:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3.3:+48627492 | MS.gene070309:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATGTTGACAAAATTTAAT+TGG | + | chr3.3:48626536-48626555 | MS.gene070309:intron | 20.0% |
| !! | TCTATTTGTGTGATTATTAT+TGG | + | chr3.3:48626512-48626531 | MS.gene070309:intron | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | chr3.3:48627194-48627213 | MS.gene070309:intron | 20.0% |
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | chr3.3:48626908-48626927 | None:intergenic | 20.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | chr3.3:48627181-48627200 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | chr3.3:48627180-48627199 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | - | chr3.3:48627163-48627182 | None:intergenic | 25.0% |
| ! | GACTTTACTTCAAATTGAAA+GGG | - | chr3.3:48627104-48627123 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTCAAAAT+CGG | - | chr3.3:48627127-48627146 | None:intergenic | 25.0% |
| ! | TCCAAAATAAGCAAAATACA+TGG | + | chr3.3:48626976-48626995 | MS.gene070309:intron | 25.0% |
| !! | GCATTTTCAACATATAGTAT+AGG | + | chr3.3:48626618-48626637 | MS.gene070309:intron | 25.0% |
| !! | TCCATGTATTTTGCTTATTT+TGG | - | chr3.3:48626980-48626999 | None:intergenic | 25.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | chr3.3:48626907-48626926 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | chr3.3:48627140-48627159 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | chr3.3:48627207-48627226 | MS.gene070309:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | chr3.3:48627060-48627079 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | chr3.3:48627291-48627310 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTCAAAATC+GGG | - | chr3.3:48627126-48627145 | None:intergenic | 30.0% | |
| ATTTCTCGTGTGATTACAAA+GGG | - | chr3.3:48626085-48626104 | None:intergenic | 30.0% | |
| CTGTGTTTAATCAAGTCTAA+TGG | - | chr3.3:48626451-48626470 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | - | chr3.3:48627164-48627183 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | - | chr3.3:48627162-48627181 | None:intergenic | 30.0% | |
| GGACTTTACTTCAAATTGAA+AGG | - | chr3.3:48627105-48627124 | None:intergenic | 30.0% | |
| TAATAATATGCTTCAGACCT+TGG | - | chr3.3:48627245-48627264 | None:intergenic | 30.0% | |
| TTAATCAAGTCTAATGGAAG+CGG | - | chr3.3:48626445-48626464 | None:intergenic | 30.0% | |
| ! | AAACTCTCTTGTTTAGAGTT+TGG | + | chr3.3:48626648-48626667 | MS.gene070309:intron | 30.0% |
| !!! | CTTATTTTGGAATTCCACTA+TGG | - | chr3.3:48626967-48626986 | None:intergenic | 30.0% |
| !!! | GCTATAGATTGTTTTAATCG+AGG | + | chr3.3:48626253-48626272 | MS.gene070309:CDS | 30.0% |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | chr3.3:48627210-48627229 | MS.gene070309:intron | 30.0% |
| AAATCAACATGGGTTTGTGA+TGG | + | chr3.3:48627653-48627672 | MS.gene070309:CDS | 35.0% | |
| AAGTCCATATTGTAGAAAGC+CGG | - | chr3.3:48626215-48626234 | None:intergenic | 35.0% | |
| AATTCTGGTGAGAATACAAG+GGG | - | chr3.3:48626127-48626146 | None:intergenic | 35.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | chr3.3:48626837-48626856 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | chr3.3:48627584-48627603 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3.3:48627442-48627461 | None:intergenic | 35.0% | |
| CAATTCTGGTGAGAATACAA+GGG | - | chr3.3:48626128-48626147 | None:intergenic | 35.0% | |
| CATTTCTCGTGTGATTACAA+AGG | - | chr3.3:48626086-48626105 | None:intergenic | 35.0% | |
| GTCCATTATTCAATCAGTAG+TGG | - | chr3.3:48626352-48626371 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3.3:48627386-48627405 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | chr3.3:48626836-48626855 | MS.gene070309:intron | 35.0% | |
| TCAATTCTGGTGAGAATACA+AGG | - | chr3.3:48626129-48626148 | None:intergenic | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | chr3.3:48626927-48626946 | None:intergenic | 35.0% | |
| TGTAATCACACGAGAAATGA+GGG | + | chr3.3:48626087-48626106 | MS.gene070309:CDS | 35.0% | |
| TGTATTCTCACCAGAATTGA+GGG | + | chr3.3:48626129-48626148 | MS.gene070309:CDS | 35.0% | |
| TTGTAATCACACGAGAAATG+AGG | + | chr3.3:48626086-48626105 | MS.gene070309:CDS | 35.0% | |
| TTGTATTCTCACCAGAATTG+AGG | + | chr3.3:48626128-48626147 | MS.gene070309:CDS | 35.0% | |
| TTTCTACAATATGGACTTGG+TGG | + | chr3.3:48626217-48626236 | MS.gene070309:CDS | 35.0% | |
| ! | CTCTTGTTTAGAGTTTGGAT+TGG | + | chr3.3:48626653-48626672 | MS.gene070309:intron | 35.0% |
| ! | TGCCACTACTGATTGAATAA+TGG | + | chr3.3:48626347-48626366 | MS.gene070309:intron | 35.0% |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3.3:48627432-48627451 | None:intergenic | 40.0% | |
| AACATGACTGGATGCAGAAT+TGG | - | chr3.3:48626296-48626315 | None:intergenic | 40.0% | |
| AATTCTGCATCCAGTCATGT+TGG | + | chr3.3:48626295-48626314 | MS.gene070309:CDS | 40.0% | |
| CAAGATCCTGCTATGGTTAA+TGG | + | chr3.3:48627348-48627367 | MS.gene070309:CDS | 40.0% | |
| CTATGGATTTGAGTCCTTGA+AGG | - | chr3.3:48626950-48626969 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | chr3.3:48627443-48627462 | None:intergenic | 40.0% | |
| GGCTTTCTACAATATGGACT+TGG | + | chr3.3:48626214-48626233 | MS.gene070309:CDS | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | + | chr3.3:48626950-48626969 | MS.gene070309:intron | 40.0% | |
| TGAAAGGGAATAGCAAAACC+TGG | - | chr3.3:48627089-48627108 | None:intergenic | 40.0% | |
| ! | GCTTTCAGGTAATAAGGAAG+AGG | + | chr3.3:48626691-48626710 | MS.gene070309:intron | 40.0% |
| !! | GAGAGTGCTTTCAGGTAATA+AGG | + | chr3.3:48626685-48626704 | MS.gene070309:intron | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | chr3.3:48627307-48627326 | MS.gene070309:CDS | 40.0% |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | chr3.3:48627336-48627355 | None:intergenic | 40.0% |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | chr3.3:48627213-48627232 | MS.gene070309:intron | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | chr3.3:48627324-48627343 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | chr3.3:48627327-48627346 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGGAAGCCCACGA+TGG | + | chr3.3:48626770-48626789 | MS.gene070309:intron | 40.0% |
| AATAGAGGTGGGAATGGAGT+TGG | + | chr3.3:48626019-48626038 | MS.gene070309:CDS | 45.0% | |
| AGTTCGTGATCTCGTGTTAG+GGG | + | chr3.3:48625988-48626007 | MS.gene070309:CDS | 45.0% | |
| ATCAAGTCTAATGGAAGCGG+AGG | - | chr3.3:48626442-48626461 | None:intergenic | 45.0% | |
| ATGACTGGATGCAGAATTGG+AGG | - | chr3.3:48626293-48626312 | None:intergenic | 45.0% | |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3.3:48627489-48627508 | MS.gene070309:CDS | 45.0% | |
| GAGTTCGTGATCTCGTGTTA+GGG | + | chr3.3:48625987-48626006 | MS.gene070309:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | chr3.3:48627351-48627370 | MS.gene070309:CDS | 45.0% | |
| GTAAAGGTCTCCCTCAATTC+TGG | - | chr3.3:48626142-48626161 | None:intergenic | 45.0% | |
| TCAGCAACAAGATCCTGCTA+TGG | + | chr3.3:48627341-48627360 | MS.gene070309:CDS | 45.0% | |
| TGCGACTTTCTTCACCTTCA+AGG | + | chr3.3:48626933-48626952 | MS.gene070309:intron | 45.0% | |
| TGGATGCAGAATTGGAGGTT+TGG | - | chr3.3:48626288-48626307 | None:intergenic | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | chr3.3:48627361-48627380 | None:intergenic | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | chr3.3:48627068-48627087 | MS.gene070309:intron | 45.0% |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | chr3.3:48627643-48627662 | MS.gene070309:CDS | 45.0% |
| !! | AATGGAGTTGGTGATCCTGT+GGG | + | chr3.3:48626031-48626050 | MS.gene070309:CDS | 45.0% |
| !! | AGTAGAAGCACCAACATGAC+TGG | - | chr3.3:48626308-48626327 | None:intergenic | 45.0% |
| !! | AGTTGTGAGAGAGTGCTTTC+AGG | + | chr3.3:48626677-48626696 | MS.gene070309:intron | 45.0% |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3.3:48627360-48627379 | MS.gene070309:CDS | 45.0% |
| !! | TTCGCCGGCTTTCTACAATA+TGG | + | chr3.3:48626208-48626227 | MS.gene070309:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | chr3.3:48627448-48627467 | MS.gene070309:CDS | 45.0% |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | chr3.3:48627219-48627238 | MS.gene070309:CDS | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | chr3.3:48627477-48627496 | None:intergenic | 45.0% |
| !!! | AAATTTTTCTATTTTTTTTT+TGG | + | chr3.3:48626757-48626776 | MS.gene070309:intron | 5.0% |
| CAAGATCCTGCCATGGTTAG+AGG | + | chr3.3:48627621-48627640 | MS.gene070309:CDS | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | chr3.3:48627357-48627376 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | chr3.3:48627354-48627373 | MS.gene070309:CDS | 50.0% | |
| CTCGAACCAACGACGAGTAA+AGG | - | chr3.3:48626158-48626177 | None:intergenic | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3.3:48627492-48627511 | MS.gene070309:CDS | 50.0% | |
| GGAGTTCGTGATCTCGTGTT+AGG | + | chr3.3:48625986-48626005 | MS.gene070309:CDS | 50.0% | |
| GTCGAGAATAGAGGTGGGAA+TGG | + | chr3.3:48626013-48626032 | MS.gene070309:CDS | 50.0% | |
| TCACACGAGAAATGAGGGTG+AGG | + | chr3.3:48626092-48626111 | MS.gene070309:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | chr3.3:48627614-48627633 | MS.gene070309:CDS | 50.0% | |
| TCTGGTGAGAATACAAGGGG+AGG | - | chr3.3:48626124-48626143 | None:intergenic | 50.0% | |
| TGGTTCGAGAAGGGAATGGA+AGG | + | chr3.3:48626169-48626188 | MS.gene070309:CDS | 50.0% | |
| TGTAGAAAGCCGGCGAATGA+AGG | - | chr3.3:48626205-48626224 | None:intergenic | 50.0% | |
| TTAGGGGACGTCGAGAATAG+AGG | + | chr3.3:48626004-48626023 | MS.gene070309:CDS | 50.0% | |
| TTCGAGAAGGGAATGGAAGG+TGG | + | chr3.3:48626172-48626191 | MS.gene070309:CDS | 50.0% | |
| TTGAACCTGTGCTTGAGCAG+CGG | - | chr3.3:48626811-48626830 | None:intergenic | 50.0% | |
| !! | ACTCGTCGTTGGTTCGAGAA+GGG | + | chr3.3:48626160-48626179 | MS.gene070309:CDS | 50.0% |
| !! | GAATGGAGTTGGTGATCCTG+TGG | + | chr3.3:48626030-48626049 | MS.gene070309:CDS | 50.0% |
| !! | GGAGTTGGTGATATCGAGGA+TGG | + | chr3.3:48625965-48625984 | MS.gene070309:CDS | 50.0% |
| !! | GGATGGAGTTGGTGATATCG+AGG | + | chr3.3:48625961-48625980 | MS.gene070309:CDS | 50.0% |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | chr3.3:48627642-48627661 | MS.gene070309:CDS | 50.0% |
| !! | TACTCGTCGTTGGTTCGAGA+AGG | + | chr3.3:48626159-48626178 | MS.gene070309:CDS | 50.0% |
| !! | TCGTTGGTTCGAGAAGGGAA+TGG | + | chr3.3:48626165-48626184 | MS.gene070309:CDS | 50.0% |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | chr3.3:48627465-48627484 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | chr3.3:48627468-48627487 | None:intergenic | 50.0% |
| AGAAAGCCGGCGAATGAAGG+TGG | - | chr3.3:48626202-48626221 | None:intergenic | 55.0% | |
| CCACCACCATTAACCATGGC+AGG | - | chr3.3:48627498-48627517 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | chr3.3:48627482-48627501 | MS.gene070309:CDS | 55.0% | |
| CCATGGCAGGATCTTGTTGC+TGG | - | chr3.3:48627485-48627504 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3.3:48627495-48627514 | MS.gene070309:CDS | 55.0% | |
| GATCCTGCCATGGTTAGAGG+TGG | + | chr3.3:48627624-48627643 | MS.gene070309:CDS | 55.0% | |
| GGGACGTCGAGAATAGAGGT+GGG | + | chr3.3:48626008-48626027 | MS.gene070309:CDS | 55.0% | |
| GGGAGACCTTTACTCGTCGT+TGG | + | chr3.3:48626149-48626168 | MS.gene070309:CDS | 55.0% | |
| GGTAGTCCACCTTCATTCGC+CGG | + | chr3.3:48626193-48626212 | MS.gene070309:CDS | 55.0% | |
| TGCTCCACCACCTCTAACCA+TGG | - | chr3.3:48627634-48627653 | None:intergenic | 55.0% | |
| TTGGAAGCCCACGATGGATG+CGG | + | chr3.3:48626776-48626795 | MS.gene070309:intron | 55.0% | |
| ! | GGGTTGATCAGGGATGGAGT+TGG | + | chr3.3:48625950-48625969 | MS.gene070309:CDS | 55.0% |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3.3:48627366-48627385 | MS.gene070309:CDS | 55.0% |
| !! | AGTTGGTGATCCTGTGGGTG+GGG | + | chr3.3:48626036-48626055 | MS.gene070309:CDS | 55.0% |
| !! | GAGTTGGTGATCCTGTGGGT+GGG | + | chr3.3:48626035-48626054 | MS.gene070309:CDS | 55.0% |
| CCACCACCTCTAACCATGGC+AGG | - | chr3.3:48627630-48627649 | None:intergenic | 60.0% | |
| CCTGCCATGGTTAGAGGTGG+TGG | + | chr3.3:48627627-48627646 | MS.gene070309:CDS | 60.0% | |
| GGGGACGTCGAGAATAGAGG+TGG | + | chr3.3:48626007-48626026 | MS.gene070309:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3.3:48627230-48627249 | MS.gene070309:CDS | 60.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | chr3.3:48627225-48627244 | MS.gene070309:CDS | 60.0% |
| !! | GGAGTTGGTGATCCTGTGGG+TGG | + | chr3.3:48626034-48626053 | MS.gene070309:CDS | 60.0% |
| AGTGGCAGCCGCATCCATCG+TGG | - | chr3.3:48626787-48626806 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | + | chr3.3:48626803-48626822 | MS.gene070309:intron | 65.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | chr3.3:48626805-48626824 | None:intergenic | 65.0% | |
| GGTGATCCTGTGGGTGGGGA+GGG | + | chr3.3:48626040-48626059 | MS.gene070309:CDS | 65.0% | |
| GTGGCAGCCGCATCCATCGT+GGG | - | chr3.3:48626786-48626805 | None:intergenic | 65.0% | |
| TGGTGATCCTGTGGGTGGGG+AGG | + | chr3.3:48626039-48626058 | MS.gene070309:CDS | 65.0% | |
| TGTGGGTGGGGAGGGAGTCA+AGG | + | chr3.3:48626048-48626067 | MS.gene070309:CDS | 65.0% | |
| TTGACTCCCTCCCCACCCAC+AGG | - | chr3.3:48626049-48626068 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48625947 | 48627686 | 48625947 | ID=MS.gene070309 |
| chr3.3 | mRNA | 48625947 | 48627686 | 48625947 | ID=MS.gene070309.t1;Parent=MS.gene070309 |
| chr3.3 | exon | 48625947 | 48626345 | 48625947 | ID=MS.gene070309.t1.exon1;Parent=MS.gene070309.t1 |
| chr3.3 | CDS | 48625947 | 48626345 | 48625947 | ID=cds.MS.gene070309.t1;Parent=MS.gene070309.t1 |
| chr3.3 | exon | 48627216 | 48627686 | 48627216 | ID=MS.gene070309.t1.exon2;Parent=MS.gene070309.t1 |
| chr3.3 | CDS | 48627216 | 48627686 | 48627216 | ID=cds.MS.gene070309.t1;Parent=MS.gene070309.t1 |
| Gene Sequence |
| Protein sequence |
