Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07049.t1 | AFK49536.1 | 99 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.50E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07049.t1 | G7KST0 | 99.0 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 1.1e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050409 | MS.gene07049 | 0.938651 | 4.73E-99 | -1.69E-46 |
| MS.gene050410 | MS.gene07049 | 0.88672 | 2.67E-72 | -1.69E-46 |
| MS.gene050412 | MS.gene07049 | 0.942853 | 3.43E-102 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07049.t1 | MTR_7g109460 | 99.010 | 202 | 2 | 0 | 1 | 202 | 1 | 202 | 2.96e-148 | 410 |
| MS.gene07049.t1 | MTR_7g109460 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 4.89e-119 | 335 |
| MS.gene07049.t1 | MTR_1g087150 | 62.376 | 202 | 67 | 2 | 1 | 193 | 1 | 202 | 3.76e-76 | 228 |
| MS.gene07049.t1 | MTR_1g087150 | 61.321 | 212 | 72 | 3 | 1 | 202 | 1 | 212 | 5.42e-76 | 228 |
| MS.gene07049.t1 | MTR_1g108490 | 38.378 | 185 | 104 | 3 | 17 | 194 | 56 | 237 | 2.23e-45 | 151 |
| MS.gene07049.t1 | MTR_1g108490 | 41.935 | 155 | 80 | 3 | 17 | 164 | 56 | 207 | 6.73e-38 | 130 |
| MS.gene07049.t1 | MTR_7g082950 | 36.364 | 187 | 106 | 6 | 19 | 200 | 15 | 193 | 4.95e-36 | 125 |
| MS.gene07049.t1 | MTR_8g467220 | 38.974 | 195 | 106 | 5 | 9 | 194 | 56 | 246 | 5.12e-36 | 127 |
| MS.gene07049.t1 | MTR_5g040650 | 39.153 | 189 | 101 | 6 | 20 | 198 | 70 | 254 | 2.36e-31 | 115 |
| MS.gene07049.t1 | MTR_5g040650 | 37.755 | 196 | 108 | 6 | 9 | 194 | 59 | 250 | 1.51e-30 | 113 |
| MS.gene07049.t1 | MTR_7g082950 | 38.562 | 153 | 83 | 5 | 19 | 166 | 15 | 161 | 3.27e-28 | 104 |
| MS.gene07049.t1 | MTR_7g010610 | 38.318 | 107 | 57 | 4 | 1 | 105 | 16 | 115 | 1.01e-17 | 77.4 |
| MS.gene07049.t1 | MTR_3g053370 | 51.613 | 62 | 6 | 1 | 32 | 93 | 3 | 40 | 3.53e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07049.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 2.75e-60 | 187 |
| MS.gene07049.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 3.58e-60 | 187 |
| MS.gene07049.t1 | AT4G02075 | 50.000 | 194 | 86 | 5 | 1 | 192 | 1 | 185 | 2.32e-54 | 172 |
| MS.gene07049.t1 | AT4G02075 | 49.485 | 194 | 87 | 5 | 1 | 192 | 1 | 185 | 3.69e-54 | 171 |
| MS.gene07049.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.58e-44 | 149 |
| MS.gene07049.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.58e-44 | 149 |
| MS.gene07049.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene07049.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene07049.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.70e-44 | 148 |
| MS.gene07049.t1 | AT4G02075 | 49.704 | 169 | 74 | 5 | 1 | 167 | 1 | 160 | 7.61e-44 | 144 |
| MS.gene07049.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07049.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07049.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07049.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07049.t1 | AT2G02960 | 41.304 | 184 | 95 | 5 | 20 | 194 | 43 | 222 | 3.36e-33 | 120 |
| MS.gene07049.t1 | AT5G38070 | 36.612 | 183 | 93 | 5 | 15 | 186 | 49 | 219 | 1.94e-32 | 117 |
| MS.gene07049.t1 | AT3G47550 | 38.983 | 177 | 93 | 4 | 20 | 186 | 69 | 240 | 3.11e-30 | 112 |
| MS.gene07049.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 3.50e-30 | 112 |
| MS.gene07049.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 3.50e-30 | 112 |
| MS.gene07049.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 4.00e-28 | 107 |
| MS.gene07049.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 4.00e-28 | 107 |
| MS.gene07049.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 91 | 271 | 5.55e-28 | 107 |
| MS.gene07049.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene07049.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene07049.t1 | AT1G14260 | 35.204 | 196 | 111 | 5 | 18 | 202 | 55 | 245 | 5.81e-27 | 103 |
| MS.gene07049.t1 | AT2G02960 | 43.066 | 137 | 68 | 3 | 20 | 149 | 43 | 176 | 3.02e-26 | 102 |
| MS.gene07049.t1 | AT3G47550 | 42.623 | 122 | 56 | 3 | 20 | 132 | 69 | 185 | 2.48e-23 | 93.6 |
| MS.gene07049.t1 | AT1G02610 | 37.984 | 129 | 73 | 4 | 70 | 194 | 2 | 127 | 9.39e-20 | 82.0 |
Find 40 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTAATCGATGATTTA+AGG | 0.215992 | 7.1:+4742076 | MS.gene07049:CDS |
| CTTACGGTAAGAAGTGTAAA+TGG | 0.234459 | 7.1:-4744181 | None:intergenic |
| GAAGCACCTTGTTCTTGTTC+TGG | 0.299149 | 7.1:+4742165 | MS.gene07049:CDS |
| CGCGTTTCACTGTCGATCAT+TGG | 0.320595 | 7.1:+4743381 | MS.gene07049:CDS |
| ACAAGAACAAGGTGCTTCTA+AGG | 0.336965 | 7.1:-4742160 | None:intergenic |
| ACAAGGTGCTTCTAAGGCTT+TGG | 0.357018 | 7.1:-4742154 | None:intergenic |
| GTTGTAGGTCATTGTTCTAA+AGG | 0.358971 | 7.1:+4744304 | MS.gene07049:intron |
| AGCTTTCAAACTCTTCTTCA+TGG | 0.379338 | 7.1:-4742131 | None:intergenic |
| TTCTTGTTCTGGAACTGTTA+AGG | 0.379888 | 7.1:+4742176 | MS.gene07049:CDS |
| TAGTGGTAGAGCTGCATTCC+GGG | 0.387977 | 7.1:-4743351 | None:intergenic |
| TTAGTGGTAGAGCTGCATTC+CGG | 0.388354 | 7.1:-4743352 | None:intergenic |
| TGGAGGAGGAGCTGTATATC+CGG | 0.422547 | 7.1:-4742965 | None:intergenic |
| GTTACTAGTAAGACATTGTT+TGG | 0.431240 | 7.1:+4744129 | MS.gene07049:CDS |
| AACGCGGTAAAGTACCTTAT+GGG | 0.451704 | 7.1:-4743018 | None:intergenic |
| TAATCTTCGGTTCCACTTGT+GGG | 0.462880 | 7.1:-4744157 | None:intergenic |
| ATGATGAAGCAATGCCCATA+AGG | 0.464358 | 7.1:+4743004 | MS.gene07049:CDS |
| GTGAAACGCGGTTCTGTTAG+TGG | 0.469197 | 7.1:-4743368 | None:intergenic |
| GAGCCATTCTGAATAGCATT+AGG | 0.470162 | 7.1:+4744372 | MS.gene07049:CDS |
| GTAATCTTCGGTTCCACTTG+TGG | 0.490070 | 7.1:-4744158 | None:intergenic |
| CAGAATGGCTCCGATTGTCT+TGG | 0.492886 | 7.1:-4744360 | None:intergenic |
| TACATAGTTACCAAGACAAT+CGG | 0.492892 | 7.1:+4744350 | MS.gene07049:CDS |
| AATAGCATTAGGCGCTATCA+AGG | 0.494672 | 7.1:+4744383 | MS.gene07049:CDS |
| TGTCTTGGTAACTATGTACA+TGG | 0.500550 | 7.1:-4744345 | None:intergenic |
| AAGTGTAAATGGGTAATCTT+CGG | 0.501901 | 7.1:-4744170 | None:intergenic |
| CAAAGATGGTGTAACGAGAA+AGG | 0.507130 | 7.1:+4742358 | MS.gene07049:CDS |
| GATGATTTAAGGTTACTCTC+TGG | 0.510571 | 7.1:+4742087 | MS.gene07049:CDS |
| GGAGGAGGAGCTGTATATCC+GGG | 0.519973 | 7.1:-4742964 | None:intergenic |
| TTACGGTAAGAAGTGTAAAT+GGG | 0.521582 | 7.1:-4744180 | None:intergenic |
| ATAGAGATTGCATACAAAGA+TGG | 0.547272 | 7.1:+4742344 | MS.gene07049:CDS |
| AACATGTGAAATATGTCTCC+AGG | 0.548388 | 7.1:+4742387 | MS.gene07049:CDS |
| GTCATTGTTCTAAAGGCTTG+CGG | 0.555397 | 7.1:+4744311 | MS.gene07049:CDS |
| GCGCCTAATGCTATTCAGAA+TGG | 0.556703 | 7.1:-4744375 | None:intergenic |
| TGTAATAGAAAGTGATTACC+CGG | 0.600485 | 7.1:+4743333 | MS.gene07049:CDS |
| TGTTTGGTAGTGCCCACAAG+TGG | 0.604389 | 7.1:+4744145 | MS.gene07049:CDS |
| ATAAGAGAAAGTGAGGTGGA+AGG | 0.645126 | 7.1:+4743307 | MS.gene07049:CDS |
| AAACGCGATAAGAGAAAGTG+AGG | 0.650705 | 7.1:+4743300 | MS.gene07049:CDS |
| CGCGATAAGAGAAAGTGAGG+TGG | 0.650995 | 7.1:+4743303 | MS.gene07049:CDS |
| GTCTTGGTAACTATGTACAT+GGG | 0.665639 | 7.1:-4744344 | None:intergenic |
| CAATGATCGACAGTGAAACG+CGG | 0.703113 | 7.1:-4743380 | None:intergenic |
| ACAGTTCCAGAACAAGAACA+AGG | 0.719305 | 7.1:-4742171 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAACACATTTAAT+TGG | + | chr7.1:4743207-4743226 | MS.gene07049:intron | 10.0% |
| !! | TTTCATTCAAAATTAAAATA+CGG | - | chr7.1:4744220-4744239 | None:intergenic | 10.0% |
| !! | AATAGAAAGAAAAAATAAAG+AGG | + | chr7.1:4742536-4742555 | MS.gene07049:intron | 15.0% |
| !! | ATAGAAAGAAAAAATAAAGA+GGG | + | chr7.1:4742537-4742556 | MS.gene07049:intron | 15.0% |
| !! | ATATAAGTCAAAATTAGATT+GGG | - | chr7.1:4742637-4742656 | None:intergenic | 15.0% |
| !! | CTACAAATTATAATATCAAA+TGG | - | chr7.1:4742809-4742828 | None:intergenic | 15.0% |
| !! | TATATAAGTCAAAATTAGAT+TGG | - | chr7.1:4742638-4742657 | None:intergenic | 15.0% |
| !!! | AAAAACTGTAAGTTATTTTT+CGG | - | chr7.1:4744089-4744108 | None:intergenic | 15.0% |
| !!! | AAATTTGATAACACATTTTA+AGG | + | chr7.1:4743260-4743279 | MS.gene07049:intron | 15.0% |
| !!! | AATTTGATAACACATTTTAA+GGG | + | chr7.1:4743261-4743280 | MS.gene07049:intron | 15.0% |
| !!! | CATTTGATATTATAATTTGT+AGG | + | chr7.1:4742807-4742826 | MS.gene07049:intron | 15.0% |
| !!! | GTATTTTAATTTTGAATGAA+AGG | + | chr7.1:4744219-4744238 | MS.gene07049:intron | 15.0% |
| !! | AAATAAAGTTGCATGAATTT+AGG | + | chr7.1:4743525-4743544 | MS.gene07049:intron | 20.0% |
| !! | AATAAAGTTGCATGAATTTA+GGG | + | chr7.1:4743526-4743545 | MS.gene07049:intron | 20.0% |
| !! | GCATGATAAATATAAAAGAT+GGG | + | chr7.1:4742891-4742910 | MS.gene07049:intron | 20.0% |
| !! | TGCATGATAAATATAAAAGA+TGG | + | chr7.1:4742890-4742909 | MS.gene07049:intron | 20.0% |
| !!! | ATTTGATAACACATTTTAAG+GGG | + | chr7.1:4743262-4743281 | MS.gene07049:intron | 20.0% |
| !!! | TATAATTTGTAGGAATTATC+AGG | + | chr7.1:4742817-4742836 | MS.gene07049:intron | 20.0% |
| !!! | TCATTTATCTCTGATTTTTT+TGG | - | chr7.1:4742988-4743007 | None:intergenic | 20.0% |
| !!! | TTTGTTATATAAACTCTTCT+AGG | - | chr7.1:4743626-4743645 | None:intergenic | 20.0% |
| ! | AATTATGTTGTGACGTAAAT+TGG | + | chr7.1:4742603-4742622 | MS.gene07049:intron | 25.0% |
| ! | GAAATGAAGATAGAACTAAA+GGG | - | chr7.1:4742787-4742806 | None:intergenic | 25.0% |
| ! | TGTTACTAATCGATGATTTA+AGG | + | chr7.1:4742076-4742095 | MS.gene07049:CDS | 25.0% |
| ! | TTAAATTTCTCAGCTAATCA+TGG | + | chr7.1:4742761-4742780 | MS.gene07049:intron | 25.0% |
| ! | TTATGTTCATTGTATGCATA+AGG | - | chr7.1:4742853-4742872 | None:intergenic | 25.0% |
| ! | TTCATAAAATGCCATTAGTA+CGG | - | chr7.1:4744276-4744295 | None:intergenic | 25.0% |
| !! | ACGATTACTTTCAAACTTTT+AGG | + | chr7.1:4743825-4743844 | MS.gene07049:intron | 25.0% |
| !! | AGAAAACAATACACGTTTTT+GGG | - | chr7.1:4743718-4743737 | None:intergenic | 25.0% |
| !! | TAATGCTATGCTATTTGATT+AGG | - | chr7.1:4743465-4743484 | None:intergenic | 25.0% |
| !! | TAGAAAACAATACACGTTTT+TGG | - | chr7.1:4743719-4743738 | None:intergenic | 25.0% |
| !! | TTTAATTTAACCTGCAGTTA+GGG | + | chr7.1:4743985-4744004 | MS.gene07049:intron | 25.0% |
| !!! | CTTTTTGATTGAATTAAACG+CGG | - | chr7.1:4743037-4743056 | None:intergenic | 25.0% |
| !!! | TTATGAACTACTTTTGTTGT+AGG | + | chr7.1:4744289-4744308 | MS.gene07049:intron | 25.0% |
| !!! | TTTATCTCTGATTTTTTTGG+AGG | - | chr7.1:4742985-4743004 | None:intergenic | 25.0% |
| !!! | TTTGATAACACATTTTAAGG+GGG | + | chr7.1:4743263-4743282 | MS.gene07049:intron | 25.0% |
| !!! | TTTTTTTAGACATGAAAGCA+TGG | - | chr7.1:4743940-4743959 | None:intergenic | 25.0% |
| AAGTGTAAATGGGTAATCTT+CGG | - | chr7.1:4744173-4744192 | None:intergenic | 30.0% | |
| ATAGAGATTGCATACAAAGA+TGG | + | chr7.1:4742344-4742363 | MS.gene07049:CDS | 30.0% | |
| GGAAATGAAGATAGAACTAA+AGG | - | chr7.1:4742788-4742807 | None:intergenic | 30.0% | |
| GTTACTAGTAAGACATTGTT+TGG | + | chr7.1:4744129-4744148 | MS.gene07049:CDS | 30.0% | |
| TACATAGTTACCAAGACAAT+CGG | + | chr7.1:4744350-4744369 | MS.gene07049:CDS | 30.0% | |
| TATTAAGTCTTAGCTACACA+TGG | + | chr7.1:4743095-4743114 | MS.gene07049:intron | 30.0% | |
| TGTAATAGAAAGTGATTACC+CGG | + | chr7.1:4743333-4743352 | MS.gene07049:CDS | 30.0% | |
| ! | CTTTAATTTAACCTGCAGTT+AGG | + | chr7.1:4743984-4744003 | MS.gene07049:intron | 30.0% |
| ! | TTACGGTAAGAAGTGTAAAT+GGG | - | chr7.1:4744183-4744202 | None:intergenic | 30.0% |
| !! | TCAAACTTTTAGGTCACATT+TGG | + | chr7.1:4743835-4743854 | MS.gene07049:intron | 30.0% |
| !! | TTGATAACACATTTTAAGGG+GGG | + | chr7.1:4743264-4743283 | MS.gene07049:intron | 30.0% |
| AACATGTGAAATATGTCTCC+AGG | + | chr7.1:4742387-4742406 | MS.gene07049:CDS | 35.0% | |
| AGCTTTCAAACTCTTCTTCA+TGG | - | chr7.1:4742134-4742153 | None:intergenic | 35.0% | |
| ATGTTGTGACGTAAATTGGA+TGG | + | chr7.1:4742607-4742626 | MS.gene07049:intron | 35.0% | |
| CATGCAATGATGTATTCTGT+AGG | + | chr7.1:4744059-4744078 | MS.gene07049:intron | 35.0% | |
| CGGAAATCAAGTACTACTTA+CGG | - | chr7.1:4744200-4744219 | None:intergenic | 35.0% | |
| GAACTACTAGAGTACATAGT+CGG | - | chr7.1:4743888-4743907 | None:intergenic | 35.0% | |
| GAAGCTGGTCAAATTAAAAC+TGG | + | chr7.1:4744026-4744045 | MS.gene07049:intron | 35.0% | |
| GTTGTAGGTCATTGTTCTAA+AGG | + | chr7.1:4744304-4744323 | MS.gene07049:intron | 35.0% | |
| TAATCATCATCACACATACC+TGG | - | chr7.1:4742408-4742427 | None:intergenic | 35.0% | |
| TAGGGAAAATAACGAGTCAA+GGG | + | chr7.1:4743544-4743563 | MS.gene07049:intron | 35.0% | |
| TGTTGTGACGTAAATTGGAT+GGG | + | chr7.1:4742608-4742627 | MS.gene07049:intron | 35.0% | |
| TTAGGGAAAATAACGAGTCA+AGG | + | chr7.1:4743543-4743562 | MS.gene07049:intron | 35.0% | |
| ! | CTTACGGTAAGAAGTGTAAA+TGG | - | chr7.1:4744184-4744203 | None:intergenic | 35.0% |
| ! | GATGATTTAAGGTTACTCTC+TGG | + | chr7.1:4742087-4742106 | MS.gene07049:CDS | 35.0% |
| ! | GGTGCAACTATTTTATACGT+TGG | + | chr7.1:4743124-4743143 | MS.gene07049:intron | 35.0% |
| ! | GTCTTGGTAACTATGTACAT+GGG | - | chr7.1:4744347-4744366 | None:intergenic | 35.0% |
| ! | TGTCTTGGTAACTATGTACA+TGG | - | chr7.1:4744348-4744367 | None:intergenic | 35.0% |
| ! | TTTTTGCAGCAATATGAACC+CGG | + | chr7.1:4742946-4742965 | MS.gene07049:intron | 35.0% |
| !! | TTCTTGTTCTGGAACTGTTA+AGG | + | chr7.1:4742176-4742195 | MS.gene07049:CDS | 35.0% |
| !!! | ATCTCTGATTTTTTTGGAGG+AGG | - | chr7.1:4742982-4743001 | None:intergenic | 35.0% |
| AAACGCGATAAGAGAAAGTG+AGG | + | chr7.1:4743300-4743319 | MS.gene07049:CDS | 40.0% | |
| AATAGCATTAGGCGCTATCA+AGG | + | chr7.1:4744383-4744402 | MS.gene07049:CDS | 40.0% | |
| ACAGTTCCAGAACAAGAACA+AGG | - | chr7.1:4742174-4742193 | None:intergenic | 40.0% | |
| ACCAGGAAAATGCTTTCACA+AGG | - | chr7.1:4743678-4743697 | None:intergenic | 40.0% | |
| ATAAGAGAAAGTGAGGTGGA+AGG | + | chr7.1:4743307-4743326 | MS.gene07049:CDS | 40.0% | |
| ATGATGAAGCAATGCCCATA+AGG | + | chr7.1:4743004-4743023 | MS.gene07049:CDS | 40.0% | |
| CAAAGATGGTGTAACGAGAA+AGG | + | chr7.1:4742358-4742377 | MS.gene07049:CDS | 40.0% | |
| GACCAGCTTCAATATCAGTT+GGG | - | chr7.1:4744016-4744035 | None:intergenic | 40.0% | |
| GAGCCATTCTGAATAGCATT+AGG | + | chr7.1:4744372-4744391 | MS.gene07049:CDS | 40.0% | |
| GTTGAATTGTCATTGCCAAC+TGG | + | chr7.1:4743573-4743592 | MS.gene07049:intron | 40.0% | |
| TAATCTTCGGTTCCACTTGT+GGG | - | chr7.1:4744160-4744179 | None:intergenic | 40.0% | |
| TGACCAGCTTCAATATCAGT+TGG | - | chr7.1:4744017-4744036 | None:intergenic | 40.0% | |
| TTCCCAACTGATATTGAAGC+TGG | + | chr7.1:4744011-4744030 | MS.gene07049:intron | 40.0% | |
| ! | AAACGCGGTAAAGTACCTTA+TGG | - | chr7.1:4743022-4743041 | None:intergenic | 40.0% |
| ! | AACGCGGTAAAGTACCTTAT+GGG | - | chr7.1:4743021-4743040 | None:intergenic | 40.0% |
| ! | ACAAGAACAAGGTGCTTCTA+AGG | - | chr7.1:4742163-4742182 | None:intergenic | 40.0% |
| ! | ACATGAAAGCATGGTGTTTG+TGG | - | chr7.1:4743931-4743950 | None:intergenic | 40.0% |
| ! | CATGAAAGCATGGTGTTTGT+GGG | - | chr7.1:4743930-4743949 | None:intergenic | 40.0% |
| !! | ACACGTATTTTGCTGTCGTT+AGG | + | chr7.1:4742580-4742599 | MS.gene07049:intron | 40.0% |
| !! | GTCATTGTTCTAAAGGCTTG+CGG | + | chr7.1:4744311-4744330 | MS.gene07049:CDS | 40.0% |
| !!! | ACCTTGTGAAAGCATTTTCC+TGG | + | chr7.1:4743674-4743693 | MS.gene07049:intron | 40.0% |
| AGTCTTAGCTACACATGGCA+TGG | + | chr7.1:4743100-4743119 | MS.gene07049:intron | 45.0% | |
| CAATGATCGACAGTGAAACG+CGG | - | chr7.1:4743383-4743402 | None:intergenic | 45.0% | |
| CCATTAGTACGGCTGTATGT+AGG | - | chr7.1:4744265-4744284 | None:intergenic | 45.0% | |
| CCTACATACAGCCGTACTAA+TGG | + | chr7.1:4744262-4744281 | MS.gene07049:intron | 45.0% | |
| GCGCCTAATGCTATTCAGAA+TGG | - | chr7.1:4744378-4744397 | None:intergenic | 45.0% | |
| GGGAGAAAGAGTTATCTGTG+AGG | + | chr7.1:4742557-4742576 | MS.gene07049:intron | 45.0% | |
| GTAATCTTCGGTTCCACTTG+TGG | - | chr7.1:4744161-4744180 | None:intergenic | 45.0% | |
| TTAGTGGTAGAGCTGCATTC+CGG | - | chr7.1:4743355-4743374 | None:intergenic | 45.0% | |
| TTGGGAAAAACCCTAACTGC+AGG | - | chr7.1:4743998-4744017 | None:intergenic | 45.0% | |
| ! | GAAGCACCTTGTTCTTGTTC+TGG | + | chr7.1:4742165-4742184 | MS.gene07049:CDS | 45.0% |
| !! | ACAAGGTGCTTCTAAGGCTT+TGG | - | chr7.1:4742157-4742176 | None:intergenic | 45.0% |
| ATGCCAATTGCCCCAACACA+AGG | + | chr7.1:4743597-4743616 | MS.gene07049:intron | 50.0% | |
| CAGAATGGCTCCGATTGTCT+TGG | - | chr7.1:4744363-4744382 | None:intergenic | 50.0% | |
| CGCGATAAGAGAAAGTGAGG+TGG | + | chr7.1:4743303-4743322 | MS.gene07049:CDS | 50.0% | |
| CGCGTTTCACTGTCGATCAT+TGG | + | chr7.1:4743381-4743400 | MS.gene07049:CDS | 50.0% | |
| CTTAGCTACACATGGCATGG+AGG | + | chr7.1:4743103-4743122 | MS.gene07049:intron | 50.0% | |
| GTGAAACGCGGTTCTGTTAG+TGG | - | chr7.1:4743371-4743390 | None:intergenic | 50.0% | |
| TAGTGGTAGAGCTGCATTCC+GGG | - | chr7.1:4743354-4743373 | None:intergenic | 50.0% | |
| TGCCAATTGCCCCAACACAA+GGG | + | chr7.1:4743598-4743617 | MS.gene07049:intron | 50.0% | |
| TGGAGGAGGAGCTGTATATC+CGG | - | chr7.1:4742968-4742987 | None:intergenic | 50.0% | |
| ! | CTTCTAGGAGCCCTTGTGTT+GGG | - | chr7.1:4743611-4743630 | None:intergenic | 50.0% |
| ! | TCTTCTAGGAGCCCTTGTGT+TGG | - | chr7.1:4743612-4743631 | None:intergenic | 50.0% |
| ! | TTCTAGGAGCCCTTGTGTTG+GGG | - | chr7.1:4743610-4743629 | None:intergenic | 50.0% |
| !! | TGTTTGGTAGTGCCCACAAG+TGG | + | chr7.1:4744145-4744164 | MS.gene07049:CDS | 50.0% |
| AGAGTCGTGACTCGTGTACC+AGG | - | chr7.1:4743695-4743714 | None:intergenic | 55.0% | |
| AGCCCTTGTGTTGGGGCAAT+TGG | - | chr7.1:4743603-4743622 | None:intergenic | 55.0% | |
| GGAGGAGGAGCTGTATATCC+GGG | - | chr7.1:4742967-4742986 | None:intergenic | 55.0% | |
| GGGGCAATTGGCATTCCAGT+TGG | - | chr7.1:4743591-4743610 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 4742063 | 4744430 | 4742063 | ID=MS.gene07049 |
| chr7.1 | mRNA | 4742063 | 4744430 | 4742063 | ID=MS.gene07049.t1;Parent=MS.gene07049 |
| chr7.1 | exon | 4742063 | 4742197 | 4742063 | ID=MS.gene07049.t1.exon1;Parent=MS.gene07049.t1 |
| chr7.1 | CDS | 4742063 | 4742197 | 4742063 | ID=cds.MS.gene07049.t1;Parent=MS.gene07049.t1 |
| chr7.1 | exon | 4742337 | 4742408 | 4742337 | ID=MS.gene07049.t1.exon2;Parent=MS.gene07049.t1 |
| chr7.1 | CDS | 4742337 | 4742408 | 4742337 | ID=cds.MS.gene07049.t1;Parent=MS.gene07049.t1 |
| chr7.1 | exon | 4742955 | 4743025 | 4742955 | ID=MS.gene07049.t1.exon3;Parent=MS.gene07049.t1 |
| chr7.1 | CDS | 4742955 | 4743025 | 4742955 | ID=cds.MS.gene07049.t1;Parent=MS.gene07049.t1 |
| chr7.1 | exon | 4743282 | 4743411 | 4743282 | ID=MS.gene07049.t1.exon4;Parent=MS.gene07049.t1 |
| chr7.1 | CDS | 4743282 | 4743411 | 4743282 | ID=cds.MS.gene07049.t1;Parent=MS.gene07049.t1 |
| chr7.1 | exon | 4744118 | 4744198 | 4744118 | ID=MS.gene07049.t1.exon5;Parent=MS.gene07049.t1 |
| chr7.1 | CDS | 4744118 | 4744198 | 4744118 | ID=cds.MS.gene07049.t1;Parent=MS.gene07049.t1 |
| chr7.1 | exon | 4744311 | 4744430 | 4744311 | ID=MS.gene07049.t1.exon6;Parent=MS.gene07049.t1 |
| chr7.1 | CDS | 4744311 | 4744430 | 4744311 | ID=cds.MS.gene07049.t1;Parent=MS.gene07049.t1 |
| Gene Sequence |
| Protein sequence |
