AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050593


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050593.t1 MTR_7g116630 98.158 380 7 0 1 380 81 460 0.0 771
MS.gene050593.t1 MTR_7g116630 93.075 361 24 1 21 380 3 363 0.0 680
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050593.t1 AT1G08550 78.862 369 77 1 13 380 94 462 0.0 599
MS.gene050593.t1 AT1G08550 78.862 369 77 1 13 380 94 462 0.0 599
MS.gene050593.t1 AT1G08550 78.862 369 77 1 13 380 94 462 0.0 599

Find 92 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGTGAAATTCATGTAAT+TGG 0.253755 7.3:-1505694 None:intergenic
CTGGTCTATTGTTGCAAGTT+TGG 0.257638 7.3:-1505319 None:intergenic
TGATGGAACAATCATTAAAA+TGG 0.294429 7.3:-1503881 None:intergenic
GATGAGGAAAATTTCTTAAG+AGG 0.305895 7.3:+1506904 MS.gene050593:CDS
CATTAAAATGGAAACCAATA+TGG 0.319532 7.3:-1503869 None:intergenic
TAAAGAAGAAATGGAGATAC+TGG 0.333234 7.3:+1506933 MS.gene050593:CDS
TGTGGAAAGGCTGGAGAAAA+AGG 0.341274 7.3:+1506744 MS.gene050593:CDS
GATACTGGACAGTCTCAAAT+TGG 0.354853 7.3:+1506948 MS.gene050593:CDS
AGGGTTATCTAAAGAAGAAA+TGG 0.355152 7.3:+1506924 MS.gene050593:CDS
AATCCAAGTAGCTGCCATAT+TGG 0.365045 7.3:+1503855 MS.gene050593:CDS
TGAAGAGTTAGAAGAGGAGG+TGG 0.376505 7.3:+1506801 MS.gene050593:CDS
GAGGAAGTAGAAGAGCTCTT+TGG 0.381319 7.3:+1506976 MS.gene050593:CDS
TCATGATTATAGAGGATTCC+TGG 0.387098 7.3:-1505821 None:intergenic
TGCTTGTTGTTCTTGAAGAT+TGG 0.391049 7.3:+1503818 MS.gene050593:CDS
TCTCCCACATCAGATTTCTT+AGG 0.394772 7.3:-1505560 None:intergenic
TTACGTACGCAGGGTAGAAT+TGG 0.398619 7.3:+1505250 MS.gene050593:intron
TTCACAAGGACATCCGGGTT+TGG 0.405604 7.3:-1505593 None:intergenic
AAGCTCTTCACAAGGACATC+CGG 0.409378 7.3:-1505599 None:intergenic
ACAGAATCAAATAAACTTGT+TGG 0.412183 7.3:+1505713 MS.gene050593:CDS
TTTGCCGCTCTATCAAGTTC+AGG 0.417424 7.3:-1506655 None:intergenic
ACCAGTCATCTTGATAGTTA+AGG 0.425692 7.3:-1505853 None:intergenic
GTTAGAAGAGGAGGTGGAGA+AGG 0.433135 7.3:+1506807 MS.gene050593:CDS
ACTCATTATCATGATTATAG+AGG 0.437878 7.3:-1505829 None:intergenic
AGTTCAGGAATAATAGATTC+AGG 0.446993 7.3:-1506640 None:intergenic
GTTCAAGATCCTTCATATCC+AGG 0.447140 7.3:+1505803 MS.gene050593:CDS
CAGAAATGACCTTGTTAGAA+AGG 0.448118 7.3:+1506851 MS.gene050593:CDS
GCCTTCCATTGTGGAAAGGC+TGG 0.448724 7.3:+1506735 MS.gene050593:CDS
ATGAGGAAAATTTCTTAAGA+GGG 0.453670 7.3:+1506905 MS.gene050593:CDS
CCCAGGCATCGTTTCTGCCT+CGG 0.454906 7.3:-1506573 None:intergenic
AAACCAATATGGCAGCTACT+TGG 0.458398 7.3:-1503858 None:intergenic
AGGACATCCGGGTTTGGAAC+AGG 0.461375 7.3:-1505587 None:intergenic
CAGATGGTGGATTTCTTACA+AGG 0.464565 7.3:+1505762 MS.gene050593:CDS
AGAAGAGGAGGTGGAGAAGG+AGG 0.466120 7.3:+1506810 MS.gene050593:CDS
AATGACCTTGTTAGAAAGGC+TGG 0.466564 7.3:+1506855 MS.gene050593:CDS
ACCGAGGCAGAAACGATGCC+TGG 0.468845 7.3:+1506572 MS.gene050593:CDS
TATATAAATATATAATCATC+TGG 0.469487 7.3:-1506547 None:intergenic
ACTTGGCATTCAGTCTCATC+TGG 0.476003 7.3:-1505338 None:intergenic
GAGAAGGAGGTAGAGAAGGT+TGG 0.481401 7.3:+1506823 MS.gene050593:CDS
TCCAGCCTTTCCACAATGGA+AGG 0.485251 7.3:-1506736 None:intergenic
CTTGTAAGAAATCCACCATC+TGG 0.490114 7.3:-1505761 None:intergenic
AGCTCTTCACAAGGACATCC+GGG 0.492212 7.3:-1505598 None:intergenic
TTGGACGTGCCTTGCCGCTA+AGG 0.495177 7.3:+1506995 MS.gene050593:CDS
GGTGGAGAAGGAGGTAGAGA+AGG 0.496841 7.3:+1506819 MS.gene050593:CDS
AGAATTTCCTGTTCCAAACC+CGG 0.504891 7.3:+1505580 MS.gene050593:CDS
CTTTCCACAATGGAAGGCTC+TGG 0.512849 7.3:-1506730 None:intergenic
TAGAGGATTCCTGGATATGA+AGG 0.513757 7.3:-1505812 None:intergenic
GCAATGTTGGCAGCACATGA+TGG 0.519953 7.3:-1505290 None:intergenic
CAGTCAAAGGCATCGAATGT+AGG 0.522113 7.3:-1505671 None:intergenic
TAAAGTGTTTCAAGAAGATG+AGG 0.526393 7.3:+1506888 MS.gene050593:CDS
TTCTGCCAGCCTTTCTAACA+AGG 0.527062 7.3:-1506860 None:intergenic
AGTTATCTTAGTTTCCTTAG+CGG 0.539269 7.3:-1507009 None:intergenic
GGCAGAAACGATGCCTGGGA+TGG 0.540731 7.3:+1506577 MS.gene050593:CDS
AGTTTGGAGACAAGCAATGT+TGG 0.543150 7.3:-1505303 None:intergenic
CAATGTTGGCAGCACATGAT+GGG 0.546394 7.3:-1505289 None:intergenic
GGAAGTTGAAGAGTTAGAAG+AGG 0.548339 7.3:+1506795 MS.gene050593:CDS
ACCTTAACTATCAAGATGAC+TGG 0.550190 7.3:+1505852 MS.gene050593:CDS
TTCATGTAATTGGCAGTCAA+AGG 0.550423 7.3:-1505684 None:intergenic
AGTTGAAGAGTTAGAAGAGG+AGG 0.551351 7.3:+1506798 MS.gene050593:CDS
GCATCAACAGCATCAGCTGA+TGG 0.551936 7.3:-1503898 None:intergenic
TTGTTAGAAAGGCTGGCAGA+AGG 0.560265 7.3:+1506862 MS.gene050593:CDS
TCTTAGTTTCCTTAGCGGCA+AGG 0.562825 7.3:-1507004 None:intergenic
TGTTAGAAAGGCTGGCAGAA+GGG 0.570141 7.3:+1506863 MS.gene050593:CDS
GGCACCACCATAGCCATCCC+AGG 0.571683 7.3:-1506590 None:intergenic
AGAAATCCACCATCTGGAGT+TGG 0.580800 7.3:-1505755 None:intergenic
AACGATGCCTGGGATGGCTA+TGG 0.580936 7.3:+1506583 MS.gene050593:CDS
CTCTTCAACTTCCCTCACAA+TGG 0.580964 7.3:-1506785 None:intergenic
CAGTCTCAAATTGGAAGCTG+AGG 0.583038 7.3:+1506957 MS.gene050593:CDS
TTTCTCCAGCCTTTCCACAA+TGG 0.585799 7.3:-1506740 None:intergenic
GATAGAGCGGCAAAGAGTGT+AGG 0.589849 7.3:+1506664 MS.gene050593:CDS
ATCTTGAACAAATTTCTGCA+CGG 0.591441 7.3:-1505789 None:intergenic
CTTGTTTGCTCAAAGAATGC+AGG 0.593029 7.3:+1503935 MS.gene050593:CDS
GGCAAGTGGTTCATCACTAG+TGG 0.595900 7.3:+1505641 MS.gene050593:CDS
TATTCCTGAACTTGATAGAG+CGG 0.601431 7.3:+1506651 MS.gene050593:CDS
CCGAGGCAGAAACGATGCCT+GGG 0.602451 7.3:+1506573 MS.gene050593:CDS
TGGACCAGAGCCTTCCATTG+TGG 0.604287 7.3:+1506726 MS.gene050593:CDS
AACTTGTTGGTAATATAACA+TGG 0.607222 7.3:+1505726 MS.gene050593:CDS
AGGAGAGAAAACCATTGTGA+GGG 0.613949 7.3:+1506774 MS.gene050593:CDS
CAGAGCCTTCCATTGTGGAA+AGG 0.614887 7.3:+1506731 MS.gene050593:CDS
TCAATGAGTGCGCTGTATCG+AGG 0.615628 7.3:+1505525 MS.gene050593:CDS
CAATATTAAAGCTCTTCACA+AGG 0.624985 7.3:-1505607 None:intergenic
GATGCCTGGGATGGCTATGG+TGG 0.626359 7.3:+1506586 MS.gene050593:CDS
TGGAGGATACCAACTCCAGA+TGG 0.629230 7.3:+1505746 MS.gene050593:CDS
AAGGAGAGAAAACCATTGTG+AGG 0.639539 7.3:+1506773 MS.gene050593:CDS
ATCAGAACAGATAACACATG+TGG 0.650232 7.3:+1506706 MS.gene050593:CDS
AGGATACCAACTCCAGATGG+TGG 0.651782 7.3:+1505749 MS.gene050593:CDS
TATATATTTATATACTACCG+AGG 0.662016 7.3:+1506556 MS.gene050593:CDS
TGTGCCTAAGAAATCTGATG+TGG 0.670104 7.3:+1505556 MS.gene050593:CDS
TGCACTCCTTGTGTACACAA+CGG 0.678381 7.3:-1506611 None:intergenic
GTGGTGCCGTTGTGTACACA+AGG 0.721149 7.3:+1506605 MS.gene050593:CDS
GTGCCTAAGAAATCTGATGT+GGG 0.729699 7.3:+1505557 MS.gene050593:CDS
GGACGTGTTTGAAAACAAAG+TGG 0.737758 7.3:+1505493 MS.gene050593:CDS
TTGTTGGTAATATAACATGG+AGG 0.766559 7.3:+1505729 MS.gene050593:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAATATATAATCATC+TGG - chr7.3:1506550-1506569 None:intergenic 10.0%
!!! TTATCTTTTATTATAGAAAT+AGG - chr7.3:1506126-1506145 None:intergenic 10.0%
!!! GAAATTGATTTTAATTTGTT+TGG + chr7.3:1504890-1504909 MS.gene050593:intron 15.0%
!!! TAATTTTATAGATCAAATGT+GGG + chr7.3:1505471-1505490 MS.gene050593:intron 15.0%
!! AAGGTAAAATGATTTATGTT+TGG - chr7.3:1504367-1504386 None:intergenic 20.0%
!! GTGAATTGATTATGTATAAT+TGG - chr7.3:1504411-1504430 None:intergenic 20.0%
!! TATATATTTATATACTACCG+AGG + chr7.3:1506556-1506575 MS.gene050593:CDS 20.0%
!!! AAAATTGATTTTGACATGTT+TGG - chr7.3:1504574-1504593 None:intergenic 20.0%
!!! AATTTTATAGATCAAATGTG+GGG + chr7.3:1505472-1505491 MS.gene050593:intron 20.0%
!!! ATTGATTTTGATATGTTTGA+AGG - chr7.3:1505077-1505096 None:intergenic 20.0%
!!! GTAATTTTATAGATCAAATG+TGG + chr7.3:1505470-1505489 MS.gene050593:intron 20.0%
!!! TTTAATATTGCAGATTTTAG+TGG + chr7.3:1505620-1505639 MS.gene050593:CDS 20.0%
! AAAAACTAAGCACTAACATT+TGG - chr7.3:1503989-1504008 None:intergenic 25.0%
! ACAGAATCAAATAAACTTGT+TGG + chr7.3:1505713-1505732 MS.gene050593:CDS 25.0%
! ACAGACTTCAACAAATATAA+AGG - chr7.3:1506457-1506476 None:intergenic 25.0%
! ACTCATTATCATGATTATAG+AGG - chr7.3:1505832-1505851 None:intergenic 25.0%
! ATGAGGAAAATTTCTTAAGA+GGG + chr7.3:1506905-1506924 MS.gene050593:CDS 25.0%
! CAATGAAATATGAATGGTAA+AGG - chr7.3:1505392-1505411 None:intergenic 25.0%
! CATTAAAATGGAAACCAATA+TGG - chr7.3:1503872-1503891 None:intergenic 25.0%
! CATTTGGCAATAAAAAAAAC+AGG - chr7.3:1503973-1503992 None:intergenic 25.0%
! CTAATGTATTAGTATGTGTA+TGG - chr7.3:1505189-1505208 None:intergenic 25.0%
! CTTGAAGTTAGAATCAATTA+TGG + chr7.3:1504520-1504539 MS.gene050593:intron 25.0%
! TAGAGTTAATTCTACTTTGA+AGG - chr7.3:1505023-1505042 None:intergenic 25.0%
! TCAAAGTAGAATTAACTCTA+GGG + chr7.3:1505023-1505042 MS.gene050593:intron 25.0%
! TGATGGAACAATCATTAAAA+TGG - chr7.3:1503884-1503903 None:intergenic 25.0%
! TTCAAAGTAGAATTAACTCT+AGG + chr7.3:1505022-1505041 MS.gene050593:intron 25.0%
!! ATTGATTCTAACTTGAAGTT+AGG + chr7.3:1504946-1504965 MS.gene050593:intron 25.0%
!! ATTTTGAATAGCAAAATGCT+AGG - chr7.3:1505977-1505996 None:intergenic 25.0%
!! CTGATTTTAAATCCTCTATA+TGG - chr7.3:1506486-1506505 None:intergenic 25.0%
!!! AACTTGTTGGTAATATAACA+TGG + chr7.3:1505726-1505745 MS.gene050593:CDS 25.0%
!!! ATGTTAGTGCTTAGTTTTTT+AGG + chr7.3:1503990-1504009 MS.gene050593:intron 25.0%
!!! TAGCATTTTGCTATTCAAAA+TGG + chr7.3:1505976-1505995 MS.gene050593:intron 25.0%
!!! TGTTAGTGCTTAGTTTTTTA+GGG + chr7.3:1503991-1504010 MS.gene050593:intron 25.0%
AATAAGCTGAAAACAGCTTA+TGG + chr7.3:1506214-1506233 MS.gene050593:intron 30.0%
AATCATGAATTCTCATACAC+TGG - chr7.3:1506390-1506409 None:intergenic 30.0%
AGATGGGTCAAAATTGATTA+TGG + chr7.3:1504201-1504220 MS.gene050593:intron 30.0%
AGGGTTATCTAAAGAAGAAA+TGG + chr7.3:1506924-1506943 MS.gene050593:CDS 30.0%
AGTTCAGGAATAATAGATTC+AGG - chr7.3:1506643-1506662 None:intergenic 30.0%
ATACACTTATTACACCATCT+CGG - chr7.3:1504825-1504844 None:intergenic 30.0%
ATCTTGAACAAATTTCTGCA+CGG - chr7.3:1505792-1505811 None:intergenic 30.0%
ATTTGTTTCCACAAGCTATT+CGG + chr7.3:1506178-1506197 MS.gene050593:intron 30.0%
CAAACATGCACTTATATCAT+CGG - chr7.3:1504111-1504130 None:intergenic 30.0%
CAAAGTAGAATTAACTCTAG+GGG + chr7.3:1505024-1505043 MS.gene050593:intron 30.0%
CAAGTTAGAATCAATTCTAG+AGG - chr7.3:1504941-1504960 None:intergenic 30.0%
CAATATTAAAGCTCTTCACA+AGG - chr7.3:1505610-1505629 None:intergenic 30.0%
CATTATACCTACACATGTTT+AGG - chr7.3:1505919-1505938 None:intergenic 30.0%
CATTGAAGAGAAATTGAACA+GGG - chr7.3:1504706-1504725 None:intergenic 30.0%
CATTGCAAATTTGCAATACA+TGG - chr7.3:1504669-1504688 None:intergenic 30.0%
CTAAACATGTGTAGGTATAA+TGG + chr7.3:1505917-1505936 MS.gene050593:intron 30.0%
CTGTGTGAAATTCATGTAAT+TGG - chr7.3:1505697-1505716 None:intergenic 30.0%
GAAGTTAGAATCAATTATGG+AGG + chr7.3:1504523-1504542 MS.gene050593:intron 30.0%
GATGAGGAAAATTTCTTAAG+AGG + chr7.3:1506904-1506923 MS.gene050593:CDS 30.0%
GATGATATAAGTGCATGTTT+GGG + chr7.3:1504110-1504129 MS.gene050593:intron 30.0%
GCGGTGATAAAAAATGATAT+AGG + chr7.3:1504134-1504153 MS.gene050593:intron 30.0%
GGTGTACAATGAAATATGAA+TGG - chr7.3:1505398-1505417 None:intergenic 30.0%
GTAACGAAACAAACACTTAT+TGG - chr7.3:1504175-1504194 None:intergenic 30.0%
TAAAGAAGAAATGGAGATAC+TGG + chr7.3:1506933-1506952 MS.gene050593:CDS 30.0%
TCCAACTTGAGGAAAAAAAA+AGG + chr7.3:1506031-1506050 MS.gene050593:intron 30.0%
TTACTAACCTAAACATGTGT+AGG + chr7.3:1505909-1505928 MS.gene050593:intron 30.0%
! AAACCTTATTTGTGTGTGTT+TGG - chr7.3:1505116-1505135 None:intergenic 30.0%
! AGTGAGTTTAGAATCTAAGT+TGG - chr7.3:1504736-1504755 None:intergenic 30.0%
! AGTTCTTAACTCTCTTTTAG+TGG + chr7.3:1504642-1504661 MS.gene050593:intron 30.0%
! ATTTAAAATCAGTGATCTGC+AGG + chr7.3:1506494-1506513 MS.gene050593:intron 30.0%
! CATGATTTTCTGTTACCTTT+AGG + chr7.3:1506403-1506422 MS.gene050593:intron 30.0%
! GAATTGAGTTAGCTTATGTT+TGG - chr7.3:1504621-1504640 None:intergenic 30.0%
! GTGAGTTTAGAATCTAAGTT+GGG - chr7.3:1504735-1504754 None:intergenic 30.0%
! TAAAGTGTTTCAAGAAGATG+AGG + chr7.3:1506888-1506907 MS.gene050593:CDS 30.0%
! TATTTGTTGAAGTCTGTCTT+TGG + chr7.3:1506460-1506479 MS.gene050593:intron 30.0%
! TCTACTTTGAAGGTAGAATT+TGG - chr7.3:1505013-1505032 None:intergenic 30.0%
!! ATGAAGTTGATGTAAAGTAG+AGG - chr7.3:1505368-1505387 None:intergenic 30.0%
!! TTAGTGTATGTTTTGTTCTG+CGG - chr7.3:1504453-1504472 None:intergenic 30.0%
!! TTGTTGGTAATATAACATGG+AGG + chr7.3:1505729-1505748 MS.gene050593:CDS 30.0%
!!! ATCAATTTTGACTGCTACAA+AGG + chr7.3:1504585-1504604 MS.gene050593:intron 30.0%
!!! GTTAGTGCTTAGTTTTTTAG+GGG + chr7.3:1503992-1504011 MS.gene050593:intron 30.0%
!!! TCCTTTTTTTTTCCTCAAGT+TGG - chr7.3:1506035-1506054 None:intergenic 30.0%
AAAAAGAGAGTTTCTGAGCA+AGG - chr7.3:1505883-1505902 None:intergenic 35.0%
ACACATTGTGGAGTTAAAGT+CGG - chr7.3:1504770-1504789 None:intergenic 35.0%
ACCTTAACTATCAAGATGAC+TGG + chr7.3:1505852-1505871 MS.gene050593:CDS 35.0%
ATACCTGAGGAGTTATATGT+AGG - chr7.3:1504057-1504076 None:intergenic 35.0%
ATCAGAACAGATAACACATG+TGG + chr7.3:1506706-1506725 MS.gene050593:CDS 35.0%
ATTTCATGAGCAAAGAGTTC+AGG - chr7.3:1505435-1505454 None:intergenic 35.0%
CAAAATTGATTATGGAGGTG+TGG + chr7.3:1504209-1504228 MS.gene050593:intron 35.0%
CAGAAATGACCTTGTTAGAA+AGG + chr7.3:1506851-1506870 MS.gene050593:CDS 35.0%
CCATTGAAGAGAAATTGAAC+AGG - chr7.3:1504707-1504726 None:intergenic 35.0%
CCCATATGCATACCTTAAAA+CGG + chr7.3:1506330-1506349 MS.gene050593:intron 35.0%
CCTGTTCAATTTCTCTTCAA+TGG + chr7.3:1504704-1504723 MS.gene050593:intron 35.0%
CGATGATATAAGTGCATGTT+TGG + chr7.3:1504109-1504128 MS.gene050593:intron 35.0%
GAACCAAACACACACAAATA+AGG + chr7.3:1505110-1505129 MS.gene050593:intron 35.0%
GTTTCGTTACACTTGTAGAT+GGG + chr7.3:1504185-1504204 MS.gene050593:intron 35.0%
TATTCCTGAACTTGATAGAG+CGG + chr7.3:1506651-1506670 MS.gene050593:CDS 35.0%
TCATGATTATAGAGGATTCC+TGG - chr7.3:1505824-1505843 None:intergenic 35.0%
TGGGTCAAAATTGATTATGG+AGG + chr7.3:1504204-1504223 MS.gene050593:intron 35.0%
TGTAAAGTAGAGGACTAACT+TGG - chr7.3:1505358-1505377 None:intergenic 35.0%
TGTTTCGTTACACTTGTAGA+TGG + chr7.3:1504184-1504203 MS.gene050593:intron 35.0%
TTCATGTAATTGGCAGTCAA+AGG - chr7.3:1505687-1505706 None:intergenic 35.0%
TTTGTTTCCACAAGCTATTC+GGG + chr7.3:1506179-1506198 MS.gene050593:intron 35.0%
! ACCAGTCATCTTGATAGTTA+AGG - chr7.3:1505856-1505875 None:intergenic 35.0%
! CAGACTAAAAAGTGAGTTGA+AGG - chr7.3:1504386-1504405 None:intergenic 35.0%
! CATCTTGGTTACACATTTTG+AGG + chr7.3:1506361-1506380 MS.gene050593:intron 35.0%
! GGAATTGATTCTCAGATGTT+TGG + chr7.3:1504230-1504249 MS.gene050593:intron 35.0%
! TAAATGTCACTTCCAACTTG+AGG + chr7.3:1506020-1506039 MS.gene050593:intron 35.0%
! TAGAATTAACTCTAGGGGTT+AGG + chr7.3:1505029-1505048 MS.gene050593:intron 35.0%
! TTAGTATGTGTATGGTTCTG+AGG - chr7.3:1505181-1505200 None:intergenic 35.0%
!! ACCTTTCAGGTTTAGCTAAA+AGG - chr7.3:1506433-1506452 None:intergenic 35.0%
!! CAAATATAAAGGCACCTTTC+AGG - chr7.3:1506446-1506465 None:intergenic 35.0%
!! CCTTTCAGGTTTAGCTAAAA+GGG - chr7.3:1506432-1506451 None:intergenic 35.0%
!! GTTCAGGTTCTTTTGGTAAT+TGG - chr7.3:1505419-1505438 None:intergenic 35.0%
!! TGCTTGTTGTTCTTGAAGAT+TGG + chr7.3:1503818-1503837 MS.gene050593:CDS 35.0%
!!! ACCGTTTTAAGGTATGCATA+TGG - chr7.3:1506334-1506353 None:intergenic 35.0%
!!! CCGTTTTAAGGTATGCATAT+GGG - chr7.3:1506333-1506352 None:intergenic 35.0%
AAAACGGTTCTCTAGCATCT+TGG + chr7.3:1506346-1506365 MS.gene050593:intron 40.0%
AAACCAATATGGCAGCTACT+TGG - chr7.3:1503861-1503880 None:intergenic 40.0%
AAGCATATGCGAGACTGTTT+GGG - chr7.3:1506269-1506288 None:intergenic 40.0%
AAGGAGAGAAAACCATTGTG+AGG + chr7.3:1506773-1506792 MS.gene050593:CDS 40.0%
AATCCAAGTAGCTGCCATAT+TGG + chr7.3:1503855-1503874 MS.gene050593:CDS 40.0%
AATGACCTTGTTAGAAAGGC+TGG + chr7.3:1506855-1506874 MS.gene050593:CDS 40.0%
AGAATTTCCTGTTCCAAACC+CGG + chr7.3:1505580-1505599 MS.gene050593:CDS 40.0%
AGGAGAGAAAACCATTGTGA+GGG + chr7.3:1506774-1506793 MS.gene050593:CDS 40.0%
AGTTGAAGAGTTAGAAGAGG+AGG + chr7.3:1506798-1506817 MS.gene050593:CDS 40.0%
AGTTTGGAGACAAGCAATGT+TGG - chr7.3:1505306-1505325 None:intergenic 40.0%
ATATAACTCCTCAGGTATCC+TGG + chr7.3:1504059-1504078 MS.gene050593:intron 40.0%
CTAGGTACATATGCTTCATG+TGG - chr7.3:1505959-1505978 None:intergenic 40.0%
CTGAAAACAGCTTATGGACA+TGG + chr7.3:1506220-1506239 MS.gene050593:intron 40.0%
CTGGTCTATTGTTGCAAGTT+TGG - chr7.3:1505322-1505341 None:intergenic 40.0%
CTTGTAAGAAATCCACCATC+TGG - chr7.3:1505764-1505783 None:intergenic 40.0%
CTTGTTTGCTCAAAGAATGC+AGG + chr7.3:1503935-1503954 MS.gene050593:CDS 40.0%
GAACTCGTTCTTACACATTG+TGG - chr7.3:1504782-1504801 None:intergenic 40.0%
GATACTGGACAGTCTCAAAT+TGG + chr7.3:1506948-1506967 MS.gene050593:CDS 40.0%
GCACTTATATCATCGGAGTT+AGG - chr7.3:1504104-1504123 None:intergenic 40.0%
GGAAGTTGAAGAGTTAGAAG+AGG + chr7.3:1506795-1506814 MS.gene050593:CDS 40.0%
GGACGTGTTTGAAAACAAAG+TGG + chr7.3:1505493-1505512 MS.gene050593:CDS 40.0%
GTGCCTAAGAAATCTGATGT+GGG + chr7.3:1505557-1505576 MS.gene050593:CDS 40.0%
GTTCAAGATCCTTCATATCC+AGG + chr7.3:1505803-1505822 MS.gene050593:CDS 40.0%
TAAGCATATGCGAGACTGTT+TGG - chr7.3:1506270-1506289 None:intergenic 40.0%
TAGAGGATTCCTGGATATGA+AGG - chr7.3:1505815-1505834 None:intergenic 40.0%
TAGCTAAAAGGGTTGCCTAA+AGG - chr7.3:1506421-1506440 None:intergenic 40.0%
TATAAGTGCATGTTTGGGTG+CGG + chr7.3:1504115-1504134 MS.gene050593:intron 40.0%
TCTCCCACATCAGATTTCTT+AGG - chr7.3:1505563-1505582 None:intergenic 40.0%
TGTATGTTCGATTCCACCTT+TGG + chr7.3:1504840-1504859 MS.gene050593:intron 40.0%
TGTGCCTAAGAAATCTGATG+TGG + chr7.3:1505556-1505575 MS.gene050593:CDS 40.0%
! ATCAATTTTGCCTCCTCCAA+AGG - chr7.3:1504859-1504878 None:intergenic 40.0%
! GATGCTAGAGAACCGTTTTA+AGG - chr7.3:1506345-1506364 None:intergenic 40.0%
!! CAGATGGTGGATTTCTTACA+AGG + chr7.3:1505762-1505781 MS.gene050593:CDS 40.0%
!! CCCTTTTAGCTAAACCTGAA+AGG + chr7.3:1506429-1506448 MS.gene050593:intron 40.0%
!! CTTCCATTTTTACGTACGCA+GGG + chr7.3:1505241-1505260 MS.gene050593:intron 40.0%
!! GCAAAGAGTTCAGGTTCTTT+TGG - chr7.3:1505426-1505445 None:intergenic 40.0%
!! TTGCAGATTTTAGTGGCAAG+TGG + chr7.3:1505627-1505646 MS.gene050593:CDS 40.0%
!!! AGTGCTTAGTTTTTTAGGGG+AGG + chr7.3:1503995-1504014 MS.gene050593:intron 40.0%
AAGCTATTCGGGAGAGCTTA+TGG + chr7.3:1506190-1506209 MS.gene050593:intron 45.0%
AAGCTCTTCACAAGGACATC+CGG - chr7.3:1505602-1505621 None:intergenic 45.0%
AAGGCTGGAGAAAAAGGTAG+AGG + chr7.3:1506750-1506769 MS.gene050593:CDS 45.0%
ACAAGAACATGCATCCGAGA+TGG + chr7.3:1504808-1504827 MS.gene050593:intron 45.0%
ACTTGGCATTCAGTCTCATC+TGG - chr7.3:1505341-1505360 None:intergenic 45.0%
ATGTTCGATTCCACCTTTGG+AGG + chr7.3:1504843-1504862 MS.gene050593:intron 45.0%
CAATGTTGGCAGCACATGAT+GGG - chr7.3:1505292-1505311 None:intergenic 45.0%
CAGTCTCAAATTGGAAGCTG+AGG + chr7.3:1506957-1506976 MS.gene050593:CDS 45.0%
CCTGCGTACGTAAAAATGGA+AGG - chr7.3:1505243-1505262 None:intergenic 45.0%
CTACCCTGCGTACGTAAAAA+TGG - chr7.3:1505247-1505266 None:intergenic 45.0%
CTCTTCAACTTCCCTCACAA+TGG - chr7.3:1506788-1506807 None:intergenic 45.0%
CTGGAGAAAAAGGTAGAGGA+AGG + chr7.3:1506754-1506773 MS.gene050593:CDS 45.0%
GAGGAAGTAGAAGAGCTCTT+TGG + chr7.3:1506976-1506995 MS.gene050593:CDS 45.0%
GCACCTACATATAACTCCTC+AGG + chr7.3:1504051-1504070 MS.gene050593:intron 45.0%
GGAGGCAAAATTGATCTCAG+AGG + chr7.3:1504864-1504883 MS.gene050593:intron 45.0%
GTCTGTCTTTGGCCATATAG+AGG + chr7.3:1506471-1506490 MS.gene050593:intron 45.0%
TCTTAGTTTCCTTAGCGGCA+AGG - chr7.3:1507007-1507026 None:intergenic 45.0%
TGAAGAGTTAGAAGAGGAGG+TGG + chr7.3:1506801-1506820 MS.gene050593:CDS 45.0%
TGCACTCCTTGTGTACACAA+CGG - chr7.3:1506614-1506633 None:intergenic 45.0%
TGTGGAAAGGCTGGAGAAAA+AGG + chr7.3:1506744-1506763 MS.gene050593:CDS 45.0%
TGTTAGAAAGGCTGGCAGAA+GGG + chr7.3:1506863-1506882 MS.gene050593:CDS 45.0%
TTACGTACGCAGGGTAGAAT+TGG + chr7.3:1505250-1505269 MS.gene050593:intron 45.0%
TTCTGCCAGCCTTTCTAACA+AGG - chr7.3:1506863-1506882 None:intergenic 45.0%
TTGTTAGAAAGGCTGGCAGA+AGG + chr7.3:1506862-1506881 MS.gene050593:CDS 45.0%
TTTCTCCAGCCTTTCCACAA+TGG - chr7.3:1506743-1506762 None:intergenic 45.0%
TTTGCCGCTCTATCAAGTTC+AGG - chr7.3:1506658-1506677 None:intergenic 45.0%
! AATTTTGCCTCCTCCAAAGG+TGG - chr7.3:1504856-1504875 None:intergenic 45.0%
! AGAAATCCACCATCTGGAGT+TGG - chr7.3:1505758-1505777 None:intergenic 45.0%
! GGTATGCATATGGGCTTGTT+TGG - chr7.3:1506324-1506343 None:intergenic 45.0%
!! CAGTCAAAGGCATCGAATGT+AGG - chr7.3:1505674-1505693 None:intergenic 45.0%
!! CCTTCCATTTTTACGTACGC+AGG + chr7.3:1505240-1505259 MS.gene050593:intron 45.0%
!!! GCTTAGTTTTTTAGGGGAGG+AGG + chr7.3:1503998-1504017 MS.gene050593:intron 45.0%
!! CATAATAAAAATAATATAAT+AGG + chr7.3:1505217-1505236 MS.gene050593:intron 5.0%
!!! CTATTATATTATTTTTATTA+TGG - chr7.3:1505219-1505238 None:intergenic 5.0%
AAGCTCTCCCGAATAGCTTG+TGG - chr7.3:1506189-1506208 None:intergenic 50.0%
AGCTCTTCACAAGGACATCC+GGG - chr7.3:1505601-1505620 None:intergenic 50.0%
AGGATACCAACTCCAGATGG+TGG + chr7.3:1505749-1505768 MS.gene050593:CDS 50.0%
CAGAGCCTTCCATTGTGGAA+AGG + chr7.3:1506731-1506750 MS.gene050593:CDS 50.0%
CTTTCCACAATGGAAGGCTC+TGG - chr7.3:1506733-1506752 None:intergenic 50.0%
GAGAAGGAGGTAGAGAAGGT+TGG + chr7.3:1506823-1506842 MS.gene050593:CDS 50.0%
GCAATGTTGGCAGCACATGA+TGG - chr7.3:1505293-1505312 None:intergenic 50.0%
GCATCAACAGCATCAGCTGA+TGG - chr7.3:1503901-1503920 None:intergenic 50.0%
GGCAAGTGGTTCATCACTAG+TGG + chr7.3:1505641-1505660 MS.gene050593:CDS 50.0%
GTTAGAAGAGGAGGTGGAGA+AGG + chr7.3:1506807-1506826 MS.gene050593:CDS 50.0%
TCAATGAGTGCGCTGTATCG+AGG + chr7.3:1505525-1505544 MS.gene050593:CDS 50.0%
TCCAGCCTTTCCACAATGGA+AGG - chr7.3:1506739-1506758 None:intergenic 50.0%
TGACTGCTACAAAGGACACG+AGG + chr7.3:1504593-1504612 MS.gene050593:intron 50.0%
TGGAGGATACCAACTCCAGA+TGG + chr7.3:1505746-1505765 MS.gene050593:CDS 50.0%
TTCACAAGGACATCCGGGTT+TGG - chr7.3:1505596-1505615 None:intergenic 50.0%
! GATAGAGCGGCAAAGAGTGT+AGG + chr7.3:1506664-1506683 MS.gene050593:CDS 50.0%
! TTCGATTCCACCTTTGGAGG+AGG + chr7.3:1504846-1504865 MS.gene050593:intron 50.0%
AACGATGCCTGGGATGGCTA+TGG + chr7.3:1506583-1506602 MS.gene050593:CDS 55.0%
AGAAGAGGAGGTGGAGAAGG+AGG + chr7.3:1506810-1506829 MS.gene050593:CDS 55.0%
CGGAGTTAGGAGTCGCTCAA+CGG - chr7.3:1504091-1504110 None:intergenic 55.0%
GCCTTCCATTGTGGAAAGGC+TGG + chr7.3:1506735-1506754 MS.gene050593:CDS 55.0%
GGTGGAGAAGGAGGTAGAGA+AGG + chr7.3:1506819-1506838 MS.gene050593:CDS 55.0%
TGGACCAGAGCCTTCCATTG+TGG + chr7.3:1506726-1506745 MS.gene050593:CDS 55.0%
! AGGACATCCGGGTTTGGAAC+AGG - chr7.3:1505590-1505609 None:intergenic 55.0%
!! GTGGTGCCGTTGTGTACACA+AGG + chr7.3:1506605-1506624 MS.gene050593:CDS 55.0%
ACCGAGGCAGAAACGATGCC+TGG + chr7.3:1506572-1506591 MS.gene050593:CDS 60.0%
CCGAGGCAGAAACGATGCCT+GGG + chr7.3:1506573-1506592 MS.gene050593:CDS 60.0%
GATGCCTGGGATGGCTATGG+TGG + chr7.3:1506586-1506605 MS.gene050593:CDS 60.0%
GGCAGAAACGATGCCTGGGA+TGG + chr7.3:1506577-1506596 MS.gene050593:CDS 60.0%
TAGGAGTCGCTCAACGGCAC+AGG - chr7.3:1504085-1504104 None:intergenic 60.0%
TTGGACGTGCCTTGCCGCTA+AGG + chr7.3:1506995-1507014 MS.gene050593:CDS 60.0%
! CCCAGGCATCGTTTCTGCCT+CGG - chr7.3:1506576-1506595 None:intergenic 60.0%
GGCACAGGCCAGGATACCTG+AGG - chr7.3:1504070-1504089 None:intergenic 65.0%
GGCACCACCATAGCCATCCC+AGG - chr7.3:1506593-1506612 None:intergenic 65.0%
GTCGCTCAACGGCACAGGCC+AGG - chr7.3:1504080-1504099 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 1503817 1507029 1503817 ID=MS.gene050593
chr7.3 mRNA 1503817 1507029 1503817 ID=MS.gene050593.t1;Parent=MS.gene050593
chr7.3 exon 1503817 1503956 1503817 ID=MS.gene050593.t1.exon1;Parent=MS.gene050593.t1
chr7.3 CDS 1503817 1503956 1503817 ID=cds.MS.gene050593.t1;Parent=MS.gene050593.t1
chr7.3 exon 1505262 1505358 1505262 ID=MS.gene050593.t1.exon2;Parent=MS.gene050593.t1
chr7.3 CDS 1505262 1505358 1505262 ID=cds.MS.gene050593.t1;Parent=MS.gene050593.t1
chr7.3 exon 1505482 1505873 1505482 ID=MS.gene050593.t1.exon3;Parent=MS.gene050593.t1
chr7.3 CDS 1505482 1505873 1505482 ID=cds.MS.gene050593.t1;Parent=MS.gene050593.t1
chr7.3 exon 1506516 1507029 1506516 ID=MS.gene050593.t1.exon4;Parent=MS.gene050593.t1
chr7.3 CDS 1506516 1507029 1506516 ID=cds.MS.gene050593.t1;Parent=MS.gene050593.t1
Gene Sequence

>MS.gene050593

ATGCTTGTTGTTCTTGAAGATTGGAGAAATTCACGCATAATCCAAGTAGCTGCCATATTGGTTTCCATTTTAATGATTGTTCCATCAGCTGATGCTGTTGATGCACTCAAAACTTGTGCTTGTTTGCTCAAAGAATGCAGGTATGCTGCTATACCTGTTTTTTTTATTGCCAAATGTTAGTGCTTAGTTTTTTAGGGGAGGAGGAAATGTTAGTATCAGAGATTGAACTCTATAGCACCTACATATAACTCCTCAGGTATCCTGGCCTGTGCCGTTGAGCGACTCCTAACTCCGATGATATAAGTGCATGTTTGGGTGCGGTGATAAAAAATGATATAGGATGAACTGAATTGATCCAATAAGTGTTTGTTTCGTTACACTTGTAGATGGGTCAAAATTGATTATGGAGGTGTGGAATTGATTCTCAGATGTTTGGTTGCTTTCGAGTAGAATTGATTCGATTTGAAGTTAGAATTTGTAGCTTTTGATTCTAGAGTTGATTTTTACACATAAATTTATAGTTCAATTCACTTTAACATGAATGATGCCAAACATAAATCATTTTACCTTCAACTCACTTTTTAGTCTGAACCAATTATACATAATCAATTCACTAACAATCAATTTTTGTCACCGCAGAACAAAACATACACTAAATTTCAATGTAAAAAACACGTTTAGATTCAAAAGCTACAAATTTTAGCTTGAAGTTAGAATCAATTATGGAGGCAAAATCAATTTTACTCAAGAGCAACCAAACATGTCAAAATCAATTTTGACTGCTACAAAGGACACGAGGAACCAAACATAAGCTAACTCAATTCGAGTTCTTAACTCTCTTTTAGTGGACCATGTATTGCAAATTTGCAATGTATTATTTAAGAAACCCTGTTCAATTTCTCTTCAATGGTAGAACCCAACTTAGATTCTAAACTCACTTTCAATGATTTCCGACTTTAACTCCACAATGTGTAAGAACGAGTTCATACACACAAGAACATGCATCCGAGATGGTGTAATAAGTGTATGTTCGATTCCACCTTTGGAGGAGGCAAAATTGATCTCAGAGGTGTGAAATTGATTTTAATTTGTTTGGATGTTCTCGAATAAATTTGATGTAACCTCTAGAATTGATTCTAACTTGAAGTTAGGAATTTGAGCATTTGTCTCTGCAATTGATTTTTAGCAAAACTCCAAATTCTACCTTCAAAGTAGAATTAACTCTAGGGGTTAGGTTAAATCATTTTTACTTGAGAACCTTCAAACATATCAAAATCAATTCTACGACTCTACGAACCAAACACACACAAATAAGGTTTAGATTCAACTACTTTTAGTCACTGCAGAGTTAATTTTTGTCGCCTCAGAACCATACACATACTAATACATTAGCTCAAAACCATAATAAAAATAATATAATAGGCCTTCCATTTTTACGTACGCAGGGTAGAATTGGCTAAGTGTCTTGCAAACCCATCATGTGCTGCCAACATTGCTTGTCTCCAAACTTGCAACAATAGACCAGATGAGACTGAATGCCAAGTTAGTCCTCTACTTTACATCAACTTCATGCCTTTACCATTCATATTTCATTGTACACCAATTACCAAAAGAACCTGAACTCTTTGCTCATGAAATCTTCTTTTTTTAATCGTAATTTTATAGATCAAATGTGGGGACGTGTTTGAAAACAAAGTGGTTGATGAATTCAATGAGTGCGCTGTATCGAGGAAGAAATGTGTGCCTAAGAAATCTGATGTGGGAGAATTTCCTGTTCCAAACCCGGATGTCCTTGTGAAGAGCTTTAATATTGCAGATTTTAGTGGCAAGTGGTTCATCACTAGTGGCTTAAATCCTACATTCGATGCCTTTGACTGCCAATTACATGAATTTCACACAGAATCAAATAAACTTGTTGGTAATATAACATGGAGGATACCAACTCCAGATGGTGGATTTCTTACAAGGTCAGCCGTGCAGAAATTTGTTCAAGATCCTTCATATCCAGGAATCCTCTATAATCATGATAATGAGTACCTTAACTATCAAGATGACTGGTAATTCCTTGCTCAGAAACTCTCTTTTTCATTTTTTACTAACCTAAACATGTGTAGGTATAATGGCAATTATATGATATATCCACATGAAGCATATGTACCTAGCATTTTGCTATTCAAAATGGAACTCTATTGCTTGAAGCAAGTAAATGTCACTTCCAACTTGAGGAAAAAAAAAGGACATGACAGTTGACAACATGTTTTTTTCAGCATCTTTTAAGCACTTATAGCGTAATCGTTTATGTATAACCTATTTCTATAATAAAAGATAAAATAAAGTCAAATTGTTTTAATATAAGCTATAATTTGTTTCCACAAGCTATTCGGGAGAGCTTATGGAAATAAGCTGAAAACAGCTTATGGACATGGCATAAGTTGTTTCTATAAGCTCTCCCAAACAGTCTCGCATATGCTTAAATCAGTAAATAAGCTCAAATAAGTCTTAATCCAAACAAGCCCATATGCATACCTTAAAACGGTTCTCTAGCATCTTGGTTACACATTTTGAGGTTTCCAGTGTATGAGAATTCATGATTTTCTGTTACCTTTAGGCAACCCTTTTAGCTAAACCTGAAAGGTGCCTTTATATTTGTTGAAGTCTGTCTTTGGCCATATAGAGGATTTAAAATCAGTGATCTGCAGGTATGTCGTGTCATCTCAAATCGAGAATAAACCAGATGATTATATATTTATATACTACCGAGGCAGAAACGATGCCTGGGATGGCTATGGTGGTGCCGTTGTGTACACAAGGAGTGCAGTTTTACCTGAATCTATTATTCCTGAACTTGATAGAGCGGCAAAGAGTGTAGGAAGAGACTTTAGCAAGTTCATCAGAACAGATAACACATGTGGACCAGAGCCTTCCATTGTGGAAAGGCTGGAGAAAAAGGTAGAGGAAGGAGAGAAAACCATTGTGAGGGAAGTTGAAGAGTTAGAAGAGGAGGTGGAGAAGGAGGTAGAGAAGGTTGGTAAAACAGAAATGACCTTGTTAGAAAGGCTGGCAGAAGGGTTTAAAGTGTTTCAAGAAGATGAGGAAAATTTCTTAAGAGGGTTATCTAAAGAAGAAATGGAGATACTGGACAGTCTCAAATTGGAAGCTGAGGAAGTAGAAGAGCTCTTTGGACGTGCCTTGCCGCTAAGGAAACTAAGATAA

Protein sequence

>MS.gene050593.t1

MLVVLEDWRNSRIIQVAAILVSILMIVPSADAVDALKTCACLLKECRVELAKCLANPSCAANIACLQTCNNRPDETECQIKCGDVFENKVVDEFNECAVSRKKCVPKKSDVGEFPVPNPDVLVKSFNIADFSGKWFITSGLNPTFDAFDCQLHEFHTESNKLVGNITWRIPTPDGGFLTRSAVQKFVQDPSYPGILYNHDNEYLNYQDDWYVVSSQIENKPDDYIFIYYRGRNDAWDGYGGAVVYTRSAVLPESIIPELDRAAKSVGRDFSKFIRTDNTCGPEPSIVERLEKKVEEGEKTIVREVEELEEEVEKEVEKVGKTEMTLLERLAEGFKVFQEDEENFLRGLSKEEMEILDSLKLEAEEVEELFGRALPLRKLR