AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070610.t1 MTR_8g464350 93.307 254 17 0 1 254 1 254 0.0 508
MS.gene070610.t1 MTR_8g058990 81.102 254 47 1 1 254 1 253 5.39e-156 434
MS.gene070610.t1 MTR_7g013140 72.835 254 66 2 1 254 1 251 3.87e-136 383
MS.gene070610.t1 MTR_7g013120 72.157 255 68 3 1 254 1 253 8.15e-134 377
MS.gene070610.t1 MTR_7g013150 69.291 254 77 1 1 254 1 253 7.96e-133 375
MS.gene070610.t1 MTR_7g061720 57.895 247 98 3 7 248 6 251 2.54e-99 290
MS.gene070610.t1 MTR_5g079950 57.676 241 97 2 13 248 12 252 2.47e-98 288
MS.gene070610.t1 MTR_2g097030 60.455 220 85 1 31 248 34 253 1.17e-96 284
MS.gene070610.t1 MTR_3g435430 59.641 223 86 2 28 248 22 242 9.27e-94 276
MS.gene070610.t1 MTR_4g063975 56.680 247 102 2 7 248 5 251 9.34e-93 274
MS.gene070610.t1 MTR_3g094060 58.636 220 87 2 31 248 31 248 3.38e-92 272
MS.gene070610.t1 MTR_3g094040 58.636 220 87 2 31 248 31 248 5.12e-92 271
MS.gene070610.t1 MTR_5g041700 54.918 244 106 2 10 251 4 245 1.28e-91 270
MS.gene070610.t1 MTR_5g075320 53.785 251 109 4 4 251 3 249 1.54e-91 270
MS.gene070610.t1 MTR_4g081950 57.399 223 91 2 31 251 61 281 2.29e-89 266
MS.gene070610.t1 MTR_1g026020 55.217 230 98 3 29 254 27 255 4.13e-87 259
MS.gene070610.t1 MTR_7g011060 57.727 220 85 2 29 248 24 235 5.58e-87 258
MS.gene070610.t1 MTR_5g011210 50.391 256 122 4 3 254 8 262 1.01e-86 258
MS.gene070610.t1 MTR_3g466760 53.441 247 110 3 8 251 14 258 1.42e-86 258
MS.gene070610.t1 MTR_3g466790 57.399 223 91 2 31 251 32 252 6.66e-86 256
MS.gene070610.t1 MTR_0008s0120 54.118 255 60 6 1 254 1 199 5.08e-83 247
MS.gene070610.t1 MTR_4g124340 52.489 221 100 3 31 248 61 279 9.99e-83 249
MS.gene070610.t1 MTR_1g085460 51.020 245 111 5 15 254 17 257 2.92e-82 247
MS.gene070610.t1 MTR_4g102450 52.838 229 104 3 29 254 34 261 1.68e-81 245
MS.gene070610.t1 MTR_7g111010 52.402 229 103 4 31 254 27 254 2.32e-81 244
MS.gene070610.t1 MTR_7g110990 52.402 229 103 4 31 254 12 239 2.96e-81 244
MS.gene070610.t1 MTR_5g076950 52.018 223 104 2 29 249 39 260 6.20e-78 236
MS.gene070610.t1 MTR_0040s0140 46.964 247 126 2 8 249 6 252 1.66e-77 235
MS.gene070610.t1 MTR_6g012520 57.798 218 84 2 31 248 28 237 7.38e-77 233
MS.gene070610.t1 MTR_2g090255 44.355 248 130 2 10 249 1 248 7.19e-75 228
MS.gene070610.t1 MTR_3g064510 47.639 233 107 6 29 249 51 280 1.61e-70 218
MS.gene070610.t1 MTR_2g090270 31.538 260 154 8 7 254 11 258 1.77e-29 112
MS.gene070610.t1 MTR_2g090265 30.534 262 152 10 7 254 11 256 1.40e-26 104
MS.gene070610.t1 MTR_0122s0020 30.385 260 155 7 8 254 18 264 1.97e-25 101
MS.gene070610.t1 MTR_6g012500 48.421 95 49 0 154 248 181 275 7.76e-24 97.4
MS.gene070610.t1 MTR_4g028640 29.811 265 148 12 5 254 23 264 1.05e-22 94.0
MS.gene070610.t1 MTR_0809s0010 28.452 239 141 9 31 254 47 270 2.72e-20 87.8
MS.gene070610.t1 MTR_0118s0070 28.085 235 141 9 36 254 53 275 4.07e-19 84.3
MS.gene070610.t1 MTR_4g075790 29.098 244 142 8 21 250 13 239 1.08e-17 80.5
MS.gene070610.t1 MTR_0122s0020 30.964 197 111 6 8 192 18 201 1.45e-17 79.0
MS.gene070610.t1 MTR_4g099370 28.000 225 147 9 33 250 30 246 5.34e-17 78.2
MS.gene070610.t1 MTR_5g013440 26.638 229 151 10 34 254 32 251 4.06e-16 75.9
MS.gene070610.t1 MTR_4g098930 26.538 260 159 11 7 250 5 248 5.75e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070610.t1 AT5G39280 62.500 240 88 1 15 254 38 275 5.33e-114 328
MS.gene070610.t1 AT5G39300 64.348 230 80 1 25 254 49 276 2.25e-112 324
MS.gene070610.t1 AT5G39270 64.035 228 80 1 27 254 54 279 1.75e-107 312
MS.gene070610.t1 AT5G39290 63.158 228 82 1 27 254 54 279 3.81e-106 308
MS.gene070610.t1 AT5G02260 61.504 226 84 2 31 254 32 256 1.66e-101 296
MS.gene070610.t1 AT2G39700 58.537 246 97 2 8 248 5 250 5.39e-101 295
MS.gene070610.t1 AT5G39310 60.793 227 86 2 29 254 88 312 5.54e-100 294
MS.gene070610.t1 AT3G55500 58.197 244 99 2 7 248 11 253 1.62e-99 291
MS.gene070610.t1 AT2G37640 57.600 250 100 3 10 254 12 260 1.65e-99 291
MS.gene070610.t1 AT5G56320 58.744 223 88 2 28 248 26 246 3.24e-94 277
MS.gene070610.t1 AT5G56320 58.744 223 88 2 28 248 26 246 3.24e-94 277
MS.gene070610.t1 AT5G56320 58.744 223 88 2 28 248 26 246 2.06e-93 277
MS.gene070610.t1 AT2G28950 59.091 220 88 1 31 248 31 250 7.79e-92 271
MS.gene070610.t1 AT2G37640 61.321 212 79 2 45 254 25 235 1.36e-91 270
MS.gene070610.t1 AT1G69530 53.226 248 112 2 7 252 3 248 1.83e-91 271
MS.gene070610.t1 AT1G69530 53.036 247 112 2 7 251 3 247 2.39e-91 270
MS.gene070610.t1 AT1G69530 53.036 247 112 2 7 251 3 247 2.39e-91 270
MS.gene070610.t1 AT2G40610 54.733 243 102 4 10 249 12 249 4.97e-91 269
MS.gene070610.t1 AT5G05290 58.559 222 87 3 31 249 32 251 1.99e-90 268
MS.gene070610.t1 AT3G29030 60.092 218 80 2 31 248 38 248 2.59e-90 268
MS.gene070610.t1 AT2G03090 55.462 238 100 3 15 248 12 247 1.40e-89 266
MS.gene070610.t1 AT5G39260 53.782 238 102 3 18 254 32 262 5.14e-86 257
MS.gene070610.t1 AT1G12560 50.598 251 114 5 12 254 13 261 1.19e-84 253
MS.gene070610.t1 AT1G62980 52.863 227 103 3 31 254 31 256 7.41e-83 249
MS.gene070610.t1 AT4G01630 48.649 259 124 5 1 254 1 255 8.07e-82 246
MS.gene070610.t1 AT1G26770 55.909 220 93 2 31 248 26 243 6.28e-81 243
MS.gene070610.t1 AT1G26770 55.909 220 93 2 31 248 36 253 8.21e-81 243
MS.gene070610.t1 AT1G20190 51.327 226 105 3 33 254 28 252 1.58e-79 240
MS.gene070610.t1 AT1G69530 54.589 207 90 2 7 211 3 207 1.18e-78 236
MS.gene070610.t1 AT1G69530 54.589 207 90 2 7 211 3 207 1.22e-78 238
MS.gene070610.t1 AT3G03220 51.351 222 105 2 30 249 39 259 8.62e-78 236
MS.gene070610.t1 AT4G38210 43.802 242 128 3 12 249 13 250 5.17e-70 216
MS.gene070610.t1 AT1G20190 50.777 193 90 3 66 254 2 193 3.44e-65 201
MS.gene070610.t1 AT3G15370 42.798 243 131 5 12 250 8 246 2.94e-63 198
MS.gene070610.t1 AT3G15370 45.894 207 104 5 48 250 74 276 8.40e-57 183
MS.gene070610.t1 AT1G65680 32.645 242 136 10 28 254 44 273 1.18e-25 102
MS.gene070610.t1 AT2G20750 31.381 239 142 9 29 254 38 267 1.32e-23 96.7
MS.gene070610.t1 AT4G28250 31.557 244 142 9 24 254 29 260 1.97e-23 95.9
MS.gene070610.t1 AT1G65681 30.493 223 132 7 44 254 11 222 3.64e-22 91.7
MS.gene070610.t1 AT4G28250 31.120 241 141 8 24 254 29 254 8.96e-22 91.3
MS.gene070610.t1 AT2G45110 28.511 235 143 7 34 254 36 259 5.14e-21 89.4
MS.gene070610.t1 AT3G60570 27.203 261 162 8 7 254 12 257 2.63e-19 84.7
MS.gene070610.t1 AT3G45970 26.577 222 131 7 50 254 15 221 2.78e-15 73.6
MS.gene070610.t1 AT2G20750 30.286 175 102 7 29 192 38 203 5.06e-15 72.4
MS.gene070610.t1 AT4G28250 33.333 138 72 5 24 153 29 154 1.38e-14 70.9
MS.gene070610.t1 AT4G28250 33.333 138 72 5 24 153 29 154 1.76e-14 70.5
MS.gene070610.t1 AT3G60570 26.606 218 134 7 50 254 5 209 2.17e-14 70.5
MS.gene070610.t1 AT4G17030 27.170 265 160 12 1 251 1 246 1.45e-13 68.9
MS.gene070610.t1 AT3G45970 25.688 218 130 7 54 254 46 248 1.20e-12 66.2
MS.gene070610.t1 AT4G38400 25.806 217 130 8 54 254 47 248 4.30e-12 64.7

Find 60 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTCCACTGCTACATAAT+TGG 0.183743 8.1:+49886730 MS.gene070610:CDS
GCTCCTTCCAATTGGCAATT+TGG 0.209639 8.1:+49886849 MS.gene070610:CDS
TAGGACAAGATTTGTCATTT+TGG 0.214033 8.1:+49886784 MS.gene070610:CDS
AATCTATTCCAACAAGGATA+TGG 0.222879 8.1:+49886303 MS.gene070610:CDS
CCATCAGGTTTGTCGTAATT+TGG 0.225959 8.1:-49886471 None:intergenic
GTCTTACTGTTTGCTTCCTT+TGG 0.256256 8.1:+49885228 MS.gene070610:CDS
ACGACAAACCTGATGGAAAT+TGG 0.280254 8.1:+49886478 MS.gene070610:CDS
TTGGCATACGGGAGTTAATT+TGG 0.289467 8.1:+49886761 MS.gene070610:CDS
GACTCCACTGCTACATAATT+GGG 0.326536 8.1:+49886731 MS.gene070610:CDS
GCAATCCCATTGACTCAAAA+TGG 0.326805 8.1:+49885290 MS.gene070610:CDS
TACATAATTGGGGACAAGTT+TGG 0.337815 8.1:+49886742 MS.gene070610:CDS
TTTCTAGCCCATATCCTTGT+TGG 0.337949 8.1:-49886311 None:intergenic
CTTCCGTTGCTCCTTCCAAT+TGG 0.390243 8.1:+49886841 MS.gene070610:CDS
ACCGGACATGTCACCGTAGA+AGG 0.393823 8.1:-49885329 None:intergenic
GGAACACGTCGATATTGAAC+TGG 0.396453 8.1:-49886579 None:intergenic
GATGCCCATGCAACCTTCTA+CGG 0.443217 8.1:+49885316 MS.gene070610:CDS
GACGATCCCTGCTTTGTAAA+CGG 0.444086 8.1:-49886556 None:intergenic
TCAATCAAAGGGTCTAATAC+TGG 0.448813 8.1:+49886705 MS.gene070610:CDS
ATCTATTCCAACAAGGATAT+GGG 0.457023 8.1:+49886304 MS.gene070610:CDS
GGGTTACACCAATTTCCATC+AGG 0.476439 8.1:-49886486 None:intergenic
CATCTTTGATGCACCATTGT+GGG 0.476735 8.1:-49886410 None:intergenic
ACCTTCTACGGTGACATGTC+CGG 0.479848 8.1:+49885328 MS.gene070610:CDS
ACAATTGCCGTTTACAAAGC+AGG 0.492721 8.1:+49886549 MS.gene070610:CDS
TGGGGACAAGTTTGGCATAC+GGG 0.495911 8.1:+49886750 MS.gene070610:CDS
CCAAATTACGACAAACCTGA+TGG 0.508657 8.1:+49886471 MS.gene070610:CDS
CATACGGGAGTTAATTTGGT+AGG 0.509770 8.1:+49886765 MS.gene070610:CDS
CTTACGCATTGTTTCACCAC+CGG 0.520789 8.1:-49885347 None:intergenic
GGTTTGTCCAAATTGCCAAT+TGG 0.522971 8.1:-49886856 None:intergenic
GGAAGCAAACAGTAAGACTT+AGG 0.524182 8.1:-49885223 None:intergenic
GCTCTTCTTGCATGAGGCCA+TGG 0.526471 8.1:+49885264 MS.gene070610:CDS
ATTCTGCGTGTGTCAATCAA+AGG 0.530316 8.1:+49886693 MS.gene070610:CDS
TCAGGTTTGTCGTAATTTGG+TGG 0.534988 8.1:-49886468 None:intergenic
TCAAAGGGTCTAATACTGGT+TGG 0.541495 8.1:+49886709 MS.gene070610:CDS
TTGGGGACAAGTTTGGCATA+CGG 0.541700 8.1:+49886749 MS.gene070610:CDS
TGTCCAAATTGCCAATTGGA+AGG 0.550082 8.1:-49886852 None:intergenic
TACAGCGCTCTTCTTGCATG+AGG 0.555800 8.1:+49885258 MS.gene070610:CDS
CGTGTTCCATGCATCAAAAG+TGG 0.563181 8.1:+49886594 MS.gene070610:CDS
GGTGTTAGATTTGAACTAAG+AGG 0.564416 8.1:+49886618 MS.gene070610:CDS
TTCTGCGTGTGTCAATCAAA+GGG 0.565043 8.1:+49886694 MS.gene070610:CDS
GTCAATGGGATTGCGAGCCA+TGG 0.568122 8.1:-49885281 None:intergenic
GTGTATAATGTTGCCAACGC+TGG 0.571182 8.1:+49886666 MS.gene070610:CDS
ACATCTTTGATGCACCATTG+TGG 0.577686 8.1:-49886411 None:intergenic
CAATTGCCGTTTACAAAGCA+GGG 0.578468 8.1:+49886550 MS.gene070610:CDS
TTGCCAATTGGAAGGAGCAA+CGG 0.586445 8.1:-49886844 None:intergenic
ATGCACCACATCTGTAGCCA+TGG 0.588509 8.1:-49886362 None:intergenic
AAAATTGGCGGAGCTTTCGT+AGG 0.592097 8.1:-49886877 None:intergenic
ACGCAGAATGTCACCAGCGT+TGG 0.594027 8.1:-49886679 None:intergenic
TTCAACCATGGCTACAGATG+TGG 0.594972 8.1:+49886357 MS.gene070610:CDS
TGTCACCGTAGAAGGTTGCA+TGG 0.601270 8.1:-49885321 None:intergenic
GTCACCGTAGAAGGTTGCAT+GGG 0.616077 8.1:-49885320 None:intergenic
TAATGCCGTGCTTAATGCTG+TGG 0.619957 8.1:-49886334 None:intergenic
AGCACGGCATTATTCAACCA+TGG 0.632528 8.1:+49886345 MS.gene070610:CDS
TGTCCCCAATTATGTAGCAG+TGG 0.649411 8.1:-49886735 None:intergenic
ACTCCACTGCTACATAATTG+GGG 0.650498 8.1:+49886732 MS.gene070610:CDS
GAACACGTCGATATTGAACT+GGG 0.652049 8.1:-49886578 None:intergenic
AGAAACCACAGCATTAAGCA+CGG 0.676521 8.1:+49886329 MS.gene070610:CDS
GTTCCATGCATCAAAAGTGG+CGG 0.678655 8.1:+49886597 MS.gene070610:CDS
TTCTACGGTGACATGTCCGG+TGG 0.686557 8.1:+49885331 MS.gene070610:CDS
TATGGCAATCTATTCCAACA+AGG 0.717945 8.1:+49886297 MS.gene070610:CDS
AGTGTGTCAATGACCCACAA+TGG 0.747163 8.1:+49886397 MS.gene070610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAAAAATTACAG+GGG - chr8.1:49885783-49885802 None:intergenic 10.0%
!! TATATACAAAAAACTAATAA+TGG - chr8.1:49886244-49886263 None:intergenic 10.0%
!!! ATAACAAATAAATGTTTTTT+AGG - chr8.1:49886204-49886223 None:intergenic 10.0%
!! ACAACGTATTATTAAATTAA+AGG - chr8.1:49885900-49885919 None:intergenic 15.0%
!! CAACGTATTATTAAATTAAA+GGG - chr8.1:49885899-49885918 None:intergenic 15.0%
!! TTATAATACATAGATCAAAT+TGG + chr8.1:49885497-49885516 MS.gene070610:intron 15.0%
!!! ATTATATACTAGTATTTCTA+AGG - chr8.1:49885696-49885715 None:intergenic 15.0%
!!! GGTATTCTAAAAAAAATTAA+GGG - chr8.1:49885810-49885829 None:intergenic 15.0%
!!! GTATTCTAAAAAAAATTAAG+GGG - chr8.1:49885809-49885828 None:intergenic 15.0%
!!! TATTTAATTTTGGGTTAATA+GGG + chr8.1:49885722-49885741 MS.gene070610:intron 15.0%
!!! TTATTTAATTTTGGGTTAAT+AGG + chr8.1:49885721-49885740 MS.gene070610:intron 15.0%
!!! TTTTTTGAATGAACTATTAA+GGG - chr8.1:49885832-49885851 None:intergenic 15.0%
!! AATAGTTCATTCAAAAAACA+GGG + chr8.1:49885834-49885853 MS.gene070610:intron 20.0%
!! CAAATGGAAAAAGTTATAAA+TGG - chr8.1:49886070-49886089 None:intergenic 20.0%
!! TAAAAAGAAAAATTAGACCA+TGG - chr8.1:49885454-49885473 None:intergenic 20.0%
!! TAATAGTTCATTCAAAAAAC+AGG + chr8.1:49885833-49885852 MS.gene070610:intron 20.0%
!! TAGGAATCAACATTTAATAT+GGG - chr8.1:49886185-49886204 None:intergenic 20.0%
!! TTAGGAATCAACATTTAATA+TGG - chr8.1:49886186-49886205 None:intergenic 20.0%
!!! CAAATGGAAAAAGTTTTAAA+TGG + chr8.1:49886096-49886115 MS.gene070610:intron 20.0%
!!! GGGTATTCTAAAAAAAATTA+AGG - chr8.1:49885811-49885830 None:intergenic 20.0%
!!! GTTTTTTGAATGAACTATTA+AGG - chr8.1:49885833-49885852 None:intergenic 20.0%
!!! TTTTTGAATGAACTATTAAG+GGG - chr8.1:49885831-49885850 None:intergenic 20.0%
! ACCAAAACCATCAAAAAATA+AGG - chr8.1:49886648-49886667 None:intergenic 25.0%
! CCAAAACCATCAAAAAATAA+GGG - chr8.1:49886647-49886666 None:intergenic 25.0%
! TAAATGACCTATATTACAGA+GGG + chr8.1:49885859-49885878 MS.gene070610:intron 25.0%
!! AATATATTGTATTGATGCAG+AGG + chr8.1:49886263-49886282 MS.gene070610:intron 25.0%
!! ATATATTGTATTGATGCAGA+GGG + chr8.1:49886264-49886283 MS.gene070610:intron 25.0%
!!! AGATTTTGAGGTATTCTTTT+CGG + chr8.1:49885556-49885575 MS.gene070610:intron 25.0%
AATCTATTCCAACAAGGATA+TGG + chr8.1:49886303-49886322 MS.gene070610:CDS 30.0%
ATCTATTCCAACAAGGATAT+GGG + chr8.1:49886304-49886323 MS.gene070610:CDS 30.0%
GAAATGACTAAAATTACAGG+AGG - chr8.1:49885753-49885772 None:intergenic 30.0%
GTAAATGACCTATATTACAG+AGG + chr8.1:49885858-49885877 MS.gene070610:intron 30.0%
TATAAATGGAGATCTTAACC+CGG - chr8.1:49886056-49886075 None:intergenic 30.0%
TCTGGTATTCTCATGAAAAT+TGG - chr8.1:49885645-49885664 None:intergenic 30.0%
! AGTATTAGAAGCAGATTTTG+AGG + chr8.1:49885544-49885563 MS.gene070610:intron 30.0%
! TATATTGTATTGATGCAGAG+GGG + chr8.1:49886265-49886284 MS.gene070610:intron 30.0%
! TGTTTTACCCTCTGTAATAT+AGG - chr8.1:49885869-49885888 None:intergenic 30.0%
! TTTCCATTTGTTGCAACAAA+TGG + chr8.1:49886080-49886099 MS.gene070610:intron 30.0%
! TTTCCATTTGTTGCAACAAA+TGG - chr8.1:49886099-49886080 None:intergenic 30.0%
!! AAATCGAAATGTTTTTGAGG+TGG - chr8.1:49886510-49886529 None:intergenic 30.0%
!! CCTGTAATTTTAGTCATTTC+CGG + chr8.1:49885753-49885772 MS.gene070610:intron 30.0%
!! CTCAAATCGAAATGTTTTTG+AGG - chr8.1:49886513-49886532 None:intergenic 30.0%
!! CTGTAATTTTAGTCATTTCC+GGG + chr8.1:49885754-49885773 MS.gene070610:intron 30.0%
!! TAGGACAAGATTTGTCATTT+TGG + chr8.1:49886784-49886803 MS.gene070610:CDS 30.0%
!!! AATCGAAATGTTTTTGAGGT+GGG - chr8.1:49886509-49886528 None:intergenic 30.0%
!!! AGGAAACCCTTATTTTTTGA+TGG + chr8.1:49886638-49886657 MS.gene070610:CDS 30.0%
!!! AGGACAAGATTTGTCATTTT+GGG + chr8.1:49886785-49886804 MS.gene070610:CDS 30.0%
!!! CCCTTATTTTTTGATGGTTT+TGG + chr8.1:49886644-49886663 MS.gene070610:CDS 30.0%
!!! GGAAAAAGTTTTAAATGGAG+AGG + chr8.1:49886101-49886120 MS.gene070610:intron 30.0%
!!! TTTTGAGATCTGGATATATC+TGG - chr8.1:49886134-49886153 None:intergenic 30.0%
AAAAAATTACAGGGGAAACC+CGG - chr8.1:49885775-49885794 None:intergenic 35.0%
ATATATAGTCGTTCTCACCA+TGG + chr8.1:49885434-49885453 MS.gene070610:intron 35.0%
CCGGAAATGACTAAAATTAC+AGG - chr8.1:49885756-49885775 None:intergenic 35.0%
CGGATATATCTCATGAAAAG+CGG - chr8.1:49886036-49886055 None:intergenic 35.0%
GGTGTTAGATTTGAACTAAG+AGG + chr8.1:49886618-49886637 MS.gene070610:CDS 35.0%
TACATAATTGGGGACAAGTT+TGG + chr8.1:49886742-49886761 MS.gene070610:CDS 35.0%
TATGGCAATCTATTCCAACA+AGG + chr8.1:49886297-49886316 MS.gene070610:CDS 35.0%
TCAATCAAAGGGTCTAATAC+TGG + chr8.1:49886705-49886724 MS.gene070610:CDS 35.0%
! ATATTGTATTGATGCAGAGG+GGG + chr8.1:49886266-49886285 MS.gene070610:intron 35.0%
! CGCTTTTCATGAGATATATC+CGG + chr8.1:49886034-49886053 MS.gene070610:intron 35.0%
! GCTTTTCATGAGATATATCC+GGG + chr8.1:49886035-49886054 MS.gene070610:intron 35.0%
!! TTGGTTTGTGAGTGTCAATA+TGG + chr8.1:49885594-49885613 MS.gene070610:intron 35.0%
!!! TAACGTGTGTTTTTGAGATC+TGG - chr8.1:49886144-49886163 None:intergenic 35.0%
!!! TTTTGAGGTATTCTTTTCGG+TGG + chr8.1:49885559-49885578 MS.gene070610:intron 35.0%
ACATCTTTGATGCACCATTG+TGG - chr8.1:49886414-49886433 None:intergenic 40.0%
ACGACAAACCTGATGGAAAT+TGG + chr8.1:49886478-49886497 MS.gene070610:CDS 40.0%
ACTCCACTGCTACATAATTG+GGG + chr8.1:49886732-49886751 MS.gene070610:CDS 40.0%
AGAAACCACAGCATTAAGCA+CGG + chr8.1:49886329-49886348 MS.gene070610:CDS 40.0%
ATTCTGCGTGTGTCAATCAA+AGG + chr8.1:49886693-49886712 MS.gene070610:CDS 40.0%
CATCTTTGATGCACCATTGT+GGG - chr8.1:49886413-49886432 None:intergenic 40.0%
CCAAATTACGACAAACCTGA+TGG + chr8.1:49886471-49886490 MS.gene070610:CDS 40.0%
CCATCAGGTTTGTCGTAATT+TGG - chr8.1:49886474-49886493 None:intergenic 40.0%
GAACACGTCGATATTGAACT+GGG - chr8.1:49886581-49886600 None:intergenic 40.0%
GACTCCACTGCTACATAATT+GGG + chr8.1:49886731-49886750 MS.gene070610:CDS 40.0%
GGAAGCAAACAGTAAGACTT+AGG - chr8.1:49885226-49885245 None:intergenic 40.0%
GGTTTGTCCAAATTGCCAAT+TGG - chr8.1:49886859-49886878 None:intergenic 40.0%
GTCTTACTGTTTGCTTCCTT+TGG + chr8.1:49885228-49885247 MS.gene070610:CDS 40.0%
TAACGTGTGTTTGAGAGATC+TGG - chr8.1:49885663-49885682 None:intergenic 40.0%
TCAAAGGGTCTAATACTGGT+TGG + chr8.1:49886709-49886728 MS.gene070610:CDS 40.0%
TCAGGTTTGTCGTAATTTGG+TGG - chr8.1:49886471-49886490 None:intergenic 40.0%
TGTCCAAATTGCCAATTGGA+AGG - chr8.1:49886855-49886874 None:intergenic 40.0%
TTCTGCGTGTGTCAATCAAA+GGG + chr8.1:49886694-49886713 MS.gene070610:CDS 40.0%
TTGGCATACGGGAGTTAATT+TGG + chr8.1:49886761-49886780 MS.gene070610:CDS 40.0%
! ACAATTGCCGTTTACAAAGC+AGG + chr8.1:49886549-49886568 MS.gene070610:CDS 40.0%
! CAATTGCCGTTTACAAAGCA+GGG + chr8.1:49886550-49886569 MS.gene070610:CDS 40.0%
! CATACGGGAGTTAATTTGGT+AGG + chr8.1:49886765-49886784 MS.gene070610:CDS 40.0%
! TTTCTAGCCCATATCCTTGT+TGG - chr8.1:49886314-49886333 None:intergenic 40.0%
!! CAAGAAGAGCGCTGTAAAAA+AGG - chr8.1:49885254-49885273 None:intergenic 40.0%
!! GCAATCCCATTGACTCAAAA+TGG + chr8.1:49885290-49885309 MS.gene070610:CDS 40.0%
!! GGTATTCTTTTCGGTGGATT+TGG + chr8.1:49885565-49885584 MS.gene070610:intron 40.0%
!! TCGGTGGATTTGGTGAAATT+TGG + chr8.1:49885575-49885594 MS.gene070610:intron 40.0%
!!! ATCGTGCCATTTTGAGTCAA+TGG - chr8.1:49885299-49885318 None:intergenic 40.0%
!!! TCGTGCCATTTTGAGTCAAT+GGG - chr8.1:49885298-49885317 None:intergenic 40.0%
AAAATTGGCGGAGCTTTCGT+AGG - chr8.1:49886880-49886899 None:intergenic 45.0%
AGCACGGCATTATTCAACCA+TGG + chr8.1:49886345-49886364 MS.gene070610:CDS 45.0%
AGCGCTGTAAAAAAGGCCAA+AGG - chr8.1:49885247-49885266 None:intergenic 45.0%
AGTGTGTCAATGACCCACAA+TGG + chr8.1:49886397-49886416 MS.gene070610:CDS 45.0%
CGTGTTCCATGCATCAAAAG+TGG + chr8.1:49886594-49886613 MS.gene070610:CDS 45.0%
CTTACGCATTGTTTCACCAC+CGG - chr8.1:49885350-49885369 None:intergenic 45.0%
GACGATCCCTGCTTTGTAAA+CGG - chr8.1:49886559-49886578 None:intergenic 45.0%
GCTCCTTCCAATTGGCAATT+TGG + chr8.1:49886849-49886868 MS.gene070610:CDS 45.0%
GGAACACGTCGATATTGAAC+TGG - chr8.1:49886582-49886601 None:intergenic 45.0%
GGACTCCACTGCTACATAAT+TGG + chr8.1:49886730-49886749 MS.gene070610:CDS 45.0%
GGGTTACACCAATTTCCATC+AGG - chr8.1:49886489-49886508 None:intergenic 45.0%
GTGTATAATGTTGCCAACGC+TGG + chr8.1:49886666-49886685 MS.gene070610:CDS 45.0%
GTTCCATGCATCAAAAGTGG+CGG + chr8.1:49886597-49886616 MS.gene070610:CDS 45.0%
TAATGCCGTGCTTAATGCTG+TGG - chr8.1:49886337-49886356 None:intergenic 45.0%
TGTCCCCAATTATGTAGCAG+TGG - chr8.1:49886738-49886757 None:intergenic 45.0%
TTCAACCATGGCTACAGATG+TGG + chr8.1:49886357-49886376 MS.gene070610:CDS 45.0%
TTGCCAATTGGAAGGAGCAA+CGG - chr8.1:49886847-49886866 None:intergenic 45.0%
TTGGGGACAAGTTTGGCATA+CGG + chr8.1:49886749-49886768 MS.gene070610:CDS 45.0%
!! AAATAAATAAAAAAATTACA+GGG - chr8.1:49885784-49885803 None:intergenic 5.0%
!! TAAATAAATAAAAAAATTAC+AGG - chr8.1:49885785-49885804 None:intergenic 5.0%
!!! AATAACTATTATTTAATTTT+GGG + chr8.1:49885713-49885732 MS.gene070610:intron 5.0%
!!! TAATAACTATTATTTAATTT+TGG + chr8.1:49885712-49885731 MS.gene070610:intron 5.0%
ACCTTCTACGGTGACATGTC+CGG + chr8.1:49885328-49885347 MS.gene070610:CDS 50.0%
ATGCACCACATCTGTAGCCA+TGG - chr8.1:49886365-49886384 None:intergenic 50.0%
CTTCCGTTGCTCCTTCCAAT+TGG + chr8.1:49886841-49886860 MS.gene070610:CDS 50.0%
GATGCCCATGCAACCTTCTA+CGG + chr8.1:49885316-49885335 MS.gene070610:CDS 50.0%
GTCACCGTAGAAGGTTGCAT+GGG - chr8.1:49885323-49885342 None:intergenic 50.0%
TACAGCGCTCTTCTTGCATG+AGG + chr8.1:49885258-49885277 MS.gene070610:CDS 50.0%
TGGGGACAAGTTTGGCATAC+GGG + chr8.1:49886750-49886769 MS.gene070610:CDS 50.0%
TGTCACCGTAGAAGGTTGCA+TGG - chr8.1:49885324-49885343 None:intergenic 50.0%
!!! ACACCGCCACTTTTGATGCA+TGG - chr8.1:49886603-49886622 None:intergenic 50.0%
ACCGGACATGTCACCGTAGA+AGG - chr8.1:49885332-49885351 None:intergenic 55.0%
ACGCAGAATGTCACCAGCGT+TGG - chr8.1:49886682-49886701 None:intergenic 55.0%
ATTGATGCAGAGGGGGCTTG+CGG + chr8.1:49886273-49886292 MS.gene070610:intron 55.0%
GCTCTTCTTGCATGAGGCCA+TGG + chr8.1:49885264-49885283 MS.gene070610:CDS 55.0%
GTCAATGGGATTGCGAGCCA+TGG - chr8.1:49885284-49885303 None:intergenic 55.0%
TTCTACGGTGACATGTCCGG+TGG + chr8.1:49885331-49885350 MS.gene070610:CDS 55.0%
GCAGAGGGGGCTTGCGGCTA+TGG + chr8.1:49886279-49886298 MS.gene070610:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 49885220 49886902 49885220 ID=MS.gene070610
chr8.1 mRNA 49885220 49886902 49885220 ID=MS.gene070610.t1;Parent=MS.gene070610
chr8.1 exon 49885220 49885364 49885220 ID=MS.gene070610.t1.exon1;Parent=MS.gene070610.t1
chr8.1 CDS 49885220 49885364 49885220 ID=cds.MS.gene070610.t1;Parent=MS.gene070610.t1
chr8.1 exon 49886283 49886902 49886283 ID=MS.gene070610.t1.exon2;Parent=MS.gene070610.t1
chr8.1 CDS 49886283 49886902 49886283 ID=cds.MS.gene070610.t1;Parent=MS.gene070610.t1
Gene Sequence

>MS.gene070610

ATGCCTAAGTCTTACTGTTTGCTTCCTTTGGCCTTTTTTACAGCGCTCTTCTTGCATGAGGCCATGGCTCGCAATCCCATTGACTCAAAATGGCACGATGCCCATGCAACCTTCTACGGTGACATGTCCGGTGGTGAAACAATGCGTAAGTATCAAATTAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATAGTCGTTCTCACCATGGTCTAATTTTTCTTTTTAATAGCACTTTTAGTTTTTATCTATTATAATACATAGATCAAATTGGATTCACAGCATTAACGTAGTTTTGAGTATTAGAAGCAGATTTTGAGGTATTCTTTTCGGTGGATTTGGTGAAATTTGGTTTGTGAGTGTCAATATGGCTTGACTATATTTATGAAAATACTACCAATTTTCATGAGAATACCAGATCTCTCAAACACACGTTAAATGTTGATTCCTTAGAAATACTAGTATATAATAACTATTATTTAATTTTGGGTTAATAGGGCTTTACCTCCTGTAATTTTAGTCATTTCCGGGTTTCCCCTGTAATTTTTTTATTTATTTATCCCCTTAATTTTTTTTAGAATACCCCTTAATAGTTCATTCAAAAAACAGGGAGTAAATGACCTATATTACAGAGGGTAAAACACTATTAACCCTTTAATTTAATAATACGTTGTATAATTATTCTTTTTATGATATATTAGTCATACATACATAAAGATACTCATTAGTAGTGTATCAAAGATACTCAGTAGTAGTGTATCAATATGAATCGACTATGTTTATTAGACCGCTTTTCATGAGATATATCCGGGTTAAGATCTCCATTTATAACTTTTTCCATTTGTTGCAACAAATGGAAAAAGTTTTAAATGGAGAGGATCTTTACCAGATATATCCAGATCTCAAAAACACACGTTAAATTTGTTTGATGTGAAACCCATATTAAATGTTGATTCCTAAAAAACATTTATTTGTTATTTTGTAATTTATTTATGCCATTATTAGTTTTTTGTATATAATATATTGTATTGATGCAGAGGGGGCTTGCGGCTATGGCAATCTATTCCAACAAGGATATGGGCTAGAAACCACAGCATTAAGCACGGCATTATTCAACCATGGCTACAGATGTGGTGCATGCTTTGAGATTAAGTGTGTCAATGACCCACAATGGTGCATCAAAGATGTTAACTCAATCACTGTGACAGCGACAAATTTTTGTCCACCAAATTACGACAAACCTGATGGAAATTGGTGTAACCCACCTCAAAAACATTTCGATTTGAGCATGAAGATGTTTACAACAATTGCCGTTTACAAAGCAGGGATCGTCCCAGTTCAATATCGACGTGTTCCATGCATCAAAAGTGGCGGTGTTAGATTTGAACTAAGAGGAAACCCTTATTTTTTGATGGTTTTGGTGTATAATGTTGCCAACGCTGGTGACATTCTGCGTGTGTCAATCAAAGGGTCTAATACTGGTTGGACTCCACTGCTACATAATTGGGGACAAGTTTGGCATACGGGAGTTAATTTGGTAGGACAAGATTTGTCATTTTGGGTTACGACAAGTGATCGAAAAGCTTTACTGTTCACTTCCGTTGCTCCTTCCAATTGGCAATTTGGACAAACCTACGAAAGCTCCGCCAATTTTTAG
Protein sequence

>MS.gene070610.t1

MPKSYCLLPLAFFTALFLHEAMARNPIDSKWHDAHATFYGDMSGGETMQGACGYGNLFQQGYGLETTALSTALFNHGYRCGACFEIKCVNDPQWCIKDVNSITVTATNFCPPNYDKPDGNWCNPPQKHFDLSMKMFTTIAVYKAGIVPVQYRRVPCIKSGGVRFELRGNPYFLMVLVYNVANAGDILRVSIKGSNTGWTPLLHNWGQVWHTGVNLVGQDLSFWVTTSDRKALLFTSVAPSNWQFGQTYESSANF