Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05678.t1 | KEH34139.1 | 73.7 | 118 | 21 | 2 | 6 | 123 | 5 | 112 | 4.60E-36 | 161.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05678.t1 | A0A072UWC0 | 73.7 | 118 | 21 | 2 | 6 | 123 | 5 | 112 | 3.3e-36 | 161.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05669 | MS.gene05678 | 0.81677 | 4.66E-52 | -1.69E-46 |
| MS.gene05676 | MS.gene05678 | 0.951442 | 2.03E-109 | -1.69E-46 |
| MS.gene05678 | MS.gene070309 | 0.923843 | 1.56E-89 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05678.t1 | MTR_3g462080 | 70.732 | 123 | 26 | 2 | 6 | 128 | 5 | 117 | 1.96e-51 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3.2:+51571111 | MS.gene05678:CDS |
| CAAGATCCTGCCATGGTTAA+TGG | 0.242798 | 3.2:+51571243 | MS.gene05678:CDS |
| TTCGCCTGCTTTCTACAATA+TGG | 0.246148 | 3.2:+51569842 | MS.gene05678:CDS |
| CAAGATCCTGCTATGGTTAA+TGG | 0.249869 | 3.2:+51570970 | MS.gene05678:CDS |
| CCATGGCAGGATCTTGTTGC+TGG | 0.326139 | 3.2:-51571104 | None:intergenic |
| GTAAAGGTCTCCCTCAATTC+TGG | 0.339441 | 3.2:-51569773 | None:intergenic |
| ATTTCCAGATGGGGTTGATC+AGG | 0.345391 | 3.2:+51569573 | None:intergenic |
| GGAGTTCGTGATCTCGTGTT+AGG | 0.367714 | 3.2:+51569620 | MS.gene05678:CDS |
| AACATGACTGGATGCAGAAT+TGG | 0.372606 | 3.2:-51569927 | None:intergenic |
| GGTGATCCTGTGGGTGGGGA+TGG | 0.412104 | 3.2:+51569674 | MS.gene05678:CDS |
| TAATAATATGCTTCAGACCT+TGG | 0.421796 | 3.2:-51570864 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3.2:-51571051 | None:intergenic |
| AAAATTGCTTGGGCAAGAAC+AGG | 0.434186 | 3.2:-51571192 | None:intergenic |
| GAGTTCGTGATCTCGTGTTA+GGG | 0.436257 | 3.2:+51569621 | MS.gene05678:CDS |
| AAAATTGCTTGAACAAGAAC+AGG | 0.450880 | 3.2:-51570910 | None:intergenic |
| TGGATGCAGAATTGGAGGTT+TGG | 0.458114 | 3.2:-51569919 | None:intergenic |
| GCAAAACAGCGAAAATTGCT+TGG | 0.458662 | 3.2:-51571062 | None:intergenic |
| AGTTGGTGATCCTGTGGGTG+GGG | 0.466475 | 3.2:+51569670 | MS.gene05678:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3.2:+51570993 | MS.gene05678:CDS |
| TGGTGGTCAAGGCCAAGGTC+TGG | 0.468047 | 3.2:+51571134 | MS.gene05678:CDS |
| ACAAAACAGCGAAAATTGCT+TGG | 0.469717 | 3.2:-51571203 | None:intergenic |
| CGTATTCTCACCAGAATTGA+GGG | 0.471759 | 3.2:+51569763 | MS.gene05678:CDS |
| TGCTTTCTACAATATGGACT+TGG | 0.475892 | 3.2:+51569848 | MS.gene05678:CDS |
| CTCGAACCAACGACGAGTAA+AGG | 0.476388 | 3.2:-51569789 | None:intergenic |
| TTAGGGGACGTCGAGAATAG+AGG | 0.481029 | 3.2:+51569638 | MS.gene05678:CDS |
| AGTAGAAGCACCAACATGAC+TGG | 0.491047 | 3.2:-51569939 | None:intergenic |
| ATTTCTCGTGTGATTACAAA+GGG | 0.491932 | 3.2:-51569716 | None:intergenic |
| GAGTTGGTGATCCTGTGGGT+GGG | 0.492123 | 3.2:+51569669 | MS.gene05678:CDS |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3.2:-51571005 | None:intergenic |
| TAATAATATGCTCCAGACCT+TGG | 0.497575 | 3.2:-51571146 | None:intergenic |
| GGAGTTGGTGATCCTGTGGG+TGG | 0.499218 | 3.2:+51569668 | MS.gene05678:CDS |
| AATAGAGGTGGGAATGGAGT+TGG | 0.503425 | 3.2:+51569653 | MS.gene05678:CDS |
| TCGTATTCTCACCAGAATTG+AGG | 0.505001 | 3.2:+51569762 | MS.gene05678:CDS |
| CAAAACAGCGAAAATTGCTT+GGG | 0.509904 | 3.2:-51571061 | None:intergenic |
| ACTCGTCGTTGGTTCGAGAA+GGG | 0.512022 | 3.2:+51569794 | MS.gene05678:CDS |
| GTCGAGAATAGAGGTGGGAA+TGG | 0.515982 | 3.2:+51569647 | MS.gene05678:CDS |
| TACTCGTCGTTGGTTCGAGA+AGG | 0.523814 | 3.2:+51569793 | MS.gene05678:CDS |
| CAAAACAGCGAAAATTGCTT+GGG | 0.524048 | 3.2:-51571202 | None:intergenic |
| TGTGGGTGGGGATGGAGTCA+AGG | 0.524533 | 3.2:+51569682 | MS.gene05678:CDS |
| GAATGGAGTTGGTGATCCTG+TGG | 0.526513 | 3.2:+51569664 | MS.gene05678:CDS |
| CAGATGGGGTTGATCAGGGA+TGG | 0.526606 | 3.2:+51569578 | None:intergenic |
| TGTAGAAAGCAGGCGAATGA+AGG | 0.529310 | 3.2:-51569836 | None:intergenic |
| ATGACTGGATGCAGAATTGG+AGG | 0.532457 | 3.2:-51569924 | None:intergenic |
| CCTGCCATGGTTAATGGTGG+TGG | 0.534386 | 3.2:+51571249 | MS.gene05678:CDS |
| AATGGAGTTGGTGATCCTGT+GGG | 0.538298 | 3.2:+51569665 | MS.gene05678:CDS |
| GGGAGACCTTTACTCGTCGT+TGG | 0.542180 | 3.2:+51569783 | MS.gene05678:CDS |
| TTTCCAGATGGGGTTGATCA+GGG | 0.545091 | 3.2:+51569574 | None:intergenic |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3.2:+51570988 | MS.gene05678:CDS |
| AATGGTGGTGGTCAAGGCCA+AGG | 0.551134 | 3.2:+51571129 | MS.gene05678:CDS |
| TTTCTACAATATGGACTTGG+TGG | 0.551626 | 3.2:+51569851 | MS.gene05678:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3.2:+51570982 | MS.gene05678:CDS |
| ATGGTTAATGGTGGTGGTCA+AGG | 0.560774 | 3.2:+51571123 | MS.gene05678:CDS |
| CCACCACCATTAACCATAGC+AGG | 0.561187 | 3.2:-51570976 | None:intergenic |
| AAGTCCATATTGTAGAAAGC+AGG | 0.561840 | 3.2:-51569846 | None:intergenic |
| CCACCACCATTAACCATGGC+AGG | 0.564209 | 3.2:-51571249 | None:intergenic |
| TTGTAATCACACGAGAAATG+AGG | 0.564368 | 3.2:+51569720 | MS.gene05678:CDS |
| CCACCACCATTAACCATGGC+AGG | 0.568848 | 3.2:-51571117 | None:intergenic |
| CATTTCTCGTGTGATTACAA+AGG | 0.568855 | 3.2:-51569717 | None:intergenic |
| AATTCTGCATCCAGTCATGT+TGG | 0.571897 | 3.2:+51569929 | MS.gene05678:CDS |
| CCTGCTATGGTTAATGGTGG+TGG | 0.573689 | 3.2:+51570976 | MS.gene05678:CDS |
| CCTGCCATGGTTAATGGTGG+TGG | 0.576171 | 3.2:+51571117 | MS.gene05678:CDS |
| TTGACTCCATCCCCACCCAC+AGG | 0.577668 | 3.2:-51569680 | None:intergenic |
| TTCGAGAAGGGAATGGAAGG+TGG | 0.586763 | 3.2:+51569806 | MS.gene05678:CDS |
| TGTAATCACACGAGAAATGA+GGG | 0.592115 | 3.2:+51569721 | MS.gene05678:CDS |
| TGGTTCGAGAAGGGAATGGA+AGG | 0.592500 | 3.2:+51569803 | MS.gene05678:CDS |
| TCAGCAACAAGATCCTGCTA+TGG | 0.595166 | 3.2:+51570963 | MS.gene05678:CDS |
| TCAATTCTGGTGAGAATACG+AGG | 0.598570 | 3.2:-51569760 | None:intergenic |
| AAATCAACATGGGTTTGTGA+TGG | 0.600368 | 3.2:+51571275 | MS.gene05678:CDS |
| AGAAAGCAGGCGAATGAAGG+TGG | 0.603444 | 3.2:-51569833 | None:intergenic |
| GGATGGAGTCGGTGATATCG+AGG | 0.605608 | 3.2:+51569595 | MS.gene05678:CDS |
| TCGTTGGTTCGAGAAGGGAA+TGG | 0.610158 | 3.2:+51569799 | MS.gene05678:CDS |
| TCACACGAGAAATGAGGGTG+AGG | 0.612130 | 3.2:+51569726 | MS.gene05678:CDS |
| TGCTCCACCACCATTAACCA+TGG | 0.622092 | 3.2:-51571253 | None:intergenic |
| GGGGACGTCGAGAATAGAGG+TGG | 0.627330 | 3.2:+51569641 | MS.gene05678:CDS |
| GGTGGTGGAGCAAATCAACA+TGG | 0.627780 | 3.2:+51571264 | MS.gene05678:CDS |
| GGGTTGATCAGGGATGGAGT+CGG | 0.636883 | 3.2:+51569584 | MS.gene05678:CDS |
| TCTGGTGAGAATACGAGGGG+AGG | 0.658186 | 3.2:-51569755 | None:intergenic |
| TCAGCAACAAGATCCTGCCA+TGG | 0.666632 | 3.2:+51571236 | MS.gene05678:CDS |
| CCAGCAACAAGATCCTGCCA+TGG | 0.666762 | 3.2:+51571104 | MS.gene05678:CDS |
| TTGACCACCACCATTAACCA+TGG | 0.670727 | 3.2:-51571121 | None:intergenic |
| AGTTCGTGATCTCGTGTTAG+GGG | 0.678742 | 3.2:+51569622 | MS.gene05678:CDS |
| GGAGTCGGTGATATCGAGGA+CGG | 0.679098 | 3.2:+51569599 | MS.gene05678:CDS |
| CAATTCTGGTGAGAATACGA+GGG | 0.682451 | 3.2:-51569759 | None:intergenic |
| GGGACGTCGAGAATAGAGGT+GGG | 0.689525 | 3.2:+51569642 | MS.gene05678:CDS |
| GTGGTGGAGCAAATCAACAT+GGG | 0.698550 | 3.2:+51571265 | MS.gene05678:CDS |
| AATTCTGGTGAGAATACGAG+GGG | 0.704615 | 3.2:-51569758 | None:intergenic |
| GATCCTGCTATGGTTAATGG+TGG | 0.728334 | 3.2:+51570973 | MS.gene05678:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3.2:+51571114 | MS.gene05678:CDS |
| GATCCTGCCATGGTTAATGG+TGG | 0.733113 | 3.2:+51571246 | MS.gene05678:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATGTTGACAAAATTTAAT+TGG | + | chr3.2:51570170-51570189 | MS.gene05678:intron | 20.0% |
| !! | TCTATTTGTGTGATTATTAT+TGG | + | chr3.2:51570146-51570165 | MS.gene05678:intron | 20.0% |
| !!! | TACTTTTCTTTTGTCTTTTT+AGG | + | chr3.2:51570816-51570835 | MS.gene05678:intron | 20.0% |
| !!! | TTGGATTTTATGATTTAAGT+CGG | - | chr3.2:51570530-51570549 | None:intergenic | 20.0% |
| ! | AAAAGTAAGAATAGAAAGAG+AGG | - | chr3.2:51570803-51570822 | None:intergenic | 25.0% |
| ! | AAAGTAAGAATAGAAAGAGA+GGG | - | chr3.2:51570802-51570821 | None:intergenic | 25.0% |
| ! | TAAATCAAGGTTGTGAAAAT+CGG | - | chr3.2:51570749-51570768 | None:intergenic | 25.0% |
| !! | GCATTTTCAACATATAGTAT+AGG | + | chr3.2:51570249-51570268 | MS.gene05678:intron | 25.0% |
| !! | TCGATGTATTTTGCTTATTT+TGG | - | chr3.2:51570602-51570621 | None:intergenic | 25.0% |
| !! | TGGATTTTATGATTTAAGTC+GGG | - | chr3.2:51570529-51570548 | None:intergenic | 25.0% |
| !!! | GATATATTGACTCTAAATCA+AGG | - | chr3.2:51570762-51570781 | None:intergenic | 25.0% |
| !!! | TCTTTTTAGGAACTTTTTCA+TGG | + | chr3.2:51570829-51570848 | MS.gene05678:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+AGG | - | chr3.2:51570618-51570637 | None:intergenic | 30.0% | |
| AAAATTGCTTGAACAAGAAC+AGG | - | chr3.2:51570913-51570932 | None:intergenic | 30.0% | |
| AAATCAAGGTTGTGAAAATC+GGG | - | chr3.2:51570748-51570767 | None:intergenic | 30.0% | |
| AGAGGGAAAGAAAATACAAT+GGG | - | chr3.2:51570785-51570804 | None:intergenic | 30.0% | |
| ATTTCTCGTGTGATTACAAA+GGG | - | chr3.2:51569719-51569738 | None:intergenic | 30.0% | |
| CTGTGTTTAATCAAGTCTAA+TGG | - | chr3.2:51570085-51570104 | None:intergenic | 30.0% | |
| GACTTTACTTCAAATCGAAA+GGG | - | chr3.2:51570726-51570745 | None:intergenic | 30.0% | |
| TAATAATATGCTTCAGACCT+TGG | - | chr3.2:51570867-51570886 | None:intergenic | 30.0% | |
| TTAATCAAGTCTAATGGAAG+CGG | - | chr3.2:51570079-51570098 | None:intergenic | 30.0% | |
| ! | AAACTCTCTTGTTTAGAGTT+TGG | + | chr3.2:51570279-51570298 | MS.gene05678:intron | 30.0% |
| !!! | CTTATTTTGGAATTCCACTA+TGG | - | chr3.2:51570589-51570608 | None:intergenic | 30.0% |
| !!! | TTTTAGGAACTTTTTCATGG+TGG | + | chr3.2:51570832-51570851 | MS.gene05678:intron | 30.0% |
| AAATCAACATGGGTTTGTGA+TGG | + | chr3.2:51571275-51571294 | MS.gene05678:CDS | 35.0% | |
| AAGTCCATATTGTAGAAAGC+AGG | - | chr3.2:51569849-51569868 | None:intergenic | 35.0% | |
| AATTGTTGAGCTTGAACTTG+AGG | - | chr3.2:51570459-51570478 | None:intergenic | 35.0% | |
| ACAAAACAGCGAAAATTGCT+TGG | - | chr3.2:51571206-51571225 | None:intergenic | 35.0% | |
| CAAAACAGCGAAAATTGCTT+GGG | - | chr3.2:51571064-51571083 | None:intergenic | 35.0% | |
| CATTTCTCGTGTGATTACAA+AGG | - | chr3.2:51569720-51569739 | None:intergenic | 35.0% | |
| GAGAGGGAAAGAAAATACAA+TGG | - | chr3.2:51570786-51570805 | None:intergenic | 35.0% | |
| GAGGGAAAGAAAATACAATG+GGG | - | chr3.2:51570784-51570803 | None:intergenic | 35.0% | |
| GGACTTTACTTCAAATCGAA+AGG | - | chr3.2:51570727-51570746 | None:intergenic | 35.0% | |
| GTCCATTATTCAATCAGTAG+TGG | - | chr3.2:51569986-51570005 | None:intergenic | 35.0% | |
| TAATAATATGCTCCAGACCT+TGG | - | chr3.2:51571008-51571027 | None:intergenic | 35.0% | |
| TCAAGTTCAAGCTCAACAAT+TGG | + | chr3.2:51570458-51570477 | MS.gene05678:intron | 35.0% | |
| TGAAGAAAGTCGCAAAATCT+TGG | - | chr3.2:51570549-51570568 | None:intergenic | 35.0% | |
| TGCTTTCTACAATATGGACT+TGG | + | chr3.2:51569848-51569867 | MS.gene05678:CDS | 35.0% | |
| TGTAATCACACGAGAAATGA+GGG | + | chr3.2:51569721-51569740 | MS.gene05678:CDS | 35.0% | |
| TTGTAATCACACGAGAAATG+AGG | + | chr3.2:51569720-51569739 | MS.gene05678:CDS | 35.0% | |
| TTTCTACAATATGGACTTGG+TGG | + | chr3.2:51569851-51569870 | MS.gene05678:CDS | 35.0% | |
| ! | CTCTTGTTTAGAGTTTGGAT+TGG | + | chr3.2:51570284-51570303 | MS.gene05678:intron | 35.0% |
| ! | TGCCACTACTGATTGAATAA+TGG | + | chr3.2:51569981-51570000 | MS.gene05678:intron | 35.0% |
| !!! | GCTCTAGATTGTTTTAATCG+AGG | + | chr3.2:51569887-51569906 | MS.gene05678:CDS | 35.0% |
| AAAATTGCTTGGGCAAGAAC+AGG | - | chr3.2:51571054-51571073 | None:intergenic | 40.0% | |
| AACATGACTGGATGCAGAAT+TGG | - | chr3.2:51569930-51569949 | None:intergenic | 40.0% | |
| AATTCTGCATCCAGTCATGT+TGG | + | chr3.2:51569929-51569948 | MS.gene05678:CDS | 40.0% | |
| AATTCTGGTGAGAATACGAG+GGG | - | chr3.2:51569761-51569780 | None:intergenic | 40.0% | |
| CAAGATCCTGCTATGGTTAA+TGG | + | chr3.2:51570970-51570989 | MS.gene05678:CDS | 40.0% | |
| CAATTCTGGTGAGAATACGA+GGG | - | chr3.2:51569762-51569781 | None:intergenic | 40.0% | |
| CGTATTCTCACCAGAATTGA+GGG | + | chr3.2:51569763-51569782 | MS.gene05678:CDS | 40.0% | |
| CTATGGATTTGAGTCCTTGA+AGG | - | chr3.2:51570572-51570591 | None:intergenic | 40.0% | |
| GCAAAACAGCGAAAATTGCT+TGG | - | chr3.2:51571065-51571084 | None:intergenic | 40.0% | |
| TCAAGGACTCAAATCCATAG+TGG | + | chr3.2:51570572-51570591 | MS.gene05678:intron | 40.0% | |
| TCAATTCTGGTGAGAATACG+AGG | - | chr3.2:51569763-51569782 | None:intergenic | 40.0% | |
| TCGTATTCTCACCAGAATTG+AGG | + | chr3.2:51569762-51569781 | MS.gene05678:CDS | 40.0% | |
| TTCGCCTGCTTTCTACAATA+TGG | + | chr3.2:51569842-51569861 | MS.gene05678:CDS | 40.0% | |
| !! | TTTTAGCTGTTTTGCCTCCA+TGG | + | chr3.2:51570929-51570948 | MS.gene05678:CDS | 40.0% |
| !!! | GGATCTTGTTGCTGATTTTG+TGG | - | chr3.2:51570958-51570977 | None:intergenic | 40.0% |
| !!! | TAGGAACTTTTTCATGGTGG+TGG | + | chr3.2:51570835-51570854 | MS.gene05678:intron | 40.0% |
| !!! | TGATTTTGCTGATTCCATGG+AGG | - | chr3.2:51570946-51570965 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGCTGATTCCA+TGG | - | chr3.2:51570949-51570968 | None:intergenic | 40.0% |
| !!! | TTTTTTTTGGAAGCCCACGA+TGG | + | chr3.2:51570392-51570411 | MS.gene05678:intron | 40.0% |
| AATAGAGGTGGGAATGGAGT+TGG | + | chr3.2:51569653-51569672 | MS.gene05678:CDS | 45.0% | |
| AGTTCGTGATCTCGTGTTAG+GGG | + | chr3.2:51569622-51569641 | MS.gene05678:CDS | 45.0% | |
| ATCAAGTCTAATGGAAGCGG+AGG | - | chr3.2:51570076-51570095 | None:intergenic | 45.0% | |
| ATGACTGGATGCAGAATTGG+AGG | - | chr3.2:51569927-51569946 | None:intergenic | 45.0% | |
| CAAGATCCTGCCATGGTTAA+TGG | + | chr3.2:51571111-51571130 | MS.gene05678:CDS | 45.0% | |
| CGAAAGGGAATAGCAAAACC+TGG | - | chr3.2:51570711-51570730 | None:intergenic | 45.0% | |
| GAGTTCGTGATCTCGTGTTA+GGG | + | chr3.2:51569621-51569640 | MS.gene05678:CDS | 45.0% | |
| GATCCTGCTATGGTTAATGG+TGG | + | chr3.2:51570973-51570992 | MS.gene05678:CDS | 45.0% | |
| GTAAAGGTCTCCCTCAATTC+TGG | - | chr3.2:51569776-51569795 | None:intergenic | 45.0% | |
| TCAGCAACAAGATCCTGCTA+TGG | + | chr3.2:51570963-51570982 | MS.gene05678:CDS | 45.0% | |
| TGCGACTTTCTTCACCTTCA+AGG | + | chr3.2:51570555-51570574 | MS.gene05678:intron | 45.0% | |
| TGGATGCAGAATTGGAGGTT+TGG | - | chr3.2:51569922-51569941 | None:intergenic | 45.0% | |
| TGTAGAAAGCAGGCGAATGA+AGG | - | chr3.2:51569839-51569858 | None:intergenic | 45.0% | |
| TTGACCACCACCATTAACCA+TGG | - | chr3.2:51570983-51571002 | None:intergenic | 45.0% | |
| ! | GATTGCGATTTTACGAGTCC+AGG | + | chr3.2:51570690-51570709 | MS.gene05678:intron | 45.0% |
| ! | GTGGTGGAGCAAATCAACAT+GGG | + | chr3.2:51571265-51571284 | MS.gene05678:CDS | 45.0% |
| !! | AATGGAGTTGGTGATCCTGT+GGG | + | chr3.2:51569665-51569684 | MS.gene05678:CDS | 45.0% |
| !! | AGAGAGTGCTTTCAGGTAAG+AGG | + | chr3.2:51570315-51570334 | MS.gene05678:intron | 45.0% |
| !! | AGTAGAAGCACCAACATGAC+TGG | - | chr3.2:51569942-51569961 | None:intergenic | 45.0% |
| !! | AGTTGTGAGAGAGTGCTTTC+AGG | + | chr3.2:51570308-51570327 | MS.gene05678:intron | 45.0% |
| !! | ATGGTTAATGGTGGTGGTCA+AGG | + | chr3.2:51570982-51571001 | MS.gene05678:CDS | 45.0% |
| !! | TTTTCGCTGTTTTGCCTCCA+TGG | + | chr3.2:51571070-51571089 | MS.gene05678:CDS | 45.0% |
| !!! | CTTTTTCATGGTGGTGGTCA+AGG | + | chr3.2:51570841-51570860 | MS.gene05678:intron | 45.0% |
| !!! | GGATCTTGTTGCTGGTTTTG+CGG | - | chr3.2:51571099-51571118 | None:intergenic | 45.0% |
| !!! | TTAAATTTTTCTATTTTTTT+TGG | + | chr3.2:51570379-51570398 | MS.gene05678:intron | 5.0% |
| AGAAAGCAGGCGAATGAAGG+TGG | - | chr3.2:51569836-51569855 | None:intergenic | 50.0% | |
| CCACCACCATTAACCATAGC+AGG | - | chr3.2:51570979-51570998 | None:intergenic | 50.0% | |
| CCTGCTATGGTTAATGGTGG+TGG | + | chr3.2:51570976-51570995 | MS.gene05678:CDS | 50.0% | |
| CTCGAACCAACGACGAGTAA+AGG | - | chr3.2:51569792-51569811 | None:intergenic | 50.0% | |
| GATCCTGCCATGGTTAATGG+TGG | + | chr3.2:51571114-51571133 | MS.gene05678:CDS | 50.0% | |
| GGAGTTCGTGATCTCGTGTT+AGG | + | chr3.2:51569620-51569639 | MS.gene05678:CDS | 50.0% | |
| GTCGAGAATAGAGGTGGGAA+TGG | + | chr3.2:51569647-51569666 | MS.gene05678:CDS | 50.0% | |
| TCACACGAGAAATGAGGGTG+AGG | + | chr3.2:51569726-51569745 | MS.gene05678:CDS | 50.0% | |
| TCAGCAACAAGATCCTGCCA+TGG | + | chr3.2:51571236-51571255 | MS.gene05678:CDS | 50.0% | |
| TGCTCCACCACCATTAACCA+TGG | - | chr3.2:51571256-51571275 | None:intergenic | 50.0% | |
| TGGTTCGAGAAGGGAATGGA+AGG | + | chr3.2:51569803-51569822 | MS.gene05678:CDS | 50.0% | |
| TTAGGGGACGTCGAGAATAG+AGG | + | chr3.2:51569638-51569657 | MS.gene05678:CDS | 50.0% | |
| TTCGAGAAGGGAATGGAAGG+TGG | + | chr3.2:51569806-51569825 | MS.gene05678:CDS | 50.0% | |
| TTGAACCTGTGCTTGAGCAG+CGG | - | chr3.2:51570433-51570452 | None:intergenic | 50.0% | |
| !! | ACTCGTCGTTGGTTCGAGAA+GGG | + | chr3.2:51569794-51569813 | MS.gene05678:CDS | 50.0% |
| !! | GAATGGAGTTGGTGATCCTG+TGG | + | chr3.2:51569664-51569683 | MS.gene05678:CDS | 50.0% |
| !! | GGTGGTGGAGCAAATCAACA+TGG | + | chr3.2:51571264-51571283 | MS.gene05678:CDS | 50.0% |
| !! | TACTCGTCGTTGGTTCGAGA+AGG | + | chr3.2:51569793-51569812 | MS.gene05678:CDS | 50.0% |
| !! | TCGTTGGTTCGAGAAGGGAA+TGG | + | chr3.2:51569799-51569818 | MS.gene05678:CDS | 50.0% |
| !! | TGGTTTTGCGGATACCATGG+AGG | - | chr3.2:51571087-51571106 | None:intergenic | 50.0% |
| !!! | TGCTGGTTTTGCGGATACCA+TGG | - | chr3.2:51571090-51571109 | None:intergenic | 50.0% |
| CCACCACCATTAACCATGGC+AGG | - | chr3.2:51571120-51571139 | None:intergenic | 55.0% | |
| CCAGCAACAAGATCCTGCCA+TGG | + | chr3.2:51571104-51571123 | MS.gene05678:CDS | 55.0% | |
| CCATGGCAGGATCTTGTTGC+TGG | - | chr3.2:51571107-51571126 | None:intergenic | 55.0% | |
| CCTGCCATGGTTAATGGTGG+TGG | + | chr3.2:51571117-51571136 | MS.gene05678:CDS | 55.0% | |
| GGAGTCGGTGATATCGAGGA+CGG | + | chr3.2:51569599-51569618 | MS.gene05678:CDS | 55.0% | |
| GGATGGAGTCGGTGATATCG+AGG | + | chr3.2:51569595-51569614 | MS.gene05678:CDS | 55.0% | |
| GGGACGTCGAGAATAGAGGT+GGG | + | chr3.2:51569642-51569661 | MS.gene05678:CDS | 55.0% | |
| GGGAGACCTTTACTCGTCGT+TGG | + | chr3.2:51569783-51569802 | MS.gene05678:CDS | 55.0% | |
| TCTGGTGAGAATACGAGGGG+AGG | - | chr3.2:51569758-51569777 | None:intergenic | 55.0% | |
| TTGGAAGCCCACGATGGATG+CGG | + | chr3.2:51570398-51570417 | MS.gene05678:intron | 55.0% | |
| ! | GGGTTGATCAGGGATGGAGT+CGG | + | chr3.2:51569584-51569603 | MS.gene05678:CDS | 55.0% |
| !! | AATGGTGGTGGTCAAGGCCA+AGG | + | chr3.2:51570988-51571007 | MS.gene05678:CDS | 55.0% |
| !! | AGTTGGTGATCCTGTGGGTG+GGG | + | chr3.2:51569670-51569689 | MS.gene05678:CDS | 55.0% |
| !! | GAGTTGGTGATCCTGTGGGT+GGG | + | chr3.2:51569669-51569688 | MS.gene05678:CDS | 55.0% |
| GGGGACGTCGAGAATAGAGG+TGG | + | chr3.2:51569641-51569660 | MS.gene05678:CDS | 60.0% | |
| TGGTGGTCAAGGCCAAGGTC+TGG | + | chr3.2:51570852-51570871 | MS.gene05678:intron | 60.0% | |
| TGTGGGTGGGGATGGAGTCA+AGG | + | chr3.2:51569682-51569701 | MS.gene05678:CDS | 60.0% | |
| TTGACTCCATCCCCACCCAC+AGG | - | chr3.2:51569683-51569702 | None:intergenic | 60.0% | |
| !! | CATGGTGGTGGTCAAGGCCA+AGG | + | chr3.2:51570847-51570866 | MS.gene05678:intron | 60.0% |
| !! | GGAGTTGGTGATCCTGTGGG+TGG | + | chr3.2:51569668-51569687 | MS.gene05678:CDS | 60.0% |
| AGTGGCAGCCGCATCCATCG+TGG | - | chr3.2:51570409-51570428 | None:intergenic | 65.0% | |
| CACTGCCGCTGCTCAAGCAC+AGG | + | chr3.2:51570425-51570444 | MS.gene05678:intron | 65.0% | |
| CTGTGCTTGAGCAGCGGCAG+TGG | - | chr3.2:51570427-51570446 | None:intergenic | 65.0% | |
| GGTGATCCTGTGGGTGGGGA+TGG | + | chr3.2:51569674-51569693 | MS.gene05678:CDS | 65.0% | |
| GTGGCAGCCGCATCCATCGT+GGG | - | chr3.2:51570408-51570427 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 51569581 | 51571308 | 51569581 | ID=MS.gene05678 |
| chr3.2 | mRNA | 51569581 | 51571308 | 51569581 | ID=MS.gene05678.t1;Parent=MS.gene05678 |
| chr3.2 | exon | 51569581 | 51569950 | 51569581 | ID=MS.gene05678.t1.exon1;Parent=MS.gene05678.t1 |
| chr3.2 | CDS | 51569581 | 51569950 | 51569581 | ID=cds.MS.gene05678.t1;Parent=MS.gene05678.t1 |
| chr3.2 | exon | 51570863 | 51571308 | 51570863 | ID=MS.gene05678.t1.exon2;Parent=MS.gene05678.t1 |
| chr3.2 | CDS | 51570863 | 51571308 | 51570863 | ID=cds.MS.gene05678.t1;Parent=MS.gene05678.t1 |
| Gene Sequence |
| Protein sequence |
