AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070401.t1 MTR_3g025260 100.000 83 0 0 1 83 67 149 2.05e-54 176
MS.gene070401.t1 MTR_3g025230 85.542 83 12 0 1 83 67 149 6.19e-47 156
MS.gene070401.t1 MTR_3g024520 85.542 83 12 0 1 83 67 149 6.32e-47 156
MS.gene070401.t1 MTR_4g109470 80.723 83 16 0 1 83 66 148 1.62e-44 149
MS.gene070401.t1 MTR_3g436390 49.398 83 42 0 1 83 71 153 1.37e-25 98.2
MS.gene070401.t1 MTR_3g436540 47.561 82 43 0 1 82 75 156 2.59e-24 94.7
MS.gene070401.t1 MTR_8g091690 45.783 83 45 0 1 83 63 145 3.54e-21 85.9
MS.gene070401.t1 MTR_8g104080 46.988 83 44 0 1 83 71 153 1.66e-20 82.4
MS.gene070401.t1 MTR_1g023730 44.578 83 46 0 1 83 68 150 2.62e-20 83.6
MS.gene070401.t1 MTR_3g057900 47.561 82 43 0 1 82 72 153 4.22e-20 82.8
MS.gene070401.t1 MTR_3g057970 47.561 82 43 0 1 82 69 150 4.36e-20 82.8
MS.gene070401.t1 MTR_2g065360 44.578 83 46 0 1 83 42 124 5.01e-20 82.4
MS.gene070401.t1 MTR_1g023700 45.783 83 45 0 1 83 69 151 6.58e-20 82.4
MS.gene070401.t1 MTR_8g020940 42.169 83 48 0 1 83 71 153 7.17e-20 82.0
MS.gene070401.t1 MTR_3g057980 46.341 82 44 0 1 82 72 153 9.14e-20 82.0
MS.gene070401.t1 MTR_1g035190 42.169 83 48 0 1 83 56 138 1.32e-19 81.3
MS.gene070401.t1 MTR_5g018480 45.000 80 44 0 3 82 79 158 1.96e-19 80.1
MS.gene070401.t1 MTR_3g057800 38.554 83 51 0 1 83 71 153 2.49e-19 80.5
MS.gene070401.t1 MTR_1g023720 45.783 83 45 0 1 83 68 150 3.17e-19 80.5
MS.gene070401.t1 MTR_7g012330 43.210 81 46 0 3 83 72 152 3.47e-19 80.1
MS.gene070401.t1 MTR_3g057860 38.554 83 51 0 1 83 72 154 4.27e-19 80.1
MS.gene070401.t1 MTR_5g073250 40.964 83 49 0 1 83 75 157 4.94e-19 79.7
MS.gene070401.t1 MTR_5g018990 36.145 83 53 0 1 83 73 155 9.81e-19 79.0
MS.gene070401.t1 MTR_0171s0010 42.169 83 48 0 1 83 72 154 1.36e-18 78.6
MS.gene070401.t1 MTR_5g094540 43.373 83 47 0 1 83 75 157 1.60e-18 78.6
MS.gene070401.t1 MTR_3g057910 39.759 83 50 0 1 83 73 155 4.09e-18 77.4
MS.gene070401.t1 MTR_7g092620 38.554 83 51 0 1 83 69 151 7.57e-18 76.6
MS.gene070401.t1 MTR_5g070690 42.169 83 48 0 1 83 70 152 7.72e-18 76.6
MS.gene070401.t1 MTR_5g070800 42.169 83 48 0 1 83 70 152 7.72e-18 76.6
MS.gene070401.t1 MTR_5g094520 39.759 83 50 0 1 83 1 83 1.04e-17 75.9
MS.gene070401.t1 MTR_6g084770 42.169 83 48 0 1 83 72 154 1.15e-17 75.9
MS.gene070401.t1 MTR_5g094520 39.759 83 50 0 1 83 106 188 1.19e-17 75.9
MS.gene070401.t1 MTR_3g058390 39.759 83 50 0 1 83 71 153 1.84e-17 75.5
MS.gene070401.t1 MTR_3g058230 38.554 83 51 0 1 83 1 83 2.21e-17 75.1
MS.gene070401.t1 MTR_3g058220 39.759 83 50 0 1 83 72 154 2.37e-17 75.1
MS.gene070401.t1 MTR_2g010530 39.759 83 50 0 1 83 70 152 2.39e-17 75.1
MS.gene070401.t1 MTR_0155s0010 43.210 81 46 0 3 83 54 134 2.64e-17 71.2
MS.gene070401.t1 MTR_0059s0170 37.349 83 52 0 1 83 73 155 2.66e-17 75.1
MS.gene070401.t1 MTR_8g468780 39.759 83 50 0 1 83 1 83 2.86e-17 74.7
MS.gene070401.t1 MTR_0554s0020 37.349 83 52 0 1 83 73 155 2.91e-17 74.7
MS.gene070401.t1 MTR_8g020950 39.759 83 50 0 1 83 73 155 3.28e-17 74.7
MS.gene070401.t1 MTR_5g073230 48.000 75 38 1 1 75 78 151 3.38e-17 74.7
MS.gene070401.t1 MTR_5g070700 40.964 83 49 0 1 83 72 154 3.47e-17 74.7
MS.gene070401.t1 MTR_5g019010 34.940 83 54 0 1 83 72 154 3.74e-17 74.3
MS.gene070401.t1 MTR_4g102310 44.444 81 45 0 3 83 76 156 4.69e-17 74.3
MS.gene070401.t1 MTR_5g018980 37.349 83 52 0 1 83 72 154 5.07e-17 73.9
MS.gene070401.t1 MTR_5g094550 38.554 83 51 0 1 83 75 157 5.32e-17 73.9
MS.gene070401.t1 MTR_3g058250 38.554 83 51 0 1 83 71 153 6.85e-17 73.9
MS.gene070401.t1 MTR_8g012585 41.250 80 47 0 3 82 11 90 1.12e-16 73.2
MS.gene070401.t1 MTR_3g058240 39.759 83 50 0 1 83 37 119 1.12e-16 73.2
MS.gene070401.t1 MTR_4g104540 39.759 83 50 0 1 83 1 83 1.27e-16 72.8
MS.gene070401.t1 MTR_5g095290 38.554 83 51 0 1 83 77 159 1.29e-16 72.8
MS.gene070401.t1 MTR_3g058210 38.554 83 51 0 1 83 73 155 1.46e-16 72.8
MS.gene070401.t1 MTR_5g095260 38.554 83 51 0 1 83 77 159 1.80e-16 72.4
MS.gene070401.t1 MTR_1g035140 37.349 83 52 0 1 83 73 155 2.01e-16 72.4
MS.gene070401.t1 MTR_6g039630 42.169 83 48 0 1 83 70 152 2.02e-16 71.6
MS.gene070401.t1 MTR_8g466180 42.169 83 48 0 1 83 70 152 2.11e-16 72.4
MS.gene070401.t1 MTR_5g070980 42.105 76 44 0 1 76 72 147 2.51e-16 70.5
MS.gene070401.t1 MTR_3g058000 40.964 83 49 0 1 83 74 156 3.47e-16 71.6
MS.gene070401.t1 MTR_5g094660 38.554 83 51 0 1 83 75 157 3.78e-16 71.6
MS.gene070401.t1 MTR_5g094570 39.759 83 50 0 1 83 75 157 5.06e-16 71.2
MS.gene070401.t1 MTR_7g056103 38.554 83 51 0 1 83 69 151 5.13e-16 71.2
MS.gene070401.t1 MTR_3g058110 42.169 83 48 0 1 83 74 156 5.49e-16 71.2
MS.gene070401.t1 MTR_4g102280 45.679 81 44 0 3 83 81 161 5.54e-16 71.2
MS.gene070401.t1 MTR_6g008530 38.750 80 49 0 3 82 80 159 5.84e-16 71.2
MS.gene070401.t1 MTR_4g133750 36.145 83 53 0 1 83 75 157 5.92e-16 71.2
MS.gene070401.t1 MTR_6g035115 39.759 83 50 0 1 83 73 155 6.34e-16 70.9
MS.gene070401.t1 MTR_8g469300 37.349 83 52 0 1 83 70 152 7.21e-16 70.9
MS.gene070401.t1 MTR_3g058060 39.759 83 50 0 1 83 74 156 9.40e-16 70.5
MS.gene070401.t1 MTR_5g070710 40.964 83 49 0 1 83 71 153 9.65e-16 70.5
MS.gene070401.t1 MTR_1g442730 38.554 83 51 0 1 83 70 152 1.24e-15 70.1
MS.gene070401.t1 MTR_7g092600 38.554 83 51 0 1 83 74 156 1.50e-15 70.1
MS.gene070401.t1 MTR_4g471620 31.707 82 56 0 2 83 73 154 1.74e-15 67.8
MS.gene070401.t1 MTR_5g021390 35.802 81 52 0 2 82 80 160 1.77e-15 69.7
MS.gene070401.t1 MTR_3g076530 37.349 83 52 0 1 83 75 157 1.97e-15 69.7
MS.gene070401.t1 MTR_5g094535 38.462 78 48 0 1 78 75 152 1.98e-15 68.2
MS.gene070401.t1 MTR_3g058400 36.145 83 53 0 1 83 73 155 2.01e-15 69.7
MS.gene070401.t1 MTR_4g088415 39.506 81 49 0 3 83 83 163 3.25e-15 68.9
MS.gene070401.t1 MTR_4g088425 35.802 81 52 0 3 83 78 158 3.33e-15 68.9
MS.gene070401.t1 MTR_4g071710 31.707 82 56 0 2 83 73 154 3.34e-15 68.9
MS.gene070401.t1 MTR_7g012860 41.975 81 47 0 3 83 71 151 3.60e-15 68.9
MS.gene070401.t1 MTR_0287s0060 41.975 81 47 0 3 83 71 151 3.60e-15 68.9
MS.gene070401.t1 MTR_8g076290 33.333 81 54 0 2 82 71 151 3.86e-15 68.9
MS.gene070401.t1 MTR_5g070920 39.759 83 50 0 1 83 72 154 4.05e-15 68.6
MS.gene070401.t1 MTR_5g073320 36.145 83 53 0 1 83 76 158 4.82e-15 68.6
MS.gene070401.t1 MTR_5g094840 36.145 83 53 0 1 83 80 162 4.83e-15 68.6
MS.gene070401.t1 MTR_5g470730 40.244 82 49 0 1 82 72 153 4.85e-15 68.6
MS.gene070401.t1 MTR_6g035100 33.735 83 55 0 1 83 73 155 4.91e-15 68.6
MS.gene070401.t1 MTR_4g026070 40.741 81 48 0 3 83 67 147 5.12e-15 68.2
MS.gene070401.t1 MTR_4g035330 41.975 81 47 0 3 83 68 148 6.63e-15 68.2
MS.gene070401.t1 MTR_8g020960 39.759 83 50 0 1 83 72 154 6.86e-15 68.2
MS.gene070401.t1 MTR_6g462640 37.349 83 52 0 1 83 71 153 7.63e-15 67.8
MS.gene070401.t1 MTR_0171s0020 34.940 83 54 0 1 83 72 154 1.34e-14 67.4
MS.gene070401.t1 MTR_5g073240 42.254 71 41 0 1 71 119 189 1.45e-14 65.5
MS.gene070401.t1 MTR_0181s0030 38.554 83 51 0 1 83 69 151 1.48e-14 67.0
MS.gene070401.t1 MTR_2g073420 43.902 82 46 0 1 82 79 160 1.61e-14 67.0
MS.gene070401.t1 MTR_4g088400 37.037 81 51 0 3 83 85 165 2.35e-14 66.6
MS.gene070401.t1 MTR_4g094772 42.105 76 44 0 3 78 71 146 2.63e-14 66.2
MS.gene070401.t1 MTR_4g104550 36.145 83 53 0 1 83 63 145 3.10e-14 66.2
MS.gene070401.t1 MTR_5g070850 38.554 83 51 0 1 83 72 154 3.43e-14 66.2
MS.gene070401.t1 MTR_4g062500 35.366 82 53 0 1 82 70 151 3.71e-14 65.9
MS.gene070401.t1 MTR_5g094560 34.940 83 54 0 1 83 75 157 4.08e-14 65.9
MS.gene070401.t1 MTR_8g046240 40.964 83 49 0 1 83 76 158 6.65e-14 65.1
MS.gene070401.t1 MTR_0171s0030 37.879 66 41 0 18 83 1 66 6.95e-14 65.1
MS.gene070401.t1 MTR_6g034965 32.530 83 56 0 1 83 73 155 1.49e-13 64.3
MS.gene070401.t1 MTR_8g046210 39.759 83 50 0 1 83 76 158 1.70e-13 63.9
MS.gene070401.t1 MTR_1g055325 39.024 82 50 0 1 82 89 170 1.83e-13 63.9
MS.gene070401.t1 MTR_5g016440 35.802 81 52 0 3 83 68 148 1.85e-13 63.9
MS.gene070401.t1 MTR_4g048580 36.145 83 53 0 1 83 75 157 1.92e-13 63.9
MS.gene070401.t1 MTR_4g062510 31.707 82 56 0 1 82 72 153 2.83e-13 63.5
MS.gene070401.t1 MTR_5g072980 34.940 83 54 0 1 83 69 151 3.74e-13 63.2
MS.gene070401.t1 MTR_5g072930 34.940 83 54 0 1 83 69 151 3.74e-13 63.2
MS.gene070401.t1 MTR_1g107295 30.488 82 57 0 1 82 73 154 4.38e-13 62.8
MS.gene070401.t1 MTR_6g008620 35.000 80 52 0 3 82 80 159 5.03e-13 62.8
MS.gene070401.t1 MTR_2g073480 39.024 82 50 0 1 82 1 82 5.29e-13 62.8
MS.gene070401.t1 MTR_2g073440 39.024 82 50 0 1 82 68 149 6.94e-13 62.4
MS.gene070401.t1 MTR_3g076550 40.909 66 39 0 18 83 88 153 7.15e-13 62.4
MS.gene070401.t1 MTR_4g133760 40.000 70 42 0 1 70 1 70 8.64e-13 62.0
MS.gene070401.t1 MTR_2g450040 30.864 81 56 0 3 83 78 158 9.38e-13 62.0
MS.gene070401.t1 MTR_7g087520 32.530 83 56 0 1 83 72 154 1.15e-12 61.6
MS.gene070401.t1 MTR_6g042610 36.250 80 51 0 3 82 73 152 1.21e-12 61.6
MS.gene070401.t1 MTR_4g104610 34.940 83 54 0 1 83 63 145 1.23e-12 61.6
MS.gene070401.t1 MTR_3g467200 36.620 71 45 0 3 73 90 160 1.72e-12 61.2
MS.gene070401.t1 MTR_1g107305 30.488 82 57 0 1 82 73 154 2.01e-12 60.8
MS.gene070401.t1 MTR_4g025980 34.568 81 53 0 3 83 68 148 2.65e-12 60.8
MS.gene070401.t1 MTR_5g073020 34.940 83 54 0 1 83 69 151 2.87e-12 60.5
MS.gene070401.t1 MTR_4g026050 37.037 81 51 0 3 83 67 147 2.90e-12 60.5
MS.gene070401.t1 MTR_3g076560 32.099 81 55 0 3 83 88 168 4.25e-12 60.1
MS.gene070401.t1 MTR_7g103450 34.568 81 53 0 3 83 83 163 4.46e-12 60.1
MS.gene070401.t1 MTR_4g062530 33.750 80 52 1 3 82 72 150 4.58e-12 60.1
MS.gene070401.t1 MTR_6g008600 32.500 80 54 0 3 82 79 158 4.65e-12 60.1
MS.gene070401.t1 MTR_4g025970 35.802 81 52 0 3 83 67 147 4.96e-12 60.1
MS.gene070401.t1 MTR_2g437880 39.506 81 49 0 3 83 69 149 5.06e-12 60.1
MS.gene070401.t1 MTR_4g078110 39.759 83 48 2 1 82 63 144 6.19e-12 59.7
MS.gene070401.t1 MTR_4g025950 35.802 81 52 0 3 83 67 147 6.57e-12 59.3
MS.gene070401.t1 MTR_4g089020 34.940 83 54 0 1 83 65 147 6.84e-12 59.7
MS.gene070401.t1 MTR_1g091003 37.349 83 52 0 1 83 69 151 9.33e-12 59.3
MS.gene070401.t1 MTR_4g089025 33.735 83 55 0 1 83 87 169 1.20e-11 58.9
MS.gene070401.t1 MTR_5g016410 34.568 81 53 0 3 83 69 149 1.23e-11 58.9
MS.gene070401.t1 MTR_4g077210 36.585 82 51 1 3 83 72 153 1.29e-11 58.9
MS.gene070401.t1 MTR_6g008430 33.750 80 52 1 3 82 78 156 1.32e-11 58.9
MS.gene070401.t1 MTR_1g111240 35.443 79 51 0 3 81 103 181 1.46e-11 58.5
MS.gene070401.t1 MTR_4g026200 33.333 81 54 0 3 83 67 147 1.58e-11 58.5
MS.gene070401.t1 MTR_5g023680 34.568 81 53 0 3 83 43 123 1.62e-11 58.5
MS.gene070401.t1 MTR_4g104660 36.145 83 53 0 1 83 81 163 1.65e-11 58.5
MS.gene070401.t1 MTR_7g028020 33.750 80 52 1 3 82 69 147 1.75e-11 58.5
MS.gene070401.t1 MTR_7g027960 33.750 80 52 1 3 82 69 147 1.89e-11 58.2
MS.gene070401.t1 MTR_3g058380 35.135 74 48 0 10 83 1 74 2.09e-11 58.2
MS.gene070401.t1 MTR_8g012590 28.049 82 59 0 2 83 76 157 2.32e-11 58.2
MS.gene070401.t1 MTR_5g007460 36.145 83 53 0 1 83 44 126 2.38e-11 58.2
MS.gene070401.t1 MTR_0608s0010 33.735 83 55 0 1 83 69 151 2.51e-11 57.8
MS.gene070401.t1 MTR_1g031700 33.735 83 55 0 1 83 69 151 2.61e-11 57.8
MS.gene070401.t1 MTR_0022s0290 31.325 83 57 0 1 83 76 158 3.64e-11 57.4
MS.gene070401.t1 MTR_5g045770 33.333 81 54 0 3 83 67 147 3.74e-11 57.4
MS.gene070401.t1 MTR_5g056720 38.272 81 50 0 3 83 34 114 7.90e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070401.t1 AT5G07990 74.699 83 21 0 1 83 68 150 6.38e-41 140
MS.gene070401.t1 AT1G13090 43.210 81 46 0 3 83 65 145 8.12e-21 83.6
MS.gene070401.t1 AT3G26210 42.169 83 48 0 1 83 66 148 1.87e-20 84.0
MS.gene070401.t1 AT1G13090 43.210 81 46 0 3 83 65 145 2.33e-20 83.6
MS.gene070401.t1 AT3G44250 44.444 81 45 0 3 83 65 145 6.52e-19 79.7
MS.gene070401.t1 AT3G53280 42.169 83 48 0 1 83 63 145 1.47e-18 78.6
MS.gene070401.t1 AT1G13100 39.506 81 49 0 3 83 62 142 2.06e-18 78.2
MS.gene070401.t1 AT4G31940 43.902 82 46 0 1 82 70 151 8.45e-18 76.3
MS.gene070401.t1 AT3G26330 39.759 83 50 0 1 83 66 148 6.07e-17 73.9
MS.gene070401.t1 AT3G26320 38.554 83 51 0 1 83 66 148 9.33e-17 73.6
MS.gene070401.t1 AT3G48290 42.169 83 48 0 1 83 68 150 1.22e-16 73.2
MS.gene070401.t1 AT3G48290 42.169 83 48 0 1 83 68 150 1.23e-16 73.2
MS.gene070401.t1 AT4G13770 37.349 83 52 0 1 83 66 148 1.25e-16 73.2
MS.gene070401.t1 AT3G25180 42.500 80 46 0 3 82 78 157 1.60e-16 72.8
MS.gene070401.t1 AT3G26300 39.024 82 50 0 1 82 66 147 1.83e-16 72.8
MS.gene070401.t1 AT4G31970 42.683 82 47 0 1 82 70 151 2.35e-16 72.4
MS.gene070401.t1 AT3G48280 36.145 83 53 0 1 83 65 147 2.49e-16 72.4
MS.gene070401.t1 AT3G25180 42.500 80 46 0 3 82 78 157 3.11e-16 72.0
MS.gene070401.t1 AT5G42590 38.554 83 51 0 1 83 67 149 7.03e-16 70.9
MS.gene070401.t1 AT3G26190 36.145 83 53 0 1 83 63 145 9.80e-16 70.5
MS.gene070401.t1 AT3G48320 39.759 83 50 0 1 83 67 149 1.04e-15 70.5
MS.gene070401.t1 AT3G26310 36.585 82 52 0 1 82 65 146 1.05e-15 70.5
MS.gene070401.t1 AT3G26280 38.554 83 51 0 1 83 67 149 1.26e-15 70.1
MS.gene070401.t1 AT3G26280 38.554 83 51 0 1 83 84 166 1.27e-15 70.1
MS.gene070401.t1 AT1G13110 36.145 83 53 0 1 83 67 149 1.28e-15 70.1
MS.gene070401.t1 AT3G26830 39.241 79 48 0 3 81 65 143 1.66e-15 69.7
MS.gene070401.t1 AT5G25130 37.349 83 52 0 1 83 64 146 2.86e-15 69.3
MS.gene070401.t1 AT5G25180 36.145 83 53 0 1 83 64 146 4.07e-15 68.9
MS.gene070401.t1 AT4G12310 43.210 81 46 0 3 83 81 161 4.92e-15 68.6
MS.gene070401.t1 AT3G48270 37.349 83 52 0 1 83 66 148 5.71e-15 68.2
MS.gene070401.t1 AT5G06900 35.366 82 53 0 1 82 69 150 8.31e-15 67.8
MS.gene070401.t1 AT3G48310 37.349 83 52 0 1 83 67 149 8.36e-15 67.8
MS.gene070401.t1 AT4G36220 34.568 81 53 0 2 82 76 156 1.14e-14 67.4
MS.gene070401.t1 AT3G26220 35.802 81 52 0 3 83 66 146 1.17e-14 67.4
MS.gene070401.t1 AT3G48300 38.554 83 51 0 1 83 64 146 1.28e-14 67.4
MS.gene070401.t1 AT3G48300 38.554 83 51 0 1 83 66 148 1.28e-14 67.4
MS.gene070401.t1 AT5G04330 39.535 86 46 1 1 80 67 152 1.29e-14 67.4
MS.gene070401.t1 AT4G37320 36.585 82 52 0 2 83 70 151 1.42e-14 67.4
MS.gene070401.t1 AT3G26180 36.145 83 53 0 1 83 65 147 2.78e-14 66.2
MS.gene070401.t1 AT3G26200 38.554 83 51 0 1 83 63 145 4.36e-14 65.9
MS.gene070401.t1 AT5G25120 36.145 83 53 0 1 83 64 146 4.40e-14 65.9
MS.gene070401.t1 AT1G13080 39.506 81 49 0 3 83 68 148 6.63e-14 65.5
MS.gene070401.t1 AT4G12300 43.210 81 46 0 3 83 79 159 8.81e-14 65.1
MS.gene070401.t1 AT1G11610 32.530 83 56 0 1 83 68 150 9.33e-14 65.1
MS.gene070401.t1 AT1G11610 32.530 83 56 0 1 83 68 150 9.69e-14 64.7
MS.gene070401.t1 AT4G20240 32.530 83 56 0 1 83 68 150 1.07e-13 64.7
MS.gene070401.t1 AT2G30750 32.530 83 56 0 1 83 68 150 1.13e-13 64.7
MS.gene070401.t1 AT4G20240 32.530 83 56 0 1 83 68 150 1.31e-13 64.3
MS.gene070401.t1 AT4G12320 39.506 81 49 0 3 83 79 159 1.85e-13 63.9
MS.gene070401.t1 AT4G37330 37.805 82 51 0 2 83 70 151 2.03e-13 63.9
MS.gene070401.t1 AT4G37430 40.244 82 48 1 3 83 65 146 2.45e-13 63.5
MS.gene070401.t1 AT3G28740 40.741 81 48 0 3 83 79 159 2.45e-13 63.5
MS.gene070401.t1 AT2G30770 31.325 83 57 0 1 83 68 150 2.65e-13 63.5
MS.gene070401.t1 AT2G45560 38.554 83 50 1 1 82 73 155 2.85e-13 62.8
MS.gene070401.t1 AT3G26170 33.735 83 55 0 1 83 65 147 3.38e-13 63.2
MS.gene070401.t1 AT5G67310 39.024 82 49 1 3 83 80 161 3.73e-13 63.2
MS.gene070401.t1 AT3G26270 33.735 83 55 0 1 83 67 149 4.85e-13 62.8
MS.gene070401.t1 AT4G37400 39.024 82 49 1 3 83 68 149 4.90e-13 62.8
MS.gene070401.t1 AT2G02580 40.964 83 49 0 1 83 66 148 5.14e-13 62.8
MS.gene070401.t1 AT3G26160 36.145 83 53 0 1 83 65 147 6.13e-13 62.8
MS.gene070401.t1 AT2G45560 38.554 83 50 1 1 82 73 155 7.11e-13 62.4
MS.gene070401.t1 AT4G37310 36.585 82 51 1 3 83 69 150 9.08e-13 62.0
MS.gene070401.t1 AT4G37370 37.037 81 51 0 3 83 70 150 9.88e-13 62.0
MS.gene070401.t1 AT2G45560 38.554 83 50 1 1 82 73 155 1.06e-12 61.6
MS.gene070401.t1 AT5G25140 33.735 83 55 0 1 83 64 146 1.49e-12 61.6
MS.gene070401.t1 AT2G45570 36.905 84 52 1 1 83 73 156 1.71e-12 61.2
MS.gene070401.t1 AT2G25160 42.466 73 41 1 4 76 74 145 1.82e-12 61.2
MS.gene070401.t1 AT5G36220 37.349 83 51 1 1 82 74 156 1.92e-12 61.2
MS.gene070401.t1 AT4G37410 38.554 83 50 1 2 83 67 149 2.02e-12 61.2
MS.gene070401.t1 AT2G25160 42.466 73 41 1 4 76 74 145 2.21e-12 60.8
MS.gene070401.t1 AT5G57260 32.530 83 56 0 1 83 65 147 2.65e-12 60.8
MS.gene070401.t1 AT2G23220 35.802 81 52 0 3 83 86 166 3.01e-12 60.5
MS.gene070401.t1 AT2G23190 35.802 81 52 0 3 83 115 195 3.50e-12 60.5
MS.gene070401.t1 AT3G20090 34.146 82 54 0 1 82 79 160 3.81e-12 60.5
MS.gene070401.t1 AT5G10610 31.325 83 57 0 1 83 68 150 3.91e-12 60.5
MS.gene070401.t1 AT3G32047 36.145 83 49 2 3 83 80 160 4.40e-12 60.1
MS.gene070401.t1 AT5G10600 31.707 82 56 0 1 82 82 163 4.86e-12 60.1
MS.gene070401.t1 AT3G53305 32.530 83 56 0 1 83 1 83 5.06e-12 59.7
MS.gene070401.t1 AT1G01280 32.927 82 55 0 1 82 67 148 5.85e-12 59.7
MS.gene070401.t1 AT3G26230 34.568 81 53 0 3 83 63 143 1.36e-11 58.9
MS.gene070401.t1 AT3G26290 34.146 82 54 0 1 82 66 147 1.49e-11 58.5
MS.gene070401.t1 AT3G26290 34.146 82 54 0 1 82 79 160 1.58e-11 58.5
MS.gene070401.t1 AT4G31500 34.568 81 53 0 3 83 67 147 1.61e-11 58.5
MS.gene070401.t1 AT2G05180 32.927 82 55 0 1 82 77 158 2.92e-11 57.8
MS.gene070401.t1 AT3G20960 32.927 82 55 0 1 82 77 158 3.43e-11 57.8
MS.gene070401.t1 AT5G24960 31.325 83 57 0 1 83 68 150 3.54e-11 57.4
MS.gene070401.t1 AT2G40890 32.911 79 53 0 5 83 66 144 3.66e-11 57.4
MS.gene070401.t1 AT5G24960 31.325 83 57 0 1 83 68 150 3.73e-11 57.4
MS.gene070401.t1 AT3G26150 34.568 81 53 0 1 81 65 145 4.62e-11 57.4
MS.gene070401.t1 AT5G24950 31.325 83 57 0 1 83 67 149 5.09e-11 57.0
MS.gene070401.t1 AT2G45580 35.366 82 53 0 1 82 73 154 7.84e-11 56.6
MS.gene070401.t1 AT2G45580 35.366 82 53 0 1 82 73 154 8.24e-11 56.6
MS.gene070401.t1 AT5G06905 30.120 83 58 0 1 83 66 148 9.37e-11 56.2
MS.gene070401.t1 AT4G22710 35.526 76 49 0 1 76 89 164 9.37e-11 56.2

Find 32 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTTGTGTTTGGTCCTTA+TGG 0.151855 3.2:-28391179 MS.gene070401:CDS
CCTCTTCTCCAACCAATCTT+TGG 0.215088 3.2:-28391117 MS.gene070401:CDS
CCTTTGATGCACCTCAAATT+AGG 0.249661 3.2:-28391326 None:intergenic
CGTGGCGGAACAATTCTTAA+AGG 0.260053 3.2:-28391270 MS.gene070401:CDS
TTCTGAGCAGTCGCCACCTT+GGG 0.353936 3.2:+28391156 None:intergenic
AATTATCAAGACCTTGTGTT+TGG 0.382639 3.2:-28391188 MS.gene070401:CDS
GTTTAAATTCATCCAAAGAT+TGG 0.385611 3.2:+28391105 None:intergenic
ATGTATTTAGCTCCGGCATT+GGG 0.418866 3.2:+28391218 None:intergenic
AGTCGCCACCTTGGGCCATA+AGG 0.470098 3.2:+28391164 None:intergenic
TGAATTTAAACACTTACGTC+AGG 0.473026 3.2:-28391093 None:intergenic
TAGCTCCGGCATTGGGTGGC+CGG 0.481188 3.2:+28391225 None:intergenic
TATGTATTTAGCTCCGGCAT+TGG 0.487638 3.2:+28391217 None:intergenic
ATAACCTATGTATTTAGCTC+CGG 0.488252 3.2:+28391211 None:intergenic
CCAAAGATTGGTTGGAGAAG+AGG 0.502451 3.2:+28391117 None:intergenic
AGTAGCCGGCCACCCAATGC+CGG 0.510923 3.2:-28391230 MS.gene070401:CDS
AAATTCATCCAAAGATTGGT+TGG 0.521334 3.2:+28391109 None:intergenic
TGTTTGGTCCTTATGGCCCA+AGG 0.533141 3.2:-28391172 MS.gene070401:CDS
TTTCTGAGCAGTCGCCACCT+TGG 0.539451 3.2:+28391155 None:intergenic
ATGATGCTAACTTTAGTAGC+CGG 0.544368 3.2:-28391244 MS.gene070401:CDS
CATCCACCGAGCCTAATTTG+AGG 0.549589 3.2:+28391315 None:intergenic
GATGCACCTCAAATTAGGCT+CGG 0.578037 3.2:-28391321 MS.gene070401:CDS
TATTTAGCTCCGGCATTGGG+TGG 0.584504 3.2:+28391221 None:intergenic
CTTTAAGAATTGTTCCGCCA+CGG 0.603525 3.2:+28391271 None:intergenic
GGCCATAAGGACCAAACACA+AGG 0.621215 3.2:+28391177 None:intergenic
AGGCTCGGTGGATGTGATCG+TGG 0.623751 3.2:-28391306 MS.gene070401:CDS
GGCGGCTTCAGCCTCCGTGG+CGG 0.625572 3.2:-28391285 MS.gene070401:CDS
AATGCCGGAGCTAAATACAT+AGG 0.626575 3.2:-28391215 MS.gene070401:CDS
GCACCTCAAATTAGGCTCGG+TGG 0.648549 3.2:-28391318 MS.gene070401:CDS
CGTGGCGGCTTCAGCCTCCG+TGG 0.653028 3.2:-28391288 MS.gene070401:CDS
TTGGTCCTTATGGCCCAAGG+TGG 0.676148 3.2:-28391169 MS.gene070401:CDS
CTCGGTGGATGTGATCGTGG+CGG 0.690634 3.2:-28391303 MS.gene070401:CDS
TAAGAATTGTTCCGCCACGG+AGG 0.722603 3.2:+28391274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GTTTAAATTCATCCAAAGAT+TGG + chr3.2:28391312-28391331 None:intergenic 25.0%
AAATTCATCCAAAGATTGGT+TGG + chr3.2:28391308-28391327 None:intergenic 30.0%
AATTATCAAGACCTTGTGTT+TGG - chr3.2:28391226-28391245 MS.gene070401:CDS 30.0%
! ATAACCTATGTATTTAGCTC+CGG + chr3.2:28391206-28391225 None:intergenic 30.0%
ATGATGCTAACTTTAGTAGC+CGG - chr3.2:28391170-28391189 MS.gene070401:CDS 35.0%
AATGCCGGAGCTAAATACAT+AGG - chr3.2:28391199-28391218 MS.gene070401:CDS 40.0%
! ATGTATTTAGCTCCGGCATT+GGG + chr3.2:28391199-28391218 None:intergenic 40.0%
! CTTTAAGAATTGTTCCGCCA+CGG + chr3.2:28391146-28391165 None:intergenic 40.0%
! TATGTATTTAGCTCCGGCAT+TGG + chr3.2:28391200-28391219 None:intergenic 40.0%
CCTCTTCTCCAACCAATCTT+TGG - chr3.2:28391297-28391316 MS.gene070401:CDS 45.0%
GACCTTGTGTTTGGTCCTTA+TGG - chr3.2:28391235-28391254 MS.gene070401:CDS 45.0%
! CCAAAGATTGGTTGGAGAAG+AGG + chr3.2:28391300-28391319 None:intergenic 45.0%
! CGTGGCGGAACAATTCTTAA+AGG - chr3.2:28391144-28391163 MS.gene070401:CDS 45.0%
CATCCACCGAGCCTAATTTG+AGG + chr3.2:28391102-28391121 None:intergenic 50.0%
GGCCATAAGGACCAAACACA+AGG + chr3.2:28391240-28391259 None:intergenic 50.0%
TAAGAATTGTTCCGCCACGG+AGG + chr3.2:28391143-28391162 None:intergenic 50.0%
TGTTTGGTCCTTATGGCCCA+AGG - chr3.2:28391242-28391261 MS.gene070401:CDS 50.0%
! TATTTAGCTCCGGCATTGGG+TGG + chr3.2:28391196-28391215 None:intergenic 50.0%
GCACCTCAAATTAGGCTCGG+TGG - chr3.2:28391096-28391115 MS.gene070401:CDS 55.0%
TTCTGAGCAGTCGCCACCTT+GGG + chr3.2:28391261-28391280 None:intergenic 55.0%
TTGGTCCTTATGGCCCAAGG+TGG - chr3.2:28391245-28391264 MS.gene070401:CDS 55.0%
TTTCTGAGCAGTCGCCACCT+TGG + chr3.2:28391262-28391281 None:intergenic 55.0%
AGTCGCCACCTTGGGCCATA+AGG + chr3.2:28391253-28391272 None:intergenic 60.0%
CTCGGTGGATGTGATCGTGG+CGG - chr3.2:28391111-28391130 MS.gene070401:CDS 60.0%
!! AGGCTCGGTGGATGTGATCG+TGG - chr3.2:28391108-28391127 MS.gene070401:CDS 60.0%
AGTAGCCGGCCACCCAATGC+CGG - chr3.2:28391184-28391203 MS.gene070401:CDS 65.0%
! TAGCTCCGGCATTGGGTGGC+CGG + chr3.2:28391192-28391211 None:intergenic 65.0%
CGTGGCGGCTTCAGCCTCCG+TGG - chr3.2:28391126-28391145 MS.gene070401:CDS 75.0%
GGCGGCTTCAGCCTCCGTGG+CGG - chr3.2:28391129-28391148 MS.gene070401:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 28391094 28391342 28391094 ID=MS.gene070401
chr3.2 mRNA 28391094 28391342 28391094 ID=MS.gene070401.t1;Parent=MS.gene070401
chr3.2 exon 28391094 28391342 28391094 ID=MS.gene070401.t1.exon1;Parent=MS.gene070401.t1
chr3.2 CDS 28391094 28391342 28391094 ID=cds.MS.gene070401.t1;Parent=MS.gene070401.t1
Gene Sequence

>MS.gene070401

ATGCACCTCAAATTAGGCTCGGTGGATGTGATCGTGGCGGCTTCAGCCTCCGTGGCGGAACAATTCTTAAAGGTTCATGATGCTAACTTTAGTAGCCGGCCACCCAATGCCGGAGCTAAATACATAGGTTATAATTATCAAGACCTTGTGTTTGGTCCTTATGGCCCAAGGTGGCGACTGCTCAGAAAAATCACTACTGTTCACCTCTTCTCCAACCAATCTTTGGATGAATTTAAACACTTACGTCAG
Protein sequence

>MS.gene070401.t1

MHLKLGSVDVIVAASASVAEQFLKVHDANFSSRPPNAGAKYIGYNYQDLVFGPYGPRWRLLRKITTVHLFSNQSLDEFKHLRQ