AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052346


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052346.t1 MTR_4g077070 97.045 440 13 0 20 459 95 534 0.0 902
MS.gene052346.t1 MTR_7g096120 52.434 452 194 11 1 442 55 495 3.44e-167 480
MS.gene052346.t1 MTR_7g096140 52.530 415 177 10 1 406 55 458 1.63e-154 446
MS.gene052346.t1 MTR_2g015690 43.659 410 194 8 24 420 19 404 1.06e-107 325
MS.gene052346.t1 MTR_4g087830 40.758 422 209 10 24 435 3 393 1.29e-99 304
MS.gene052346.t1 MTR_4g087810 39.192 421 217 9 24 435 12 402 7.34e-97 297
MS.gene052346.t1 MTR_7g006400 45.143 350 161 10 25 366 105 431 5.00e-94 293
MS.gene052346.t1 MTR_4g080100 36.111 432 215 9 27 425 30 433 4.46e-87 273
MS.gene052346.t1 MTR_5g013230 38.601 386 201 7 18 385 128 495 8.36e-84 268
MS.gene052346.t1 MTR_7g081620 38.903 401 195 9 21 386 65 450 1.64e-81 259
MS.gene052346.t1 MTR_7g081645 39.678 373 184 9 24 382 74 419 8.29e-81 256
MS.gene052346.t1 MTR_4g099510 40.476 378 196 8 18 385 122 480 7.77e-78 251
MS.gene052346.t1 MTR_1995s0010 51.754 228 98 6 147 367 1 223 1.00e-76 239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052346.t1 AT1G51440 70.370 432 115 5 23 443 85 514 0.0 647
MS.gene052346.t1 AT1G06800 56.726 446 176 9 4 439 66 504 1.43e-179 512
MS.gene052346.t1 AT2G30550 56.208 443 178 7 7 440 86 521 1.60e-178 510
MS.gene052346.t1 AT1G06800 56.952 374 146 7 4 368 66 433 1.76e-149 433
MS.gene052346.t1 AT2G30550 56.417 374 148 6 4 369 83 449 3.80e-149 433
MS.gene052346.t1 AT1G30370 43.750 432 210 9 20 439 109 519 2.49e-122 367
MS.gene052346.t1 AT1G05800 47.309 353 158 9 23 367 78 410 1.42e-98 304
MS.gene052346.t1 AT2G31690 45.763 354 165 11 23 367 86 421 4.69e-95 295
MS.gene052346.t1 AT1G06250 39.753 405 208 7 29 420 9 390 1.12e-93 290
MS.gene052346.t1 AT4G18550 40.394 406 204 10 29 420 23 404 7.39e-93 287
MS.gene052346.t1 AT4G18550 40.394 406 204 10 29 420 40 421 1.05e-92 288
MS.gene052346.t1 AT2G42690 36.659 431 216 9 29 429 8 411 6.18e-87 272
MS.gene052346.t1 AT2G44810 40.260 385 180 11 23 382 84 443 2.79e-84 266
MS.gene052346.t1 AT2G44810 40.584 377 174 11 31 382 2 353 6.34e-84 262
MS.gene052346.t1 AT4G16820 40.513 390 186 10 14 384 116 478 2.41e-80 258
MS.gene052346.t1 AT4G18550 42.105 266 139 7 29 283 40 301 1.39e-63 208
MS.gene052346.t1 AT1G06250 40.134 299 148 5 130 420 1 276 3.93e-63 207
MS.gene052346.t1 AT5G18630 30.818 159 88 5 150 306 100 238 3.24e-11 64.3
MS.gene052346.t1 AT5G18640 30.818 159 88 5 150 306 100 238 3.90e-11 64.3
MS.gene052346.t1 AT5G18630 30.818 159 88 5 150 306 100 238 4.34e-11 64.7
MS.gene052346.t1 AT5G18630 30.818 159 88 5 150 306 101 239 4.57e-11 64.7
MS.gene052346.t1 AT5G18640 30.818 159 88 5 150 306 100 238 6.69e-11 64.3
MS.gene052346.t1 AT5G18640 30.818 159 88 5 150 306 100 238 6.69e-11 64.3
MS.gene052346.t1 AT5G18640 30.818 159 88 5 150 306 112 250 9.04e-11 63.9
MS.gene052346.t1 AT5G18640 30.818 159 88 5 150 306 112 250 9.04e-11 63.9

Find 110 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGAACTGAAATTAAAT+TGG 0.207992 4.4:+33503328 MS.gene052346:CDS
AATTTAATATGGTTTCAAAA+AGG 0.225064 4.4:+33503456 MS.gene052346:CDS
TTAGATTTCTTGAAGAATTT+AGG 0.245553 4.4:-33500818 None:intergenic
TTTGAAGGAAAATGGTGATT+TGG 0.252255 4.4:+33503370 MS.gene052346:CDS
CCTGTTTCTACTTTGATTGA+TGG 0.275271 4.4:-33502870 None:intergenic
TTGAAGGAAAATGGTGATTT+GGG 0.292625 4.4:+33503371 MS.gene052346:CDS
GCTTACGACATAGCCGAATT+AGG 0.294321 4.4:+33503062 MS.gene052346:CDS
AAATCCAAGGCGAGAACAAC+TGG 0.302827 4.4:+33500579 MS.gene052346:CDS
AGTGCAGGATTGTTCTTTCT+TGG 0.310372 4.4:-33502910 None:intergenic
TGGAGACAAGATGAGAATAA+AGG 0.322904 4.4:+33503542 MS.gene052346:CDS
TGCATAGAGGTAGCGGCTTA+TGG 0.364333 4.4:-33500777 None:intergenic
GATGATGTTCACTCCTAATT+CGG 0.369822 4.4:-33503075 None:intergenic
CTTCCCAGTTGTTCTCGCCT+TGG 0.372841 4.4:-33500583 None:intergenic
GGCTTTCGTTGAGCGATGTA+TGG 0.379405 4.4:+33500552 MS.gene052346:CDS
CGCGAACGAGTAAACCGTTA+TGG 0.379883 4.4:-33503126 None:intergenic
CGTTCGCGGGGCCGAGAGTT+GGG 0.383970 4.4:+33503141 MS.gene052346:CDS
CAAATCACGTGGTCCTTGAT+TGG 0.386663 4.4:-33503694 None:intergenic
ATAAGAGTTGTGATCTTCTA+AGG 0.392001 4.4:+33503495 MS.gene052346:CDS
TGTGGAGCCCTTATGCTAAC+TGG 0.405947 4.4:+33500852 MS.gene052346:CDS
TTGAAACTGAAATTTCTCAT+TGG 0.419763 4.4:-33503261 None:intergenic
TCGTTCGCGGGGCCGAGAGT+TGG 0.421350 4.4:+33503140 MS.gene052346:CDS
GGAATTTGCACTTTAAAGAA+AGG 0.421543 4.4:+33503162 MS.gene052346:CDS
GCAAGATGATGTGCAATATC+TGG 0.423197 4.4:-33503629 None:intergenic
CATCTTCCTCTTCGTGCAGT+TGG 0.426552 4.4:-33500493 None:intergenic
TTCTCATTGGTTATAATCCC+CGG 0.428050 4.4:-33503248 None:intergenic
GGAGACAAGATGAGAATAAA+GGG 0.429109 4.4:+33503543 MS.gene052346:CDS
GACAAGGTTCCAACCGTGCC+GGG 0.432120 4.4:+33503230 MS.gene052346:CDS
GCTTCCACTAGAGGCCGTTC+AGG 0.434299 4.4:-33503599 None:intergenic
GAAGAAGAGATTAAACGTTT+AGG 0.434314 4.4:+33500902 MS.gene052346:CDS
TGATGCTGATTTCTTCATCT+TGG 0.436804 4.4:-33502995 None:intergenic
CCTTGGAGTTATGCTCATGT+TGG 0.439341 4.4:+33503311 MS.gene052346:CDS
CCATCAATCAAAGTAGAAAC+AGG 0.440706 4.4:+33502870 MS.gene052346:CDS
CTGTTTCTACTTTGATTGAT+GGG 0.442102 4.4:-33502869 None:intergenic
TATCCCATCCAGTTAGCATA+AGG 0.442825 4.4:-33500860 None:intergenic
TTTAATCTCTTCTTCGTTGG+TGG 0.443070 4.4:-33500894 None:intergenic
GATCTTCTAAGGAGTGAGTT+TGG 0.443725 4.4:+33503506 MS.gene052346:CDS
GCGAACGAGTAAACCGTTAT+GGG 0.455006 4.4:-33503125 None:intergenic
GTTATAATCCCCGGCACGGT+TGG 0.455037 4.4:-33503239 None:intergenic
ATAACGGTTTACTCGTTCGC+GGG 0.455590 4.4:+33503128 MS.gene052346:CDS
AATGATTTCTTTGCGTAGGA+TGG 0.460085 4.4:-33500627 None:intergenic
CGTTTAGGACGCCGTGACAT+AGG 0.461230 4.4:+33500917 MS.gene052346:CDS
CATTTGATGGATGGGTATCA+TGG 0.469639 4.4:+33503422 MS.gene052346:CDS
AAAGAAAGGTGTGAAGAACT+TGG 0.475583 4.4:+33503176 MS.gene052346:CDS
GGGGTGTACACATAATTTAG+AGG 0.480604 4.4:+33503391 MS.gene052346:CDS
TATGTCGTAAGCGCTGAGTA+TGG 0.482762 4.4:-33503051 None:intergenic
CTCTTTATATAGTGATTGCA+TGG 0.493736 4.4:+33502772 MS.gene052346:intron
TTATATAGTGATTGCATGGA+GGG 0.497247 4.4:+33502776 MS.gene052346:intron
GGGATGGTTCAAACCGATGA+TGG 0.497989 4.4:+33503563 MS.gene052346:CDS
TTGCGTAGGATGGGATCCAT+TGG 0.500240 4.4:-33500617 None:intergenic
ACGTTTAATCTCTTCTTCGT+TGG 0.501727 4.4:-33500897 None:intergenic
CACAACCCACCTTCCATCAT+CGG 0.503475 4.4:-33503576 None:intergenic
GAGAAACTTTACATGGGAGA+TGG 0.511262 4.4:+33500749 MS.gene052346:CDS
ATGATTTCTTTGCGTAGGAT+GGG 0.512394 4.4:-33500626 None:intergenic
GATCAAAACTCAAAATATTG+TGG 0.513294 4.4:+33500695 MS.gene052346:CDS
TGACAAGGTTCCAACCGTGC+CGG 0.514175 4.4:+33503229 MS.gene052346:CDS
TTTCTTTGAGAAACTTTACA+TGG 0.516670 4.4:+33500742 MS.gene052346:CDS
GCATTGGTAGCTTCCAATCA+AGG 0.520891 4.4:+33503681 MS.gene052346:CDS
TGTGCCTGAACGGCCTCTAG+TGG 0.525389 4.4:+33503595 MS.gene052346:CDS
AAGTGCAAATTCCCAACTCT+CGG 0.525702 4.4:-33503152 None:intergenic
TGAGAATGAACAATAAGTGC+AGG 0.528179 4.4:-33502925 None:intergenic
GCACCGTGACATACATAGAA+TGG 0.533607 4.4:+33502799 MS.gene052346:CDS
GGAAGGTCTATTAGATCCAA+TGG 0.534597 4.4:+33500601 MS.gene052346:CDS
ATCCCATCCAGTTAGCATAA+GGG 0.536253 4.4:-33500859 None:intergenic
GAGCCCTTATGCTAACTGGA+TGG 0.539926 4.4:+33500856 MS.gene052346:CDS
CGTAAGCGCTGAGTATGGCT+AGG 0.545238 4.4:-33503046 None:intergenic
CGCAAAGAAATCATTCGCTA+TGG 0.545659 4.4:+33500635 MS.gene052346:CDS
AGTTTCTCAAAGAAATGTGC+AGG 0.546930 4.4:-33500734 None:intergenic
AAAGTATATAGAAGATACAT+TGG 0.550653 4.4:+33503283 MS.gene052346:CDS
TTGATGTTGCATAGAGGTAG+CGG 0.552703 4.4:-33500784 None:intergenic
ATTTCTTGAAGAATTTAGGA+AGG 0.554007 4.4:-33500814 None:intergenic
GAAATCAGCATCACAGTCAC+AGG 0.555372 4.4:+33503005 MS.gene052346:CDS
ACAGTCACAGGACACAGTCT+TGG 0.567549 4.4:+33503017 MS.gene052346:CDS
AACAACTAACGTCCCCATAA+CGG 0.568948 4.4:+33503112 MS.gene052346:CDS
TTCTCATCTTGTCTCCAATG+TGG 0.570582 4.4:-33503536 None:intergenic
AGTTTGGTGTTCCACCACAT+TGG 0.571065 4.4:+33503522 MS.gene052346:CDS
AATCGCATTCAAAATCGCAT+TGG 0.579406 4.4:+33503665 MS.gene052346:CDS
CATAACGGTTTACTCGTTCG+CGG 0.581601 4.4:+33503127 MS.gene052346:CDS
GAAGGTGGGTTGTGCCTGAA+CGG 0.583884 4.4:+33503585 MS.gene052346:CDS
AGCCCTTATGCTAACTGGAT+GGG 0.586402 4.4:+33500857 MS.gene052346:CDS
TCATCTTGTCTCCAATGTGG+TGG 0.589893 4.4:-33503533 None:intergenic
GGTGGATGAGCTTCCACTAG+AGG 0.592564 4.4:-33503608 None:intergenic
TGGTTCAAACCGATGATGGA+AGG 0.596118 4.4:+33503567 MS.gene052346:CDS
TTCAAACCGATGATGGAAGG+TGG 0.599261 4.4:+33503570 MS.gene052346:CDS
ATTGGTTATAATCCCCGGCA+CGG 0.605638 4.4:-33503243 None:intergenic
TATATAGTGATTGCATGGAG+GGG 0.612515 4.4:+33502777 MS.gene052346:intron
TATCCATTCTATGTATGTCA+CGG 0.618336 4.4:-33502802 None:intergenic
ACAAGGTTCCAACCGTGCCG+GGG 0.622173 4.4:+33503231 MS.gene052346:CDS
AGCGAATGATTTCTTTGCGT+AGG 0.624602 4.4:-33500631 None:intergenic
TTTATATAGTGATTGCATGG+AGG 0.625462 4.4:+33502775 MS.gene052346:intron
TATGAACCAACTGCACGAAG+AGG 0.628820 4.4:+33500487 None:intergenic
ATTTGATGGATGGGTATCAT+GGG 0.630818 4.4:+33503423 MS.gene052346:CDS
TAACGGTTTACTCGTTCGCG+GGG 0.632196 4.4:+33503129 MS.gene052346:CDS
ACAAGATGAGAATAAAGGGA+TGG 0.636684 4.4:+33503547 MS.gene052346:CDS
GTAAGCGCTGAGTATGGCTA+GGG 0.639224 4.4:-33503045 None:intergenic
AATCCAAGGCGAGAACAACT+GGG 0.639358 4.4:+33500580 MS.gene052346:CDS
TTCTTTGAGAAACTTTACAT+GGG 0.642102 4.4:+33500743 MS.gene052346:CDS
GGAGTGAACATCATCGAAGA+CGG 0.642474 4.4:+33503083 MS.gene052346:CDS
TGATGTTTGATGTTGCATAG+AGG 0.642978 4.4:-33500790 None:intergenic
CAAGGCGAGAACAACTGGGA+AGG 0.645261 4.4:+33500584 MS.gene052346:CDS
CGAACGAGTAAACCGTTATG+GGG 0.657882 4.4:-33503124 None:intergenic
CCAACATGAGCATAACTCCA+AGG 0.660120 4.4:-33503311 None:intergenic
TAGGGTACATACCTATGTCA+CGG 0.660260 4.4:-33500928 None:intergenic
TGAAGGAAAATGGTGATTTG+GGG 0.667189 4.4:+33503372 MS.gene052346:CDS
AATCTAAGATCTCTTCAGTG+TGG 0.668543 4.4:+33500834 MS.gene052346:CDS
GATGTATGGAGAGAAATCCA+AGG 0.668805 4.4:+33500566 MS.gene052346:CDS
TCAAACCGATGATGGAAGGT+GGG 0.670175 4.4:+33503571 MS.gene052346:CDS
ACATCGCTCAACGAAAGCCG+TGG 0.676341 4.4:-33500548 None:intergenic
AGATGATGTGCAATATCTGG+TGG 0.691855 4.4:-33503626 None:intergenic
AATACATAATATTCATGACA+AGG 0.698783 4.4:+33503214 MS.gene052346:CDS
AAGAAGAAGAAGAATCACCA+CGG 0.725260 4.4:+33500531 MS.gene052346:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATAATAATAAAA+AGG - chr4.4:33502684-33502703 None:intergenic 0.0%
!! AATAAAAAATAAAAATAAAA+AGG + chr4.4:33501700-33501719 MS.gene052346:intron 0.0%
!! GAAAGATAAAAAATTTAATA+TGG + chr4.4:33503445-33503464 MS.gene052346:CDS 10.0%
!!! ATGTTTTTAAAAGAAATAAT+TGG + chr4.4:33502456-33502475 MS.gene052346:intron 10.0%
!!! TTATTACTTTTGATTTTTTA+GGG - chr4.4:33501629-33501648 None:intergenic 10.0%
!!! TTTATTACTTTTGATTTTTT+AGG - chr4.4:33501630-33501649 None:intergenic 10.0%
!! AAATTTCTTCAAAAAAGTAA+AGG + chr4.4:33502646-33502665 MS.gene052346:intron 15.0%
!! AATTTAATATGGTTTCAAAA+AGG + chr4.4:33503456-33503475 MS.gene052346:CDS 15.0%
!! ACTAAAAAAAGAAAAAAGAA+AGG + chr4.4:33502333-33502352 MS.gene052346:intron 15.0%
!! ATGAAGGTAAAAAAAAAAAA+AGG - chr4.4:33501837-33501856 None:intergenic 15.0%
!! ATTTAATATGGTTTCAAAAA+GGG + chr4.4:33503457-33503476 MS.gene052346:CDS 15.0%
!! ATTTCAATTATATATTGAGA+TGG - chr4.4:33502395-33502414 None:intergenic 15.0%
!! CTAAAAAAAGAAAAAAGAAA+GGG + chr4.4:33502334-33502353 MS.gene052346:intron 15.0%
!! TCAAAAGTAATAAAATTCAT+TGG + chr4.4:33501636-33501655 MS.gene052346:intron 15.0%
!! TCAGAAACAATATAAATATA+TGG - chr4.4:33501025-33501044 None:intergenic 15.0%
!!! AAAAAACTAGTATTTTTCTA+TGG - chr4.4:33502596-33502615 None:intergenic 15.0%
!!! AATATAAATATATGGTCTTT+TGG - chr4.4:33501017-33501036 None:intergenic 15.0%
!!! AATCAAACAGTTTTAAAAAA+TGG + chr4.4:33501935-33501954 MS.gene052346:intron 15.0%
!!! AGCTTATATCATTTTTTTAT+TGG + chr4.4:33501175-33501194 MS.gene052346:intron 15.0%
!!! ATATAAATATATGGTCTTTT+GGG - chr4.4:33501016-33501035 None:intergenic 15.0%
!!! ATCAAACAGTTTTAAAAAAT+GGG + chr4.4:33501936-33501955 MS.gene052346:intron 15.0%
!!! GTAATTAAATTAAGAGTATA+GGG - chr4.4:33500949-33500968 None:intergenic 15.0%
!!! TATTACTTTTGATTTTTTAG+GGG - chr4.4:33501628-33501647 None:intergenic 15.0%
!!! TTGGTTTTTTATAAATTCAT+TGG + chr4.4:33501655-33501674 MS.gene052346:intron 15.0%
!!! TTTTCAATTTACAATAATGA+AGG - chr4.4:33501853-33501872 None:intergenic 15.0%
!! AAAGTATATAGAAGATACAT+TGG + chr4.4:33503283-33503302 MS.gene052346:CDS 20.0%
!! AACCACTATAATTATTGTTA+TGG - chr4.4:33502555-33502574 None:intergenic 20.0%
!! AATAATAATAAAAAGGTCCA+AGG - chr4.4:33502677-33502696 None:intergenic 20.0%
!! AATACATAATATTCATGACA+AGG + chr4.4:33503214-33503233 MS.gene052346:CDS 20.0%
!! ACAAACTCGTAAATTAAAAA+TGG - chr4.4:33501901-33501920 None:intergenic 20.0%
!! AGAGAGAAAATCATTATTTA+TGG - chr4.4:33502198-33502217 None:intergenic 20.0%
!! ATAATAATAAAAAGGTCCAA+GGG - chr4.4:33502676-33502695 None:intergenic 20.0%
!! TTAAAAGAAATAATTGGTGA+CGG + chr4.4:33502462-33502481 MS.gene052346:intron 20.0%
!! TTAGATTTCTTGAAGAATTT+AGG - chr4.4:33500821-33500840 None:intergenic 20.0%
!!! AAAACACTTAATTTTTCAAG+TGG - chr4.4:33502135-33502154 None:intergenic 20.0%
!!! ACTTATCTTTATTTTATGAG+TGG - chr4.4:33500971-33500990 None:intergenic 20.0%
!!! AGTATTAACAACTTTTAATG+CGG + chr4.4:33501519-33501538 MS.gene052346:intron 20.0%
!!! GGTAATTAAATTAAGAGTAT+AGG - chr4.4:33500950-33500969 None:intergenic 20.0%
!!! TCAAACAGTTTTAAAAAATG+GGG + chr4.4:33501937-33501956 MS.gene052346:intron 20.0%
! ATTTCTTGAAGAATTTAGGA+AGG - chr4.4:33500817-33500836 None:intergenic 25.0%
! CTCCATAACAATAATTATAG+TGG + chr4.4:33502550-33502569 MS.gene052346:intron 25.0%
! CTTGAACTAGTAATCTATTA+AGG + chr4.4:33502028-33502047 MS.gene052346:intron 25.0%
! GAAAGAAAAAAGTTTGTGAT+TGG + chr4.4:33501468-33501487 MS.gene052346:intron 25.0%
! GATCAAAACTCAAAATATTG+TGG + chr4.4:33500695-33500714 MS.gene052346:CDS 25.0%
! TAAAAAGGCTTAAAACGATA+CGG + chr4.4:33501715-33501734 MS.gene052346:intron 25.0%
! TATTGGCAAAAAAAACATGT+GGG + chr4.4:33501438-33501457 MS.gene052346:intron 25.0%
! TCAATTATATATTGAGATGG+TGG - chr4.4:33502392-33502411 None:intergenic 25.0%
! TGTTGGAACTGAAATTAAAT+TGG + chr4.4:33503328-33503347 MS.gene052346:CDS 25.0%
! TTATTGGCAAAAAAAACATG+TGG + chr4.4:33501437-33501456 MS.gene052346:intron 25.0%
! TTGAAACTGAAATTTCTCAT+TGG - chr4.4:33503264-33503283 None:intergenic 25.0%
!! TATTGTTATGGAGAACATTT+TGG - chr4.4:33502543-33502562 None:intergenic 25.0%
!! TTCTTTGAGAAACTTTACAT+GGG + chr4.4:33500743-33500762 MS.gene052346:CDS 25.0%
!! TTTCTTTGAGAAACTTTACA+TGG + chr4.4:33500742-33500761 MS.gene052346:CDS 25.0%
!!! AGAGTTTAACTTTAAAACAG+AGG + chr4.4:33502000-33502019 MS.gene052346:intron 25.0%
!!! TAGAAATAGTCCTTTTTTGA+AGG + chr4.4:33503355-33503374 MS.gene052346:CDS 25.0%
AAAAAATGGGGAATTAACTG+TGG + chr4.4:33501949-33501968 MS.gene052346:intron 30.0%
ACTAATTGACCACTTTACAA+TGG + chr4.4:33501973-33501992 MS.gene052346:intron 30.0%
AGAAAAAAGTTTGTGATTGG+TGG + chr4.4:33501471-33501490 MS.gene052346:intron 30.0%
ATAAGAGTTGTGATCTTCTA+AGG + chr4.4:33503495-33503514 MS.gene052346:CDS 30.0%
CTCTTTATATAGTGATTGCA+TGG + chr4.4:33502772-33502791 MS.gene052346:intron 30.0%
GAAGAAGAGATTAAACGTTT+AGG + chr4.4:33500902-33500921 MS.gene052346:CDS 30.0%
TATCCATTCTATGTATGTCA+CGG - chr4.4:33502805-33502824 None:intergenic 30.0%
TTATATAGTGATTGCATGGA+GGG + chr4.4:33502776-33502795 MS.gene052346:intron 30.0%
TTGAAGGAAAATGGTGATTT+GGG + chr4.4:33503371-33503390 MS.gene052346:CDS 30.0%
TTTAGTTATGTTTGTGCGTA+AGG - chr4.4:33502319-33502338 None:intergenic 30.0%
TTTATATAGTGATTGCATGG+AGG + chr4.4:33502775-33502794 MS.gene052346:intron 30.0%
TTTGAAGGAAAATGGTGATT+TGG + chr4.4:33503370-33503389 MS.gene052346:CDS 30.0%
! AATTGTTTCTTCTCTCTCTT+TGG + chr4.4:33501051-33501070 MS.gene052346:intron 30.0%
! ACTGACTTAGATGTATACAA+TGG + chr4.4:33501084-33501103 MS.gene052346:intron 30.0%
! CTTCATGTAGAATGTCTTTT+AGG - chr4.4:33502833-33502852 None:intergenic 30.0%
! GGAATTTGCACTTTAAAGAA+AGG + chr4.4:33503162-33503181 MS.gene052346:CDS 30.0%
! TCACCATTTTCCTTCAAAAA+AGG - chr4.4:33503368-33503387 None:intergenic 30.0%
!! ATGGAGAACATTTTGGTATT+TGG - chr4.4:33502536-33502555 None:intergenic 30.0%
!! CTGTTTCTACTTTGATTGAT+GGG - chr4.4:33502872-33502891 None:intergenic 30.0%
!! TACTTTTGCATTTGATGGAT+GGG + chr4.4:33503414-33503433 MS.gene052346:CDS 30.0%
!! TTGCTATTCTTTTGACATGT+GGG + chr4.4:33501409-33501428 MS.gene052346:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr4.4:33501229-33501248 MS.gene052346:intron 30.0%
!!! AGTCCTTTTTTGAAGGAAAA+TGG + chr4.4:33503362-33503381 MS.gene052346:CDS 30.0%
!!! TTTGCTATTCTTTTGACATG+TGG + chr4.4:33501408-33501427 MS.gene052346:intron 30.0%
AAGAAGAAGAAGAATCACCA+CGG + chr4.4:33500531-33500550 MS.gene052346:CDS 35.0%
AATCGCATTCAAAATCGCAT+TGG + chr4.4:33503665-33503684 MS.gene052346:CDS 35.0%
AATGATTTCTTTGCGTAGGA+TGG - chr4.4:33500630-33500649 None:intergenic 35.0%
ACAAGATGAGAATAAAGGGA+TGG + chr4.4:33503547-33503566 MS.gene052346:CDS 35.0%
ACGTTTAATCTCTTCTTCGT+TGG - chr4.4:33500900-33500919 None:intergenic 35.0%
ACTCTTACTCCATTGTAAAG+TGG - chr4.4:33501985-33502004 None:intergenic 35.0%
AGTTTCTCAAAGAAATGTGC+AGG - chr4.4:33500737-33500756 None:intergenic 35.0%
ATAAAGAGCAACCAATCACA+AGG - chr4.4:33501330-33501349 None:intergenic 35.0%
ATAATAAAAAGGTCCAAGGG+CGG - chr4.4:33502673-33502692 None:intergenic 35.0%
ATGATTTCTTTGCGTAGGAT+GGG - chr4.4:33500629-33500648 None:intergenic 35.0%
CCATCAATCAAAGTAGAAAC+AGG + chr4.4:33502870-33502889 MS.gene052346:CDS 35.0%
GATGATGTTCACTCCTAATT+CGG - chr4.4:33503078-33503097 None:intergenic 35.0%
GGAGACAAGATGAGAATAAA+GGG + chr4.4:33503543-33503562 MS.gene052346:CDS 35.0%
GTACTATTTGCCACAATTCA+AGG - chr4.4:33501308-33501327 None:intergenic 35.0%
TATATAGTGATTGCATGGAG+GGG + chr4.4:33502777-33502796 MS.gene052346:intron 35.0%
TGAAGGAAAATGGTGATTTG+GGG + chr4.4:33503372-33503391 MS.gene052346:CDS 35.0%
TGAGAATGAACAATAAGTGC+AGG - chr4.4:33502928-33502947 None:intergenic 35.0%
TGATGTTTGATGTTGCATAG+AGG - chr4.4:33500793-33500812 None:intergenic 35.0%
TGCGGAGATAGAGAAATTTA+TGG + chr4.4:33501537-33501556 MS.gene052346:intron 35.0%
TGGAGACAAGATGAGAATAA+AGG + chr4.4:33503542-33503561 MS.gene052346:CDS 35.0%
TTTAATCTCTTCTTCGTTGG+TGG - chr4.4:33500897-33500916 None:intergenic 35.0%
! AAAGAAAGGTGTGAAGAACT+TGG + chr4.4:33503176-33503195 MS.gene052346:CDS 35.0%
! AATCTAAGATCTCTTCAGTG+TGG + chr4.4:33500834-33500853 MS.gene052346:CDS 35.0%
! ATTTGATGGATGGGTATCAT+GGG + chr4.4:33503423-33503442 MS.gene052346:CDS 35.0%
! GTACTTTTGCATTTGATGGA+TGG + chr4.4:33503413-33503432 MS.gene052346:CDS 35.0%
! TTCTCATTGGTTATAATCCC+CGG - chr4.4:33503251-33503270 None:intergenic 35.0%
!! CCTGTTTCTACTTTGATTGA+TGG - chr4.4:33502873-33502892 None:intergenic 35.0%
!! TGATGCTGATTTCTTCATCT+TGG - chr4.4:33502998-33503017 None:intergenic 35.0%
!!! AAGATACATTGGCTTTTCCT+TGG + chr4.4:33503294-33503313 MS.gene052346:CDS 35.0%
!!! AGAGGTACTTTTGCATTTGA+TGG + chr4.4:33503409-33503428 MS.gene052346:CDS 35.0%
!!! GAAGTCGTTTTATTTCTGAG+AGG - chr4.4:33502965-33502984 None:intergenic 35.0%
!!! TGACATGTGGGTTTTGTTAT+TGG + chr4.4:33501421-33501440 MS.gene052346:intron 35.0%
AACAACTAACGTCCCCATAA+CGG + chr4.4:33503112-33503131 MS.gene052346:CDS 40.0%
AAGTGCAAATTCCCAACTCT+CGG - chr4.4:33503155-33503174 None:intergenic 40.0%
AGATGATGTGCAATATCTGG+TGG - chr4.4:33503629-33503648 None:intergenic 40.0%
AGCGAATGATTTCTTTGCGT+AGG - chr4.4:33500634-33500653 None:intergenic 40.0%
AGTGCAGGATTGTTCTTTCT+TGG - chr4.4:33502913-33502932 None:intergenic 40.0%
ATCCCATCCAGTTAGCATAA+GGG - chr4.4:33500862-33500881 None:intergenic 40.0%
CGCAAAGAAATCATTCGCTA+TGG + chr4.4:33500635-33500654 MS.gene052346:CDS 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr4.4:33501305-33501324 None:intergenic 40.0%
GAGAAACTTTACATGGGAGA+TGG + chr4.4:33500749-33500768 MS.gene052346:CDS 40.0%
GATGTATGGAGAGAAATCCA+AGG + chr4.4:33500566-33500585 MS.gene052346:CDS 40.0%
GCAAGATGATGTGCAATATC+TGG - chr4.4:33503632-33503651 None:intergenic 40.0%
GGAAGGTCTATTAGATCCAA+TGG + chr4.4:33500601-33500620 MS.gene052346:CDS 40.0%
GGCAAATAGTACCTTGTGAT+TGG + chr4.4:33501316-33501335 MS.gene052346:intron 40.0%
GGGGTGTACACATAATTTAG+AGG + chr4.4:33503391-33503410 MS.gene052346:CDS 40.0%
TAGGGTACATACCTATGTCA+CGG - chr4.4:33500931-33500950 None:intergenic 40.0%
TATCCCATCCAGTTAGCATA+AGG - chr4.4:33500863-33500882 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr4.4:33501282-33501301 None:intergenic 40.0%
TTCTCATCTTGTCTCCAATG+TGG - chr4.4:33503539-33503558 None:intergenic 40.0%
TTGATGTTGCATAGAGGTAG+CGG - chr4.4:33500787-33500806 None:intergenic 40.0%
! CATTTGATGGATGGGTATCA+TGG + chr4.4:33503422-33503441 MS.gene052346:CDS 40.0%
! GATCTTCTAAGGAGTGAGTT+TGG + chr4.4:33503506-33503525 MS.gene052346:CDS 40.0%
AAAAAGTAAAGGTCCGCCCT+TGG + chr4.4:33502657-33502676 MS.gene052346:intron 45.0%
AAATCCAAGGCGAGAACAAC+TGG + chr4.4:33500579-33500598 MS.gene052346:CDS 45.0%
AATCCAAGGCGAGAACAACT+GGG + chr4.4:33500580-33500599 MS.gene052346:CDS 45.0%
AGCCCTTATGCTAACTGGAT+GGG + chr4.4:33500857-33500876 MS.gene052346:CDS 45.0%
ATAACGGTTTACTCGTTCGC+GGG + chr4.4:33503128-33503147 MS.gene052346:CDS 45.0%
ATTGGTTATAATCCCCGGCA+CGG - chr4.4:33503246-33503265 None:intergenic 45.0%
CATAACGGTTTACTCGTTCG+CGG + chr4.4:33503127-33503146 MS.gene052346:CDS 45.0%
CCAACATGAGCATAACTCCA+AGG - chr4.4:33503314-33503333 None:intergenic 45.0%
CCTTGGAGTTATGCTCATGT+TGG + chr4.4:33503311-33503330 MS.gene052346:CDS 45.0%
CGAACGAGTAAACCGTTATG+GGG - chr4.4:33503127-33503146 None:intergenic 45.0%
GAAATCAGCATCACAGTCAC+AGG + chr4.4:33503005-33503024 MS.gene052346:CDS 45.0%
GCACCGTGACATACATAGAA+TGG + chr4.4:33502799-33502818 MS.gene052346:CDS 45.0%
GCGAACGAGTAAACCGTTAT+GGG - chr4.4:33503128-33503147 None:intergenic 45.0%
GCTTACGACATAGCCGAATT+AGG + chr4.4:33503062-33503081 MS.gene052346:CDS 45.0%
GGAGTGAACATCATCGAAGA+CGG + chr4.4:33503083-33503102 MS.gene052346:CDS 45.0%
TCATCTTGTCTCCAATGTGG+TGG - chr4.4:33503536-33503555 None:intergenic 45.0%
! AAAACGATACGGCGCTGAAA+AGG + chr4.4:33501726-33501745 MS.gene052346:intron 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr4.4:33501288-33501307 None:intergenic 45.0%
! GCATTGGTAGCTTCCAATCA+AGG + chr4.4:33503681-33503700 MS.gene052346:CDS 45.0%
!! AGTTTGGTGTTCCACCACAT+TGG + chr4.4:33503522-33503541 MS.gene052346:CDS 45.0%
!! TATGTCGTAAGCGCTGAGTA+TGG - chr4.4:33503054-33503073 None:intergenic 45.0%
!! TCAAACCGATGATGGAAGGT+GGG + chr4.4:33503571-33503590 MS.gene052346:CDS 45.0%
!! TGGTTCAAACCGATGATGGA+AGG + chr4.4:33503567-33503586 MS.gene052346:CDS 45.0%
!! TTCAAACCGATGATGGAAGG+TGG + chr4.4:33503570-33503589 MS.gene052346:CDS 45.0%
ACAGTCACAGGACACAGTCT+TGG + chr4.4:33503017-33503036 MS.gene052346:CDS 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr4.4:33501295-33501314 MS.gene052346:intron 50.0%
CACAACCCACCTTCCATCAT+CGG - chr4.4:33503579-33503598 None:intergenic 50.0%
CATCTTCCTCTTCGTGCAGT+TGG - chr4.4:33500496-33500515 None:intergenic 50.0%
CGCGAACGAGTAAACCGTTA+TGG - chr4.4:33503129-33503148 None:intergenic 50.0%
GAGCCCTTATGCTAACTGGA+TGG + chr4.4:33500856-33500875 MS.gene052346:CDS 50.0%
GGCTTTCGTTGAGCGATGTA+TGG + chr4.4:33500552-33500571 MS.gene052346:CDS 50.0%
GGGATGGTTCAAACCGATGA+TGG + chr4.4:33503563-33503582 MS.gene052346:CDS 50.0%
TAACGGTTTACTCGTTCGCG+GGG + chr4.4:33503129-33503148 MS.gene052346:CDS 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr4.4:33501300-33501319 None:intergenic 50.0%
TGTGGAGCCCTTATGCTAAC+TGG + chr4.4:33500852-33500871 MS.gene052346:CDS 50.0%
TTGCGTAGGATGGGATCCAT+TGG - chr4.4:33500620-33500639 None:intergenic 50.0%
! GATACGGCGCTGAAAAGGAA+CGG + chr4.4:33501731-33501750 MS.gene052346:intron 50.0%
! TGCATAGAGGTAGCGGCTTA+TGG - chr4.4:33500780-33500799 None:intergenic 50.0%
!! GTAAGCGCTGAGTATGGCTA+GGG - chr4.4:33503048-33503067 None:intergenic 50.0%
ACATCGCTCAACGAAAGCCG+TGG - chr4.4:33500551-33500570 None:intergenic 55.0%
CAAGGCGAGAACAACTGGGA+AGG + chr4.4:33500584-33500603 MS.gene052346:CDS 55.0%
CTTCCCAGTTGTTCTCGCCT+TGG - chr4.4:33500586-33500605 None:intergenic 55.0%
GGTGGATGAGCTTCCACTAG+AGG - chr4.4:33503611-33503630 None:intergenic 55.0%
GTTATAATCCCCGGCACGGT+TGG - chr4.4:33503242-33503261 None:intergenic 55.0%
TGACAAGGTTCCAACCGTGC+CGG + chr4.4:33503229-33503248 MS.gene052346:CDS 55.0%
! CGTTTAGGACGCCGTGACAT+AGG + chr4.4:33500917-33500936 MS.gene052346:CDS 55.0%
!! CGTAAGCGCTGAGTATGGCT+AGG - chr4.4:33503049-33503068 None:intergenic 55.0%
!! GAAGGTGGGTTGTGCCTGAA+CGG + chr4.4:33503585-33503604 MS.gene052346:CDS 55.0%
ACAAGGTTCCAACCGTGCCG+GGG + chr4.4:33503231-33503250 MS.gene052346:CDS 60.0%
GACAAGGTTCCAACCGTGCC+GGG + chr4.4:33503230-33503249 MS.gene052346:CDS 60.0%
GCTTCCACTAGAGGCCGTTC+AGG - chr4.4:33503602-33503621 None:intergenic 60.0%
TGTGCCTGAACGGCCTCTAG+TGG + chr4.4:33503595-33503614 MS.gene052346:CDS 60.0%
CGTTCGCGGGGCCGAGAGTT+GGG + chr4.4:33503141-33503160 MS.gene052346:CDS 70.0%
TCGTTCGCGGGGCCGAGAGT+TGG + chr4.4:33503140-33503159 MS.gene052346:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 33500488 33503712 33500488 ID=MS.gene052346
chr4.4 mRNA 33500488 33503712 33500488 ID=MS.gene052346.t1;Parent=MS.gene052346
chr4.4 exon 33500488 33500938 33500488 ID=MS.gene052346.t1.exon1;Parent=MS.gene052346.t1
chr4.4 CDS 33500488 33500938 33500488 ID=cds.MS.gene052346.t1;Parent=MS.gene052346.t1
chr4.4 exon 33502784 33503712 33502784 ID=MS.gene052346.t1.exon2;Parent=MS.gene052346.t1
chr4.4 CDS 33502784 33503712 33502784 ID=cds.MS.gene052346.t1;Parent=MS.gene052346.t1
Gene Sequence

>MS.gene052346

ATGAACCAACTGCACGAAGAGGAAGATGAAGAAGAAGAAAAAGAAGAAGAAGAAGAATCACCACGGCTTTCGTTGAGCGATGTATGGAGAGAAATCCAAGGCGAGAACAACTGGGAAGGTCTATTAGATCCAATGGATCCCATCCTACGCAAAGAAATCATTCGCTATGGTGAGCTAGCTCAAGCATGTTACGATTCATTCGACTTTGATCAAAACTCAAAATATTGTGGAACATGCAAGTATCATCCTGCACATTTCTTTGAGAAACTTTACATGGGAGATGGATACACCATAAGCCGCTACCTCTATGCAACATCAAACATCAACCTTCCTAAATTCTTCAAGAAATCTAAGATCTCTTCAGTGTGGAGCCCTTATGCTAACTGGATGGGATACATAGCTGTTTCCACCAACGAAGAAGAGATTAAACGTTTAGGACGCCGTGACATAGGTATGTACCCTATACTCTTAATTTAATTACCACTCATAAAATAAAGATAAGTGCTTCTCAAACTGATTTTTTGACCCAAAAGACCATATATTTATATTGTTTCTGACGTTAAAATTGTTTCTTCTCTCTCTTTGGTGTCAGACTTACTGACTTAGATGTATACAATGGAAATCTTGTGTTCAAATAACTCAACATTAAGACGAAGTTCGTACAATTAATATTATGATCTTATCAAGAGCTTATATCATTTTTTTATTGGAAAATGCTATTTATCTAGAAAAATAGCATCAAGAATTTTTCAAGACACATGTGGCAAGTTTTAATTGCATGATTTATTTGTCCACTTCCTATTTTTCAGCCACACCTCCTTGAATTGTGGCAAATAGTACCTTGTGATTGGTTGCTCTTTATTCTTGAAGAATTCTTGATGTTTTTTTTCTAGATATATAGCATTGCTCTTATTTATTAATTTGCTATTCTTTTGACATGTGGGTTTTGTTATTGGCAAAAAAAACATGTGGGTTTTGTAGAAAGAAAAAAGTTTGTGATTGGTGGTCATAATAAATTTCAAAGTTCAAATAGTATTAACAACTTTTAATGCGGAGATAGAGAAATTTATGGAATTCAGATGTAATAAATACTCAAAGATATTATAGAAAAAATATAATTTTATCAAAGTAATAGAACCCCTAAAAAATCAAAAGTAATAAAATTCATTGGTTTTTTATAAATTCATTGGTTTTATTAGTATGTGTAAAAAAAATAAAAAATAAAAATAAAAAGGCTTAAAACGATACGGCGCTGAAAAGGAACGGTGTGAGTAACATTTTTTTAATAATTATTCTAAGTTTTGTACAACTTAATGCTTAAAAAAAATTATGTCATCTAACGTTTTCCTTTTTTTTTTTTTACCTTCATTATTGTAAATTGAAAAAAGAATAAATTAAAAATTCTATATGCCATTTTTAATTTACGAGTTTGTTGAATCTCTAATTTAATCAAACAGTTTTAAAAAATGGGGAATTAACTGTGGTACTAATTGACCACTTTACAATGGAGTAAGAGTTTAACTTTAAAACAGAGGAGCTACTTGAACTAGTAATCTATTAAGGTTATAAAGTTAAACTCTTACAACTCATATAACAATCGAGAATTTTAAGAAATCATGCGTAAACTATAGTTGAAAAAACTTTCCACTTGAAAAATTAAGTGTTTTAAAAATATATTTTTCATTAATATAGTTGAAAACACGTACACCATAAATAATGATTTTCTCTCTCTTTTATTAAAAATTATTTTCTTCAAAAGCTATCAAAGCAGCTAGTATTTCATTTTCAGCATAAAAATTATTTTTAAACAAAATAATCTTTAAATGAACCTTACGCACAAACATAACTAAAAAAAGAAAAAAGAAAGGGCTTAAATATTCTCTATATTCATTATGTATAATCCACCATCTCAATATATAATTGAAATTTTTTTTTTGAAGAAATATATAATTGAAATTTAATTTATTCATGTTTTTAAAAGAAATAATTGGTGACGGTTAATTTGTATAAAAATAATGTGTTAAAAGACTAAAATATCTTTTTTGCCAAATACCAAAATGTTCTCCATAACAATAATTATAGTGGTTGAAAATATTATTTATAAACCATAGAAAAATACTAGTTTTTTTTTTTATTTCAAAGTGTCAAATAATATAAAAAATTTCTTCAAAAAAGTAAAGGTCCGCCCTTGGACCTTTTTATTATTATTATTTTTTAACAAAACTATTATTATTATTGATGTGTTAAATTTATTTTTTACTAAAAATACTAAAGATAATATTTTCTCTTTATATAGTGATTGCATGGAGGGGCACCGTGACATACATAGAATGGATATACGACCTAAAAGACATTCTACATGAAGCAAACTTCAAAAACGACCCATCAATCAAAGTAGAAACAGGATTCTACGACTTATACACCAAGAAAGAACAATCCTGCACTTATTGTTCATTCTCAGCTCGAGAACAAGTCCTCTCAGAAATAAAACGACTTCTTCAATTCTACCAAGATGAAGAAATCAGCATCACAGTCACAGGACACAGTCTTGGTGCTGCCCTAGCCATACTCAGCGCTTACGACATAGCCGAATTAGGAGTGAACATCATCGAAGACGGTGACAAAACAACTAACGTCCCCATAACGGTTTACTCGTTCGCGGGGCCGAGAGTTGGGAATTTGCACTTTAAAGAAAGGTGTGAAGAACTTGGTGTTAAAGTTTTGAGAATACATAATATTCATGACAAGGTTCCAACCGTGCCGGGGATTATAACCAATGAGAAATTTCAGTTTCAAAAGTATATAGAAGATACATTGGCTTTTCCTTGGAGTTATGCTCATGTTGGAACTGAAATTAAATTGGATCATAGAAATAGTCCTTTTTTGAAGGAAAATGGTGATTTGGGGTGTACACATAATTTAGAGGTACTTTTGCATTTGATGGATGGGTATCATGGGAAAGATAAAAAATTTAATATGGTTTCAAAAAGGGATATTGCACTTGTGAATAAGAGTTGTGATCTTCTAAGGAGTGAGTTTGGTGTTCCACCACATTGGAGACAAGATGAGAATAAAGGGATGGTTCAAACCGATGATGGAAGGTGGGTTGTGCCTGAACGGCCTCTAGTGGAAGCTCATCCACCAGATATTGCACATCATCTTGCATTAGTGCTTAAAAATCGCATTCAAAATCGCATTGGTAGCTTCCAATCAAGGACCACGTGA

Protein sequence

>MS.gene052346.t1

MNQLHEEEDEEEEKEEEEESPRLSLSDVWREIQGENNWEGLLDPMDPILRKEIIRYGELAQACYDSFDFDQNSKYCGTCKYHPAHFFEKLYMGDGYTISRYLYATSNINLPKFFKKSKISSVWSPYANWMGYIAVSTNEEEIKRLGRRDIVIAWRGTVTYIEWIYDLKDILHEANFKNDPSIKVETGFYDLYTKKEQSCTYCSFSAREQVLSEIKRLLQFYQDEEISITVTGHSLGAALAILSAYDIAELGVNIIEDGDKTTNVPITVYSFAGPRVGNLHFKERCEELGVKVLRIHNIHDKVPTVPGIITNEKFQFQKYIEDTLAFPWSYAHVGTEIKLDHRNSPFLKENGDLGCTHNLEVLLHLMDGYHGKDKKFNMVSKRDIALVNKSCDLLRSEFGVPPHWRQDENKGMVQTDDGRWVVPERPLVEAHPPDIAHHLALVLKNRIQNRIGSFQSRTT