Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05676.t1 | KEH34139.1 | 73.5 | 117 | 21 | 2 | 6 | 122 | 5 | 111 | 1.80E-35 | 159.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05676.t1 | A0A072UWC0 | 73.5 | 117 | 21 | 2 | 6 | 122 | 5 | 111 | 1.3e-35 | 159.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05669 | MS.gene05676 | 0.843187 | 1.63E-58 | -1.69E-46 |
| MS.gene05676 | MS.gene05678 | 0.951442 | 2.03E-109 | -1.69E-46 |
| MS.gene05676 | MS.gene070309 | 0.892621 | 1.34E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05676.t1 | MTR_3g462080 | 73.504 | 117 | 21 | 2 | 6 | 122 | 5 | 111 | 1.87e-50 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3.2:+51552744 | MS.gene05676:CDS |
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3.2:+51552876 | MS.gene05676:CDS |
| TTCGCCTGCTTTCTACAATA+TGG | 0.246148 | 3.2:+51551459 | MS.gene05676:CDS |
| CAAGATCCTGCTATGGTTAA+TGG | 0.249869 | 3.2:+51552603 | MS.gene05676:CDS |
| CCATGGCAGGATCTTGTTGC+TGG | 0.326139 | 3.2:-51552737 | None:intergenic |
| GTAAAGGTCTCCCTCAATTC+TGG | 0.339441 | 3.2:-51551390 | None:intergenic |
| ATTTCCAGATGGGGTTGATC+AGG | 0.345391 | 3.2:+51551190 | None:intergenic |
| GGAGTTCGTGATCTCGTGTT+AGG | 0.367714 | 3.2:+51551237 | MS.gene05676:CDS |
| AACATGACTGGATGCAGAAT+TGG | 0.372606 | 3.2:-51551544 | None:intergenic |
| GGTGATCCTGTGGGTGGGGA+TGG | 0.412104 | 3.2:+51551291 | MS.gene05676:CDS |
| TAATAATATGCTTCAGACCT+TGG | 0.421796 | 3.2:-51552497 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3.2:-51552684 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3.2:-51552825 | None:intergenic |
| GAGTTCGTGATCTCGTGTTA+GGG | 0.436257 | 3.2:+51551238 | MS.gene05676:CDS |
| AAAATTGCTTGAACAAGAAC+AGG | 0.450880 | 3.2:-51552543 | None:intergenic |
| TGGATGCAGAATTGGAGGTT+TGG | 0.458114 | 3.2:-51551536 | None:intergenic |
| GCAAAACAGCGAAAATTGCT+TGG | 0.458662 | 3.2:-51552695 | None:intergenic |
| CATGGTGGTGGTCAAGGCCA+AGG | 0.464746 | 3.2:+51552480 | MS.gene05676:CDS |
| AGTTGGTGATCCTGTGGGTG+GGG | 0.466475 | 3.2:+51551287 | MS.gene05676:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3.2:+51552626 | MS.gene05676:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3.2:+51552767 | MS.gene05676:CDS |
| ACAAAACAGCGAAAATTGCT+TGG | 0.469717 | 3.2:-51552836 | None:intergenic |
| CGTATTCTCACCAGAATTGA+GGG | 0.471759 | 3.2:+51551380 | MS.gene05676:CDS |
| TGCTTTCTACAATATGGACT+TGG | 0.475892 | 3.2:+51551465 | MS.gene05676:CDS |
| CTCGAACCAACGACGAGTAA+AGG | 0.476388 | 3.2:-51551406 | None:intergenic |
| TTAGGGGACGTCGAGAATAG+AGG | 0.481029 | 3.2:+51551255 | MS.gene05676:CDS |
| AGTAGAAGCACCAACATGAC+TGG | 0.491047 | 3.2:-51551556 | None:intergenic |
| ATTTCTCGTGTGATTACAAA+GGG | 0.491932 | 3.2:-51551333 | None:intergenic |
| GAGTTGGTGATCCTGTGGGT+GGG | 0.492123 | 3.2:+51551286 | MS.gene05676:CDS |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3.2:-51552638 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3.2:-51552779 | None:intergenic |
| GGAGTTGGTGATCCTGTGGG+TGG | 0.499218 | 3.2:+51551285 | MS.gene05676:CDS |
| AATAGAGGTGGGAATGGAGT+TGG | 0.503425 | 3.2:+51551270 | MS.gene05676:CDS |
| TCGTATTCTCACCAGAATTG+AGG | 0.505001 | 3.2:+51551379 | MS.gene05676:CDS |
| CAAAACAGCGAAAATTGCTT+GGG | 0.509904 | 3.2:-51552694 | None:intergenic |
| ACTCGTCGTTGGTTCGAGAA+GGG | 0.512022 | 3.2:+51551411 | MS.gene05676:CDS |
| GTCGAGAATAGAGGTGGGAA+TGG | 0.515982 | 3.2:+51551264 | MS.gene05676:CDS |
| TACTCGTCGTTGGTTCGAGA+AGG | 0.523814 | 3.2:+51551410 | MS.gene05676:CDS |
| CAAAACAGCGAAAATTGCTT+GGG | 0.524048 | 3.2:-51552835 | None:intergenic |
| TGTGGGTGGGGATGGAGTCA+AGG | 0.524533 | 3.2:+51551299 | MS.gene05676:CDS |
| GAATGGAGTTGGTGATCCTG+TGG | 0.526513 | 3.2:+51551281 | MS.gene05676:CDS |
| CAGATGGGGTTGATCAGGGA+TGG | 0.526606 | 3.2:+51551195 | None:intergenic |
| TGTAGAAAGCAGGCGAATGA+AGG | 0.529310 | 3.2:-51551453 | None:intergenic |
| ATGACTGGATGCAGAATTGG+AGG | 0.532457 | 3.2:-51551541 | None:intergenic |
| CCTGCCATGGTTAATGGTGG+TGG | 0.534386 | 3.2:+51552882 | MS.gene05676:CDS |
| AATGGAGTTGGTGATCCTGT+GGG | 0.538298 | 3.2:+51551282 | MS.gene05676:CDS |
| GGGAGACCTTTACTCGTCGT+TGG | 0.542180 | 3.2:+51551400 | MS.gene05676:CDS |
| TTTCCAGATGGGGTTGATCA+GGG | 0.545091 | 3.2:+51551191 | None:intergenic |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3.2:+51552621 | MS.gene05676:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3.2:+51552762 | MS.gene05676:CDS |
| TTTCTACAATATGGACTTGG+TGG | 0.551626 | 3.2:+51551468 | MS.gene05676:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3.2:+51552615 | MS.gene05676:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3.2:+51552756 | MS.gene05676:CDS |
| CCACCACCATTAACCATAGC+AGG | 0.561187 | 3.2:-51552609 | None:intergenic |
| AAGTCCATATTGTAGAAAGC+AGG | 0.561840 | 3.2:-51551463 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.564209 | 3.2:-51552882 | None:intergenic |
| TTGTAATCACACGAGAAATG+AGG | 0.564368 | 3.2:+51551337 | MS.gene05676:CDS |
| CCACCACCATTAACCATGGC+AGG | 0.568848 | 3.2:-51552750 | None:intergenic |
| CATTTCTCGTGTGATTACAA+AGG | 0.568855 | 3.2:-51551334 | None:intergenic |
| CCTGCTATGGTTAATGGTGG+TGG | 0.573689 | 3.2:+51552609 | MS.gene05676:CDS |
| CCTGCCATGGTTAATGGTGG+TGG | 0.576171 | 3.2:+51552750 | MS.gene05676:CDS |
| TTGACTCCATCCCCACCCAC+AGG | 0.577668 | 3.2:-51551297 | None:intergenic |
| TTCGAGAAGGGAATGGAAGG+TGG | 0.586763 | 3.2:+51551423 | MS.gene05676:CDS |
| TGTAATCACACGAGAAATGA+GGG | 0.592115 | 3.2:+51551338 | MS.gene05676:CDS |
| TGGTTCGAGAAGGGAATGGA+AGG | 0.592500 | 3.2:+51551420 | MS.gene05676:CDS |
| TCAGCAACAAGATCCTGCTA+TGG | 0.595166 | 3.2:+51552596 | MS.gene05676:CDS |
| TCAATTCTGGTGAGAATACG+AGG | 0.598570 | 3.2:-51551377 | None:intergenic |
| AAATCAACATGGGTTTGTGA+TGG | 0.600368 | 3.2:+51552908 | MS.gene05676:CDS |
| AGAAAGCAGGCGAATGAAGG+TGG | 0.603444 | 3.2:-51551450 | None:intergenic |
| GGATGGAGTCGGTGATATCG+AGG | 0.605608 | 3.2:+51551212 | MS.gene05676:CDS |
| TCGTTGGTTCGAGAAGGGAA+TGG | 0.610158 | 3.2:+51551416 | MS.gene05676:CDS |
| TCACACGAGAAATGAGGGTG+AGG | 0.612130 | 3.2:+51551343 | MS.gene05676:CDS |
| TGCTCCACCACCATTAACCA+TGG | 0.622092 | 3.2:-51552886 | None:intergenic |
| GGGGACGTCGAGAATAGAGG+TGG | 0.627330 | 3.2:+51551258 | MS.gene05676:CDS |
| GGTGGTGGAGCAAATCAACA+TGG | 0.627780 | 3.2:+51552897 | MS.gene05676:CDS |
| GGGTTGATCAGGGATGGAGT+CGG | 0.636883 | 3.2:+51551201 | MS.gene05676:CDS |
| TCTGGTGAGAATACGAGGGG+AGG | 0.658186 | 3.2:-51551372 | None:intergenic |
| TCAGCAACAAGATCCTGCCA+TGG | 0.666632 | 3.2:+51552869 | MS.gene05676:CDS |
| CCAGCAACAAGATCCTGCCA+TGG | 0.666762 | 3.2:+51552737 | MS.gene05676:CDS |
| TTGACCACCACCATTAACCA+TGG | 0.670727 | 3.2:-51552754 | None:intergenic |
| AGTTCGTGATCTCGTGTTAG+GGG | 0.678742 | 3.2:+51551239 | MS.gene05676:CDS |
| GGAGTCGGTGATATCGAGGA+CGG | 0.679098 | 3.2:+51551216 | MS.gene05676:CDS |
| CAATTCTGGTGAGAATACGA+GGG | 0.682451 | 3.2:-51551376 | None:intergenic |
| GGGACGTCGAGAATAGAGGT+GGG | 0.689525 | 3.2:+51551259 | MS.gene05676:CDS |
| GTGGTGGAGCAAATCAACAT+GGG | 0.698550 | 3.2:+51552898 | MS.gene05676:CDS |
| AATTCTGGTGAGAATACGAG+GGG | 0.704615 | 3.2:-51551375 | None:intergenic |
| GATCCTGCTATGGTTAATGG+TGG | 0.728334 | 3.2:+51552606 | MS.gene05676:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3.2:+51552747 | MS.gene05676:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3.2:+51552879 | MS.gene05676:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATGTTGACAAAATTTAAT+TGG | + | chr3.2:51551787-51551806 | MS.gene05676:intron | 20.0% |
| !! | TCTATTTGTGTGATTATTAT+TGG | + | chr3.2:51551763-51551782 | MS.gene05676:intron | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | chr3.2:51552449-51552468 | MS.gene05676:intron | 20.0% |
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | chr3.2:51552163-51552182 | None:intergenic | 20.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | chr3.2:51552436-51552455 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | chr3.2:51552435-51552454 | None:intergenic | 25.0% |
| ! | AGAGGGAAAAAAAATACAAT+GGG | - | chr3.2:51552418-51552437 | None:intergenic | 25.0% |
| ! | GACTTTACTTCAAATCAAAA+GGG | - | chr3.2:51552359-51552378 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTCAAAAT+CGG | - | chr3.2:51552382-51552401 | None:intergenic | 25.0% |
| !! | GCATTTTCAACATATAGTAT+AGG | + | chr3.2:51551875-51551894 | MS.gene05676:intron | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | - | chr3.2:51552235-51552254 | None:intergenic | 25.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | chr3.2:51552162-51552181 | None:intergenic | 25.0% |
| !!! | CTTATTTTGGAATTCCATTA+TGG | - | chr3.2:51552222-51552241 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | chr3.2:51552395-51552414 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | chr3.2:51552462-51552481 | MS.gene05676:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | chr3.2:51552251-51552270 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | chr3.2:51552546-51552565 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTCAAAATC+GGG | - | chr3.2:51552381-51552400 | None:intergenic | 30.0% | |
| ATTTCTCGTGTGATTACAAA+GGG | - | chr3.2:51551336-51551355 | None:intergenic | 30.0% | |
| CTGTGTTTAATCAAGTCTAA+TGG | - | chr3.2:51551702-51551721 | None:intergenic | 30.0% | |
| GAGAGGGAAAAAAAATACAA+TGG | - | chr3.2:51552419-51552438 | None:intergenic | 30.0% | |
| GAGGGAAAAAAAATACAATG+GGG | - | chr3.2:51552417-51552436 | None:intergenic | 30.0% | |
| GGACTTTACTTCAAATCAAA+AGG | - | chr3.2:51552360-51552379 | None:intergenic | 30.0% | |
| TAATAATATGCTTCAGACCT+TGG | - | chr3.2:51552500-51552519 | None:intergenic | 30.0% | |
| TTAATCAAGTCTAATGGAAG+CGG | - | chr3.2:51551696-51551715 | None:intergenic | 30.0% | |
| ! | AAACTCTCTTGTTTAGAGTT+TGG | + | chr3.2:51551905-51551924 | MS.gene05676:intron | 30.0% |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | chr3.2:51552465-51552484 | MS.gene05676:intron | 30.0% |
| AAATCAACATGGGTTTGTGA+TGG | + | chr3.2:51552908-51552927 | MS.gene05676:CDS | 35.0% | |
| AAGTCCATATTGTAGAAAGC+AGG | - | chr3.2:51551466-51551485 | None:intergenic | 35.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | chr3.2:51552092-51552111 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | chr3.2:51552839-51552858 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3.2:51552697-51552716 | None:intergenic | 35.0% | |
| CATTTCTCGTGTGATTACAA+AGG | - | chr3.2:51551337-51551356 | None:intergenic | 35.0% | |
| GTCCATTATTCAATCAGTAG+TGG | - | chr3.2:51551603-51551622 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3.2:51552641-51552660 | None:intergenic | 35.0% | |
| TCAAGGACTCAAATCCATAA+TGG | + | chr3.2:51552205-51552224 | MS.gene05676:intron | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | chr3.2:51552091-51552110 | MS.gene05676:intron | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | chr3.2:51552182-51552201 | None:intergenic | 35.0% | |
| TGCTTTCTACAATATGGACT+TGG | + | chr3.2:51551465-51551484 | MS.gene05676:CDS | 35.0% | |
| TGTAATCACACGAGAAATGA+GGG | + | chr3.2:51551338-51551357 | MS.gene05676:CDS | 35.0% | |
| TTATGGATTTGAGTCCTTGA+AGG | - | chr3.2:51552205-51552224 | None:intergenic | 35.0% | |
| TTGTAATCACACGAGAAATG+AGG | + | chr3.2:51551337-51551356 | MS.gene05676:CDS | 35.0% | |
| TTTCTACAATATGGACTTGG+TGG | + | chr3.2:51551468-51551487 | MS.gene05676:CDS | 35.0% | |
| ! | CTCTTGTTTAGAGTTTGGAT+TGG | + | chr3.2:51551910-51551929 | MS.gene05676:intron | 35.0% |
| ! | TGCCACTACTGATTGAATAA+TGG | + | chr3.2:51551598-51551617 | MS.gene05676:intron | 35.0% |
| !!! | GCTCTAGATTGTTTTAATCG+AGG | + | chr3.2:51551504-51551523 | MS.gene05676:CDS | 35.0% |
| !!! | TTTTTTTTGGAAGCCCACAA+TGG | + | chr3.2:51552025-51552044 | MS.gene05676:intron | 35.0% |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3.2:51552687-51552706 | None:intergenic | 40.0% | |
| AACATGACTGGATGCAGAAT+TGG | - | chr3.2:51551547-51551566 | None:intergenic | 40.0% | |
| AATTCTGCATCCAGTCATGT+TGG | + | chr3.2:51551546-51551565 | MS.gene05676:intron | 40.0% | |
| AATTCTGGTGAGAATACGAG+GGG | - | chr3.2:51551378-51551397 | None:intergenic | 40.0% | |
| CAAAAGGGAATAGCAAAACC+TGG | - | chr3.2:51552344-51552363 | None:intergenic | 40.0% | |
| CAAGATCCTGCTATGGTTAA+TGG | + | chr3.2:51552603-51552622 | MS.gene05676:CDS | 40.0% | |
| CAATTCTGGTGAGAATACGA+GGG | - | chr3.2:51551379-51551398 | None:intergenic | 40.0% | |
| CGTATTCTCACCAGAATTGA+GGG | + | chr3.2:51551380-51551399 | MS.gene05676:CDS | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | chr3.2:51552698-51552717 | None:intergenic | 40.0% | |
| TCAATTCTGGTGAGAATACG+AGG | - | chr3.2:51551380-51551399 | None:intergenic | 40.0% | |
| TCGTATTCTCACCAGAATTG+AGG | + | chr3.2:51551379-51551398 | MS.gene05676:CDS | 40.0% | |
| TTCGCCTGCTTTCTACAATA+TGG | + | chr3.2:51551459-51551478 | MS.gene05676:CDS | 40.0% | |
| ! | GCTTTCAGGTAATAAGGAAG+AGG | + | chr3.2:51551948-51551967 | MS.gene05676:intron | 40.0% |
| !! | GAGAGTGCTTTCAGGTAATA+AGG | + | chr3.2:51551942-51551961 | MS.gene05676:intron | 40.0% |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | chr3.2:51552562-51552581 | MS.gene05676:CDS | 40.0% |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | chr3.2:51552591-51552610 | None:intergenic | 40.0% |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | chr3.2:51552468-51552487 | MS.gene05676:intron | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | chr3.2:51552579-51552598 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | chr3.2:51552582-51552601 | None:intergenic | 40.0% |
| AATAGAGGTGGGAATGGAGT+TGG | + | chr3.2:51551270-51551289 | MS.gene05676:CDS | 45.0% | |
| AGTTCGTGATCTCGTGTTAG+GGG | + | chr3.2:51551239-51551258 | MS.gene05676:CDS | 45.0% | |
| ATCAAGTCTAATGGAAGCGG+AGG | - | chr3.2:51551693-51551712 | None:intergenic | 45.0% | |
| ATGACTGGATGCAGAATTGG+AGG | - | chr3.2:51551544-51551563 | None:intergenic | 45.0% | |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3.2:51552744-51552763 | MS.gene05676:CDS | 45.0% | |
| GAGTTCGTGATCTCGTGTTA+GGG | + | chr3.2:51551238-51551257 | MS.gene05676:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | chr3.2:51552606-51552625 | MS.gene05676:CDS | 45.0% | |
| GTAAAGGTCTCCCTCAATTC+TGG | - | chr3.2:51551393-51551412 | None:intergenic | 45.0% | |
| TCAGCAACAAGATCCTGCTA+TGG | + | chr3.2:51552596-51552615 | MS.gene05676:CDS | 45.0% | |
| TGCGACTTTCTTCACCTTCA+AGG | + | chr3.2:51552188-51552207 | MS.gene05676:intron | 45.0% | |
| TGGATGCAGAATTGGAGGTT+TGG | - | chr3.2:51551539-51551558 | None:intergenic | 45.0% | |
| TGTAGAAAGCAGGCGAATGA+AGG | - | chr3.2:51551456-51551475 | None:intergenic | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | chr3.2:51552616-51552635 | None:intergenic | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | chr3.2:51552323-51552342 | MS.gene05676:intron | 45.0% |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | chr3.2:51552898-51552917 | MS.gene05676:CDS | 45.0% |
| !! | AATGGAGTTGGTGATCCTGT+GGG | + | chr3.2:51551282-51551301 | MS.gene05676:CDS | 45.0% |
| !! | AGTAGAAGCACCAACATGAC+TGG | - | chr3.2:51551559-51551578 | None:intergenic | 45.0% |
| !! | AGTTGTGAGAGAGTGCTTTC+AGG | + | chr3.2:51551934-51551953 | MS.gene05676:intron | 45.0% |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3.2:51552615-51552634 | MS.gene05676:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | chr3.2:51552703-51552722 | MS.gene05676:CDS | 45.0% |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | chr3.2:51552474-51552493 | MS.gene05676:CDS | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | chr3.2:51552732-51552751 | None:intergenic | 45.0% |
| !!! | TTAAATTTTTCTATTTTTTT+TGG | + | chr3.2:51552012-51552031 | MS.gene05676:intron | 5.0% |
| AGAAAGCAGGCGAATGAAGG+TGG | - | chr3.2:51551453-51551472 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | chr3.2:51552612-51552631 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | chr3.2:51552609-51552628 | MS.gene05676:CDS | 50.0% | |
| CTCGAACCAACGACGAGTAA+AGG | - | chr3.2:51551409-51551428 | None:intergenic | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3.2:51552747-51552766 | MS.gene05676:CDS | 50.0% | |
| GGAGTTCGTGATCTCGTGTT+AGG | + | chr3.2:51551237-51551256 | MS.gene05676:CDS | 50.0% | |
| GTCGAGAATAGAGGTGGGAA+TGG | + | chr3.2:51551264-51551283 | MS.gene05676:CDS | 50.0% | |
| TCACACGAGAAATGAGGGTG+AGG | + | chr3.2:51551343-51551362 | MS.gene05676:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | chr3.2:51552869-51552888 | MS.gene05676:CDS | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | - | chr3.2:51552889-51552908 | None:intergenic | 50.0% | |
| TGGTTCGAGAAGGGAATGGA+AGG | + | chr3.2:51551420-51551439 | MS.gene05676:CDS | 50.0% | |
| TTAGGGGACGTCGAGAATAG+AGG | + | chr3.2:51551255-51551274 | MS.gene05676:CDS | 50.0% | |
| TTCGAGAAGGGAATGGAAGG+TGG | + | chr3.2:51551423-51551442 | MS.gene05676:CDS | 50.0% | |
| TTGAACCTGTGCTTGAGCAG+CGG | - | chr3.2:51552066-51552085 | None:intergenic | 50.0% | |
| TTGGAAGCCCACAATGGATG+CGG | + | chr3.2:51552031-51552050 | MS.gene05676:intron | 50.0% | |
| !! | ACTCGTCGTTGGTTCGAGAA+GGG | + | chr3.2:51551411-51551430 | MS.gene05676:CDS | 50.0% |
| !! | GAATGGAGTTGGTGATCCTG+TGG | + | chr3.2:51551281-51551300 | MS.gene05676:CDS | 50.0% |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | chr3.2:51552897-51552916 | MS.gene05676:CDS | 50.0% |
| !! | TACTCGTCGTTGGTTCGAGA+AGG | + | chr3.2:51551410-51551429 | MS.gene05676:CDS | 50.0% |
| !! | TCGTTGGTTCGAGAAGGGAA+TGG | + | chr3.2:51551416-51551435 | MS.gene05676:CDS | 50.0% |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | chr3.2:51552720-51552739 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | chr3.2:51552723-51552742 | None:intergenic | 50.0% |
| CCACCACCATTAACCATGGC+AGG | - | chr3.2:51552753-51552772 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | chr3.2:51552737-51552756 | MS.gene05676:CDS | 55.0% | |
| CCATGGCAGGATCTTGTTGC+TGG | - | chr3.2:51552740-51552759 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3.2:51552750-51552769 | MS.gene05676:CDS | 55.0% | |
| GGAGTCGGTGATATCGAGGA+CGG | + | chr3.2:51551216-51551235 | MS.gene05676:CDS | 55.0% | |
| GGATGGAGTCGGTGATATCG+AGG | + | chr3.2:51551212-51551231 | MS.gene05676:CDS | 55.0% | |
| GGGACGTCGAGAATAGAGGT+GGG | + | chr3.2:51551259-51551278 | MS.gene05676:CDS | 55.0% | |
| GGGAGACCTTTACTCGTCGT+TGG | + | chr3.2:51551400-51551419 | MS.gene05676:CDS | 55.0% | |
| TCTGGTGAGAATACGAGGGG+AGG | - | chr3.2:51551375-51551394 | None:intergenic | 55.0% | |
| ! | GGGTTGATCAGGGATGGAGT+CGG | + | chr3.2:51551201-51551220 | MS.gene05676:CDS | 55.0% |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3.2:51552621-51552640 | MS.gene05676:CDS | 55.0% |
| !! | AGTTGGTGATCCTGTGGGTG+GGG | + | chr3.2:51551287-51551306 | MS.gene05676:CDS | 55.0% |
| !! | GAGTTGGTGATCCTGTGGGT+GGG | + | chr3.2:51551286-51551305 | MS.gene05676:CDS | 55.0% |
| AGTGGCAGCCGCATCCATTG+TGG | - | chr3.2:51552042-51552061 | None:intergenic | 60.0% | |
| GGGGACGTCGAGAATAGAGG+TGG | + | chr3.2:51551258-51551277 | MS.gene05676:CDS | 60.0% | |
| GTGGCAGCCGCATCCATTGT+GGG | - | chr3.2:51552041-51552060 | None:intergenic | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3.2:51552485-51552504 | MS.gene05676:CDS | 60.0% | |
| TGTGGGTGGGGATGGAGTCA+AGG | + | chr3.2:51551299-51551318 | MS.gene05676:CDS | 60.0% | |
| TTGACTCCATCCCCACCCAC+AGG | - | chr3.2:51551300-51551319 | None:intergenic | 60.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | chr3.2:51552480-51552499 | MS.gene05676:CDS | 60.0% |
| !! | GGAGTTGGTGATCCTGTGGG+TGG | + | chr3.2:51551285-51551304 | MS.gene05676:CDS | 60.0% |
| CACTGCCGCTGCTCAAGCAC+AGG | + | chr3.2:51552058-51552077 | MS.gene05676:intron | 65.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | chr3.2:51552060-51552079 | None:intergenic | 65.0% | |
| GGTGATCCTGTGGGTGGGGA+TGG | + | chr3.2:51551291-51551310 | MS.gene05676:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 51551198 | 51552941 | 51551198 | ID=MS.gene05676 |
| chr3.2 | mRNA | 51551198 | 51552941 | 51551198 | ID=MS.gene05676.t1;Parent=MS.gene05676 |
| chr3.2 | exon | 51551198 | 51551563 | 51551198 | ID=MS.gene05676.t1.exon1;Parent=MS.gene05676.t1 |
| chr3.2 | CDS | 51551198 | 51551563 | 51551198 | ID=cds.MS.gene05676.t1;Parent=MS.gene05676.t1 |
| chr3.2 | exon | 51552471 | 51552941 | 51552471 | ID=MS.gene05676.t1.exon2;Parent=MS.gene05676.t1 |
| chr3.2 | CDS | 51552471 | 51552941 | 51552471 | ID=cds.MS.gene05676.t1;Parent=MS.gene05676.t1 |
| Gene Sequence |
| Protein sequence |
