Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07046.t1 | AFK49536.1 | 99 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07046.t1 | G7KST0 | 99.0 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050409 | MS.gene07046 | 0.995125 | 3.02E-213 | -1.69E-46 |
| MS.gene050410 | MS.gene07046 | 0.906766 | 1.04E-80 | -1.69E-46 |
| MS.gene050412 | MS.gene07046 | 0.994734 | 9.66E-210 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07046.t1 | MTR_7g109460 | 99.010 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 2.96e-148 | 410 |
| MS.gene07046.t1 | MTR_7g109460 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 4.89e-119 | 335 |
| MS.gene07046.t1 | MTR_1g087150 | 62.376 | 202 | 67 | 2 | 1 | 193 | 1 | 202 | 3.76e-76 | 228 |
| MS.gene07046.t1 | MTR_1g087150 | 61.321 | 212 | 72 | 3 | 1 | 202 | 1 | 212 | 5.42e-76 | 228 |
| MS.gene07046.t1 | MTR_1g108490 | 38.378 | 185 | 104 | 3 | 17 | 194 | 56 | 237 | 2.23e-45 | 151 |
| MS.gene07046.t1 | MTR_1g108490 | 41.935 | 155 | 80 | 3 | 17 | 164 | 56 | 207 | 6.73e-38 | 130 |
| MS.gene07046.t1 | MTR_7g082950 | 36.364 | 187 | 106 | 6 | 19 | 200 | 15 | 193 | 4.95e-36 | 125 |
| MS.gene07046.t1 | MTR_8g467220 | 38.974 | 195 | 106 | 5 | 9 | 194 | 56 | 246 | 5.12e-36 | 127 |
| MS.gene07046.t1 | MTR_5g040650 | 39.153 | 189 | 101 | 6 | 20 | 198 | 70 | 254 | 2.36e-31 | 115 |
| MS.gene07046.t1 | MTR_5g040650 | 37.755 | 196 | 108 | 6 | 9 | 194 | 59 | 250 | 1.51e-30 | 113 |
| MS.gene07046.t1 | MTR_7g082950 | 38.562 | 153 | 83 | 5 | 19 | 166 | 15 | 161 | 3.27e-28 | 104 |
| MS.gene07046.t1 | MTR_7g010610 | 38.318 | 107 | 57 | 4 | 1 | 105 | 16 | 115 | 1.01e-17 | 77.4 |
| MS.gene07046.t1 | MTR_3g053370 | 51.613 | 62 | 6 | 1 | 32 | 93 | 3 | 40 | 3.53e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07046.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 2.75e-60 | 187 |
| MS.gene07046.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 3.58e-60 | 187 |
| MS.gene07046.t1 | AT4G02075 | 50.000 | 194 | 86 | 5 | 1 | 192 | 1 | 185 | 2.32e-54 | 172 |
| MS.gene07046.t1 | AT4G02075 | 49.485 | 194 | 87 | 5 | 1 | 192 | 1 | 185 | 3.69e-54 | 171 |
| MS.gene07046.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.58e-44 | 149 |
| MS.gene07046.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.58e-44 | 149 |
| MS.gene07046.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene07046.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene07046.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene07046.t1 | AT4G02075 | 49.704 | 169 | 74 | 5 | 1 | 167 | 1 | 160 | 7.61e-44 | 144 |
| MS.gene07046.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07046.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07046.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07046.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07046.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07046.t1 | AT5G38070 | 36.612 | 183 | 93 | 5 | 15 | 186 | 49 | 219 | 1.94e-32 | 117 |
| MS.gene07046.t1 | AT3G47550 | 38.983 | 177 | 93 | 4 | 20 | 186 | 69 | 240 | 3.11e-30 | 112 |
| MS.gene07046.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 3.50e-30 | 112 |
| MS.gene07046.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 3.50e-30 | 112 |
| MS.gene07046.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 4.00e-28 | 107 |
| MS.gene07046.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 4.00e-28 | 107 |
| MS.gene07046.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 91 | 271 | 5.55e-28 | 107 |
| MS.gene07046.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene07046.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene07046.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene07046.t1 | AT2G02960 | 43.066 | 137 | 68 | 3 | 20 | 149 | 43 | 176 | 3.02e-26 | 102 |
| MS.gene07046.t1 | AT3G47550 | 42.623 | 122 | 56 | 3 | 20 | 132 | 69 | 185 | 2.48e-23 | 93.6 |
| MS.gene07046.t1 | AT1G02610 | 37.984 | 129 | 73 | 4 | 70 | 194 | 2 | 127 | 9.39e-20 | 82.0 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTAATCGATGATTTA+AGG | 0.215992 | 7.1:-4730039 | MS.gene07046:CDS |
| CTTACGGTAAGAAGTGTAAA+TGG | 0.234459 | 7.1:+4727934 | None:intergenic |
| GAAGCACCTTGTTCTTGTTC+TGG | 0.299149 | 7.1:-4729950 | MS.gene07046:CDS |
| CGCGTTTCACTGTCGATCAT+TGG | 0.320595 | 7.1:-4728734 | MS.gene07046:CDS |
| ACAAGAACAAGGTGCTTCTA+AGG | 0.336965 | 7.1:+4729955 | None:intergenic |
| ACAAGGTGCTTCTAAGGCTT+TGG | 0.357018 | 7.1:+4729961 | None:intergenic |
| GTTGTAGGTCATTGTTCTAA+AGG | 0.358971 | 7.1:-4727811 | MS.gene07046:intron |
| AGCTTTCAAACTCTTCTTCA+TGG | 0.379338 | 7.1:+4729984 | None:intergenic |
| TTCTTGTTCTGGAACTGTTA+AGG | 0.379888 | 7.1:-4729939 | MS.gene07046:intron |
| TAGTGGTAGAGCTGCATTCC+GGG | 0.387977 | 7.1:+4728764 | None:intergenic |
| TTAGTGGTAGAGCTGCATTC+CGG | 0.388354 | 7.1:+4728763 | None:intergenic |
| TGGAGGAGGAGCTGTATATC+CGG | 0.422547 | 7.1:+4729150 | None:intergenic |
| GTTACTAGTAAGACATTGTT+TGG | 0.431240 | 7.1:-4727986 | MS.gene07046:CDS |
| AACGCGGTAAAGTACCTTAT+GGG | 0.451704 | 7.1:+4729097 | None:intergenic |
| TAATCTTCGGTTCCACTTGT+GGG | 0.462880 | 7.1:+4727958 | None:intergenic |
| ATGATGAAGCAATGCCCATA+AGG | 0.464358 | 7.1:-4729111 | MS.gene07046:intron |
| GTGAAACGCGGTTCTGTTAG+TGG | 0.469197 | 7.1:+4728747 | None:intergenic |
| GAGCCATTCTGAATAGCATT+AGG | 0.470162 | 7.1:-4727743 | MS.gene07046:CDS |
| GTAATCTTCGGTTCCACTTG+TGG | 0.490070 | 7.1:+4727957 | None:intergenic |
| CAGAATGGCTCCGATTGTCT+TGG | 0.492886 | 7.1:+4727755 | None:intergenic |
| TACATAGTTACCAAGACAAT+CGG | 0.492892 | 7.1:-4727765 | MS.gene07046:CDS |
| AATAGCATTAGGCGCTATCA+AGG | 0.494672 | 7.1:-4727732 | MS.gene07046:CDS |
| TGTCTTGGTAACTATGTACA+TGG | 0.500550 | 7.1:+4727770 | None:intergenic |
| AAGTGTAAATGGGTAATCTT+CGG | 0.501901 | 7.1:+4727945 | None:intergenic |
| CAAAGATGGTGTAACGAGAA+AGG | 0.507130 | 7.1:-4729757 | MS.gene07046:CDS |
| GATGATTTAAGGTTACTCTC+TGG | 0.510571 | 7.1:-4730028 | MS.gene07046:CDS |
| GGAGGAGGAGCTGTATATCC+GGG | 0.519973 | 7.1:+4729151 | None:intergenic |
| TTACGGTAAGAAGTGTAAAT+GGG | 0.521582 | 7.1:+4727935 | None:intergenic |
| ATAGAGATTGCATACAAAGA+TGG | 0.547272 | 7.1:-4729771 | MS.gene07046:CDS |
| AACATGTGAAATATGTCTCC+AGG | 0.548388 | 7.1:-4729728 | MS.gene07046:intron |
| GTCATTGTTCTAAAGGCTTG+CGG | 0.555397 | 7.1:-4727804 | MS.gene07046:CDS |
| GCGCCTAATGCTATTCAGAA+TGG | 0.556703 | 7.1:+4727740 | None:intergenic |
| TGTAATAGAAAGTGATTACC+CGG | 0.600485 | 7.1:-4728782 | MS.gene07046:CDS |
| TGTTTGGTAGTGCCCACAAG+TGG | 0.604389 | 7.1:-4727970 | MS.gene07046:CDS |
| ATAAGAGAAAGTGAGGTGGA+AGG | 0.645126 | 7.1:-4728808 | MS.gene07046:CDS |
| AAACGCGATAAGAGAAAGTG+AGG | 0.650705 | 7.1:-4728815 | MS.gene07046:CDS |
| CGCGATAAGAGAAAGTGAGG+TGG | 0.650995 | 7.1:-4728812 | MS.gene07046:CDS |
| GTCTTGGTAACTATGTACAT+GGG | 0.665639 | 7.1:+4727771 | None:intergenic |
| CAATGATCGACAGTGAAACG+CGG | 0.703113 | 7.1:+4728735 | None:intergenic |
| ACAGTTCCAGAACAAGAACA+AGG | 0.719305 | 7.1:+4729944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAACACATTTAAT+TGG | - | chr7.1:4728851-4728870 | MS.gene07046:intron | 10.0% |
| !! | TTTCATTCAAAATTAAAATA+CGG | + | chr7.1:4729864-4729883 | None:intergenic | 10.0% |
| !! | AATAGAAAGAAAAAATAAAG+AGG | - | chr7.1:4728180-4728199 | MS.gene07046:intron | 15.0% |
| !! | ATAGAAAGAAAAAATAAAGA+GGG | - | chr7.1:4728181-4728200 | MS.gene07046:intron | 15.0% |
| !! | ATATAAGTCAAAATTAGATT+GGG | + | chr7.1:4728281-4728300 | None:intergenic | 15.0% |
| !! | CTACAAATTATAATATCAAA+TGG | + | chr7.1:4728453-4728472 | None:intergenic | 15.0% |
| !! | TATATAAGTCAAAATTAGAT+TGG | + | chr7.1:4728282-4728301 | None:intergenic | 15.0% |
| !!! | AAAAACTGTAAGTTATTTTT+CGG | + | chr7.1:4729733-4729752 | None:intergenic | 15.0% |
| !!! | AAATTTGATAACACATTTTA+AGG | - | chr7.1:4728904-4728923 | MS.gene07046:intron | 15.0% |
| !!! | AATTTGATAACACATTTTAA+GGG | - | chr7.1:4728905-4728924 | MS.gene07046:intron | 15.0% |
| !!! | CATTTGATATTATAATTTGT+AGG | - | chr7.1:4728451-4728470 | MS.gene07046:intron | 15.0% |
| !!! | GTATTTTAATTTTGAATGAA+AGG | - | chr7.1:4729863-4729882 | MS.gene07046:intron | 15.0% |
| !! | AAATAAAGTTGCATGAATTT+AGG | - | chr7.1:4729169-4729188 | MS.gene07046:intron | 20.0% |
| !! | AATAAAGTTGCATGAATTTA+GGG | - | chr7.1:4729170-4729189 | MS.gene07046:intron | 20.0% |
| !! | GCATGATAAATATAAAAGAT+GGG | - | chr7.1:4728535-4728554 | MS.gene07046:intron | 20.0% |
| !! | TGCATGATAAATATAAAAGA+TGG | - | chr7.1:4728534-4728553 | MS.gene07046:intron | 20.0% |
| !!! | ATTTGATAACACATTTTAAG+GGG | - | chr7.1:4728906-4728925 | MS.gene07046:intron | 20.0% |
| !!! | TATAATTTGTAGGAATTATC+AGG | - | chr7.1:4728461-4728480 | MS.gene07046:intron | 20.0% |
| !!! | TCATTTATCTCTGATTTTTT+TGG | + | chr7.1:4728632-4728651 | None:intergenic | 20.0% |
| !!! | TTTGTTATATAAACTCTTCT+AGG | + | chr7.1:4729270-4729289 | None:intergenic | 20.0% |
| ! | AATTATGTTGTGACGTAAAT+TGG | - | chr7.1:4728247-4728266 | MS.gene07046:intron | 25.0% |
| ! | GAAATGAAGATAGAACTAAA+GGG | + | chr7.1:4728431-4728450 | None:intergenic | 25.0% |
| ! | TGTTACTAATCGATGATTTA+AGG | - | chr7.1:4727720-4727739 | MS.gene07046:CDS | 25.0% |
| ! | TTAAATTTCTCAGCTAATCA+TGG | - | chr7.1:4728405-4728424 | MS.gene07046:intron | 25.0% |
| ! | TTATGTTCATTGTATGCATA+AGG | + | chr7.1:4728497-4728516 | None:intergenic | 25.0% |
| ! | TTCATAAAATGCCATTAGTA+CGG | + | chr7.1:4729920-4729939 | None:intergenic | 25.0% |
| !! | ACGATTACTTTCAAACTTTT+AGG | - | chr7.1:4729469-4729488 | MS.gene07046:intron | 25.0% |
| !! | AGAAAACAATACACGTTTTT+GGG | + | chr7.1:4729362-4729381 | None:intergenic | 25.0% |
| !! | TAATGCTATGCTATTTGATT+AGG | + | chr7.1:4729109-4729128 | None:intergenic | 25.0% |
| !! | TAGAAAACAATACACGTTTT+TGG | + | chr7.1:4729363-4729382 | None:intergenic | 25.0% |
| !! | TTTAATTTAACCTGCAGTTA+GGG | - | chr7.1:4729629-4729648 | MS.gene07046:intron | 25.0% |
| !!! | CTTTTTGATTGAATTAAACG+CGG | + | chr7.1:4728681-4728700 | None:intergenic | 25.0% |
| !!! | TTATGAACTACTTTTGTTGT+AGG | - | chr7.1:4729933-4729952 | MS.gene07046:intron | 25.0% |
| !!! | TTTATCTCTGATTTTTTTGG+AGG | + | chr7.1:4728629-4728648 | None:intergenic | 25.0% |
| !!! | TTTGATAACACATTTTAAGG+GGG | - | chr7.1:4728907-4728926 | MS.gene07046:intron | 25.0% |
| !!! | TTTTTTTAGACATGAAAGCA+TGG | + | chr7.1:4729584-4729603 | None:intergenic | 25.0% |
| AAGTGTAAATGGGTAATCTT+CGG | + | chr7.1:4729817-4729836 | None:intergenic | 30.0% | |
| ATAGAGATTGCATACAAAGA+TGG | - | chr7.1:4727988-4728007 | MS.gene07046:CDS | 30.0% | |
| GGAAATGAAGATAGAACTAA+AGG | + | chr7.1:4728432-4728451 | None:intergenic | 30.0% | |
| GTTACTAGTAAGACATTGTT+TGG | - | chr7.1:4729773-4729792 | MS.gene07046:CDS | 30.0% | |
| TACATAGTTACCAAGACAAT+CGG | - | chr7.1:4729994-4730013 | MS.gene07046:CDS | 30.0% | |
| TATTAAGTCTTAGCTACACA+TGG | - | chr7.1:4728739-4728758 | MS.gene07046:CDS | 30.0% | |
| TGTAATAGAAAGTGATTACC+CGG | - | chr7.1:4728977-4728996 | MS.gene07046:intron | 30.0% | |
| ! | CTTTAATTTAACCTGCAGTT+AGG | - | chr7.1:4729628-4729647 | MS.gene07046:intron | 30.0% |
| ! | TTACGGTAAGAAGTGTAAAT+GGG | + | chr7.1:4729827-4729846 | None:intergenic | 30.0% |
| !! | TCAAACTTTTAGGTCACATT+TGG | - | chr7.1:4729479-4729498 | MS.gene07046:intron | 30.0% |
| !! | TTGATAACACATTTTAAGGG+GGG | - | chr7.1:4728908-4728927 | MS.gene07046:intron | 30.0% |
| AACATGTGAAATATGTCTCC+AGG | - | chr7.1:4728031-4728050 | MS.gene07046:intron | 35.0% | |
| AGCTTTCAAACTCTTCTTCA+TGG | + | chr7.1:4727778-4727797 | None:intergenic | 35.0% | |
| ATGTTGTGACGTAAATTGGA+TGG | - | chr7.1:4728251-4728270 | MS.gene07046:intron | 35.0% | |
| CATGCAATGATGTATTCTGT+AGG | - | chr7.1:4729703-4729722 | MS.gene07046:intron | 35.0% | |
| CGGAAATCAAGTACTACTTA+CGG | + | chr7.1:4729844-4729863 | None:intergenic | 35.0% | |
| GAACTACTAGAGTACATAGT+CGG | + | chr7.1:4729532-4729551 | None:intergenic | 35.0% | |
| GAAGCTGGTCAAATTAAAAC+TGG | - | chr7.1:4729670-4729689 | MS.gene07046:intron | 35.0% | |
| GTTGTAGGTCATTGTTCTAA+AGG | - | chr7.1:4729948-4729967 | MS.gene07046:CDS | 35.0% | |
| TAATCATCATCACACATACC+TGG | + | chr7.1:4728052-4728071 | None:intergenic | 35.0% | |
| TAGGGAAAATAACGAGTCAA+GGG | - | chr7.1:4729188-4729207 | MS.gene07046:intron | 35.0% | |
| TGTTGTGACGTAAATTGGAT+GGG | - | chr7.1:4728252-4728271 | MS.gene07046:intron | 35.0% | |
| TTAGGGAAAATAACGAGTCA+AGG | - | chr7.1:4729187-4729206 | MS.gene07046:intron | 35.0% | |
| ! | CTTACGGTAAGAAGTGTAAA+TGG | + | chr7.1:4729828-4729847 | None:intergenic | 35.0% |
| ! | GATGATTTAAGGTTACTCTC+TGG | - | chr7.1:4727731-4727750 | MS.gene07046:CDS | 35.0% |
| ! | GGTGCAACTATTTTATACGT+TGG | - | chr7.1:4728768-4728787 | MS.gene07046:CDS | 35.0% |
| ! | GTCTTGGTAACTATGTACAT+GGG | + | chr7.1:4729991-4730010 | None:intergenic | 35.0% |
| ! | TGTCTTGGTAACTATGTACA+TGG | + | chr7.1:4729992-4730011 | None:intergenic | 35.0% |
| ! | TTTTTGCAGCAATATGAACC+CGG | - | chr7.1:4728590-4728609 | MS.gene07046:intron | 35.0% |
| !! | TTCTTGTTCTGGAACTGTTA+AGG | - | chr7.1:4727820-4727839 | MS.gene07046:intron | 35.0% |
| !!! | ATCTCTGATTTTTTTGGAGG+AGG | + | chr7.1:4728626-4728645 | None:intergenic | 35.0% |
| AAACGCGATAAGAGAAAGTG+AGG | - | chr7.1:4728944-4728963 | MS.gene07046:intron | 40.0% | |
| AATAGCATTAGGCGCTATCA+AGG | - | chr7.1:4730027-4730046 | MS.gene07046:CDS | 40.0% | |
| ACAGTTCCAGAACAAGAACA+AGG | + | chr7.1:4727818-4727837 | None:intergenic | 40.0% | |
| ACCAGGAAAATGCTTTCACA+AGG | + | chr7.1:4729322-4729341 | None:intergenic | 40.0% | |
| ATAAGAGAAAGTGAGGTGGA+AGG | - | chr7.1:4728951-4728970 | MS.gene07046:intron | 40.0% | |
| ATGATGAAGCAATGCCCATA+AGG | - | chr7.1:4728648-4728667 | MS.gene07046:intron | 40.0% | |
| CAAAGATGGTGTAACGAGAA+AGG | - | chr7.1:4728002-4728021 | MS.gene07046:intron | 40.0% | |
| GACCAGCTTCAATATCAGTT+GGG | + | chr7.1:4729660-4729679 | None:intergenic | 40.0% | |
| GAGCCATTCTGAATAGCATT+AGG | - | chr7.1:4730016-4730035 | MS.gene07046:CDS | 40.0% | |
| GTTGAATTGTCATTGCCAAC+TGG | - | chr7.1:4729217-4729236 | MS.gene07046:intron | 40.0% | |
| TAATCTTCGGTTCCACTTGT+GGG | + | chr7.1:4729804-4729823 | None:intergenic | 40.0% | |
| TGACCAGCTTCAATATCAGT+TGG | + | chr7.1:4729661-4729680 | None:intergenic | 40.0% | |
| TTCCCAACTGATATTGAAGC+TGG | - | chr7.1:4729655-4729674 | MS.gene07046:intron | 40.0% | |
| ! | AAACGCGGTAAAGTACCTTA+TGG | + | chr7.1:4728666-4728685 | None:intergenic | 40.0% |
| ! | AACGCGGTAAAGTACCTTAT+GGG | + | chr7.1:4728665-4728684 | None:intergenic | 40.0% |
| ! | ACAAGAACAAGGTGCTTCTA+AGG | + | chr7.1:4727807-4727826 | None:intergenic | 40.0% |
| ! | ACATGAAAGCATGGTGTTTG+TGG | + | chr7.1:4729575-4729594 | None:intergenic | 40.0% |
| ! | CATGAAAGCATGGTGTTTGT+GGG | + | chr7.1:4729574-4729593 | None:intergenic | 40.0% |
| !! | ACACGTATTTTGCTGTCGTT+AGG | - | chr7.1:4728224-4728243 | MS.gene07046:intron | 40.0% |
| !! | GTCATTGTTCTAAAGGCTTG+CGG | - | chr7.1:4729955-4729974 | MS.gene07046:CDS | 40.0% |
| !!! | ACCTTGTGAAAGCATTTTCC+TGG | - | chr7.1:4729318-4729337 | MS.gene07046:intron | 40.0% |
| AGTCTTAGCTACACATGGCA+TGG | - | chr7.1:4728744-4728763 | MS.gene07046:CDS | 45.0% | |
| CAATGATCGACAGTGAAACG+CGG | + | chr7.1:4729027-4729046 | None:intergenic | 45.0% | |
| CCATTAGTACGGCTGTATGT+AGG | + | chr7.1:4729909-4729928 | None:intergenic | 45.0% | |
| CCTACATACAGCCGTACTAA+TGG | - | chr7.1:4729906-4729925 | MS.gene07046:intron | 45.0% | |
| GCGCCTAATGCTATTCAGAA+TGG | + | chr7.1:4730022-4730041 | None:intergenic | 45.0% | |
| GGGAGAAAGAGTTATCTGTG+AGG | - | chr7.1:4728201-4728220 | MS.gene07046:intron | 45.0% | |
| GTAATCTTCGGTTCCACTTG+TGG | + | chr7.1:4729805-4729824 | None:intergenic | 45.0% | |
| TTAGTGGTAGAGCTGCATTC+CGG | + | chr7.1:4728999-4729018 | None:intergenic | 45.0% | |
| TTGGGAAAAACCCTAACTGC+AGG | + | chr7.1:4729642-4729661 | None:intergenic | 45.0% | |
| ! | GAAGCACCTTGTTCTTGTTC+TGG | - | chr7.1:4727809-4727828 | MS.gene07046:intron | 45.0% |
| !! | ACAAGGTGCTTCTAAGGCTT+TGG | + | chr7.1:4727801-4727820 | None:intergenic | 45.0% |
| ATGCCAATTGCCCCAACACA+AGG | - | chr7.1:4729241-4729260 | MS.gene07046:intron | 50.0% | |
| CAGAATGGCTCCGATTGTCT+TGG | + | chr7.1:4730007-4730026 | None:intergenic | 50.0% | |
| CGCGATAAGAGAAAGTGAGG+TGG | - | chr7.1:4728947-4728966 | MS.gene07046:intron | 50.0% | |
| CGCGTTTCACTGTCGATCAT+TGG | - | chr7.1:4729025-4729044 | MS.gene07046:intron | 50.0% | |
| CTTAGCTACACATGGCATGG+AGG | - | chr7.1:4728747-4728766 | MS.gene07046:CDS | 50.0% | |
| GTGAAACGCGGTTCTGTTAG+TGG | + | chr7.1:4729015-4729034 | None:intergenic | 50.0% | |
| TAGTGGTAGAGCTGCATTCC+GGG | + | chr7.1:4728998-4729017 | None:intergenic | 50.0% | |
| TGCCAATTGCCCCAACACAA+GGG | - | chr7.1:4729242-4729261 | MS.gene07046:intron | 50.0% | |
| TGGAGGAGGAGCTGTATATC+CGG | + | chr7.1:4728612-4728631 | None:intergenic | 50.0% | |
| ! | CTTCTAGGAGCCCTTGTGTT+GGG | + | chr7.1:4729255-4729274 | None:intergenic | 50.0% |
| ! | TCTTCTAGGAGCCCTTGTGT+TGG | + | chr7.1:4729256-4729275 | None:intergenic | 50.0% |
| ! | TTCTAGGAGCCCTTGTGTTG+GGG | + | chr7.1:4729254-4729273 | None:intergenic | 50.0% |
| !! | TGTTTGGTAGTGCCCACAAG+TGG | - | chr7.1:4729789-4729808 | MS.gene07046:intron | 50.0% |
| AGAGTCGTGACTCGTGTACC+AGG | + | chr7.1:4729339-4729358 | None:intergenic | 55.0% | |
| AGCCCTTGTGTTGGGGCAAT+TGG | + | chr7.1:4729247-4729266 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGTATATCC+GGG | + | chr7.1:4728611-4728630 | None:intergenic | 55.0% | |
| GGGGCAATTGGCATTCCAGT+TGG | + | chr7.1:4729235-4729254 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 4727707 | 4730074 | 4727707 | ID=MS.gene07046 |
| chr7.1 | mRNA | 4727707 | 4730074 | 4727707 | ID=MS.gene07046.t1;Parent=MS.gene07046 |
| chr7.1 | exon | 4729940 | 4730074 | 4729940 | ID=MS.gene07046.t1.exon1;Parent=MS.gene07046.t1 |
| chr7.1 | CDS | 4729940 | 4730074 | 4729940 | ID=cds.MS.gene07046.t1;Parent=MS.gene07046.t1 |
| chr7.1 | exon | 4729729 | 4729800 | 4729729 | ID=MS.gene07046.t1.exon2;Parent=MS.gene07046.t1 |
| chr7.1 | CDS | 4729729 | 4729800 | 4729729 | ID=cds.MS.gene07046.t1;Parent=MS.gene07046.t1 |
| chr7.1 | exon | 4729112 | 4729182 | 4729112 | ID=MS.gene07046.t1.exon3;Parent=MS.gene07046.t1 |
| chr7.1 | CDS | 4729112 | 4729182 | 4729112 | ID=cds.MS.gene07046.t1;Parent=MS.gene07046.t1 |
| chr7.1 | exon | 4728726 | 4728855 | 4728726 | ID=MS.gene07046.t1.exon4;Parent=MS.gene07046.t1 |
| chr7.1 | CDS | 4728726 | 4728855 | 4728726 | ID=cds.MS.gene07046.t1;Parent=MS.gene07046.t1 |
| chr7.1 | exon | 4727939 | 4728019 | 4727939 | ID=MS.gene07046.t1.exon5;Parent=MS.gene07046.t1 |
| chr7.1 | CDS | 4727939 | 4728019 | 4727939 | ID=cds.MS.gene07046.t1;Parent=MS.gene07046.t1 |
| chr7.1 | exon | 4727707 | 4727826 | 4727707 | ID=MS.gene07046.t1.exon6;Parent=MS.gene07046.t1 |
| chr7.1 | CDS | 4727707 | 4727826 | 4727707 | ID=cds.MS.gene07046.t1;Parent=MS.gene07046.t1 |
| Gene Sequence |
| Protein sequence |
